BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13014
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 12/137 (8%)
Query: 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKL 120
S++ A LK EGN ++ + ++ Y +A+ P + AV++ NR+AA KL
Sbjct: 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-----ANAVYFCNRAAAYSKL 59
Query: 121 ASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
+Y ++ C +AI ++P+Y K Y R +K EA+A Y+K LELDP+N
Sbjct: 60 GNYAG------AVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN 113
Query: 181 RDAYVATKVSPDLKLKE 197
+ Y + +LKL+E
Sbjct: 114 -ETYKSNLKIAELKLRE 129
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 62/113 (54%), Gaps = 12/113 (10%)
Query: 71 LKDEGNALFRLNQWSESLAKYNEALR--SCPRSCSVSRAVFYANRSAALEKLASYLSLEK 128
L+ EGN LF+ + +LA Y +AL + P+ +AV + NR+A +L LE
Sbjct: 31 LRKEGNELFKCGDYGGALAAYTQALGLDATPQD----QAVLHRNRAAC------HLKLED 80
Query: 129 PDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181
D++ SKAI + +K RR++ ++ +LD+A+ D Q+ + L+P N+
Sbjct: 81 YDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
A LK + N F+ + ++ Y++A+ P S A++Y NRS A YL E
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNP-----SNAIYYGNRSLA------YLRTE 54
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
++ ++AI L+ Y+K Y RRA K AL DY+ ++++ P+++DA
Sbjct: 55 CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 110
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 13/117 (11%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASY-LSL 126
A+ +K++GN F+ + +++ Y EA++ P+ A Y+NR+A KL + L+L
Sbjct: 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-----AKLYSNRAACYTKLLEFQLAL 70
Query: 127 EKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
+ C + I L P+++K Y R+A + +A+ YQK L+LD + ++A
Sbjct: 71 KD-------CEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSL 126
+A + K+ GNA ++ + +++ Y +AL P + S + N A K Y
Sbjct: 8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASA-----WYNLGNAYYKQGDY--- 59
Query: 127 EKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
++I KA+ L+P+ K + RR Y + +A+ DYQK LELDPNN A
Sbjct: 60 ---QKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA 113
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 131 QSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
++I KA+ L+P+ + Y + +A+ YQK LELDPNN A+
Sbjct: 27 KAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAW 80
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 157 YQQSDKLDEALADYQKILELDPNNRDAY 184
Y+Q D +A+ YQK LELDPNN A+
Sbjct: 20 YKQGD-YQKAIEYYQKALELDPNNASAW 46
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANR-----SAALEKLASYL 124
LK+ GN F+ W ++ KY + LR S + + A S L A L
Sbjct: 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL 284
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181
+ ++ +C +A+ ++PS K RRA+ +Q + D+ALAD +K E+ P ++
Sbjct: 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 11/118 (9%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
+ A LK + N F+ + ++ Y++A+ P S A++Y NRS A YL
Sbjct: 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNP-----SNAIYYGNRSLA------YLR 59
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
E ++ ++AI L+ Y+K Y RRA K AL DY+ ++++ P+++DA
Sbjct: 60 TECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 117
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 11/118 (9%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
+ A LK + N F+ + ++ Y++A+ P S A++Y NRS A YL
Sbjct: 19 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNP-----SNAIYYGNRSLA------YLR 67
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
E ++ ++AI L+ Y+K Y RRA K AL DY+ ++++ P+++DA
Sbjct: 68 TECYGYALNDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 125
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 23/141 (16%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEA--LRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
A++LKD+GN FR ++ +++ YN A L+ P VFY+N SA Y+S
Sbjct: 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDP--------VFYSNLSAC------YVS 51
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
+ + + +KA+ L P Y KV RRA + K +A+ D +L L+ + DA +
Sbjct: 52 VGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLS-VLSLNGDFNDASI 110
Query: 186 ATKVSPDL------KLKEKNG 200
+ +L KLKEK G
Sbjct: 111 EPMLERNLNKQAMSKLKEKFG 131
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 11/112 (9%)
Query: 72 KDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQ 131
K++GN F+ + ++ YNEA++ P + A+ Y+NR+A L KL + +
Sbjct: 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPEN-----AILYSNRAACLTKLMEF------QR 65
Query: 132 SILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
++ C I L+ ++K Y R+A + +A Y+ L++DP+N +A
Sbjct: 66 ALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
GNA ++ + E++ Y +AL P + + N A K Y D++I
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEA-----WYNLGNAYYKQGDY------DEAIE 64
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
KA+ L+P+ + + Y + DEA+ YQK LELDPNN +A
