Query psy13014
Match_columns 229
No_of_seqs 258 out of 2079
Neff 10.2
Searched_HMMs 46136
Date Fri Aug 16 17:09:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626|consensus 99.9 1.5E-25 3.3E-30 185.7 10.8 188 1-217 304-492 (966)
2 KOG4626|consensus 99.9 2.7E-24 5.8E-29 178.4 11.2 204 4-220 239-461 (966)
3 KOG1126|consensus 99.9 3.4E-22 7.3E-27 166.9 9.8 185 3-216 441-626 (638)
4 TIGR00990 3a0801s09 mitochondr 99.9 4.9E-21 1.1E-25 168.0 16.0 181 6-215 317-501 (615)
5 KOG1126|consensus 99.9 5.5E-22 1.2E-26 165.6 8.5 200 5-217 341-559 (638)
6 TIGR00990 3a0801s09 mitochondr 99.8 5.2E-20 1.1E-24 161.5 16.0 184 5-216 353-543 (615)
7 PRK12370 invasion protein regu 99.8 9.4E-20 2E-24 157.8 15.6 180 5-213 283-473 (553)
8 KOG1125|consensus 99.8 1.5E-19 3.2E-24 149.2 10.7 196 3-222 305-539 (579)
9 KOG1155|consensus 99.8 3.7E-18 8.1E-23 137.8 15.3 175 5-208 352-533 (559)
10 KOG0553|consensus 99.8 1.4E-18 3E-23 133.8 12.0 122 64-197 77-198 (304)
11 PRK09782 bacteriophage N4 rece 99.8 3.5E-18 7.5E-23 154.6 16.2 198 6-218 499-714 (987)
12 KOG4234|consensus 99.8 5.9E-18 1.3E-22 123.1 14.1 156 65-226 92-259 (271)
13 PRK15359 type III secretion sy 99.8 8.6E-18 1.9E-22 120.6 14.7 110 71-191 27-136 (144)
14 TIGR02521 type_IV_pilW type IV 99.8 8E-18 1.7E-22 129.2 15.3 167 17-212 31-200 (234)
15 PRK09782 bacteriophage N4 rece 99.8 8.3E-18 1.8E-22 152.2 16.6 195 6-215 532-745 (987)
16 PRK11447 cellulose synthase su 99.8 6.4E-18 1.4E-22 157.4 15.2 197 5-216 291-530 (1157)
17 KOG0547|consensus 99.8 5.4E-18 1.2E-22 137.7 12.6 175 6-209 383-564 (606)
18 PRK11189 lipoprotein NlpI; Pro 99.8 9.5E-18 2.1E-22 134.5 13.8 178 6-213 49-268 (296)
19 TIGR02521 type_IV_pilW type IV 99.8 3.1E-17 6.7E-22 125.9 15.5 166 13-207 61-228 (234)
20 PRK12370 invasion protein regu 99.8 1.6E-17 3.5E-22 143.9 15.0 159 5-191 326-485 (553)
21 PRK15174 Vi polysaccharide exp 99.8 1.4E-17 2.9E-22 146.7 14.7 197 5-214 98-317 (656)
22 KOG1155|consensus 99.8 7.3E-18 1.6E-22 136.1 11.8 164 17-209 330-493 (559)
23 PRK15174 Vi polysaccharide exp 99.8 2.3E-17 5E-22 145.3 14.8 196 6-215 167-386 (656)
24 PRK15359 type III secretion sy 99.8 2.3E-17 4.9E-22 118.4 12.1 126 5-161 15-140 (144)
25 KOG1125|consensus 99.7 1.1E-17 2.3E-22 138.3 10.2 165 3-179 339-530 (579)
26 PRK11788 tetratricopeptide rep 99.7 4.5E-17 9.9E-22 135.4 14.0 202 5-214 57-282 (389)
27 COG3063 PilF Tfp pilus assembl 99.7 2.7E-17 5.8E-22 122.2 11.1 155 19-202 37-193 (250)
28 PLN02789 farnesyltranstransfer 99.7 6.2E-17 1.3E-21 130.2 13.8 175 6-209 60-248 (320)
29 TIGR02917 PEP_TPR_lipo putativ 99.7 1.1E-16 2.4E-21 144.9 16.7 198 4-214 43-260 (899)
30 TIGR02917 PEP_TPR_lipo putativ 99.7 1.1E-16 2.4E-21 144.9 16.0 179 6-213 488-667 (899)
31 PRK11447 cellulose synthase su 99.7 1E-16 2.2E-21 149.4 15.6 199 5-216 373-672 (1157)
32 KOG0547|consensus 99.7 3.5E-17 7.6E-22 133.0 10.3 168 17-213 326-494 (606)
33 COG3063 PilF Tfp pilus assembl 99.7 1.7E-16 3.7E-21 118.0 13.1 139 65-215 32-173 (250)
34 PRK11788 tetratricopeptide rep 99.7 2.9E-16 6.2E-21 130.6 14.4 136 68-216 180-317 (389)
35 PRK11189 lipoprotein NlpI; Pro 99.7 5.6E-16 1.2E-20 124.3 14.2 134 63-209 59-192 (296)
36 PRK10370 formate-dependent nit 99.7 1E-15 2.3E-20 115.4 14.7 118 59-187 64-184 (198)
37 TIGR03302 OM_YfiO outer membra 99.7 9.6E-16 2.1E-20 119.1 14.0 176 11-209 27-230 (235)
38 PLN02789 farnesyltranstransfer 99.7 9.1E-16 2E-20 123.5 14.1 180 10-218 30-220 (320)
39 KOG1173|consensus 99.7 6.3E-16 1.4E-20 127.6 11.8 193 9-214 304-522 (611)
40 KOG0548|consensus 99.7 1.7E-15 3.8E-20 124.4 14.0 157 23-191 304-470 (539)
41 PF13429 TPR_15: Tetratricopep 99.7 7.9E-16 1.7E-20 122.6 11.2 191 5-209 66-275 (280)
42 TIGR02552 LcrH_SycD type III s 99.7 5E-15 1.1E-19 105.1 14.1 113 62-185 11-123 (135)
43 KOG1173|consensus 99.7 6.8E-16 1.5E-20 127.5 9.7 188 7-217 268-491 (611)
44 PLN03088 SGT1, suppressor of 99.6 6.4E-15 1.4E-19 120.9 14.2 115 71-197 5-119 (356)
45 PRK15363 pathogenicity island 99.6 1E-14 2.2E-19 103.7 12.9 107 63-180 29-136 (157)
46 PRK10370 formate-dependent nit 99.6 3.6E-15 7.7E-20 112.5 10.4 122 81-214 52-177 (198)
47 PF13429 TPR_15: Tetratricopep 99.6 6.1E-16 1.3E-20 123.3 6.3 193 13-218 40-251 (280)
48 KOG0550|consensus 99.6 6.5E-15 1.4E-19 117.8 11.7 159 9-179 195-353 (486)
49 KOG0543|consensus 99.6 8.7E-15 1.9E-19 117.3 12.5 139 64-209 204-353 (397)
50 COG5010 TadD Flp pilus assembl 99.6 2.2E-14 4.7E-19 108.8 13.7 170 8-207 58-227 (257)
51 KOG0548|consensus 99.6 2.6E-14 5.7E-19 117.6 15.0 195 4-216 245-461 (539)
52 PRK10049 pgaA outer membrane p 99.6 1.1E-14 2.5E-19 130.6 14.1 188 6-217 260-463 (765)
53 KOG1129|consensus 99.6 9.5E-16 2E-20 119.5 5.9 190 6-224 279-472 (478)
54 PRK15179 Vi polysaccharide bio 99.6 4.3E-14 9.2E-19 124.0 16.9 146 11-184 80-225 (694)
55 KOG0624|consensus 99.6 4.2E-14 9.1E-19 111.0 14.0 192 5-216 60-258 (504)
56 TIGR02552 LcrH_SycD type III s 99.6 4.6E-14 9.9E-19 100.2 12.4 118 5-150 5-122 (135)
57 TIGR03302 OM_YfiO outer membra 99.6 7.9E-14 1.7E-18 108.3 14.0 154 5-178 55-234 (235)
58 PRK15179 Vi polysaccharide bio 99.6 7.7E-14 1.7E-18 122.4 15.2 136 62-209 80-215 (694)
59 PRK10049 pgaA outer membrane p 99.6 1.3E-13 2.9E-18 123.8 16.1 171 12-212 10-180 (765)
60 PRK14574 hmsH outer membrane p 99.5 8.6E-14 1.9E-18 124.2 13.0 179 9-217 26-205 (822)
61 KOG3060|consensus 99.5 7.7E-13 1.7E-17 99.9 15.4 159 5-191 74-235 (289)
62 KOG2002|consensus 99.5 1.1E-13 2.3E-18 120.7 11.1 167 3-191 219-386 (1018)
63 KOG2002|consensus 99.5 5.3E-13 1.1E-17 116.5 13.9 163 6-192 259-425 (1018)
64 TIGR02795 tol_pal_ybgF tol-pal 99.5 1.5E-12 3.2E-17 90.0 13.6 112 68-187 2-116 (119)
65 KOG0550|consensus 99.5 1.2E-13 2.7E-18 110.5 8.7 172 14-209 166-348 (486)
66 KOG1129|consensus 99.5 8.3E-14 1.8E-18 108.8 6.9 161 6-191 313-473 (478)
67 KOG4162|consensus 99.5 1.2E-12 2.5E-17 112.0 13.3 189 5-216 466-789 (799)
68 PF13414 TPR_11: TPR repeat; P 99.5 4.5E-13 9.7E-18 83.8 8.0 66 107-178 3-69 (69)
69 PRK15363 pathogenicity island 99.5 3.4E-12 7.5E-17 90.8 12.9 108 10-145 27-135 (157)
70 TIGR00540 hemY_coli hemY prote 99.4 6.1E-12 1.3E-16 105.5 16.5 190 6-209 176-397 (409)
71 cd00189 TPR Tetratricopeptide 99.4 3E-12 6.5E-17 83.8 11.4 99 70-179 2-100 (100)
72 PRK02603 photosystem I assembl 99.4 7.7E-12 1.7E-16 92.5 14.7 112 62-181 29-154 (172)
73 cd05804 StaR_like StaR_like; a 99.4 3.3E-12 7.2E-17 105.0 13.8 180 12-212 1-217 (355)
74 KOG0553|consensus 99.4 1.7E-12 3.6E-17 100.5 10.7 125 24-176 88-215 (304)
75 PRK10747 putative protoheme IX 99.4 1.9E-11 4.1E-16 102.2 17.8 188 5-209 175-388 (398)
76 PRK14574 hmsH outer membrane p 99.4 3.5E-12 7.6E-17 114.0 14.2 163 5-197 56-218 (822)
77 KOG3060|consensus 99.4 6.5E-12 1.4E-16 95.0 13.4 144 62-216 80-226 (289)
78 KOG2003|consensus 99.4 1.9E-12 4.1E-17 105.3 11.0 192 6-209 513-726 (840)
79 KOG1174|consensus 99.4 4.7E-12 1E-16 101.8 12.8 154 7-189 324-513 (564)
80 COG5010 TadD Flp pilus assembl 99.4 2.7E-12 5.8E-17 97.5 10.3 148 60-220 59-207 (257)
81 KOG0624|consensus 99.4 1.5E-11 3.2E-16 96.9 14.7 196 5-213 94-301 (504)
82 COG2956 Predicted N-acetylgluc 99.4 5.6E-12 1.2E-16 98.4 12.2 196 6-209 58-276 (389)
83 KOG2076|consensus 99.4 3.9E-12 8.4E-17 110.4 12.3 136 65-212 136-272 (895)
84 PF13414 TPR_11: TPR repeat; P 99.4 9.1E-13 2E-17 82.3 6.3 67 67-144 2-69 (69)
85 COG4783 Putative Zn-dependent 99.4 2E-11 4.4E-16 100.0 15.0 150 13-190 302-451 (484)
86 cd05804 StaR_like StaR_like; a 99.4 5.9E-12 1.3E-16 103.5 12.0 154 14-179 40-218 (355)
87 KOG1840|consensus 99.4 1.2E-11 2.6E-16 104.4 13.3 183 11-209 193-394 (508)
88 PF12895 Apc3: Anaphase-promot 99.4 2.1E-12 4.5E-17 84.0 6.9 84 80-173 1-84 (84)
89 PLN03088 SGT1, suppressor of 99.4 1.3E-11 2.9E-16 101.4 13.1 115 20-162 5-119 (356)
90 KOG1128|consensus 99.4 1.9E-12 4E-17 110.2 7.9 169 13-216 453-621 (777)
91 KOG4162|consensus 99.4 3.3E-11 7.3E-16 103.2 14.9 135 20-182 653-789 (799)
92 KOG2076|consensus 99.3 4.7E-11 1E-15 103.8 15.8 134 17-178 139-272 (895)
93 CHL00033 ycf3 photosystem I as 99.3 5.8E-11 1.3E-15 87.5 14.2 111 63-181 30-154 (168)
94 COG2956 Predicted N-acetylgluc 99.3 4.9E-11 1.1E-15 93.2 14.2 181 18-212 108-313 (389)
95 PF13432 TPR_16: Tetratricopep 99.3 8.2E-12 1.8E-16 77.0 7.5 64 112-181 2-65 (65)
96 PRK15331 chaperone protein Sic 99.3 2.9E-11 6.3E-16 86.5 11.1 111 62-184 31-141 (165)
97 KOG1127|consensus 99.3 1.3E-11 2.9E-16 108.1 10.4 178 5-209 480-657 (1238)
98 KOG1156|consensus 99.3 1.2E-11 2.6E-16 104.1 9.8 143 7-177 31-173 (700)
99 KOG2003|consensus 99.3 1.2E-11 2.6E-16 100.7 9.5 140 63-214 485-625 (840)
100 PRK10747 putative protoheme IX 99.3 3.6E-11 7.9E-16 100.4 12.6 183 7-216 142-363 (398)
101 KOG4648|consensus 99.3 1.2E-11 2.6E-16 97.4 8.1 113 69-192 98-210 (536)
102 PRK14720 transcript cleavage f 99.3 4.6E-11 1E-15 106.4 12.8 197 8-219 56-315 (906)
103 COG4783 Putative Zn-dependent 99.3 1.5E-10 3.2E-15 95.0 14.3 133 65-209 303-435 (484)
104 KOG1840|consensus 99.3 2E-10 4.3E-15 97.1 15.1 182 12-209 278-477 (508)
105 KOG1128|consensus 99.3 7.5E-11 1.6E-15 100.6 12.6 179 14-224 395-596 (777)
106 PRK10803 tol-pal system protei 99.3 1.5E-10 3.2E-15 90.9 13.4 111 68-186 142-256 (263)
107 TIGR00540 hemY_coli hemY prote 99.3 7.4E-11 1.6E-15 99.0 12.5 201 7-215 108-371 (409)
108 COG4235 Cytochrome c biogenesi 99.3 1.6E-10 3.5E-15 89.9 13.3 115 61-186 149-266 (287)
109 PF12569 NARP1: NMDA receptor- 99.2 3.2E-10 7E-15 96.6 15.4 169 16-208 3-288 (517)
110 PF13432 TPR_16: Tetratricopep 99.2 3E-11 6.5E-16 74.5 6.8 65 72-147 1-65 (65)
111 KOG0495|consensus 99.2 1.2E-10 2.5E-15 98.6 12.1 197 6-216 539-754 (913)
112 PRK02603 photosystem I assembl 99.2 4.6E-10 9.9E-15 83.0 13.9 109 13-146 31-153 (172)
113 KOG1174|consensus 99.2 2.9E-10 6.2E-15 91.7 12.7 197 6-214 221-437 (564)
114 PRK10153 DNA-binding transcrip 99.2 8.3E-10 1.8E-14 94.6 16.1 148 10-185 330-491 (517)
115 PRK14720 transcript cleavage f 99.2 2.3E-10 4.9E-15 102.1 12.5 141 10-176 24-178 (906)
116 PF09976 TPR_21: Tetratricopep 99.2 1.1E-09 2.3E-14 78.7 13.9 102 64-174 44-145 (145)
117 PF13525 YfiO: Outer membrane 99.2 1.7E-09 3.7E-14 82.1 15.3 159 16-190 4-184 (203)
118 cd00189 TPR Tetratricopeptide 99.2 9E-11 2E-15 76.6 7.3 97 109-212 2-99 (100)
119 KOG0495|consensus 99.2 2.9E-10 6.3E-15 96.3 11.1 173 7-209 608-780 (913)
120 TIGR02795 tol_pal_ybgF tol-pal 99.2 8E-10 1.7E-14 76.2 11.4 112 17-150 2-113 (119)
121 KOG0543|consensus 99.2 1.5E-09 3.4E-14 87.5 14.1 144 22-178 213-357 (397)
122 PF13371 TPR_9: Tetratricopept 99.1 2.6E-10 5.6E-15 71.9 7.6 68 123-190 5-72 (73)
123 KOG1127|consensus 99.1 3.9E-10 8.4E-15 99.2 10.8 162 4-191 513-674 (1238)
124 PF13512 TPR_18: Tetratricopep 99.1 4.2E-09 9.1E-14 73.9 13.8 113 67-187 9-139 (142)
125 CHL00033 ycf3 photosystem I as 99.1 1.7E-10 3.8E-15 84.9 7.2 123 82-214 13-153 (168)
126 KOG1156|consensus 99.1 1.1E-09 2.3E-14 92.6 12.3 160 18-206 8-167 (700)
127 KOG0551|consensus 99.1 1E-09 2.2E-14 86.2 11.2 118 63-187 76-193 (390)
128 COG1729 Uncharacterized protei 99.1 2.1E-09 4.5E-14 82.9 12.8 112 70-189 143-257 (262)
129 PF14559 TPR_19: Tetratricopep 99.1 1.4E-10 3E-15 72.1 5.0 66 124-189 2-67 (68)
130 PRK10866 outer membrane biogen 99.1 1.1E-08 2.3E-13 79.7 16.6 164 15-201 30-231 (243)