Sbjct: 65 YYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 130 DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
D++I KA+ L+P+ + + Y + DEA+ YQK LELDPNN +A+
Sbjct: 26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW 80
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 157 YQQSDKLDEALADYQKILELDPNNRDAY 184
Y+Q D DEA+ YQK LELDPNN +A+
Sbjct: 20 YKQGD-YDEAIEYYQKALELDPNNAEAW 46
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 70/131 (53%), Gaps = 11/131 (8%)
Query: 60 CSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEK 119
+KLEQ+ I +K+ G F+ ++ ++L +Y + + S S A ++ AL +
Sbjct: 140 SEEKLEQSTI-VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE--EAQKAQAL-R 195
Query: 120 LASYLSL-------EKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQK 172
LAS+L+L + +I +C+KA+ L+ + K RR + + + A AD+QK
Sbjct: 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQK 255
Query: 173 ILELDPNNRDA 183
+L+L PNN+ A
Sbjct: 256 VLQLYPNNKAA 266
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 5/126 (3%)
Query: 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRS---AALE 118
+KLEQ AI +K++G F+ ++ +++ +Y + + +S A+ S AA
Sbjct: 263 EKLEQAAI-VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 321
Query: 119 KLA-SYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177
LA YL L + +++ C KA+ L+ + K RR ++ + A D++K+LE++
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381
Query: 178 PNNRDA 183
P N+ A
Sbjct: 382 PQNKAA 387
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 5/126 (3%)
Query: 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRS---AALE 118
+KLEQ AI +K++G F+ ++ +++ +Y + + +S A+ S AA
Sbjct: 263 EKLEQAAI-VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 321
Query: 119 KLA-SYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177
LA YL L + +++ C KA+ L+ + K RR ++ + A D++K+LE++
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381
Query: 178 PNNRDA 183
P N+ A
Sbjct: 382 PQNKAA 387
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
Query: 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSL 126
+A LK++GN LF ++ E+ A Y A+ P AV+Y NR+ YL +
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-----AVYYTNRALC------YLKM 51
Query: 127 EKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181
++P+Q++ C +A+ L+ +K + + + + DEA+A+ Q+ L R
Sbjct: 52 QQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 135 AC-SKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
AC +AIT NP Y RA Y + + ++ALAD ++ LELD + A+
Sbjct: 25 ACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 75
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 11/135 (8%)
Query: 56 FYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSA 115
+ + +KLEQ+ I +K+ G F+ ++ ++L +Y + + S S A ++
Sbjct: 136 WEMNSEEKLEQSTI-VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE--EAQKAQ 192
Query: 116 ALEKLASYLSL-------EKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALA 168
AL +LAS+L+L + +I +C+KA+ L+ + K RR + + + A A
Sbjct: 193 AL-RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARA 251
Query: 169 DYQKILELDPNNRDA 183
D+QK+L+L PNN+ A
Sbjct: 252 DFQKVLQLYPNNKAA 266
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
GNA ++ + E++ Y +AL PRS + N A K Y D++I
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEA-----WYNLGNAYYKQGDY------DEAIE 56
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
KA+ L+P + + Y + DEA+ YQK LELDP + +A+
Sbjct: 57 YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW 106
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 11/104 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
GNA ++ + E++ Y +AL PRS + N A K Y D++I
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALELDPRSAEA-----WYNLGNAYYKQGDY------DEAIE 90
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDP 178
KA+ L+P + + Y + DEA+ YQK LELDP
Sbjct: 91 YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
Query: 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSL 126
+A LK++GN LF ++ E+ A Y A+ P AV+Y NR+ YL +
Sbjct: 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-----AVYYTNRALC------YLKM 56
Query: 127 EKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181
++P+Q++ C +A+ L+ +K + + + + DEA+A+ Q+ L R
Sbjct: 57 QQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 135 AC-SKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
AC +AIT NP Y RA Y + + ++ALAD ++ LELD + A+
Sbjct: 30 ACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 80
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 46.6 bits (109), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 13/100 (13%)
Query: 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILAC-SKAITLNP 144
E+L Y EA+R P + A Y+N L+++ Q L C ++AI +NP
Sbjct: 61 EALMHYKEAIRISP-----TFADAYSNMGNTLKEMQDV-------QGALQCYTRAIQINP 108
Query: 145 SYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
++ + A +++ S + EA+A Y+ L+L P+ DAY
Sbjct: 109 AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAY 148
Score = 35.0 bits (79), Expect = 0.038, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 130 DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