131 PRK11906 transcriptional regul 99.1 4E-09 8.7E-14 87.0 14.3 140 6-172 281-432 (458)
132 PF12688 TPR_5: Tetratrico pep 99.1 4.3E-09 9.3E-14 72.5 12.3 99 69-175 2-103 (120)
133 COG4235 Cytochrome c biogenesi 99.1 1.3E-09 2.8E-14 85.0 9.7 117 84-212 138-258 (287)
134 KOG4642|consensus 99.1 5.4E-10 1.2E-14 84.0 7.1 101 66-177 8-108 (284)
135 PRK11906 transcriptional regul 99.1 7.8E-09 1.7E-13 85.3 14.2 141 20-184 258-409 (458)
136 PRK15331 chaperone protein Sic 99.0 4.1E-09 8.9E-14 75.6 10.9 117 3-148 23-139 (165)
137 PF14559 TPR_19: Tetratricopep 99.0 1.1E-09 2.4E-14 68.0 7.1 68 78-156 1-68 (68)
138 PF09295 ChAPs: ChAPs (Chs5p-A 99.0 7.1E-09 1.5E-13 85.5 13.6 126 32-187 183-308 (395)
139 PF12895 Apc3: Anaphase-promot 99.0 7.8E-10 1.7E-14 71.8 6.4 82 32-139 3-84 (84)
140 PRK10153 DNA-binding transcrip 99.0 3.2E-09 6.8E-14 91.0 11.7 136 67-215 338-487 (517)
141 PF09976 TPR_21: Tetratricopep 99.0 1.1E-08 2.3E-13 73.5 12.5 134 66-209 9-145 (145)
142 PF04733 Coatomer_E: Coatomer 99.0 1E-09 2.2E-14 87.5 7.7 168 15-216 100-271 (290)
143 PF13371 TPR_9: Tetratricopept 99.0 2.8E-09 6E-14 67.1 7.7 70 75-155 2-71 (73)
144 KOG0376|consensus 99.0 7.8E-10 1.7E-14 90.8 6.3 111 70-191 6-116 (476)
145 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 2.6E-09 5.6E-14 88.0 9.0 65 107-177 75-142 (453)
146 PRK10803 tol-pal system protei 99.0 1.2E-08 2.6E-13 80.2 12.5 108 17-149 142-253 (263)
147 COG4785 NlpI Lipoprotein NlpI, 99.0 2.6E-09 5.7E-14 79.4 7.9 109 63-182 60-168 (297)
148 PF13525 YfiO: Outer membrane 99.0 2.1E-08 4.5E-13 76.2 13.2 112 66-185 3-128 (203)
149 KOG0545|consensus 99.0 1.4E-08 3E-13 76.9 11.1 117 62-184 172-301 (329)
150 KOG4555|consensus 98.9 4.1E-08 8.8E-13 67.4 12.1 106 66-182 41-150 (175)
151 PRK10866 outer membrane biogen 98.9 3.9E-08 8.5E-13 76.6 13.4 111 66-184 30-161 (243)
152 PF04733 Coatomer_E: Coatomer 98.9 2.2E-08 4.8E-13 79.9 12.1 142 15-184 129-273 (290)
153 PF06552 TOM20_plant: Plant sp 98.9 2.7E-08 5.9E-13 72.1 10.9 103 84-191 7-124 (186)
154 PF14938 SNAP: Soluble NSF att 98.9 6.5E-08 1.4E-12 77.2 13.3 174 20-212 37-227 (282)
155 PF12688 TPR_5: Tetratrico pep 98.9 6.7E-08 1.4E-12 66.6 11.3 103 17-141 1-103 (120)
156 PF14938 SNAP: Soluble NSF att 98.9 2.8E-07 6.2E-12 73.6 16.5 146 61-212 107-268 (282)
157 PF13424 TPR_12: Tetratricopep 98.9 9.1E-09 2E-13 65.7 6.3 65 106-176 4-75 (78)
158 KOG2376|consensus 98.9 6.1E-08 1.3E-12 81.5 12.6 172 8-212 37-255 (652)
159 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 3.9E-08 8.5E-13 81.2 11.4 123 75-212 176-298 (395)
160 KOG4648|consensus 98.8 2.3E-09 4.9E-14 84.8 3.4 95 123-218 107-202 (536)
161 KOG4340|consensus 98.8 2.5E-08 5.4E-13 77.7 8.7 170 7-209 34-205 (459)
162 PF13424 TPR_12: Tetratricopep 98.8 2.2E-08 4.7E-13 63.9 7.1 72 65-142 2-75 (78)
163 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 3.8E-08 8.2E-13 81.2 9.1 72 61-143 68-142 (453)
164 PF12569 NARP1: NMDA receptor- 98.8 3.7E-07 8E-12 78.2 15.2 131 67-209 193-332 (517)
165 KOG1130|consensus 98.8 2.7E-08 5.8E-13 80.6 7.5 196 6-209 40-302 (639)
166 COG3071 HemY Uncharacterized e 98.8 5.2E-07 1.1E-11 72.7 14.5 186 7-209 177-388 (400)
167 KOG4234|consensus 98.7 1.8E-08 3.9E-13 74.1 5.4 101 108-215 96-202 (271)
168 PF13512 TPR_18: Tetratricopep 98.7 2.2E-07 4.7E-12 65.3 10.1 111 17-149 10-135 (142)
169 COG1729 Uncharacterized protei 98.7 2.5E-07 5.5E-12 71.5 11.2 111 20-152 144-254 (262)
170 KOG2796|consensus 98.7 7.6E-07 1.6E-11 68.4 12.4 124 63-192 207-334 (366)
171 COG4785 NlpI Lipoprotein NlpI, 98.6 6.7E-08 1.4E-12 72.1 5.8 106 103-215 61-167 (297)
172 COG0457 NrfG FOG: TPR repeat [ 98.6 2.4E-06 5.2E-11 64.3 13.7 123 77-209 139-263 (291)
173 COG0457 NrfG FOG: TPR repeat [ 98.6 5.8E-06 1.3E-10 62.1 14.8 170 17-213 59-234 (291)
174 PF13428 TPR_14: Tetratricopep 98.5 2.7E-07 5.9E-12 51.9 5.3 42 148-189 2-43 (44)
175 KOG3081|consensus 98.5 2E-06 4.2E-11 66.2 11.1 147 14-191 105-251 (299)
176 PLN03218 maturation of RBCL 1; 98.5 3.6E-06 7.8E-11 78.0 14.8 129 68-209 579-711 (1060)
177 KOG1308|consensus 98.5 1.6E-07 3.4E-12 74.5 5.0 101 68-179 114-214 (377)
178 PF13431 TPR_17: Tetratricopep 98.5 1.3E-07 2.7E-12 50.0 2.8 34 135-168 1-34 (34)
179 COG4105 ComL DNA uptake lipopr 98.5 1.7E-05 3.7E-10 61.0 15.3 154 16-191 33-211 (254)
180 COG4700 Uncharacterized protei 98.5 1.1E-05 2.4E-10 59.0 13.2 125 67-204 88-215 (251)
181 PLN03081 pentatricopeptide (PP 98.5 6.7E-07 1.5E-11 80.2 8.6 82 123-209 370-453 (697)
182 PLN03218 maturation of RBCL 1; 98.5 6.7E-06 1.5E-10 76.3 14.9 127 70-209 651-781 (1060)
183 KOG1915|consensus 98.4 9.1E-06 2E-10 67.4 13.8 192 4-209 309-534 (677)
184 PLN03081 pentatricopeptide (PP 98.4 1.7E-06 3.7E-11 77.6 10.5 130 68-209 426-555 (697)
185 KOG2796|consensus 98.4 1.2E-05 2.7E-10 61.9 13.4 179 23-214 128-319 (366)
186 PF13428 TPR_14: Tetratricopep 98.4 5.4E-07 1.2E-11 50.7 4.3 42 108-155 2-43 (44)
187 PF00515 TPR_1: Tetratricopept 98.4 8.2E-07 1.8E-11 46.9 4.6 32 148-179 2-33 (34)
188 PF06552 TOM20_plant: Plant sp 98.4 4.9E-06 1.1E-10 60.6 9.8 66 84-154 51-121 (186)
189 PF04184 ST7: ST7 protein; In 98.4 2.4E-05 5.2E-10 65.3 15.0 173 7-191 192-390 (539)
190 KOG4642|consensus 98.3 3.6E-07 7.8E-12 69.0 3.3 92 111-209 14-105 (284)
191 COG4700 Uncharacterized protei 98.3 3E-05 6.4E-10 56.9 12.8 130 19-174 91-220 (251)
192 PLN03077 Protein ECB2; Provisi 98.3 9.1E-06 2E-10 74.7 12.4 167 14-208 551-717 (857)
193 PF07719 TPR_2: Tetratricopept 98.3 2.1E-06 4.5E-11 45.2 4.9 33 148-180 2-34 (34)
194 KOG4555|consensus 98.3 2.4E-05 5.3E-10 53.9 10.8 105 19-147 45-149 (175)
195 PF00515 TPR_1: Tetratricopept 98.3 1.5E-06 3.3E-11 45.8 3.7 34 107-146 1-34 (34)
196 KOG1070|consensus 98.3 2.3E-05 5.1E-10 72.2 13.3 191 6-209 1447-1661(1710)
197 KOG1130|consensus 98.3 4.4E-06 9.5E-11 68.1 7.8 137 24-177 202-345 (639)
198 KOG3785|consensus 98.3 2E-05 4.3E-10 63.2 11.2 154 18-189 58-227 (557)
199 PF07719 TPR_2: Tetratricopept 98.2 3.2E-06 7E-11 44.4 4.0 34 107-146 1-34 (34)
200 COG4105 ComL DNA uptake lipopr 98.2 7.6E-05 1.7E-09 57.5 12.7 111 67-185 33-154 (254)
201 KOG2376|consensus 98.2 3.9E-05 8.5E-10 65.1 11.8 120 26-177 21-140 (652)
202 COG3071 HemY Uncharacterized e 98.1 0.00011 2.3E-09 59.7 13.5 128 17-176 263-390 (400)
203 PF05843 Suf: Suppressor of fo 98.1 0.00022 4.8E-09 56.9 15.2 142 20-189 4-149 (280)
204 PF13431 TPR_17: Tetratricopep 98.1 2.2E-06 4.8E-11 45.2 2.6 34 90-134 1-34 (34)
205 KOG4340|consensus 98.1 4.8E-05 1E-09 59.8 10.5 143 4-176 65-207 (459)
206 PF03704 BTAD: Bacterial trans 98.1 0.0003 6.4E-09 50.4 14.2 99 71-175 9-124 (146)
207 PRK04841 transcriptional regul 98.1 0.00015 3.3E-09 67.1 15.0 173 18-209 453-639 (903)
208 KOG0376|consensus 98.1 1.5E-06 3.3E-11 71.9 1.7 94 123-217 14-108 (476)
209 KOG2471|consensus 98.1 2.5E-05 5.3E-10 65.1 8.6 124 63-192 235-380 (696)
210 PLN03077 Protein ECB2; Provisi 98.1 6E-05 1.3E-09 69.4 12.0 134 67-215 553-691 (857)
211 KOG2610|consensus 98.0 0.00018 3.9E-09 57.5 12.7 106 75-191 110-219 (491)
212 KOG0545|consensus 98.0 0.00047 1E-08 52.8 14.2 123 18-152 179-303 (329)
213 PRK04841 transcriptional regul 98.0 0.00022 4.8E-09 66.0 14.9 177 18-209 410-600 (903)
214 KOG1941|consensus 98.0 2E-05 4.2E-10 63.4 6.8 134 69-209 123-273 (518)
215 KOG1915|consensus 98.0 0.00016 3.5E-09 60.2 12.1 180 6-209 62-271 (677)
216 KOG3081|consensus 98.0 0.0011 2.4E-08 51.3 15.3 144 14-183 134-278 (299)
217 KOG3785|consensus 98.0 0.00046 1E-08 55.6 13.7 137 12-160 86-232 (557)
218 KOG1941|consensus 97.9 0.00015 3.2E-09 58.5 10.5 144 18-178 123-277 (518)
219 PF13181 TPR_8: Tetratricopept 97.9 2.4E-05 5.1E-10 41.1 4.0 32 148-179 2-33 (34)
220 KOG2047|consensus 97.9 0.0004 8.7E-09 59.9 13.1 180 9-209 341-538 (835)
221 KOG1586|consensus 97.9 0.0014 3E-08 50.0 14.5 112 66-183 71-190 (288)
222 KOG2053|consensus 97.9 9.2E-05 2E-09 65.6 9.3 101 79-191 20-120 (932)
223 COG2976 Uncharacterized protei 97.8 0.0059 1.3E-07 45.3 16.7 105 68-181 89-193 (207)
224 KOG1070|consensus 97.8 0.0011 2.4E-08 61.7 15.7 120 62-190 1558-1677(1710)
225 PF05843 Suf: Suppressor of fo 97.8 6.4E-05 1.4E-09 60.0 7.2 119 70-200 3-125 (280)
226 PF10300 DUF3808: Protein of u 97.8 0.00037 8.1E-09 59.6 11.6 109 62-177 261-377 (468)
227 PF13181 TPR_8: Tetratricopept 97.7 4.1E-05 9E-10 40.1 3.2 33 108-146 2-34 (34)
228 PF04910 Tcf25: Transcriptiona 97.7 0.0033 7.1E-08 52.0 15.5 171 4-184 27-230 (360)
229 KOG1310|consensus 97.7 0.00022 4.8E-09 60.1 8.5 111 63-184 369-482 (758)
230 KOG2610|consensus 97.7 0.00065 1.4E-08 54.4 10.4 107 59-173 128-235 (491)
231 PF10300 DUF3808: Protein of u 97.7 0.00069 1.5E-08 58.0 11.5 113 7-142 257-376 (468)
232 PF14853 Fis1_TPR_C: Fis1 C-te 97.7 0.00016 3.5E-09 42.0 5.2 43 149-191 3-45 (53)
233 KOG2471|consensus 97.6 0.00013 2.8E-09 60.9 6.1 132 12-159 235-381 (696)
234 KOG0551|consensus 97.6 0.00041 8.9E-09 55.3 8.2 97 106-209 80-180 (390)
235 KOG1586|consensus 97.6 0.0085 1.8E-07 45.8 14.8 137 67-209 112-263 (288)
236 KOG2053|consensus 97.6 0.0019 4E-08 57.7 12.7 110 62-183 37-146 (932)
237 PF13174 TPR_6: Tetratricopept 97.6 0.00024 5.1E-09 36.7 4.5 31 149-179 2-32 (33)
238 PF04781 DUF627: Protein of un 97.6 0.0015 3.2E-08 43.9 9.2 102 74-177 2-108 (111)
239 PRK10941 hypothetical protein; 97.5 0.001 2.3E-08 52.5 9.3 79 106-190 180-258 (269)
240 PF13176 TPR_7: Tetratricopept 97.5 0.00028 6E-09 37.6 4.0 26 149-174 1-26 (36)
241 PF12968 DUF3856: Domain of Un 97.5 0.015 3.3E-07 39.6 13.1 98 73-176 14-129 (144)
242 KOG2047|consensus 97.5 0.0029 6.3E-08 54.8 11.8 164 3-185 367-551 (835)
243 KOG3824|consensus 97.4 0.00061 1.3E-08 54.0 7.1 70 123-192 126-195 (472)
244 KOG4507|consensus 97.4 0.00036 7.9E-09 59.6 5.9 106 74-189 613-718 (886)
245 PF13174 TPR_6: Tetratricopept 97.4 0.00047 1E-08 35.6 4.3 33 69-101 1-33 (33)
246 KOG1308|consensus 97.4 1.2E-05 2.6E-10 64.0 -3.0 89 123-212 124-213 (377)
247 PF14853 Fis1_TPR_C: Fis1 C-te 97.3 0.0011 2.4E-08 38.5 5.6 44 108-157 2-45 (53)
248 KOG0530|consensus 97.3 0.0018 4E-08 50.1 8.2 157 8-191 68-231 (318)
249 smart00028 TPR Tetratricopepti 97.3 0.00057 1.2E-08 34.4 3.7 31 149-179 3-33 (34)
250 PF04184 ST7: ST7 protein; In 97.2 0.0022 4.7E-08 54.0 8.6 105 74-191 174-305 (539)
251 PRK10941 hypothetical protein; 97.2 0.0071 1.5E-07 47.8 10.8 78 68-156 181-258 (269)
252 KOG3824|consensus 97.2 0.0023 5.1E-08 50.7 7.6 82 64-156 112-193 (472)
253 PF03704 BTAD: Bacterial trans 97.2 0.0056 1.2E-07 43.7 9.2 66 65-141 59-124 (146)
254 COG3118 Thioredoxin domain-con 97.1 0.014 3E-07 46.2 11.7 101 68-179 134-268 (304)
255 KOG2396|consensus 97.1 0.0069 1.5E-07 51.1 10.3 96 85-191 88-184 (568)
256 PF13176 TPR_7: Tetratricopept 97.1 0.00072 1.6E-08 35.9 3.1 28 109-142 1-28 (36)
257 KOG1585|consensus 97.1 0.05 1.1E-06 42.0 13.9 122 64-191 106-238 (308)
258 PF02259 FAT: FAT domain; Int 97.1 0.015 3.2E-07 47.7 12.2 147 14-179 143-341 (352)
259 KOG1585|consensus 97.1 0.059 1.3E-06 41.7 13.9 172 20-209 33-217 (308)
260 COG4976 Predicted methyltransf 97.0 0.0014 3E-08 49.8 5.2 61 123-183 5-65 (287)
261 KOG4814|consensus 97.0 0.071 1.5E-06 46.5 15.6 102 69-176 355-457 (872)
262 smart00028 TPR Tetratricopepti 97.0 0.00088 1.9E-08 33.6 2.9 33 108-146 2-34 (34)
263 KOG3617|consensus 97.0 0.0069 1.5E-07 54.1 9.6 154 12-175 797-995 (1416)
264 PF09986 DUF2225: Uncharacteri 97.0 0.011 2.4E-07 45.2 9.7 99 77-181 86-199 (214)
265 PF09613 HrpB1_HrpK: Bacterial 96.9 0.031 6.7E-07 40.4 11.0 113 66-191 8-120 (160)
266 PF13281 DUF4071: Domain of un 96.9 0.02 4.3E-07 47.2 11.4 143 14-184 176-342 (374)
267 PF13281 DUF4071: Domain of un 96.9 0.19 4.1E-06 41.6 16.5 110 67-183 140-262 (374)
268 KOG3364|consensus 96.8 0.019 4.1E-07 40.1 8.7 73 70-152 34-110 (149)
269 KOG3364|consensus 96.8 0.04 8.6E-07 38.5 10.1 79 107-191 32-115 (149)
270 KOG0546|consensus 96.8 0.0027 5.8E-08 51.2 5.0 117 69-191 223-353 (372)
271 PF02259 FAT: FAT domain; Int 96.8 0.087 1.9E-06 43.2 14.3 122 64-192 142-303 (352)
272 KOG3617|consensus 96.7 0.042 9.1E-07 49.4 12.3 117 18-141 859-995 (1416)
273 PF09986 DUF2225: Uncharacteri 96.7 0.082 1.8E-06 40.4 12.5 86 63-154 113-207 (214)
274 PF14561 TPR_20: Tetratricopep 96.7 0.0079 1.7E-07 39.2 6.0 61 131-191 6-68 (90)
275 PF10602 RPN7: 26S proteasome 96.7 0.17 3.6E-06 37.5 14.3 107 63-177 31-143 (177)
276 PF14561 TPR_20: Tetratricopep 96.6 0.037 8E-07 36.1 8.7 74 87-171 7-82 (90)
277 COG2976 Uncharacterized protei 96.6 0.07 1.5E-06 39.8 10.9 101 21-147 93-193 (207)
278 KOG1550|consensus 96.4 0.14 3E-06 45.1 13.7 138 14-177 241-394 (552)
279 PF15015 NYD-SP12_N: Spermatog 96.4 0.1 2.2E-06 43.5 11.7 62 107-174 228-289 (569)
280 PF09613 HrpB1_HrpK: Bacterial 96.4 0.061 1.3E-06 38.9 9.3 84 107-197 10-93 (160)
281 COG3118 Thioredoxin domain-con 96.3 0.29 6.3E-06 38.9 13.4 128 6-161 157-286 (304)
282 PF08424 NRDE-2: NRDE-2, neces 96.2 0.39 8.4E-06 39.2 14.6 154 5-183 7-190 (321)
283 PF13374 TPR_10: Tetratricopep 96.2 0.015 3.3E-07 31.4 4.5 29 148-176 3-31 (42)
284 COG3898 Uncharacterized membra 96.2 0.51 1.1E-05 39.2 14.5 158 17-179 120-295 (531)
285 COG0790 FOG: TPR repeat, SEL1 96.2 0.51 1.1E-05 37.7 15.1 115 63-191 104-233 (292)
286 PF04781 DUF627: Protein of un 96.1 0.025 5.4E-07 38.1 5.9 86 123-209 6-105 (111)
287 COG4976 Predicted methyltransf 96.1 0.011 2.5E-07 45.0 4.7 60 77-147 4-63 (287)
288 PF08424 NRDE-2: NRDE-2, neces 96.1 0.12 2.5E-06 42.3 10.9 98 89-191 6-109 (321)
289 PRK15180 Vi polysaccharide bio 96.1 0.038 8.1E-07 46.8 8.0 123 78-212 299-422 (831)
290 KOG4507|consensus 96.1 0.0072 1.6E-07 52.0 3.8 98 123-221 617-716 (886)
291 KOG2581|consensus 96.0 0.74 1.6E-05 38.3 15.2 148 21-181 129-281 (493)
292 COG3914 Spy Predicted O-linked 95.9 0.29 6.2E-06 42.5 12.7 113 65-189 65-184 (620)
293 KOG0530|consensus 95.9 0.32 6.9E-06 38.1 11.6 118 62-190 71-190 (318)
294 PF07079 DUF1347: Protein of u 95.8 0.99 2.1E-05 38.2 16.1 105 64-173 375-521 (549)
295 COG1747 Uncharacterized N-term 95.8 0.38 8.2E-06 41.3 12.7 143 64-219 95-297 (711)
296 COG0790 FOG: TPR repeat, SEL1 95.8 0.75 1.6E-05 36.7 15.8 140 12-182 104-272 (292)
297 COG5191 Uncharacterized conser 95.8 0.014 3E-07 46.5 4.0 91 90-191 95-186 (435)
298 KOG0529|consensus 95.8 0.57 1.2E-05 39.0 13.3 171 8-191 54-239 (421)
299 KOG3807|consensus 95.7 0.87 1.9E-05 37.1 15.5 172 7-190 208-405 (556)
300 TIGR02561 HrpB1_HrpK type III 95.7 0.47 1E-05 33.9 12.5 86 69-165 11-96 (153)
301 PRK13184 pknD serine/threonine 95.7 0.11 2.3E-06 48.2 10.0 117 72-191 479-596 (932)
302 KOG2300|consensus 95.7 0.77 1.7E-05 39.1 14.0 144 16-182 366-523 (629)
303 PF13374 TPR_10: Tetratricopep 95.6 0.04 8.7E-07 29.7 4.6 31 68-98 2-32 (42)
304 PF08631 SPO22: Meiosis protei 95.5 0.96 2.1E-05 36.1 15.4 133 32-178 7-152 (278)
305 PF12862 Apc5: Anaphase-promot 95.4 0.11 2.4E-06 34.1 6.8 61 77-143 7-71 (94)
306 PF10602 RPN7: 26S proteasome 95.3 0.49 1.1E-05 35.1 10.8 106 18-143 37-143 (177)
307 COG2912 Uncharacterized conser 95.3 0.69 1.5E-05 36.4 11.8 75 70-155 183-257 (269)
308 KOG1258|consensus 95.3 1.3 2.9E-05 38.5 14.4 172 8-191 288-485 (577)
309 COG3898 Uncharacterized membra 95.2 1.5 3.2E-05 36.6 13.8 85 108-202 264-349 (531)
310 PF10516 SHNi-TPR: SHNi-TPR; 95.2 0.042 9.1E-07 29.5 3.4 29 148-176 2-30 (38)
311 PF07720 TPR_3: Tetratricopept 95.1 0.11 2.3E-06 27.5 4.9 32 148-179 2-35 (36)
312 KOG2300|consensus 95.1 1.9 4.2E-05 36.9 15.8 103 64-177 363-475 (629)
313 KOG1310|consensus 95.1 0.031 6.8E-07 47.7 4.1 96 123-219 384-483 (758)
314 COG2912 Uncharacterized conser 95.0 0.13 2.7E-06 40.5 7.1 68 123-190 191-258 (269)
315 KOG2396|consensus 95.0 0.28 6E-06 41.8 9.5 80 62-152 99-179 (568)
316 PF08631 SPO22: Meiosis protei 94.9 0.2 4.4E-06 39.9 8.4 125 78-209 3-148 (278)
317 PF07079 DUF1347: Protein of u 94.9 1.5 3.3E-05 37.1 13.4 136 16-176 5-157 (549)
318 PF10373 EST1_DNA_bind: Est1 D 94.9 0.062 1.3E-06 42.6 5.4 60 132-191 1-60 (278)
319 KOG1550|consensus 94.8 0.62 1.3E-05 41.1 11.8 130 63-209 239-391 (552)
320 PF12862 Apc5: Anaphase-promot 94.8 0.23 5E-06 32.5 7.0 56 123-178 8-72 (94)
321 KOG1914|consensus 94.7 1.6 3.5E-05 37.8 13.2 86 123-209 411-499 (656)
322 KOG4151|consensus 94.7 0.14 3.1E-06 45.6 7.4 115 66-185 51-165 (748)
323 KOG2422|consensus 94.5 3 6.5E-05 36.5 16.5 166 3-180 270-452 (665)
324 KOG4814|consensus 94.5 1.4 3E-05 39.0 12.5 69 63-142 389-457 (872)
325 COG5191 Uncharacterized conser 94.5 0.06 1.3E-06 43.1 4.1 82 61-153 100-182 (435)
326 PF07720 TPR_3: Tetratricopept 94.5 0.21 4.5E-06 26.4 5.0 32 69-100 2-35 (36)
327 PF10373 EST1_DNA_bind: Est1 D 94.3 0.19 4.2E-06 39.7 7.0 62 87-159 1-62 (278)
328 PF10579 Rapsyn_N: Rapsyn N-te 94.3 0.62 1.4E-05 29.3 7.6 65 69-141 7-71 (80)
329 PRK15180 Vi polysaccharide bio 94.3 0.18 3.9E-06 42.8 6.7 115 62-187 317-431 (831)
330 TIGR02561 HrpB1_HrpK type III 94.2 0.43 9.3E-06 34.1 7.6 74 123-197 20-93 (153)
331 PF12968 DUF3856: Domain of Un 94.1 0.8 1.7E-05 31.5 8.4 88 4-97 42-129 (144)
332 PF10516 SHNi-TPR: SHNi-TPR; 94.0 0.13 2.7E-06 27.6 3.6 30 69-98 2-31 (38)
333 COG3914 Spy Predicted O-linked 93.8 0.46 1E-05 41.2 8.3 120 85-215 48-176 (620)
334 KOG0529|consensus 93.7 0.62 1.4E-05 38.7 8.7 102 80-192 87-194 (421)
335 PF07721 TPR_4: Tetratricopept 93.6 0.098 2.1E-06 25.3 2.6 23 149-171 3-25 (26)
336 COG3629 DnrI DNA-binding trans 93.6 0.64 1.4E-05 37.0 8.3 64 107-176 153-216 (280)
337 KOG2041|consensus 93.3 1.5 3.2E-05 39.3 10.6 85 63-170 791-875 (1189)
338 PF04910 Tcf25: Transcriptiona 93.2 1 2.3E-05 37.4 9.4 86 94-190 32-147 (360)
339 KOG1258|consensus 93.1 2.6 5.6E-05 36.8 11.8 130 61-202 290-420 (577)
340 COG3629 DnrI DNA-binding trans 92.9 1 2.2E-05 35.9 8.5 67 65-142 150-216 (280)
341 COG2909 MalT ATP-dependent tra 92.9 3.9 8.5E-05 37.5 12.9 132 17-162 415-552 (894)
342 KOG0985|consensus 92.8 2 4.4E-05 40.2 11.1 113 66-191 1131-1259(1666)
343 PF10579 Rapsyn_N: Rapsyn N-te 92.8 1.5 3.2E-05 27.7 7.4 53 123-175 16-71 (80)
344 PF15015 NYD-SP12_N: Spermatog 92.7 1 2.2E-05 37.8 8.4 105 24-140 183-289 (569)
345 KOG1839|consensus 92.2 1.5 3.3E-05 41.6 9.9 109 63-177 968-1087(1236)
346 PF11817 Foie-gras_1: Foie gra 92.2 3.7 8E-05 32.1 10.9 71 64-140 174-245 (247)
347 KOG1839|consensus 92.1 1.6 3.5E-05 41.5 9.9 151 11-176 967-1128(1236)
348 PF11207 DUF2989: Protein of u 92.1 2.6 5.7E-05 31.8 9.4 75 83-168 121-199 (203)
349 PF07721 TPR_4: Tetratricopept 92.0 0.25 5.4E-06 23.8 2.7 24 69-92 2-25 (26)
350 COG4649 Uncharacterized protei 91.4 4.2 9.1E-05 30.1 9.4 99 70-175 96-195 (221)
351 PF10345 Cohesin_load: Cohesin 91.3 10 0.00023 33.9 15.4 142 17-175 59-207 (608)
352 KOG0546|consensus 91.3 0.15 3.2E-06 41.5 2.2 126 27-164 232-360 (372)
353 COG2909 MalT ATP-dependent tra 90.7 14 0.0003 34.2 15.7 157 14-177 344-527 (894)
354 KOG1914|consensus 90.6 2.4 5.2E-05 36.8 8.7 138 62-212 14-167 (656)
355 KOG3783|consensus 90.5 11 0.00024 32.8 14.5 37 9-46 259-295 (546)
356 PF10255 Paf67: RNA polymerase 90.2 0.68 1.5E-05 38.9 5.2 52 123-175 132-192 (404)
357 TIGR03504 FimV_Cterm FimV C-te 89.8 0.89 1.9E-05 25.2 3.9 25 151-175 3-27 (44)
358 PF10255 Paf67: RNA polymerase 89.8 1.7 3.7E-05 36.6 7.2 130 70-209 124-264 (404)
359 KOG4014|consensus 89.8 6.9 0.00015 29.3 11.7 142 16-191 33-210 (248)
360 KOG1463|consensus 89.7 9.8 0.00021 31.2 11.0 145 62-212 162-318 (411)
361 COG4649 Uncharacterized protei 89.6 6.9 0.00015 29.0 13.2 128 73-210 63-195 (221)
362 COG3947 Response regulator con 89.5 1.6 3.4E-05 35.0 6.4 51 123-173 289-339 (361)
363 smart00386 HAT HAT (Half-A-TPR 89.4 1.2 2.7E-05 21.9 4.2 27 128-154 2-28 (33)
364 COG3947 Response regulator con 89.2 1.7 3.7E-05 34.7 6.4 60 69-139 280-339 (361)
365 PF11207 DUF2989: Protein of u 89.0 1.5 3.3E-05 33.0 5.8 60 66-133 139-198 (203)
366 KOG0686|consensus 88.9 13 0.00028 31.3 12.7 115 68-190 150-280 (466)
367 PF10345 Cohesin_load: Cohesin 88.5 18 0.00039 32.5 19.2 116 63-185 54-179 (608)
368 KOG0890|consensus 88.5 12 0.00026 38.4 12.6 117 62-191 1664-1799(2382)
369 PF11817 Foie-gras_1: Foie gra 87.7 6.9 0.00015 30.6 9.1 86 83-174 153-245 (247)
370 COG5536 BET4 Protein prenyltra 87.5 9.4 0.0002 30.5 9.4 126 62-192 102-238 (328)
371 PF12854 PPR_1: PPR repeat 87.1 2 4.3E-05 22.1 4.0 27 146-172 6-32 (34)
372 KOG3616|consensus 86.6 23 0.00049 32.5 12.2 52 108-173 766-817 (1636)
373 KOG3807|consensus 86.5 9.5 0.00021 31.3 9.2 93 73-178 189-306 (556)
374 smart00386 HAT HAT (Half-A-TPR 86.5 1.5 3.3E-05 21.5 3.4 30 161-190 1-30 (33)
375 PRK13184 pknD serine/threonine 86.1 9.6 0.00021 35.9 10.3 130 25-182 483-626 (932)
376 KOG3616|consensus 85.8 24 0.00053 32.3 12.0 149 24-173 713-908 (1636)
377 PF14863 Alkyl_sulf_dimr: Alky 85.0 9.9 0.00021 27.0 7.8 53 107-165 70-122 (141)
378 KOG0890|consensus 84.7 12 0.00026 38.3 10.5 22 22-44 1388-1409(2382)
379 cd02682 MIT_AAA_Arch MIT: doma 84.4 7.8 0.00017 24.2 7.4 31 67-97 5-35 (75)
380 KOG2422|consensus 83.8 18 0.00039 31.9 10.1 117 80-202 250-398 (665)
381 PF11846 DUF3366: Domain of un 83.7 8.7 0.00019 28.7 7.7 51 129-180 127-177 (193)
382 PF14863 Alkyl_sulf_dimr: Alky 83.3 4.3 9.4E-05 28.8 5.5 51 146-197 69-119 (141)
383 TIGR03504 FimV_Cterm FimV C-te 83.1 2.4 5.2E-05 23.5 3.3 26 111-142 3-28 (44)
384 KOG2581|consensus 83.1 27 0.00059 29.5 11.2 73 67-146 208-280 (493)
385 PRK15490 Vi polysaccharide bio 82.8 23 0.00051 31.4 10.7 87 78-180 18-104 (578)
386 COG4455 ImpE Protein of avirul 82.8 5.7 0.00012 30.6 6.1 60 123-182 11-70 (273)
387 PF00244 14-3-3: 14-3-3 protei 82.4 17 0.00037 28.3 9.0 46 130-175 143-197 (236)
388 PF04190 DUF410: Protein of un 82.3 23 0.00049 28.0 10.6 80 53-142 75-170 (260)
389 PF10952 DUF2753: Protein of u 81.6 11 0.00024 26.1 6.6 70 71-146 4-87 (140)
390 PF04212 MIT: MIT (microtubule 81.5 6.1 0.00013 24.0 5.1 30 68-97 5-34 (69)
391 PF04053 Coatomer_WDAD: Coatom 81.4 13 0.00029 31.9 8.6 43 126-173 331-373 (443)
392 PF04053 Coatomer_WDAD: Coatom 81.4 34 0.00074 29.4 11.1 45 79-139 329-373 (443)
393 cd02682 MIT_AAA_Arch MIT: doma 80.5 12 0.00025 23.5 6.5 10 139-148 39-48 (75)
394 PF09205 DUF1955: Domain of un 79.8 17 0.00037 25.7 7.1 55 123-177 96-150 (161)
395 COG5107 RNA14 Pre-mRNA 3'-end 79.2 23 0.00049 30.5 9.0 139 62-212 36-191 (660)
396 cd02681 MIT_calpain7_1 MIT: do 78.5 7.7 0.00017 24.3 4.8 31 67-97 5-35 (76)
397 COG4455 ImpE Protein of avirul 78.4 26 0.00056 27.1 8.3 62 75-147 8-69 (273)
398 KOG1464|consensus 78.2 34 0.00073 27.5 9.8 166 5-177 49-261 (440)
399 COG4941 Predicted RNA polymera 77.3 12 0.00027 30.7 6.7 95 82-188 310-406 (415)
400 PF13041 PPR_2: PPR repeat fam 76.7 11 0.00023 21.0 5.8 31 107-143 3-33 (50)