++++ KA+ + P + + A + QQ KL EAL Y++ + + P DAY
Sbjct: 26 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 80
Score = 29.6 bits (65), Expect = 1.3, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 114 SAALEKLASYLSLE-KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQK 172
+AA LAS L + K ++++ +AI ++P++ Y ++ + AL Y +
Sbjct: 43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR 102
Query: 173 ILELDPNNRDAY 184
++++P DA+
Sbjct: 103 AIQINPAFADAH 114
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 11/81 (13%)
Query: 74 EGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSI 133
EG F + W ++ Y E ++ P A Y+NR+AAL KL S+ P ++I
Sbjct: 145 EGKEYFTKSDWPNAVKAYTEMIKRAPED-----ARGYSNRAAALAKLMSF-----P-EAI 193
Query: 134 LACSKAITLNPSYLKVYQRRA 154
C+KAI +P++++ Y R+A
Sbjct: 194 ADCNKAIEKDPNFVRAYIRKA 214
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 11/81 (13%)
Query: 74 EGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSI 133
EG F + W ++ Y E ++ P A Y+NR+AAL KL S+ ++I
Sbjct: 10 EGKEYFTKSDWPNAVKAYTEMIKRAPED-----ARGYSNRAAALAKLMSF------PEAI 58
Query: 134 LACSKAITLNPSYLKVYQRRA 154
C+KAI +P++++ Y R+A
Sbjct: 59 ADCNKAIEKDPNFVRAYIRKA 79
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
GNA ++ + E++ Y +AL P + + N A K Y D++I
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNNAEA-----WYNLGNAYYKQGDY------DEAIE 64
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
KA+ L P+ + + Y + DEA+ YQK LEL PNN +A
Sbjct: 65 YYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA 113
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 130 DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
D++I KA+ L P+ + + Y + DEA+ YQK LEL PNN +A+
Sbjct: 26 DEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAW 80
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 157 YQQSDKLDEALADYQKILELDPNNRDAY 184
Y+Q D DEA+ YQK LEL PNN +A+
Sbjct: 20 YKQGD-YDEAIEYYQKALELYPNNAEAW 46
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPD 130
LK++GN + ++L Y+EA++ P + V Y+NRSAA K Y
Sbjct: 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHN-----HVLYSNRSAAYAKKGDY------Q 55
Query: 131 QSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
++ K + L P + K Y R+A + ++ +EA Y++ L+ + NN
Sbjct: 56 KAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 130 DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
D++I KA+ L+P+ + + Y + DEA+ YQK LELDPNN +A
Sbjct: 26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 157 YQQSDKLDEALADYQKILELDPNNRDAY 184
Y+Q D DEA+ YQK LELDPNN +A+
Sbjct: 20 YKQGD-YDEAIEYYQKALELDPNNAEAW 46
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 9/105 (8%)
Query: 78 LFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSL-EKPDQSILAC 136
L R +++++ +KY +++ P S++ Y RS E++ S EKP ++I C
Sbjct: 267 LIRDGRYTDATSKYESVMKTEP---SIAE---YTVRSK--ERICHCFSKDEKPVEAIRVC 318
Query: 137 SKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181
S+ + + P + + RA Y + DEA+ DY+ E + N++
Sbjct: 319 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ 363
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G L Q +++L++++ A+ P + + Y R+ +L++ K ++
Sbjct: 33 GKKLLAAGQLADALSQFHAAVDGDPDNY-----IAYYRRATV------FLAMGKSKAALP 81
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179
+K I L + +R L + KLDEA D++K+L+ +P+
Sbjct: 82 DLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
A+ LK+ GN F ++E++ Y A+ P + VFY+N SA Y+S
Sbjct: 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-----NEPVFYSNISAC------YISTG 73
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALAD 169
++ I +KA+ + P + K RRA + +A+ D
Sbjct: 74 DLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD 115
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 138 KAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
KA+ LNP Y Y R ++Y A D+QK L+P N Y+
Sbjct: 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYI 348
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
A+ LK+ GN F ++E++ Y A+ P + VFY+N SA Y+S
Sbjct: 21 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-----NEPVFYSNISAC------YISTG 69
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALAD 169
++ I +KA+ + P + K RRA + +A+ D
Sbjct: 70 DLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD 111
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 138 KAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
KA+ LNP Y Y R ++Y A D+QK L+P N Y+
Sbjct: 297 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYI 344
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKP--DQS 132
NAL +E+ YN ALR CP + +L LA+ + E+ +++
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCP------------THADSLNNLAN-IKREQGNIEEA 324
Query: 133 ILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ KA+ + P + + A + QQ KL EAL Y++ + + P DAY
Sbjct: 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 35/55 (63%)
Query: 130 DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
D+++ A +A++L+P++ V+ A +Y + +D A+ Y++ +EL P+ DAY
Sbjct: 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 130 DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
D+S + AI NP + Y +Y++ +L EA+ Y+ L L P+ D Y+
Sbjct: 50 DRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYI 105
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 26/156 (16%)
Query: 27 LFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQT---AISLKDEGNALFRLNQ 83
+ +L S I C + +R F + ++Q A + + GN Q
Sbjct: 35 VLLLLSSIHFQCRRLDRSAH------------FSTLAIKQNPLLAEAYSNLGNVYKERGQ 82
Query: 84 WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143
E++ Y ALR P Y N +AAL ++ + ++ A A+ N
Sbjct: 83 LQEAIEHYRHALRLKPDFID-----GYINLAAAL------VAAGDMEGAVQAYVSALQYN 131
Query: 144 PSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179
P V L + +L+EA A Y K +E PN
Sbjct: 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 138 KAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
KAI P++ + ++ ++ A+ ++K + LDPN DAY+
Sbjct: 160 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYI 207
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 57 YLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEAL 95
Y + ++ Q+A +K+EGN F+ N+ +E++ KY EAL
Sbjct: 27 YDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEAL 65
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 78 LFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSL-EKPDQSILAC 136
L R +++++ +KY ++ P S++ Y RS E++ S EKP ++I C
Sbjct: 267 LIRDGRYTDATSKYESVXKTEP---SIAE---YTVRSK--ERICHCFSKDEKPVEAIRVC 318
Query: 137 SKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181
S+ + P + + RA Y + DEA+ DY+ E + N++
Sbjct: 319 SEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQEHNENDQ 363
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G L Q +++L++++ A+ P + + Y R+ +L+ K ++
Sbjct: 33 GKKLLAAGQLADALSQFHAAVDGDPDNY-----IAYYRRATV------FLAXGKSKAALP 81
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179
+K I L + +R L + KLDEA D++K+L+ +P+
Sbjct: 82 DLTKVIQLKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 78 LFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSL-EKPDQSILAC 136
L R +++++ +KY ++ P SV+ Y RS E++ S EKP ++I C
Sbjct: 244 LIRDGRYTDATSKYESVXKTEP---SVAE---YTVRSK--ERICHCFSKDEKPVEAIRIC 295
Query: 137 SKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181
S+ + P + + RA Y + DEA+ DY+ E + N++
Sbjct: 296 SEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAAQEHNENDQ 340
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G L Q +++L++++ A+ P + Y R+ +L+ K ++
Sbjct: 10 GKKLLAAGQLADALSQFHAAVDGDP-----DNYIAYYRRATV------FLAXGKSKAALP 58
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182
+K I L + +R L + KLDEA D++K+L+ +P+ ++
Sbjct: 59 DLTKVIALKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE 106
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 130 DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDP 178
D++I KA+ L+P + + Y + DEA+ YQK LELDP
Sbjct: 20 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 157 YQQSDKLDEALADYQKILELDPNNRDAY 184
Y+Q D DEA+ YQK LELDP + +A+
Sbjct: 14 YKQGD-YDEAIEYYQKALELDPRSAEAW 40
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
GNA ++ + E++ Y +AL PRS + N A K Y D++I
Sbjct: 10 GNAYYKQGDYDEAIEYYQKALELDPRSAEA-----WYNLGNAYYKQGDY------DEAIE 58
Query: 135 ACSKAITLNP 144
KA+ L+P
Sbjct: 59 YYQKALELDP 68
>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|B Chain B, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|C Chain C, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|D Chain D, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 554
Score = 33.9 bits (76), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE- 127
IS+ D G+ ++ W E+ K + R + Y + KL Y +
Sbjct: 116 ISISDRGHVRSIVDNWPENHVK-AVVVTDGERILGLGDLGVYG-MGIPVGKLCLYTACAG 173
Query: 128 -KPDQSILACSKAITLN------PSYLKVYQRRARLYQQSDKLDE 165
+PDQ + C T N P Y+ +YQ+R R Q D +DE
Sbjct: 174 IRPDQCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDE 218
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 11/69 (15%)
Query: 72 KDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQ 131
K++GN+LF+ + E++ Y++ + + P++ V Y+N++ AL KL Y Q
Sbjct: 8 KEQGNSLFKQGLYREAVHCYDQLITAQPQN-----PVGYSNKAMALIKLGEY------TQ 56
Query: 132 SILACSKAI 140
+I C + +
Sbjct: 57 AIQMCQQGL 65
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 74 EGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL--------S 125
EGN L+R E+ AKY +A+ +C ++ + +++ L
Sbjct: 20 EGNRLYREGHVKEAAAKYYDAI-ACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCKLV 78
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDP 178
+E+ + + CS + +K Y +R + + EA AD+ K+LELDP
Sbjct: 79 VEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDP 131
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEAL 167
Y S+ + D++I A K I++ P +++ YQ Y+ DEA+
Sbjct: 117 YDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+++ +I A +AI LN Y Y + +Y + D+A+ Y+K + + P AY
Sbjct: 86 IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAY 144