401 KOG0985|consensus 76.7 74 0.0016 30.6 12.8 151 32-208 1062-1246(1666)
402 KOG2041|consensus 76.6 40 0.00087 30.8 10.1 72 19-91 798-875 (1189)
403 cd02683 MIT_1 MIT: domain cont 75.9 9.3 0.0002 24.0 4.7 28 70-97 8-35 (77)
404 PF01535 PPR: PPR repeat; Int 75.7 6.2 0.00013 19.0 3.3 25 150-174 3-27 (31)
405 PF04212 MIT: MIT (microtubule 75.6 8.9 0.00019 23.2 4.5 22 153-174 11-32 (69)
406 PF11846 DUF3366: Domain of un 75.2 13 0.00029 27.7 6.3 50 84-145 127-176 (193)
407 PF13041 PPR_2: PPR repeat fam 74.5 11 0.00024 20.9 4.5 32 146-177 2-33 (50)
408 PF02064 MAS20: MAS20 protein 74.1 9.6 0.00021 26.3 4.7 32 70-101 65-96 (121)
409 PF04190 DUF410: Protein of un 73.4 44 0.00095 26.4 9.8 26 145-170 88-113 (260)
410 KOG2758|consensus 72.8 52 0.0011 27.1 13.0 155 10-183 122-324 (432)
411 KOG0276|consensus 71.3 30 0.00064 30.9 7.9 34 64-97 662-695 (794)
412 cd02681 MIT_calpain7_1 MIT: do 71.3 12 0.00026 23.4 4.3 22 154-175 13-34 (76)
413 cd02677 MIT_SNX15 MIT: domain 71.2 7.1 0.00015 24.4 3.3 14 161-174 20-33 (75)
414 KOG3783|consensus 71.2 48 0.001 29.0 9.1 87 63-158 262-349 (546)
415 KOG4014|consensus 71.0 34 0.00073 25.7 7.1 109 67-191 33-154 (248)
416 PF08238 Sel1: Sel1 repeat; I 70.9 13 0.00027 19.2 4.5 15 162-176 23-37 (39)
417 PHA02537 M terminase endonucle 70.4 7.6 0.00016 30.1 3.9 97 78-180 93-211 (230)
418 PF09670 Cas_Cas02710: CRISPR- 70.2 65 0.0014 27.1 11.4 72 13-97 125-198 (379)
419 smart00671 SEL1 Sel1-like repe 70.1 12 0.00027 18.7 3.7 13 162-174 20-32 (36)
420 cd02683 MIT_1 MIT: domain cont 69.6 13 0.00028 23.4 4.2 20 163-182 29-48 (77)
421 KOG1497|consensus 69.6 32 0.0007 28.1 7.3 96 106-208 102-210 (399)
422 PRK11619 lytic murein transgly 68.4 95 0.0021 28.3 13.3 93 71-175 282-374 (644)
423 KOG2561|consensus 68.4 72 0.0016 27.4 9.3 103 68-176 163-296 (568)
424 cd02678 MIT_VPS4 MIT: domain c 68.2 19 0.00041 22.3 4.8 29 69-97 7-35 (75)
425 KOG0687|consensus 67.5 69 0.0015 26.4 12.2 108 64-177 100-211 (393)
426 KOG1464|consensus 67.5 28 0.00061 27.9 6.5 50 126-175 40-93 (440)
427 smart00745 MIT Microtubule Int 67.3 20 0.00043 22.2 4.9 28 70-97 10-37 (77)
428 cd02679 MIT_spastin MIT: domai 66.9 20 0.00044 22.6 4.7 30 68-97 8-37 (79)
429 KOG1463|consensus 66.6 57 0.0012 27.1 8.2 100 71-176 131-238 (411)
430 cd02680 MIT_calpain7_2 MIT: do 65.9 18 0.0004 22.6 4.3 30 68-97 6-35 (75)
431 TIGR00756 PPR pentatricopeptid 65.5 15 0.00032 17.9 3.8 26 150-175 3-28 (35)
432 COG5091 SGT1 Suppressor of G2 63.7 15 0.00032 29.2 4.3 98 78-180 5-112 (368)
433 PF05053 Menin: Menin; InterP 63.0 24 0.00052 31.1 5.8 70 65-140 274-345 (618)
434 PF12753 Nro1: Nuclear pore co 62.9 17 0.00037 30.5 4.8 44 129-174 334-389 (404)
435 cd02656 MIT MIT: domain contai 62.9 28 0.0006 21.4 4.9 27 71-97 9-35 (75)
436 cd02679 MIT_spastin MIT: domai 61.8 20 0.00042 22.7 3.9 17 128-144 4-20 (79)
437 COG5107 RNA14 Pre-mRNA 3'-end 61.7 1.1E+02 0.0024 26.6 12.8 54 123-176 442-495 (660)
438 PF05053 Menin: Menin; InterP 61.5 40 0.00088 29.8 6.9 62 130-191 296-368 (618)
439 cd02677 MIT_SNX15 MIT: domain 61.4 29 0.00064 21.6 4.7 28 70-97 8-35 (75)
440 PF06957 COPI_C: Coatomer (COP 61.3 1.1E+02 0.0023 26.3 10.5 118 67-184 203-337 (422)
441 PF10952 DUF2753: Protein of u 60.7 49 0.0011 23.0 5.9 75 110-190 4-102 (140)
442 PF09205 DUF1955: Domain of un 60.4 59 0.0013 23.1 6.7 62 71-143 88-150 (161)
443 cd02684 MIT_2 MIT: domain cont 59.8 32 0.0007 21.4 4.7 28 70-97 8-35 (75)
444 TIGR02710 CRISPR-associated pr 59.8 1.1E+02 0.0023 25.9 11.3 70 64-137 124-195 (380)
445 KOG4151|consensus 59.1 24 0.00052 32.2 5.4 82 63-155 86-169 (748)
446 PF09797 NatB_MDM20: N-acetylt 59.1 33 0.00071 28.5 6.1 47 81-138 196-242 (365)
447 cd00280 TRFH Telomeric Repeat 59.1 30 0.00065 25.9 5.0 48 75-134 118-165 (200)
448 smart00745 MIT Microtubule Int 59.1 27 0.00059 21.5 4.4 15 165-179 33-47 (77)
449 COG5159 RPN6 26S proteasome re 59.0 97 0.0021 25.2 10.1 145 62-212 159-316 (421)
450 KOG0276|consensus 59.0 35 0.00076 30.5 6.1 49 123-176 647-695 (794)
451 PF02064 MAS20: MAS20 protein 58.5 32 0.0007 23.7 4.9 29 153-181 69-97 (121)
452 cd02680 MIT_calpain7_2 MIT: do 58.4 25 0.00055 22.0 4.0 23 154-176 13-35 (75)
453 PF15469 Sec5: Exocyst complex 57.2 60 0.0013 23.9 6.7 65 123-187 96-179 (182)
454 PF09797 NatB_MDM20: N-acetylt 57.0 35 0.00076 28.4 5.9 47 127-173 197-243 (365)
455 TIGR00985 3a0801s04tom mitocho 56.1 33 0.00071 24.6 4.7 32 70-101 92-124 (148)
456 KOG1538|consensus 56.1 1.6E+02 0.0035 26.9 11.7 47 124-173 784-830 (1081)
457 cd02678 MIT_VPS4 MIT: domain c 55.6 35 0.00075 21.1 4.4 20 155-174 14-33 (75)
458 PF02184 HAT: HAT (Half-A-TPR) 55.5 28 0.0006 17.8 3.3 25 129-154 3-27 (32)
459 PF01239 PPTA: Protein prenylt 55.2 25 0.00055 17.3 4.1 25 133-157 3-27 (31)
460 COG5536 BET4 Protein prenyltra 54.5 1.1E+02 0.0025 24.6 9.6 96 84-188 90-191 (328)
461 COG1747 Uncharacterized N-term 53.8 1.6E+02 0.0035 26.1 10.9 80 83-176 81-160 (711)
462 KOG4056|consensus 53.6 44 0.00095 23.6 4.8 31 71-101 84-114 (143)
463 cd02656 MIT MIT: domain contai 53.1 40 0.00086 20.7 4.4 18 157-174 16-33 (75)
464 KOG1497|consensus 52.4 1.3E+02 0.0029 24.8 10.6 103 66-175 101-212 (399)
465 PF08311 Mad3_BUB1_I: Mad3/BUB 52.2 76 0.0017 21.9 8.7 64 62-140 63-126 (126)
466 PF13812 PPR_3: Pentatricopept 52.2 28 0.00061 16.9 4.1 26 150-175 4-29 (34)
467 KOG0292|consensus 51.9 2.2E+02 0.0048 27.1 10.8 117 69-185 992-1122(1202)
468 KOG0292|consensus 51.6 1.1E+02 0.0024 28.9 8.1 116 17-149 991-1120(1202)
469 cd02684 MIT_2 MIT: domain cont 51.2 43 0.00094 20.8 4.3 19 156-174 15-33 (75)
470 PF12753 Nro1: Nuclear pore co 51.0 28 0.00061 29.3 4.2 52 84-142 334-391 (404)
471 KOG1920|consensus 50.3 1.1E+02 0.0023 29.9 8.1 18 123-140 1009-1026(1265)
472 KOG0686|consensus 49.5 1.7E+02 0.0036 25.1 10.7 146 19-184 152-312 (466)
473 PF06957 COPI_C: Coatomer (COP 49.3 61 0.0013 27.7 6.0 25 123-147 310-334 (422)
474 PF12739 TRAPPC-Trs85: ER-Golg 48.8 1.7E+02 0.0037 24.9 10.5 102 69-176 209-329 (414)
475 smart00299 CLH Clathrin heavy 48.1 90 0.002 21.5 7.5 31 81-116 20-50 (140)
476 PRK15490 Vi polysaccharide bio 47.6 2.1E+02 0.0046 25.7 10.9 62 63-137 37-98 (578)
477 COG5187 RPN7 26S proteasome re 46.6 1.6E+02 0.0035 24.0 11.2 104 72-181 79-189 (412)
478 COG5290 IkappaB kinase complex 46.1 1.1E+02 0.0023 28.7 7.2 23 151-173 939-961 (1243)
479 PF14852 Fis1_TPR_N: Fis1 N-te 45.3 43 0.00094 17.4 3.0 30 148-177 2-34 (35)
480 PF13226 DUF4034: Domain of un 45.2 1.6E+02 0.0035 23.6 11.1 110 76-191 8-143 (277)
481 COG4259 Uncharacterized protei 44.0 97 0.0021 20.7 6.0 42 144-185 69-110 (121)
482 KOG2114|consensus 43.3 2.7E+02 0.0058 26.3 9.2 33 65-97 365-397 (933)
483 PF15469 Sec5: Exocyst complex 40.2 1.4E+02 0.0031 21.9 6.4 75 78-152 96-178 (182)
484 PF08311 Mad3_BUB1_I: Mad3/BUB 40.1 1.2E+02 0.0027 20.9 9.7 44 131-174 81-126 (126)
485 cd00280 TRFH Telomeric Repeat 38.5 89 0.0019 23.5 4.8 37 123-160 121-157 (200)
486 COG5159 RPN6 26S proteasome re 37.7 2.3E+02 0.0049 23.2 9.6 100 71-176 128-235 (421)
487 COG4941 Predicted RNA polymera 37.0 2.4E+02 0.0052 23.6 7.3 70 74-154 335-406 (415)
488 PF12583 TPPII_N: Tripeptidyl 36.5 1.5E+02 0.0033 20.8 5.6 35 123-157 86-120 (139)
489 COG5187 RPN7 26S proteasome re 36.1 2.4E+02 0.0052 23.1 12.8 107 64-176 111-221 (412)
490 KOG4459|consensus 35.9 93 0.002 26.8 5.1 29 19-48 33-61 (471)
491 PF15297 CKAP2_C: Cytoskeleton 35.6 1.6E+02 0.0035 24.5 6.2 50 130-179 120-172 (353)
492 TIGR00985 3a0801s04tom mitocho 34.0 1.2E+02 0.0025 21.8 4.7 26 123-148 100-126 (148)
493 KOG4279|consensus 33.7 43 0.00093 30.9 2.9 108 68-182 201-322 (1226)
494 KOG4563|consensus 33.6 97 0.0021 25.9 4.7 57 108-170 42-106 (400)
495 PF08969 USP8_dimer: USP8 dime 33.4 1.4E+02 0.003 20.1 4.9 34 65-98 35-68 (115)
496 KOG2582|consensus 32.6 2.2E+02 0.0048 24.0 6.5 103 67-176 101-212 (422)
497 TIGR02996 rpt_mate_G_obs repea 31.6 94 0.002 17.0 3.5 32 135-166 4-35 (42)
498 PF03745 DUF309: Domain of unk 31.6 1.2E+02 0.0025 18.1 5.8 57 72-135 3-61 (62)
499 PF04348 LppC: LppC putative l 31.0 16 0.00035 32.2 0.0 98 65-172 21-123 (536)
500 KOG4056|consensus 30.8 1.5E+02 0.0033 21.0 4.7 31 153-183 87-117 (143)
No 1
>KOG4626|consensus
Probab=99.93 E-value=1.5e-25 Score=185.65 Aligned_cols=188 Identities=15% Similarity=0.213 Sum_probs=172.3
Q ss_pred CCCccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy13014 1 MKPLPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFR 80 (229)
Q Consensus 1 ~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 80 (229)
|++-+|+++++.+|+++.++..+|..+... |+..++..+|.+++ ...|+.+++..++|+++..
T Consensus 304 lAI~~Ykral~~~P~F~~Ay~NlanALkd~-G~V~ea~~cYnkaL----------------~l~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 304 LAIDTYKRALELQPNFPDAYNNLANALKDK-GSVTEAVDCYNKAL----------------RLCPNHADAMNNLGNIYRE 366 (966)
T ss_pred HHHHHHHHHHhcCCCchHHHhHHHHHHHhc-cchHHHHHHHHHHH----------------HhCCccHHHHHHHHHHHHH
Confidence 356688899999999999999999999888 99999999998887 5778899999999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q psy13014 81 LNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQS 160 (229)
Q Consensus 81 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 160 (229)
+|.+++|...|.+++..+|.. +.++.++|.+ |.++|++++|+.+|++++.+.|.-+.++.++|..|..+
T Consensus 367 ~~~~e~A~~ly~~al~v~p~~-----aaa~nNLa~i------~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALEVFPEF-----AAAHNNLASI------YKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEM 435 (966)
T ss_pred hccchHHHHHHHHHHhhChhh-----hhhhhhHHHH------HHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHh
Confidence 999999999999999999998 9999999999 99999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCccc
Q psy13014 161 DKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQI 217 (229)
Q Consensus 161 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~ 217 (229)
|+...|+++|.+++.++|...+++.+++.++ +..++..+|+..|+.++ ++|+.+..
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~-kDsGni~~AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIY-KDSGNIPEAIQSYRTALKLKPDFPDA 492 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHh-hccCCcHHHHHHHHHHHccCCCCchh
Confidence 9999999999999999999999999999999 88899999999999999 99976543
No 2
>KOG4626|consensus
Probab=99.91 E-value=2.7e-24 Score=178.36 Aligned_cols=204 Identities=19% Similarity=0.204 Sum_probs=179.7
Q ss_pred ccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH------------------HHhhhhhhhHH
Q psy13014 4 LPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHV------------------LFYLFCSQKLE 65 (229)
Q Consensus 4 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~ 65 (229)
.-|.++++++|+++.+++.+|.++... +.++.|...|.+++...+..... -.|..+....|
T Consensus 239 q~y~eAvkldP~f~dAYiNLGnV~ke~-~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P 317 (966)
T KOG4626|consen 239 QHYEEAVKLDPNFLDAYINLGNVYKEA-RIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP 317 (966)
T ss_pred HHHHHhhcCCCcchHHHhhHHHHHHHH-hcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC
Confidence 458899999999999999999999999 99999999998887543211111 11334556778
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
+.+.++.++|+++-..|+..+|+.+|++++.+.|.+ +++.+++|.+ +..+|..+.|...|.++++..|.
T Consensus 318 ~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h-----adam~NLgni------~~E~~~~e~A~~ly~~al~v~p~ 386 (966)
T KOG4626|consen 318 NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH-----ADAMNNLGNI------YREQGKIEEATRLYLKALEVFPE 386 (966)
T ss_pred CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc-----HHHHHHHHHH------HHHhccchHHHHHHHHHHhhChh
Confidence 899999999999999999999999999999999999 9999999999 99999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcccccC
Q psy13014 146 YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQIQHN 220 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~~~ 220 (229)
.+.++.++|.+|.+.|++++|+.+|+.++++.|...+++.++|..+ ..+++...|+..|.+++ ++|.......|
T Consensus 387 ~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~-ke~g~v~~A~q~y~rAI~~nPt~AeAhsN 461 (966)
T KOG4626|consen 387 FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTY-KEMGDVSAAIQCYTRAIQINPTFAEAHSN 461 (966)
T ss_pred hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHH-HHhhhHHHHHHHHHHHHhcCcHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999 89999999999999999 99944443333
No 3
>KOG1126|consensus
Probab=99.87 E-value=3.4e-22 Score=166.89 Aligned_cols=185 Identities=16% Similarity=0.186 Sum_probs=165.7
Q ss_pred CccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc
Q psy13014 3 PLPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN 82 (229)
Q Consensus 3 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 82 (229)
+.+|++|+++||++.+++.++|.-+... ..++.|..+|.+++ ..+|..-.+|+.+|.+|.+++
T Consensus 441 ik~f~RAiQldp~faYayTLlGhE~~~~-ee~d~a~~~fr~Al----------------~~~~rhYnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 441 IKCFKRAIQLDPRFAYAYTLLGHESIAT-EEFDKAMKSFRKAL----------------GVDPRHYNAWYGLGTVYLKQE 503 (638)
T ss_pred HHHHHHhhccCCccchhhhhcCChhhhh-HHHHhHHHHHHhhh----------------cCCchhhHHHHhhhhheeccc
Confidence 3456667777777777777777666666 66777777776666 678899999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhccc
Q psy13014 83 QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK 162 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 162 (229)
+++.|.-+|++|+.++|.+ ..+...+|.+ +.++|+.++|+..+++|+.++|.++-.-+..|.+++.+++
T Consensus 504 k~e~Ae~~fqkA~~INP~n-----svi~~~~g~~------~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 504 KLEFAEFHFQKAVEINPSN-----SVILCHIGRI------QHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred hhhHHHHHHHhhhcCCccc-----hhHHhhhhHH------HHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Confidence 9999999999999999999 9999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 163 LDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 163 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
+++|+..+++..++-|++..+++.+|.++ .+++....|++.|.-+. +||..-+
T Consensus 573 ~~eal~~LEeLk~~vP~es~v~~llgki~-k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 573 YVEALQELEELKELVPQESSVFALLGKIY-KRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hHHHHHHHHHHHHhCcchHHHHHHHHHHH-HHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999999999999999 89999999999999999 9995433
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=4.9e-21 Score=167.96 Aligned_cols=181 Identities=10% Similarity=0.101 Sum_probs=169.1
Q ss_pred chhhccc---CCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc
Q psy13014 6 YQQELSK---NPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN 82 (229)
Q Consensus 6 ~~~~l~~---~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 82 (229)
|+++++. +|+...++..+|.++... |++++|...+++++ ...|.....+..+|.++...|
T Consensus 317 ~~~al~~~~~~~~~a~a~~~lg~~~~~~-g~~~eA~~~~~kal----------------~l~P~~~~~~~~la~~~~~~g 379 (615)
T TIGR00990 317 FEKALDLGKLGEKEAIALNLRGTFKCLK-GKHLEALADLSKSI----------------ELDPRVTQSYIKRASMNLELG 379 (615)
T ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------HcCCCcHHHHHHHHHHHHHCC
Confidence 4556654 588888999999999999 99999999999888 567888889999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhccc
Q psy13014 83 QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK 162 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 162 (229)
++++|+..|++++..+|++ +.+++.+|.+ ++.+|++++|+.+|++++.++|++..++..+|.++..+|+
T Consensus 380 ~~~eA~~~~~~al~~~p~~-----~~~~~~lg~~------~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 380 DPDKAEEDFDKALKLNSED-----PDIYYHRAQL------HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS 448 (615)
T ss_pred CHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999 9999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCc
Q psy13014 163 LDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQP 215 (229)
Q Consensus 163 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~ 215 (229)
+++|+..|++++...|+++.++..+|.++ ...+++.+|++.|.+++ ++|.+.
T Consensus 449 ~~eA~~~~~~al~~~P~~~~~~~~lg~~~-~~~g~~~~A~~~~~~Al~l~p~~~ 501 (615)
T TIGR00990 449 IASSMATFRRCKKNFPEAPDVYNYYGELL-LDQNKFDEAIEKFDTAIELEKETK 501 (615)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHccCHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999 88999999999999999 888643
No 5
>KOG1126|consensus
Probab=99.86 E-value=5.5e-22 Score=165.62 Aligned_cols=200 Identities=18% Similarity=0.182 Sum_probs=173.1
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH-------HHHHHHHHH-----------hhhhhhhHHH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFY-------IQFIFHVLF-----------YLFCSQKLEQ 66 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~-----------~~~~~~~~~~ 66 (229)
.|++.-+.-++-..++..+|..++++ +++.+|...|+..-.. +..+...+. .......++.
T Consensus 341 ~~~klp~h~~nt~wvl~q~GrayFEl-~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~ 419 (638)
T KOG1126|consen 341 LFEKLPSHHYNTGWVLSQLGRAYFEL-IEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPN 419 (638)
T ss_pred HHHhhHHhcCCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCC
Confidence 34454445566678899999999999 9999999999765432 222222222 1234467788
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
.|..|..+|+++.-+++++.|+++|++|+.++|.. +.+|..+|.= +....+++.|..+|++|+..+|.+
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f-----aYayTLlGhE------~~~~ee~d~a~~~fr~Al~~~~rh 488 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF-----AYAYTLLGHE------SIATEEFDKAMKSFRKALGVDPRH 488 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc-----chhhhhcCCh------hhhhHHHHhHHHHHHhhhcCCchh
Confidence 99999999999999999999999999999999998 9999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCccc
Q psy13014 147 LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQI 217 (229)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~ 217 (229)
-.+||.+|.+|.++++++.|.-.|++|++++|.+......+|.++ .++++.++|++.+.+++ ++|.|+-.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~-~~~k~~d~AL~~~~~A~~ld~kn~l~ 559 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQ-HQLKRKDKALQLYEKAIHLDPKNPLC 559 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHH-HHhhhhhHHHHHHHHHHhcCCCCchh
Confidence 999999999999999999999999999999999999999999998 89999999999999999 99987643
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=5.2e-20 Score=161.54 Aligned_cols=184 Identities=11% Similarity=0.146 Sum_probs=156.9
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.|+++++.+|++..+++.+|.++... |++++|...|++++ ...|.++.+++.+|.+++..|++
T Consensus 353 ~~~kal~l~P~~~~~~~~la~~~~~~-g~~~eA~~~~~~al----------------~~~p~~~~~~~~lg~~~~~~g~~ 415 (615)
T TIGR00990 353 DLSKSIELDPRVTQSYIKRASMNLEL-GDPDKAEEDFDKAL----------------KLNSEDPDIYYHRAQLHFIKGEF 415 (615)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHH----------------HhCCCCHHHHHHHHHHHHHcCCH
Confidence 47889999999999999999999999 99999999999887 45677888999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHH
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD 164 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 164 (229)
++|+.+|++++.++|++ ..++.++|.+ +..+|++++|+..|++++...|+++.++..+|.++...|+++
T Consensus 416 ~~A~~~~~kal~l~P~~-----~~~~~~la~~------~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 416 AQAGKDYQKSIDLDPDF-----IFSHIQLGVT------QYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HHHHHHHHHHHHcCccC-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHH
Confidence 99999999999999998 8889999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHH------hccCchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 165 EALADYQKILELDPNNRDAYVA------TKVSPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 165 ~A~~~~~~al~~~p~~~~~~~~------l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
+|+..|+++++++|.+...+.+ .+.++....+++.+|.+.+++++ ++|++..
T Consensus 485 ~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~ 543 (615)
T TIGR00990 485 EAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI 543 (615)
T ss_pred HHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 9999999999998875443322 12222144577888888888888 8876643
No 7
>PRK12370 invasion protein regulator; Provisional
Probab=99.83 E-value=9.4e-20 Score=157.76 Aligned_cols=180 Identities=9% Similarity=-0.012 Sum_probs=162.0
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhh---------hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFS---------EIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEG 75 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 75 (229)
.|+++++.+|+++.++..+|.++... + ++.+|...+++++ ...|+++.++..+|
T Consensus 283 ~~~~Al~ldP~~a~a~~~La~~~~~~-~~~g~~~~~~~~~~A~~~~~~Al----------------~ldP~~~~a~~~lg 345 (553)
T PRK12370 283 LLTQCVNMSPNSIAPYCALAECYLSM-AQMGIFDKQNAMIKAKEHAIKAT----------------ELDHNNPQALGLLG 345 (553)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHH-HHcCCcccchHHHHHHHHHHHHH----------------hcCCCCHHHHHHHH
Confidence 47899999999999999999887655 3 3678888888777 67899999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q psy13014 76 NALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRAR 155 (229)
Q Consensus 76 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 155 (229)
.++...|++++|+..|+++++++|++ +.+++.+|.+ +...|++++|+..++++++++|.++.+++.++.
T Consensus 346 ~~~~~~g~~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~------l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~ 414 (553)
T PRK12370 346 LINTIHSEYIVGSLLFKQANLLSPIS-----ADIKYYYGWN------LFMAGQLEEALQTINECLKLDPTRAAAGITKLW 414 (553)
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 99999999999999999999999999 9999999999 999999999999999999999999888777888
Q ss_pred HHHhcccHHHHHHHHHHHHHhC-CCcHHHHHHhccCchHHHhhhhhccccccccc-ccCC
Q psy13014 156 LYQQSDKLDEALADYQKILELD-PNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPG 213 (229)
Q Consensus 156 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~ 213 (229)
++...|++++|+..+++++... |+++.++..++.++ ...++..+|...+.++. ..|.
T Consensus 415 ~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l-~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFL-SLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHH-HhCCCHHHHHHHHHHhhhccch
Confidence 8888999999999999999885 78899999999998 78899999999888876 5554
No 8
>KOG1125|consensus
Probab=99.81 E-value=1.5e-19 Score=149.19 Aligned_cols=196 Identities=12% Similarity=0.129 Sum_probs=176.8
Q ss_pred CccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc
Q psy13014 3 PLPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN 82 (229)
Q Consensus 3 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 82 (229)
.|.|+.+++.+|.+.++|..+|.+.... ++-..++..+.+++ +.+|.+..++..+|..|...|
T Consensus 305 ~LafEAAVkqdP~haeAW~~LG~~qaEN-E~E~~ai~AL~rcl----------------~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 305 ALAFEAAVKQDPQHAEAWQKLGITQAEN-ENEQNAISALRRCL----------------ELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHHHHHhhChHHHHHHHHhhhHhhhc-cchHHHHHHHHHHH----------------hcCCccHHHHHHHHHHHhhhh
Confidence 4789999999999999999999999999 99999999998888 788999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCc--------------------------------------hhhHHHHHhHhhhhhhhHHhh
Q psy13014 83 QWSESLAKYNEALRSCPRSCS--------------------------------------VSRAVFYANRSAALEKLASYL 124 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~--------------------------------------~~~~~~~~~lg~~~~~~~~~~ 124 (229)
.-.+|..++.+-+...|.... ...+++...||.+ |.
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL------y~ 441 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL------YN 441 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH------Hh
Confidence 999999999998877644311 1347888899999 99
Q ss_pred ccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcccc
Q psy13014 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKL 204 (229)
Q Consensus 125 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~ 204 (229)
..|+|++|+.+|+.||..+|++...|.++|-.+....+.++||..|.+|+++.|....+++++|..| -.++.+.+|++.
T Consensus 442 ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~-mNlG~ykEA~~h 520 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC-MNLGAYKEAVKH 520 (579)
T ss_pred cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh-hhhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred ccccc-ccCCCcccccCCC
Q psy13014 205 SPDVF-LHPGQPQIQHNPE 222 (229)
Q Consensus 205 ~~~~~-~~p~~~~~~~~~~ 222 (229)
|-.++ +.++.......|.
T Consensus 521 lL~AL~mq~ks~~~~~~~~ 539 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPM 539 (579)
T ss_pred HHHHHHhhhcccccccCCc
Confidence 99999 8886555555443
No 9
>KOG1155|consensus
Probab=99.79 E-value=3.7e-18 Score=137.79 Aligned_cols=175 Identities=19% Similarity=0.229 Sum_probs=152.8
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
=|+++|++||+...+|.++|.-+..+ ++...|+..|.+++ +..|.+-.+|+.+|++|..++..
T Consensus 352 YFkRALkLNp~~~~aWTLmGHEyvEm-KNt~AAi~sYRrAv----------------di~p~DyRAWYGLGQaYeim~Mh 414 (559)
T KOG1155|consen 352 YFKRALKLNPKYLSAWTLMGHEYVEM-KNTHAAIESYRRAV----------------DINPRDYRAWYGLGQAYEIMKMH 414 (559)
T ss_pred HHHHHHhcCcchhHHHHHhhHHHHHh-cccHHHHHHHHHHH----------------hcCchhHHHHhhhhHHHHHhcch
Confidence 47899999999999999999999999 99999999999888 78899999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHH
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD 164 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 164 (229)
.=|+-+|++|+...|.+ +.+|..+|.| |.++++.++|+.+|.+++.....+..++..+|.+|.++++++
T Consensus 415 ~YaLyYfqkA~~~kPnD-----sRlw~aLG~C------Y~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 415 FYALYYFQKALELKPND-----SRLWVALGEC------YEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLN 483 (559)
T ss_pred HHHHHHHHHHHhcCCCc-----hHHHHHHHHH------HHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHH
Confidence 99999999999999998 9999999999 999999999999999999998888899999999999999999
Q ss_pred HHHHHHHHHHH-------hCCCcHHHHHHhccCchHHHhhhhhcccccccc
Q psy13014 165 EALADYQKILE-------LDPNNRDAYVATKVSPDLKLKEKNGATKLSPDV 208 (229)
Q Consensus 165 ~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 208 (229)
+|..+|++.++ .+|....+...|+.-. .+++++.+|.......
T Consensus 484 eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f-~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 484 EAAQYYEKYVEVSELEGEIDDETIKARLFLAEYF-KKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH-HhhcchHHHHHHHHHH
Confidence 99999999988 4566666766777666 7777777765544433
No 10
>KOG0553|consensus
Probab=99.79 E-value=1.4e-18 Score=133.76 Aligned_cols=122 Identities=38% Similarity=0.615 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
....+..+...|+-+.+.++|.+|+..|.+||.++|.+ +.+|.++|.+ |.++|+++.|++.++.+|.++
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n-----AVyycNRAAA------y~~Lg~~~~AVkDce~Al~iD 145 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN-----AVYYCNRAAA------YSKLGEYEDAVKDCESALSID 145 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-----chHHHHHHHH------HHHhcchHHHHHHHHHHHhcC
Confidence 45677889999999999999999999999999999999 9999999999 999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhh
Q psy13014 144 PSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKE 197 (229)
Q Consensus 144 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 197 (229)
|...++|.++|.+|..+|++++|++.|++++.++|++...+.+|..+. .++++
T Consensus 146 p~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae-~~l~e 198 (304)
T KOG0553|consen 146 PHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAE-QKLNE 198 (304)
T ss_pred hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHH-HHhcC
Confidence 999999999999999999999999999999999999999999998776 55444
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=3.5e-18 Score=154.62 Aligned_cols=198 Identities=11% Similarity=0.039 Sum_probs=143.5
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH----HHHH------------HHH-hhhhhhhHHHHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQ----FIFH------------VLF-YLFCSQKLEQTA 68 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~------------~~~-~~~~~~~~~~~~ 68 (229)
|.+++...|++. .+..+|.++... |++++|...|++....-+ .... ... +.......|...
T Consensus 499 ~~~Al~~~Pd~~-~~L~lA~al~~~-Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~ 576 (987)
T PRK09782 499 WLQAEQRQPDAW-QHRAVAYQAYQV-EDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDN 576 (987)
T ss_pred HHHHHHhCCchH-HHHHHHHHHHHC-CCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccH
Confidence 566777777654 355566666666 777777777766543100 0000 000 001112223344
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHH
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLK 148 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (229)
.....++......|++++|+..|++++.++| + +.++.++|.+ +.++|++++|+..+++++.++|+++.
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P-~-----~~a~~~LA~~------l~~lG~~deA~~~l~~AL~l~Pd~~~ 644 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLNIAP-S-----ANAYVARATI------YRQRHNVPAAVSDLRAALELEPNNSN 644 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-C-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 4444555555666888888888888888888 4 6778888888 88888888888888888888888888
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcccc
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQIQ 218 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~ 218 (229)
++.++|.++...|++++|+..|+++++++|+++.++.+++.++ ..++++.+|+..+.+++ ++|++..+.