>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|B Chain B, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|C Chain C, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|D Chain D, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 551
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Query: 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE- 127
IS+ D G+ ++ W E+ K + R + Y + KL Y +
Sbjct: 113 ISISDRGHVRSIVDNWPENHVK-AVVVTDGERILGLGDLGVYGX-GIPVGKLCLYTACAG 170
Query: 128 -KPDQSILACSKAITLN------PSYLKVYQRRARLYQQSDKLDE 165
+PD+ + C T N P Y +YQ+R R Q D +DE
Sbjct: 171 IRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDE 215
>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
pdb|1QR6|B Chain B, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
Length = 584
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Query: 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE- 127
IS+ D G+ ++ W E+ K + R + Y + KL Y +
Sbjct: 135 ISISDRGHVRSIVDNWPENHVK-AVVVTDGERILGLGDLGVYGX-GIPVGKLCLYTACAG 192
Query: 128 -KPDQSILACSKAITLN------PSYLKVYQRRARLYQQSDKLDE 165
+PD+ + C T N P Y +YQ+R R Q D +DE
Sbjct: 193 IRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDE 237
>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|B Chain B, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|C Chain C, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|D Chain D, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1PJ4|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ2|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ3|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate
Length = 564
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Query: 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE- 127
IS+ D G+ ++ W E+ K + R + Y + KL Y +
Sbjct: 115 ISISDRGHVRSIVDNWPENHVK-AVVVTDGERILGLGDLGVYGX-GIPVGKLCLYTACAG 172
Query: 128 -KPDQSILACSKAITLN------PSYLKVYQRRARLYQQSDKLDE 165
+PD+ + C T N P Y +YQ+R R Q D +DE
Sbjct: 173 IRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDE 217
>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|B Chain B, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|C Chain C, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|D Chain D, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFL|A Chain A, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|B Chain B, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|C Chain C, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|D Chain D, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1PJL|A Chain A, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|B Chain B, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|C Chain C, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|D Chain D, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|E Chain E, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|F Chain F, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|G Chain G, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|H Chain H, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
Length = 584
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Query: 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE- 127
IS+ D G+ ++ W E+ K + R + Y + KL Y +
Sbjct: 135 ISISDRGHVRSIVDNWPENHVK-AVVVTDGERILGLGDLGVYGX-GIPVGKLCLYTACAG 192
Query: 128 -KPDQSILACSKAITLN------PSYLKVYQRRARLYQQSDKLDE 165
+PD+ + C T N P Y +YQ+R R Q D +DE
Sbjct: 193 IRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDE 237
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Query: 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL------ 124
+ EGN L+R E+ AKY +A+ +C ++ + +++ L
Sbjct: 11 IHQEGNRLYREGHVKEAAAKYYDAI-ACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQC 69
Query: 125 --SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDP 178
+E+ + + CS + +K Y +R + + EA AD+ K+LELDP
Sbjct: 70 KLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDP 125
>pdb|3OAJ|A Chain A, Crystal Structure Of Putative Dioxygenase From Bacillus
Subtilis Subsp. Subtilis Str. 168
pdb|3OAJ|B Chain B, Crystal Structure Of Putative Dioxygenase From Bacillus
Subtilis Subsp. Subtilis Str. 168
Length = 335
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 150 YQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLS--PD 207
Y + R +Q + D+ + +I+E + + + +V+PD+ +K GAT LS PD
Sbjct: 106 YTKIERFGEQYVEFDDPHGLHLEIVEREEGEANTWTFGEVTPDVAIKGFGGATLLSEQPD 165
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%)
Query: 124 LSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
+ LE+P ++ +A+ LN + + + LDEAL+ + + E DP + DA
Sbjct: 136 VKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195
Query: 184 YVATKVS 190
+ V+
Sbjct: 196 FYNAGVT 202
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%)
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
A +KAI N Y A L ++L+ ALA Y K LELD + AY
Sbjct: 45 AFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAY 94
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177
+L + D++I + A+ L P+ KV++ A Y+Q + +EAL ++K ELD
Sbjct: 122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177
+L + D++I + A+ L P+ KV++ A Y+Q + +EAL ++K ELD