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al-~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN-QRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 8888888888888888888888888888888888888888888 88888888888888888 888776654
No 12
>KOG4234|consensus
Probab=99.79 E-value=5.9e-18 Score=123.14 Aligned_cols=156 Identities=42% Similarity=0.621 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP 144 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 144 (229)
...+.-+..-|+-++..|+|.+|...|..|+.+.|......+..+|.++|.+ +++++.++.||..+.++|+++|
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa------~iKl~k~e~aI~dcsKaiel~p 165 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAA------LIKLRKWESAIEDCSKAIELNP 165 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHH------HHHhhhHHHHHHHHHhhHhcCc
Confidence 4566778889999999999999999999999999988777889999999999 9999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCch------HHHhh-hhhcccccccccccC-----
Q psy13014 145 SYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPD------LKLKE-KNGATKLSPDVFLHP----- 212 (229)
Q Consensus 145 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~------~~~~~-~~~a~~~~~~~~~~p----- 212 (229)
...+++.+.|.+|.++.+|++|+..|++.++.+|....+...+.++-. ++|+. +...++.++++++.|
T Consensus 166 ty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlGN~iL~pFGlSt 245 (271)
T KOG4234|consen 166 TYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLGNFILSPFGLST 245 (271)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Confidence 999999999999999999999999999999999999999999888864 33433 777899999999999
Q ss_pred CCcccccCCCCcCC
Q psy13014 213 GQPQIQHNPETIHG 226 (229)
Q Consensus 213 ~~~~~~~~~~~~~~ 226 (229)
+||+++++|.+...
T Consensus 246 dnFqmvqd~nTGsy 259 (271)
T KOG4234|consen 246 DNFQMVQDPNTGSY 259 (271)
T ss_pred cceeeeeCCCCCce
Confidence 99999999997653
No 13
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.79 E-value=8.6e-18 Score=120.62 Aligned_cols=110 Identities=11% Similarity=0.085 Sum_probs=106.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHH
Q psy13014 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVY 150 (229)
Q Consensus 71 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (229)
+...|.++...|++++|+..|++++..+|.+ ..++..+|.+ +..+|++++|+..|++++.++|+++.++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-----~~a~~~lg~~------~~~~g~~~~A~~~y~~Al~l~p~~~~a~ 95 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWS-----WRAHIALAGT------WMMLKEYTTAINFYGHALMLDASHPEPV 95 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHH------HHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 6678999999999999999999999999999 9999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 151 QRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 151 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
+++|.++..+|++++|+..|++++.+.|+++..+.+++.+.
T Consensus 96 ~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 96 YQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999888776
No 14
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.78 E-value=8e-18 Score=129.19 Aligned_cols=167 Identities=10% Similarity=0.052 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
...++.+|.++... |++++|...+++.+ ...|.+..++..+|.++...|++++|+..+++++.
T Consensus 31 ~~~~~~la~~~~~~-~~~~~A~~~~~~~l----------------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 93 (234)
T TIGR02521 31 AKIRVQLALGYLEQ-GDLEVAKENLDKAL----------------EHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT 93 (234)
T ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHH----------------HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45667777777777 77777777776665 34455566677777777777777777777777777
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN--PSYLKVYQRRARLYQQSDKLDEALADYQKIL 174 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 174 (229)
..|.+ ..++.++|.+ +...|++++|+..+++++... |.....+..+|.++...|++++|...+.+++
T Consensus 94 ~~~~~-----~~~~~~~~~~------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (234)
T TIGR02521 94 LNPNN-----GDVLNNYGTF------LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRAL 162 (234)
T ss_pred hCCCC-----HHHHHHHHHH------HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77766 6677777777 777777777777777776643 3445566667777777777777777777777
Q ss_pred HhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccC
Q psy13014 175 ELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 175 ~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
+.+|++...+..++.++ ...+++.+|...+.+++ ..|
T Consensus 163 ~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~~ 200 (234)
T TIGR02521 163 QIDPQRPESLLELAELY-YLRGQYKDARAYLERYQQTYN 200 (234)
T ss_pred HhCcCChHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCC
Confidence 77777777777777666 66666666666666665 444
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=8.3e-18 Score=152.19 Aligned_cols=195 Identities=9% Similarity=-0.099 Sum_probs=157.3
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH-----------------HHHH-hhhhhhhHHHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIF-----------------HVLF-YLFCSQKLEQT 67 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------------~~~~-~~~~~~~~~~~ 67 (229)
|++++...|. ...++..|.++... |++++|..++.+++...+... ..+. +.......|.
T Consensus 532 ~rka~~~~p~-~~a~~~la~all~~-Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~- 608 (987)
T PRK09782 532 WQKISLHDMS-NEDLLAAANTAQAA-GNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS- 608 (987)
T ss_pred HHHHhccCCC-cHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-
Confidence 4555554444 34456667777777 777777777765553210000 0000 1122234454
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
+.++..+|.++.+.|++++|+..|++++.++|++ +.++.++|.+ +...|++++|+..++++++++|+++
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~-----~~a~~nLG~a------L~~~G~~eeAi~~l~~AL~l~P~~~ 677 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN-----SNYQAALGYA------LWDSGDIAQSREMLERAHKGLPDDP 677 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 7889999999999999999999999999999999 9999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCc
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQP 215 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~ 215 (229)
.+++++|.++..+|++++|+..|+++++++|++..+....+.+. .....+..+.+.+.+.. +.|..+
T Consensus 678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~-~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 678 ALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQN-QQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHH-HHHHHHHHHHHHHHHHhhcCccch
Confidence 99999999999999999999999999999999999999999998 77777889999888888 877544
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.77 E-value=6.4e-18 Score=157.38 Aligned_cols=197 Identities=14% Similarity=0.065 Sum_probs=140.6
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.|+++++.+|+++.+++.+|.++... |++++|...|++++...+.......+.. .............|.++...|++
T Consensus 291 ~l~~aL~~~P~~~~a~~~Lg~~~~~~-g~~~eA~~~l~~Al~~~p~~~~~~~~~~--ll~~~~~~~~~~~g~~~~~~g~~ 367 (1157)
T PRK11447 291 ELQQAVRANPKDSEALGALGQAYSQQ-GDRARAVAQFEKALALDPHSSNRDKWES--LLKVNRYWLLIQQGDAALKANNL 367 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCccchhHHHH--HHHhhhHHHHHHHHHHHHHCCCH
Confidence 57889999999999999999999999 9999999999988743210000000000 00001122334557777778888
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHH--------
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARL-------- 156 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-------- 156 (229)
++|+..|++++..+|.+ +.++..+|.+ +...|++++|++.|+++++++|++..++..++.+
T Consensus 368 ~eA~~~~~~Al~~~P~~-----~~a~~~Lg~~------~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 368 AQAERLYQQARQVDNTD-----SYAVLGLGDV------AMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHH
Confidence 88888888888888777 7777778888 7788888888888888888877776655444433
Q ss_pred ----------------------------------HHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcc
Q psy13014 157 ----------------------------------YQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGAT 202 (229)
Q Consensus 157 ----------------------------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~ 202 (229)
+...|++++|+..|+++++++|+++.+++.++.++ .+.++..+|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~-~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDL-RQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHH
Confidence 34567778888888888888888888878888777 7777778888
Q ss_pred ccccccc-ccCCCcc
Q psy13014 203 KLSPDVF-LHPGQPQ 216 (229)
Q Consensus 203 ~~~~~~~-~~p~~~~ 216 (229)
..+.+++ .+|++..
T Consensus 516 ~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 516 ALMRRLAQQKPNDPE 530 (1157)
T ss_pred HHHHHHHHcCCCCHH
Confidence 7777777 6776543
No 17
>KOG0547|consensus
Probab=99.77 E-value=5.4e-18 Score=137.67 Aligned_cols=175 Identities=19% Similarity=0.253 Sum_probs=162.9
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
|+++..+||+++.+++.+|.+.+.+ +++++|..-|++++ ...|+++..+..++...++++++.
T Consensus 383 F~~A~~ldp~n~dvYyHRgQm~flL-~q~e~A~aDF~Kai----------------~L~pe~~~~~iQl~~a~Yr~~k~~ 445 (606)
T KOG0547|consen 383 FNKAEDLDPENPDVYYHRGQMRFLL-QQYEEAIADFQKAI----------------SLDPENAYAYIQLCCALYRQHKIA 445 (606)
T ss_pred HHHHHhcCCCCCchhHhHHHHHHHH-HHHHHHHHHHHHHh----------------hcChhhhHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999 99999999999998 688999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC------cHHHHHHHHHHHH-
Q psy13014 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS------YLKVYQRRARLYQ- 158 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~- 158 (229)
++...|+.+++..|+. +.++...|.+ +..++++++|++.|++++++.|. ++..+...|.+..
T Consensus 446 ~~m~~Fee~kkkFP~~-----~Evy~~fAei------LtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q 514 (606)
T KOG0547|consen 446 ESMKTFEEAKKKFPNC-----PEVYNLFAEI------LTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ 514 (606)
T ss_pred HHHHHHHHHHHhCCCC-----chHHHHHHHH------HhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc
Confidence 9999999999999999 9999999999 99999999999999999999999 7777777766544
Q ss_pred hcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 159 QSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 159 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
-.+++.+|+..+++++++||....++..++.+. .+.++..+|++.|+++.
T Consensus 515 wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~-lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 515 WKEDINQAENLLRKAIELDPKCEQAYETLAQFE-LQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHH-HHHhhHHHHHHHHHHHH
Confidence 468999999999999999999999999999998 88899999999998876
No 18
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.77 E-value=9.5e-18 Score=134.51 Aligned_cols=178 Identities=13% Similarity=0.007 Sum_probs=139.9
Q ss_pred chhhcc---cCCch-HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHc
Q psy13014 6 YQQELS---KNPSF-LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRL 81 (229)
Q Consensus 6 ~~~~l~---~~p~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 81 (229)
+.++|. .+|+. +..++.+|.++... |++.+|...|++++ ...|+++.+++.+|.++...
T Consensus 49 ~~~~l~~~~~~~~~~a~~~~~~g~~~~~~-g~~~~A~~~~~~Al----------------~l~P~~~~a~~~lg~~~~~~ 111 (296)
T PRK11189 49 LNQILASRDLTDEERAQLHYERGVLYDSL-GLRALARNDFSQAL----------------ALRPDMADAYNYLGIYLTQA 111 (296)
T ss_pred HHHHHccccCCcHhhHHHHHHHHHHHHHC-CCHHHHHHHHHHHH----------------HcCCCCHHHHHHHHHHHHHC
Confidence 345664 34433 67799999999999 99999999998887 57788899999999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc
Q psy13014 82 NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSD 161 (229)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 161 (229)
|++++|+..|+++++++|++ ..++.++|.+ +...|++++|+..++++++++|+++...... .+....+
T Consensus 112 g~~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~------l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~ 179 (296)
T PRK11189 112 GNFDAAYEAFDSVLELDPTY-----NYAYLNRGIA------LYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKL 179 (296)
T ss_pred CCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccC
Confidence 99999999999999999999 9999999999 9999999999999999999999987422111 1233455
Q ss_pred cHHHHHHHHHHHHH-------------------------------------hCCCcHHHHHHhccCchHHHhhhhhcccc
Q psy13014 162 KLDEALADYQKILE-------------------------------------LDPNNRDAYVATKVSPDLKLKEKNGATKL 204 (229)
Q Consensus 162 ~~~~A~~~~~~al~-------------------------------------~~p~~~~~~~~l~~~~~~~~~~~~~a~~~ 204 (229)
++++|+..+.+++. ++|...++|+++|.++ .+.++..+|+..
T Consensus 180 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~-~~~g~~~~A~~~ 258 (296)
T PRK11189 180 DPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYY-LSLGDLDEAAAL 258 (296)
T ss_pred CHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHH
Confidence 66666666654433 2333445677777777 788888889999
Q ss_pred ccccc-ccCC
Q psy13014 205 SPDVF-LHPG 213 (229)
Q Consensus 205 ~~~~~-~~p~ 213 (229)
|.+++ .+|.
T Consensus 259 ~~~Al~~~~~ 268 (296)
T PRK11189 259 FKLALANNVY 268 (296)
T ss_pred HHHHHHhCCc
Confidence 99888 7763
No 19
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.76 E-value=3.1e-17 Score=125.93 Aligned_cols=166 Identities=14% Similarity=0.173 Sum_probs=144.8
Q ss_pred CCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy13014 13 NPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYN 92 (229)
Q Consensus 13 ~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 92 (229)
+|++..++..+|.++... |++++|...+++++ ...|.....+..+|.++...|++++|+..++
T Consensus 61 ~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al----------------~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 123 (234)
T TIGR02521 61 DPDDYLAYLALALYYQQL-GELEKAEDSFRRAL----------------TLNPNNGDVLNNYGTFLCQQGKYEQAMQQFE 123 (234)
T ss_pred CcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------hhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 045667888899999999 99999999998887 4556677899999999999999999999999
Q ss_pred HHHHhC--CCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHH
Q psy13014 93 EALRSC--PRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADY 170 (229)
Q Consensus 93 ~al~~~--p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (229)
+++... +.. ...+..+|.+ +...|++++|+..+.+++..+|++..++..+|.++...|++++|+..+
T Consensus 124 ~~~~~~~~~~~-----~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 192 (234)
T TIGR02521 124 QAIEDPLYPQP-----ARSLENAGLC------ALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYL 192 (234)
T ss_pred HHHhccccccc-----hHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999864 333 7789999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccc
Q psy13014 171 QKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPD 207 (229)
Q Consensus 171 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 207 (229)
++++...|.++..+..++.+. ...++..++......
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 193 ERYQQTYNQTAESLWLGIRIA-RALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHhCCCCHHHHHHHHHHH-HHHhhHHHHHHHHHH
Confidence 999999999888888888777 677777777665443
No 20
>PRK12370 invasion protein regulator; Provisional
Probab=99.76 E-value=1.6e-17 Score=143.86 Aligned_cols=159 Identities=14% Similarity=-0.038 Sum_probs=146.7
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.++++++++|+++.++..+|.++... |++++|...|++++ ...|+++.+++.+|.++...|++
T Consensus 326 ~~~~Al~ldP~~~~a~~~lg~~~~~~-g~~~~A~~~~~~Al----------------~l~P~~~~a~~~lg~~l~~~G~~ 388 (553)
T PRK12370 326 HAIKATELDHNNPQALGLLGLINTIH-SEYIVGSLLFKQAN----------------LLSPISADIKYYYGWNLFMAGQL 388 (553)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHH----------------HhCCCCHHHHHHHHHHHHHCCCH
Confidence 36789999999999999999999999 99999999999998 67789999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHhcccH
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN-PSYLKVYQRRARLYQQSDKL 163 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~ 163 (229)
++|+..++++++++|.+ +..+..++.+ ++..|++++|+..+++++... |+++.++..+|.++..+|++
T Consensus 389 ~eAi~~~~~Al~l~P~~-----~~~~~~~~~~------~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~ 457 (553)
T PRK12370 389 EEALQTINECLKLDPTR-----AAAGITKLWI------TYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKH 457 (553)
T ss_pred HHHHHHHHHHHhcCCCC-----hhhHHHHHHH------HHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCH
Confidence 99999999999999998 7777777777 778999999999999999875 78899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 164 DEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 164 ~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
++|+..+.++....|....+...++.++
T Consensus 458 ~eA~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 458 ELARKLTKEISTQEITGLIAVNLLYAEY 485 (553)
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 9999999999999999888888887766
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.76 E-value=1.4e-17 Score=146.75 Aligned_cols=197 Identities=12% Similarity=0.035 Sum_probs=101.0
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH-------HHH----------hh-hhhhhHHH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFH-------VLF----------YL-FCSQKLEQ 66 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~----------~~-~~~~~~~~ 66 (229)
.|+++++.+|+++.++..+|.++... |++++|...+++++...+.... ... .. ......|.
T Consensus 98 ~l~~~l~~~P~~~~a~~~la~~l~~~-g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~ 176 (656)
T PRK15174 98 VVNKLLAVNVCQPEDVLLVASVLLKS-KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP 176 (656)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC
Confidence 46777888888888888888888888 8888888888777632110000 000 00 01112222
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
.+.++...+ .+...|++++|+..+++++..+|... ......++.+ +...|++++|+..+++++..+|++
T Consensus 177 ~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~----~~~~~~l~~~------l~~~g~~~eA~~~~~~al~~~p~~ 245 (656)
T PRK15174 177 RGDMIATCL-SFLNKSRLPEDHDLARALLPFFALER----QESAGLAVDT------LCAVGKYQEAIQTGESALARGLDG 245 (656)
T ss_pred CHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcc----hhHHHHHHHH------HHHCCCHHHHHHHHHHHHhcCCCC
Confidence 333333322 35555666666666666555544220 1111222333 444455555555555555555555
Q ss_pred HHHHHHHHHHHHhcccHHH----HHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCC
Q psy13014 147 LKVYQRRARLYQQSDKLDE----ALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQ 214 (229)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~ 214 (229)
+.+++.+|.++...|++++ |+..|+++++++|++..++..++.++ ...+++.+|+..+.+++ ++|++
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l-~~~g~~~eA~~~l~~al~l~P~~ 317 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADAL-IRTGQNEKAIPLLQQSLATHPDL 317 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCC
Confidence 5555555555555555543 45555555555555555555555554 44445555555555554 44443
No 22
>KOG1155|consensus
Probab=99.76 E-value=7.3e-18 Score=136.10 Aligned_cols=164 Identities=17% Similarity=0.187 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
+++....|--+... ++.+.|+.+|++++ +..|....+|..+|..+..+++...|++.|++|++
T Consensus 330 ~ETCCiIaNYYSlr-~eHEKAv~YFkRAL----------------kLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 330 PETCCIIANYYSLR-SEHEKAVMYFKRAL----------------KLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred ccceeeehhHHHHH-HhHHHHHHHHHHHH----------------hcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 33334444445555 66677777777776 78899999999999999999999999999999999
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
++|.+ ..+|+.+|.+ |--++.+.=|+-+|++|++..|+++..|..+|.||.++++.++|+.+|.+++..
T Consensus 393 i~p~D-----yRAWYGLGQa------Yeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 393 INPRD-----YRAWYGLGQA------YEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred cCchh-----HHHHhhhhHH------HHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 99999 9999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 177 DPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 177 ~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
+..+..++..+|.++ +++++..+|.+.|.+-+
T Consensus 462 ~dte~~~l~~LakLy-e~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 462 GDTEGSALVRLAKLY-EELKDLNEAAQYYEKYV 493 (559)
T ss_pred cccchHHHHHHHHHH-HHHHhHHHHHHHHHHHH
Confidence 999999999999999 99999999988887655
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.75 E-value=2.3e-17 Score=145.29 Aligned_cols=196 Identities=11% Similarity=0.044 Sum_probs=152.2
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH--------HHHHHH----------H-hhhhhhhHHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQ--------FIFHVL----------F-YLFCSQKLEQ 66 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~----------~-~~~~~~~~~~ 66 (229)
|++.+..+|+++..+...+ .+... |++++|...+++.+...+ .....+ . +.......|.
T Consensus 167 ~~~~~~~~P~~~~a~~~~~-~l~~~-g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~ 244 (656)
T PRK15174 167 ARTQAQEVPPRGDMIATCL-SFLNK-SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD 244 (656)
T ss_pred HHHHHHhCCCCHHHHHHHH-HHHHc-CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 5566778888888776654 36666 888888888876543210 000000 0 1122234566
Q ss_pred HHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 67 TAISLKDEGNALFRLNQWSE----SLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
++.++..+|..+...|++++ |+..|++++.++|++ +.++..+|.+ +...|++++|+..+++++.+
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~------l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN-----VRIVTLYADA------LIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHh
Confidence 77888889999999999885 788999999999988 8889999999 99999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCc
Q psy13014 143 NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQP 215 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~ 215 (229)
+|+++.++..+|.++...|++++|+..|++++..+|++...+..++.++ ...++..+|+..|.+++ .+|++.
T Consensus 314 ~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al-~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 314 HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAAL-LQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999999999999999999999999998887776677777 77888899999888888 888654
No 24
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.75 E-value=2.3e-17 Score=118.44 Aligned_cols=126 Identities=14% Similarity=0.085 Sum_probs=117.2
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
-|+++++.+|++ ++.+|.++... |++++|...|.+++ ...|.++.++..+|.++...|++
T Consensus 15 ~~~~al~~~p~~---~~~~g~~~~~~-g~~~~A~~~~~~al----------------~~~P~~~~a~~~lg~~~~~~g~~ 74 (144)
T PRK15359 15 ILKQLLSVDPET---VYASGYASWQE-GDYSRAVIDFSWLV----------------MAQPWSWRAHIALAGTWMMLKEY 74 (144)
T ss_pred HHHHHHHcCHHH---HHHHHHHHHHc-CCHHHHHHHHHHHH----------------HcCCCcHHHHHHHHHHHHHHhhH
Confidence 378899999997 55679999999 99999999999887 67889999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSD 161 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 161 (229)
++|+..|++++.++|.+ +.+++++|.+ +..+|++++|+..|++++.+.|+++..+.++|.+...++
T Consensus 75 ~~A~~~y~~Al~l~p~~-----~~a~~~lg~~------l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 75 TTAINFYGHALMLDASH-----PEPVYQTGVC------LKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHHHHHHhcCCCC-----cHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999 999999999999999999999999999999998876544
No 25
>KOG1125|consensus
Probab=99.74 E-value=1.1e-17 Score=138.33 Aligned_cols=165 Identities=13% Similarity=0.152 Sum_probs=143.8
Q ss_pred CccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH------------------------HHHHHHH-h
Q psy13014 3 PLPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQ------------------------FIFHVLF-Y 57 (229)
Q Consensus 3 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------------------------~~~~~~~-~ 57 (229)
+.+++++++++|++..++..+|+.|... |.-.+|...+.+.+.... .+.++.. +
T Consensus 339 i~AL~rcl~LdP~NleaLmaLAVSytNe-g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~f 417 (579)
T KOG1125|consen 339 ISALRRCLELDPTNLEALMALAVSYTNE-GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELF 417 (579)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999999 999999999988764321 1111111 2
Q ss_pred hhhhhhHH--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHH
Q psy13014 58 LFCSQKLE--QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILA 135 (229)
Q Consensus 58 ~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~ 135 (229)
+......+ .++++...+|..|...|+|++|+.+|+.|+...|++ ..+|..+|.. +-.-.+.++||..
T Consensus 418 Leaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd-----~~lWNRLGAt------LAN~~~s~EAIsA 486 (579)
T KOG1125|consen 418 LEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND-----YLLWNRLGAT------LANGNRSEEAISA 486 (579)
T ss_pred HHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch-----HHHHHHhhHH------hcCCcccHHHHHH
Confidence 23333444 788999999999999999999999999999999999 9999999999 9999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy13014 136 CSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179 (229)
Q Consensus 136 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 179 (229)
|.+|+++.|..+++.+++|.++.++|.|++|+++|-.||.+.+.
T Consensus 487 Y~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 487 YNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999998765
No 26
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.74 E-value=4.5e-17 Score=135.43 Aligned_cols=202 Identities=11% Similarity=0.079 Sum_probs=139.7
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH-------HHHH--------------HHHhh-hhhh
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQ-------FIFH--------------VLFYL-FCSQ 62 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~--------------~~~~~-~~~~ 62 (229)
-|+++++.+|++..+++.+|.++... |++++|...+++.+..-. .... ....+ ....
T Consensus 57 ~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 135 (389)
T PRK11788 57 LFIEMLKVDPETVELHLALGNLFRRR-GEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVD 135 (389)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHc-CcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 47889999999999999999999999 999999998877653210 0000 00000 1111
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
..+....++..++.++...|++++|+..+++++...|.+........+..+|.+ +...|++++|+..++++++.
T Consensus 136 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~------~~~~~~~~~A~~~~~~al~~ 209 (389)
T PRK11788 136 EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ------ALARGDLDAARALLKKALAA 209 (389)
T ss_pred CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH------HHhCCCHHHHHHHHHHHHhH
Confidence 234455667777777777777777777777777766654222223455667777 77778888888888888877
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH-HHHHHhccCchHHHhhhhhccccccccc-ccCCC
Q psy13014 143 NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR-DAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQ 214 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~ 214 (229)
+|++..+++.+|.++...|++++|+..+++++..+|.+. ..+..++.++ ...++..+|...+.++. ..|+.
T Consensus 210 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~-~~~g~~~~A~~~l~~~~~~~p~~ 282 (389)
T PRK11788 210 DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY-QALGDEAEGLEFLRRALEEYPGA 282 (389)
T ss_pred CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCc
Confidence 777777777788888888888888888888877777653 4556666666 66777777777777776 66643
No 27
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.74 E-value=2.7e-17 Score=122.23 Aligned_cols=155 Identities=13% Similarity=0.100 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy13014 19 TIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSC 98 (229)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 98 (229)
++..+|.-|+.. |++..|...+++++ ..+|....+|..++.+|...|+.+.|-+.|++|++++
T Consensus 37 arlqLal~YL~~-gd~~~A~~nlekAL----------------~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~ 99 (250)
T COG3063 37 ARLQLALGYLQQ-GDYAQAKKNLEKAL----------------EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA 99 (250)
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHH----------------HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC
Confidence 445555555555 55555555555555 4555555555555555555555555555555555555
Q ss_pred CCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 99 PRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL--NPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 99 p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
|++ .++++|.|.- +..+|++++|...|++|+.. .|..+.++-|+|.|..+.|+++.|...|++++++
T Consensus 100 p~~-----GdVLNNYG~F------LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 100 PNN-----GDVLNNYGAF------LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred CCc-----cchhhhhhHH------HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 555 5555555555 55555555555555555543 2334455555555555555555555555555555
Q ss_pred CCCcHHHHHHhccCchHHHhhhhhcc
Q psy13014 177 DPNNRDAYVATKVSPDLKLKEKNGAT 202 (229)
Q Consensus 177 ~p~~~~~~~~l~~~~~~~~~~~~~a~ 202 (229)
+|+++.....++... .+.+++..|.
T Consensus 169 dp~~~~~~l~~a~~~-~~~~~y~~Ar 193 (250)
T COG3063 169 DPQFPPALLELARLH-YKAGDYAPAR 193 (250)
T ss_pred CcCCChHHHHHHHHH-HhcccchHHH
Confidence 555555555555554 3344444443
No 28
>PLN02789 farnesyltranstransferase
Probab=99.74 E-value=6.2e-17 Score=130.20 Aligned_cols=175 Identities=12% Similarity=0.081 Sum_probs=140.2
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFS-EIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
+.++++++|++..++..++.++..+ | +++++...+++.+ ...|++..+|...+.+....+..
T Consensus 60 t~~aI~lnP~~ytaW~~R~~iL~~L-~~~l~eeL~~~~~~i----------------~~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 60 TADVIRLNPGNYTVWHFRRLCLEAL-DADLEEELDFAEDVA----------------EDNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHHHHCchhHHHHHHHHHHHHHc-chhHHHHHHHHHHHH----------------HHCCcchHHhHHHHHHHHHcCch
Confidence 5678888999999999999888888 7 5788888887777 57788888888888888888764
Q ss_pred --HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc--
Q psy13014 85 --SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQS-- 160 (229)
Q Consensus 85 --~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-- 160 (229)
.+++.++++++..+|.+ ..+|.++|.+ +..+|++++|+++++++|+.+|.+..+|+.++.+...+
T Consensus 123 ~~~~el~~~~kal~~dpkN-----y~AW~~R~w~------l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~ 191 (320)
T PLN02789 123 AANKELEFTRKILSLDAKN-----YHAWSHRQWV------LRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPL 191 (320)
T ss_pred hhHHHHHHHHHHHHhCccc-----HHHHHHHHHH------HHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccc
Confidence 67888888999999988 8899999999 88888899999999999999999999999999888776
Q ss_pred -ccH----HHHHHHHHHHHHhCCCcHHHHHHhccCchHH----Hhhhhhccccccccc
Q psy13014 161 -DKL----DEALADYQKILELDPNNRDAYVATKVSPDLK----LKEKNGATKLSPDVF 209 (229)
Q Consensus 161 -~~~----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----~~~~~~a~~~~~~~~ 209 (229)
|.+ ++++.+..+++.++|++..+|..++.++ .. +....++...+..++
T Consensus 192 l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll-~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 192 LGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLF-KDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred cccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHH-hcCCcccccchhHHHHHHHhh
Confidence 323 4678888899999999999998888887 33 122334545555444
No 29
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.73 E-value=1.1e-16 Score=144.88 Aligned_cols=198 Identities=20% Similarity=0.182 Sum_probs=168.0
Q ss_pred ccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH-----------------HHHHHhhhh--hhhH
Q psy13014 4 LPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFI-----------------FHVLFYLFC--SQKL 64 (229)
Q Consensus 4 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~~~--~~~~ 64 (229)
..|+++++.+|+++.+++.+|.++... |++++|...+++.+...+.. ...+..+.. ....
T Consensus 43 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~ 121 (899)
T TIGR02917 43 IQLKNALQKDPNDAEARFLLGKIYLAL-GDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDD 121 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCc
Confidence 457889999999999999999999999 99999999998876431100 011111111 1245
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP 144 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 144 (229)
+..+..+..+|.++...|++++|+..|++++..+|.+ ..++..+|.+ +...|++++|+..++++++.+|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~------~~~~~~~~~A~~~~~~~~~~~~ 190 (899)
T TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRS-----LYAKLGLAQL------ALAENRFDEARALIDEVLTADP 190 (899)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hhhHHHHHHH------HHHCCCHHHHHHHHHHHHHhCC
Confidence 6777889999999999999999999999999999988 8899999999 9999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCC
Q psy13014 145 SYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQ 214 (229)
Q Consensus 145 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~ 214 (229)
.+..++..+|.++...|++++|+..|++++..+|+++..+..++.++ ...+++.+|...+..+. ..|++
T Consensus 191 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~-~~~g~~~~A~~~~~~~~~~~~~~ 260 (899)
T TIGR02917 191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATIL-IEAGEFEEAEKHADALLKKAPNS 260 (899)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999888 77788888888888777 66654
No 30
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.73 E-value=1.1e-16 Score=144.87 Aligned_cols=179 Identities=16% Similarity=0.166 Sum_probs=96.1
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
|+++++.+|++..+++.++.++... |++++|...+++.+ ...|.+..++..++.++...|+++
T Consensus 488 ~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~ 550 (899)
T TIGR02917 488 FEKALSIEPDFFPAAANLARIDIQE-GNPDDAIQRFEKVL----------------TIDPKNLRAILALAGLYLRTGNEE 550 (899)
T ss_pred HHHHHhhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHH----------------HhCcCcHHHHHHHHHHHHHcCCHH
Confidence 3344444555555555555444444 55555544444443 223344445555555555555555
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHH
Q psy13014 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDE 165 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 165 (229)
+|+..+++++..+|.+ ...+..++.+ +...|++++|+..+++++...|.++.++..+|.++...|++++
T Consensus 551 ~A~~~~~~~~~~~~~~-----~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 551 EAVAWLEKAAELNPQE-----IEPALALAQY------YLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHHHHHHHHhCccc-----hhHHHHHHHH------HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555554 4555555555 5555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCC
Q psy13014 166 ALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPG 213 (229)
Q Consensus 166 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~ 213 (229)
|+..|+++++.+|.++..+..++.++ ...++..+|+..+.+++ .+|+
T Consensus 620 A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~ 667 (899)
T TIGR02917 620 AVSSFKKLLALQPDSALALLLLADAY-AVMKNYAKAITSLKRALELKPD 667 (899)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCC
Confidence 55555555555555555555555555 45555555555555555 4444
No 31
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.73 E-value=1e-16 Score=149.44 Aligned_cols=199 Identities=13% Similarity=0.065 Sum_probs=155.8
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH----------------hhhhh-hh----
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLF----------------YLFCS-QK---- 63 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------~~~~~-~~---- 63 (229)
.|+++++.+|++..+++.+|.++... |++++|...|++++...+....... ++... ..
T Consensus 373 ~~~~Al~~~P~~~~a~~~Lg~~~~~~-g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 373 LYQQARQVDNTDSYAVLGLGDVAMAR-KDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHH
Confidence 47889999999999999999999999 9999999999988743221111000 00000 00
Q ss_pred -----HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHH
Q psy13014 64 -----LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSK 138 (229)
Q Consensus 64 -----~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~ 138 (229)
..-....+..+|..+...|++++|+..|+++++++|++ +.+++.+|.+ +...|++++|+..+++
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~-----~~~~~~LA~~------~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS-----VWLTYRLAQD------LRQAGQRSQADALMRR 520 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHH
Confidence 00113456678999999999999999999999999999 9999999999 9999999999999999
Q ss_pred HHhcCCCcHHHH--------------------------------------------------------------------
Q psy13014 139 AITLNPSYLKVY-------------------------------------------------------------------- 150 (229)
Q Consensus 139 al~~~p~~~~~~-------------------------------------------------------------------- 150 (229)
++..+|+++.++
T Consensus 521 al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p 600 (1157)
T PRK11447 521 LAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP 600 (1157)
T ss_pred HHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 988888776533
Q ss_pred ------HHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 151 ------QRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 151 ------~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
+.+|.++...|++++|+..|+++++.+|+++.++..++.++ ...++..+|++.+.+++ ..|+++.
T Consensus 601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~-~~~g~~~eA~~~l~~ll~~~p~~~~ 672 (1157)
T PRK11447 601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVD-IAQGDLAAARAQLAKLPATANDSLN 672 (1157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHhccCCCChH
Confidence 34566677778888888888888888888888888888888 77788888888888777 6665543
No 32
>KOG0547|consensus
Probab=99.72 E-value=3.5e-17 Score=133.02 Aligned_cols=168 Identities=16% Similarity=0.173 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
..++...|..++.. |+...+-..|++.+ ..++.....+..+|..|.+..+..+....|++|.+
T Consensus 326 A~al~~~gtF~fL~-g~~~~a~~d~~~~I----------------~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ 388 (606)
T KOG0547|consen 326 AEALLLRGTFHFLK-GDSLGAQEDFDAAI----------------KLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAED 388 (606)
T ss_pred HHHHHHhhhhhhhc-CCchhhhhhHHHHH----------------hcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHh
Confidence 45666677767666 77777777777666 34455555566677777777777777777777777
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
++|.+ +++|+.+|.+ ++-++++++|+..|++++.++|.+.-++..++.+.+++++++++...|+.++..