Sbjct: 122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 130 DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179
+++I A + A+T+ P ++ R D+ +EA+ Y + LE+ P
Sbjct: 230 NRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 132 SILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190
+IL AI +P + +Q +++ A+ Q+ LEL PNN A +A VS
Sbjct: 84 TILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177
+L + D++I + A+ L P+ KV++ A Y+Q + +EAL ++K ELD
Sbjct: 122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 154 ARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
A LY +LDEALA Y K LE P + D V
Sbjct: 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRV 189
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 72 KDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEK------LASYLS 125
K +GN+LF+ + E++ +Y A+ Y + + A++ A +
Sbjct: 183 KMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK 242
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181
L++ D++I C+ +T K RR + + ++D A D++K + P+++
Sbjct: 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK 298
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 139 AITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDP------NNRDAYVATKVSPD 192
A+ +NP+ +++ LY S+ D A A+ ++ +EL P N A +A P
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 193 LKLKEKNGATKLSP 206
L N A ++P
Sbjct: 224 EALDAYNRALDINP 237
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 139 AITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDP------NNRDAYVATKVSPD 192
A+ +NP+ +++ LY S+ D A A+ ++ +EL P N A +A P
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 193 LKLKEKNGATKLSP 206
L N A ++P
Sbjct: 224 EALDAYNRALDINP 237
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177
+L + D++I + A+ L P+ KV++ A Y+Q +EAL ++K ELD
Sbjct: 122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGSHEEALPHFKKANELD 174
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 33/59 (55%)
Query: 132 SILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190
++L A+ +P +++ +Q ++++ A++ ++ LEL P+N+ A +A VS
Sbjct: 20 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 78
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 33/59 (55%)
Query: 132 SILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190
++L A+ +P +++ +Q ++++ A++ ++ LEL P+N+ A +A VS
Sbjct: 43 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 101
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 33/59 (55%)
Query: 132 SILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190
++L A+ +P +++ +Q ++++ A++ ++ LEL P+N+ A +A VS
Sbjct: 34 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 92
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 33/59 (55%)
Query: 132 SILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190
++L A+ +P +++ +Q ++++ A++ ++ LEL P+N+ A +A VS
Sbjct: 43 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 101
>pdb|2KCL|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
pdb|2KCV|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
Length = 99
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 140 ITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
+ +P Y+ Y +LY++ D+ D+A+ Y + +E+
Sbjct: 33 VETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 69
>pdb|3MA5|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|B Chain B, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|C Chain C, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|D Chain D, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c
Length = 100
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 140 ITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
+ +P Y+ Y +LY++ D+ D+A+ Y + +E+
Sbjct: 34 VETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70
>pdb|4G1T|A Chain A, Crystal Structure Of Interferon-Stimulated Gene 54
pdb|4G1T|B Chain B, Crystal Structure Of Interferon-Stimulated Gene 54
Length = 472
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 138 KAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190
+A+ P V + A+ Y++ D+ D+A+ +K LE PNN AY+ ++
Sbjct: 238 EALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN--AYLHCQIG 288
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 33/59 (55%)
Query: 132 SILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190
++L A+ +P +++ +Q ++++ A++ ++ LEL P+N+ A +A VS
Sbjct: 83 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 141
>pdb|3ETZ|A Chain A, Crystal Structure Of Bacterial Adhesin Fada L76a Mutant
pdb|3ETZ|B Chain B, Crystal Structure Of Bacterial Adhesin Fada L76a Mutant
Length = 119
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVF 109
+L Q A L+ E N F +Q+ E+ +KY +AL+ +AV
Sbjct: 52 ELSQRAQRLQAEANTRFYKSQYQEAASKYEDALKKLEAEMEQQKAVI 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,556,028
Number of Sequences: 62578
Number of extensions: 238412
Number of successful extensions: 692
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 144
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)