T Consensus 389 ldp~n-----~dvYyHRgQm------~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk 457 (606)
T KOG0547|consen 389 LDPEN-----PDVYYHRGQM------RFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK 457 (606)
T ss_pred cCCCC-----CchhHhHHHH------HHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77776 7777777777 777777777777777777777777777777777777777777777777777777
Q ss_pred CCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCC
Q psy13014 177 DPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPG 213 (229)
Q Consensus 177 ~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~ 213 (229)
-|+.++.+...+.++ ...+++.+|++.|..++ +.|.
T Consensus 458 FP~~~Evy~~fAeiL-tDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 458 FPNCPEVYNLFAEIL-TDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred CCCCchHHHHHHHHH-hhHHhHHHHHHHHHHHHhhccc
Confidence 777777777777776 66666777777777766 6664
No 33
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.72 E-value=1.7e-16 Score=117.97 Aligned_cols=139 Identities=17% Similarity=0.196 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP 144 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 144 (229)
..-..+...+|..|++.|++..|..-++++++.+|++ ..+|..++.+ |..+|+.+.|-+.|++|++++|
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~-----~~a~~~~A~~------Yq~~Ge~~~A~e~YrkAlsl~p 100 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY-----YLAHLVRAHY------YQKLGENDLADESYRKALSLAP 100 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----HHHHHHHHHH------HHHcCChhhHHHHHHHHHhcCC
Confidence 4556688899999999999999999999999999999 9999999999 9999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCc
Q psy13014 145 SYLKVYQRRARLYQQSDKLDEALADYQKILEL--DPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQP 215 (229)
Q Consensus 145 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~ 215 (229)
++.+++.|.|.-++..|++++|...|++|+.. .|.....+-|+|.|. .++++...|.+.+.+++ ++|+++
T Consensus 101 ~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca-l~~gq~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 101 NNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA-LKAGQFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred CccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH-hhcCCchhHHHHHHHHHHhCcCCC
Confidence 99999999999999999999999999999875 566778999999998 89999999999999999 998653
No 34
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.71 E-value=2.9e-16 Score=130.64 Aligned_cols=136 Identities=17% Similarity=0.099 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc-
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY- 146 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~- 146 (229)
...+..+|..+...|++++|+..|+++++.+|.. ..++..+|.+ +...|++++|+..+++++..+|.+
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~------~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAADPQC-----VRASILLGDL------ALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHChhhH
Confidence 3456778888889999999999999999988887 8888889999 989999999999999999888876
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 147 LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
..++..++.++...|++++|+..++++++.+|+.... ..++.++ .+.++..+|...+.+++ ..|++..
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~-~~~g~~~~A~~~l~~~l~~~P~~~~ 317 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLL-EEQEGPEAAQALLREQLRRHPSLRG 317 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHH-HHhCCHHHHHHHHHHHHHhCcCHHH
Confidence 4567788889999999999999999999998877544 7777777 77788888888888888 7776543
No 35
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.70 E-value=5.6e-16 Score=124.29 Aligned_cols=134 Identities=16% Similarity=0.104 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
..+..+..++.+|.++...|++++|+..|+++++++|++ +.+|.++|.+ +...|++++|+..|++++++
T Consensus 59 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~------~~~~g~~~~A~~~~~~Al~l 127 (296)
T PRK11189 59 TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM-----ADAYNYLGIY------LTQAGNFDAAYEAFDSVLEL 127 (296)
T ss_pred CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHh
Confidence 345668899999999999999999999999999999999 9999999999 99999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 143 NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
+|++..++.++|.++...|++++|++.|+++++++|+++.....+ .+. ...++..+|+..+.+..
T Consensus 128 ~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~-~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 128 DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLA-ESKLDPKQAKENLKQRY 192 (296)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHH-HccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998422111 112 33445667777775544
No 36
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.69 E-value=1e-15 Score=115.44 Aligned_cols=118 Identities=17% Similarity=0.138 Sum_probs=104.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHh-hccCC--hHHHHHH
Q psy13014 59 FCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASY-LSLEK--PDQSILA 135 (229)
Q Consensus 59 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~-~~~~~--~~~A~~~ 135 (229)
......|+++..|..+|.++...|++++|+..|+++++++|++ +.++..+|.+ + ...|+ +++|++.
T Consensus 64 ~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~-----~~~~~~lA~a------L~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 64 DKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN-----AELYAALATV------LYYQAGQHMTPQTREM 132 (198)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHhcCCCCcHHHHHH
Confidence 3446778899999999999999999999999999999999999 9999999987 6 56677 5999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHh
Q psy13014 136 CSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVAT 187 (229)
Q Consensus 136 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 187 (229)
++++++.+|+++.+++++|.++...|++++|+.+|+++++++|.+..-...+
T Consensus 133 l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 133 IDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 9999999999999999999999999999999999999999998877655444
No 37
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.69 E-value=9.6e-16 Score=119.06 Aligned_cols=176 Identities=15% Similarity=0.085 Sum_probs=146.9
Q ss_pred ccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHH
Q psy13014 11 SKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAK 90 (229)
Q Consensus 11 ~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 90 (229)
..++..+..++.+|..+... |+++.|...+++.+... ...+....+++.+|.++...|++++|+..
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~~~~~~-------------p~~~~~~~a~~~la~~~~~~~~~~~A~~~ 92 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDS-GDYTEAIKYFEALESRY-------------PFSPYAEQAQLDLAYAYYKSGDYAEAIAA 92 (235)
T ss_pred CcccCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-------------CCchhHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 45667788999999999999 99999999998877221 12344557889999999999999999999
Q ss_pred HHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhcc--------CChHHHHHHHHHHHhcCCCcHHHH------------
Q psy13014 91 YNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSL--------EKPDQSILACSKAITLNPSYLKVY------------ 150 (229)
Q Consensus 91 ~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~------------ 150 (229)
|+++++.+|++.. ...+++.+|.+ +... |++++|+..+++++..+|++..++
T Consensus 93 ~~~~l~~~p~~~~--~~~a~~~~g~~------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~ 164 (235)
T TIGR03302 93 ADRFIRLHPNHPD--ADYAYYLRGLS------NYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR 164 (235)
T ss_pred HHHHHHHCcCCCc--hHHHHHHHHHH------HHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH
Confidence 9999999998721 13378889999 7765 889999999999999999986542
Q ss_pred -----HHHHHHHHhcccHHHHHHHHHHHHHhCCCc---HHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 151 -----QRRARLYQQSDKLDEALADYQKILELDPNN---RDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 151 -----~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
..+|.++...|++.+|+..+++++...|+. +.++..++.++ ..+++..+|...+....
T Consensus 165 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~-~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 165 LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAY-LKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHH-HHcCCHHHHHHHHHHHH
Confidence 367888999999999999999999997764 57999999999 88999999888665544
No 38
>PLN02789 farnesyltranstransferase
Probab=99.68 E-value=9.1e-16 Score=123.46 Aligned_cols=180 Identities=12% Similarity=0.107 Sum_probs=150.0
Q ss_pred cccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc-CHHHHH
Q psy13014 10 LSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN-QWSESL 88 (229)
Q Consensus 10 l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~ 88 (229)
+...|++..++-.+-.++... +..++|...+.+++ ...|.+..+|...|.++...+ .+++++
T Consensus 30 i~y~~~~~~a~~~~ra~l~~~-e~serAL~lt~~aI----------------~lnP~~ytaW~~R~~iL~~L~~~l~eeL 92 (320)
T PLN02789 30 IAYTPEFREAMDYFRAVYASD-ERSPRALDLTADVI----------------RLNPGNYTVWHFRRLCLEALDADLEEEL 92 (320)
T ss_pred eeeCHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH----------------HHCchhHHHHHHHHHHHHHcchhHHHHH
Confidence 445566666664443445556 77777877777776 678999999999999999998 689999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCCh--HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHH
Q psy13014 89 AKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKP--DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEA 166 (229)
Q Consensus 89 ~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 166 (229)
..+++++..+|++ ..+|.+++.+ +..+|+. ++++.+++++++.+|++..+|..++.++...|+++++
T Consensus 93 ~~~~~~i~~npkn-----yqaW~~R~~~------l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~ee 161 (320)
T PLN02789 93 DFAEDVAEDNPKN-----YQIWHHRRWL------AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDE 161 (320)
T ss_pred HHHHHHHHHCCcc-----hHHhHHHHHH------HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHH
Confidence 9999999999999 9999999999 7777764 7889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHhccCchHHH---hh----hhhccccccccc-ccCCCcccc
Q psy13014 167 LADYQKILELDPNNRDAYVATKVSPDLKL---KE----KNGATKLSPDVF-LHPGQPQIQ 218 (229)
Q Consensus 167 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~---~~----~~~a~~~~~~~~-~~p~~~~~~ 218 (229)
++.+.++++.+|.+..+|..++.+. .++ +. ..+++....+++ ++|+|...+
T Consensus 162 L~~~~~~I~~d~~N~sAW~~R~~vl-~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW 220 (320)
T PLN02789 162 LEYCHQLLEEDVRNNSAWNQRYFVI-TRSPLLGGLEAMRDSELKYTIDAILANPRNESPW 220 (320)
T ss_pred HHHHHHHHHHCCCchhHHHHHHHHH-HhccccccccccHHHHHHHHHHHHHhCCCCcCHH
Confidence 9999999999999999999999887 443 22 234566666777 899776654
No 39
>KOG1173|consensus
Probab=99.67 E-value=6.3e-16 Score=127.64 Aligned_cols=193 Identities=15% Similarity=0.157 Sum_probs=105.8
Q ss_pred hcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH-------HHHHHH-----------hhhhhhhHHHHHHH
Q psy13014 9 ELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQF-------IFHVLF-----------YLFCSQKLEQTAIS 70 (229)
Q Consensus 9 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~-----------~~~~~~~~~~~~~~ 70 (229)
.+...|+.+..|+..|..|... |++.+|..+|.|+...-+. +.+... +....+.-+....-
T Consensus 304 LV~~yP~~a~sW~aVg~YYl~i-~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP 382 (611)
T KOG1173|consen 304 LVDLYPSKALSWFAVGCYYLMI-GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP 382 (611)
T ss_pred HHHhCCCCCcchhhHHHHHHHh-cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch
Confidence 4455666666666666666555 6666666666555422111 111110 01111111222222
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC-------
Q psy13014 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN------- 143 (229)
Q Consensus 71 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~------- 143 (229)
..-+|..|..++++.-|..+|.+|+.+.|.+ +.+...+|.+ .+..+.|.+|+.+|.+++..-
T Consensus 383 ~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D-----plv~~Elgvv------ay~~~~y~~A~~~f~~~l~~ik~~~~e~ 451 (611)
T KOG1173|consen 383 SLYLGMEYMRTNNLKLAEKFFKQALAIAPSD-----PLVLHELGVV------AYTYEEYPEALKYFQKALEVIKSVLNEK 451 (611)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCc-----chhhhhhhhe------eehHhhhHHHHHHHHHHHHHhhhccccc
Confidence 3345555556666666666666666666665 6666666666 666666666666666665221
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCC
Q psy13014 144 PSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQ 214 (229)
Q Consensus 144 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~ 214 (229)
+.....+.++|.++.+++++++|+..|++++.+.|.+...+..+|.++ ..++++..|+..|.+++ ++|+|
T Consensus 452 ~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy-~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 452 IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIY-HLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHH-HHhcChHHHHHHHHHHHhcCCcc
Confidence 112334566666666666666666666666666666666666666666 55666666666666666 66654
No 40
>KOG0548|consensus
Probab=99.67 E-value=1.7e-15 Score=124.44 Aligned_cols=157 Identities=24% Similarity=0.351 Sum_probs=132.6
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHH---------HHHHHH-hhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy13014 23 SCFILFILFSEIRTDCHQFERQVFYIQF---------IFHVLF-YLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYN 92 (229)
Q Consensus 23 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 92 (229)
+|-.+... ++++.++.+|.+.+.-.+. ..+.+. .....-..|..+......|+.+++.|+|..|+.+|.
T Consensus 304 ~g~a~~k~-~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 304 LGNAYTKR-EDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred hhhhhhhH-HhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 55567777 8888888888876643322 111111 001112345556777788999999999999999999
Q ss_pred HHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHH
Q psy13014 93 EALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQK 172 (229)
Q Consensus 93 ~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (229)
++|..+|++ +.+|.|+|.| |.+++.+..|+.+++++++++|+...+|.+.|.++..+.+|++|.+.|++
T Consensus 383 eAIkr~P~D-----a~lYsNRAac------~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 383 EAIKRDPED-----ARLYSNRAAC------YLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHhcCCch-----hHHHHHHHHH------HHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHhccCc
Q psy13014 173 ILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 173 al~~~p~~~~~~~~l~~~~ 191 (229)
+++.+|++.++...+.+|.
T Consensus 452 ale~dp~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGYRRCV 470 (539)
T ss_pred HHhcCchhHHHHHHHHHHH
Confidence 9999999999999998887
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=7.9e-16 Score=122.64 Aligned_cols=191 Identities=15% Similarity=0.065 Sum_probs=106.8
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH---H-------------HHHHhh---hhhhhHH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFI---F-------------HVLFYL---FCSQKLE 65 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~-------------~~~~~~---~~~~~~~ 65 (229)
.|++.++.++.++..+..++.+ ... +++++|...+++........ . .....+ ......+
T Consensus 66 ay~~l~~~~~~~~~~~~~l~~l-~~~-~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (280)
T PF13429_consen 66 AYEKLLASDKANPQDYERLIQL-LQD-GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAP 143 (280)
T ss_dssp ------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---
T ss_pred cccccccccccccccccccccc-ccc-ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC
Confidence 4666666666666665555544 455 66666666554432111000 0 000000 1112235
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
.++..+...|.++.+.|++++|+..|+++++.+|++ ..+...++.+ +...|+++++.+.+.......|.
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~-----~~~~~~l~~~------li~~~~~~~~~~~l~~~~~~~~~ 212 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD-----PDARNALAWL------LIDMGDYDEAREALKRLLKAAPD 212 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT------HHHHHHHHHH------HCTTCHHHHHHHHHHHHHHH-HT
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHH------HHHCCChHHHHHHHHHHHHHCcC
Confidence 678899999999999999999999999999999999 9999999999 99999999999999988888899
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 146 YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
++..+..+|.++..+|++++|+.+|++++..+|+|+.....++.++ ...|+..+|.+.+.+++
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l-~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADAL-EQAGRKDEALRLRRQAL 275 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHH-T----------------
T ss_pred HHHHHHHHHHHhcccccccccccccccccccccccccccccccccc-ccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999 89999999998888775
No 42
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.66 E-value=5e-15 Score=105.11 Aligned_cols=113 Identities=15% Similarity=0.155 Sum_probs=107.7
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
...|.+....+.+|..++..|++++|+..+++++..+|.+ +.++..+|.+ +...|++++|+..+++++.
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~la~~------~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN-----SRYWLGLAAC------CQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-----HHHHHHHHHH------HHHHHHHHHHHHHHHHHHh
Confidence 5678888899999999999999999999999999999999 9999999999 9999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHH
Q psy13014 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 185 (229)
.+|+++..++.+|.++...|++++|+..|+++++++|++.....
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 99999999999999999999999999999999999999887553
No 43
>KOG1173|consensus
Probab=99.65 E-value=6.8e-16 Score=127.45 Aligned_cols=188 Identities=16% Similarity=0.128 Sum_probs=121.6
Q ss_pred hhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHH
Q psy13014 7 QQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSE 86 (229)
Q Consensus 7 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 86 (229)
...++.+|-++..+...--++... |+..+-...-.+.+ ...|+.+..|+..|..|...|++.+
T Consensus 268 ~~lle~dpfh~~~~~~~ia~l~el-~~~n~Lf~lsh~LV----------------~~yP~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 268 EELLEKDPFHLPCLPLHIACLYEL-GKSNKLFLLSHKLV----------------DLYPSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHHhhCCCCcchHHHHHHHHHHh-cccchHHHHHHHHH----------------HhCCCCCcchhhHHHHHHHhcCcHH
Confidence 456788898887766554477777 66554433333333 2444555555555555555555555
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHhHhhhhh------------hh---------------H-HhhccCChHHHHHHHHH
Q psy13014 87 SLAKYNEALRSCPRSCSVSRAVFYANRSAALE------------KL---------------A-SYLSLEKPDQSILACSK 138 (229)
Q Consensus 87 A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~------------~~---------------~-~~~~~~~~~~A~~~~~~ 138 (229)
|..+|.++..++|.. ..+|...|..+. .. | +|...++++-|..+|..
T Consensus 331 ARry~SKat~lD~~f-----gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 331 ARRYFSKATTLDPTF-----GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred HHHHHHHHhhcCccc-----cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 555555555555554 444444444400 00 0 06777788888888888
Q ss_pred HHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh----CC---CcHHHHHHhccCchHHHhhhhhccccccccc-c
Q psy13014 139 AITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL----DP---NNRDAYVATKVSPDLKLKEKNGATKLSPDVF-L 210 (229)
Q Consensus 139 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p---~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~ 210 (229)
|+.+.|.++-.+..+|.+.+..+.|.+|+.+|++++.. .+ .....+.++|.++ .+.+.+.+|+..+++++ +
T Consensus 406 A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~-Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 406 ALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY-RKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred HHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH-HHHhhHHHHHHHHHHHHHc
Confidence 88888888888888888888888888888888888732 22 2445678888888 78888888888888888 8
Q ss_pred cCCCccc
Q psy13014 211 HPGQPQI 217 (229)
Q Consensus 211 ~p~~~~~ 217 (229)
.|.++..
T Consensus 485 ~~k~~~~ 491 (611)
T KOG1173|consen 485 SPKDAST 491 (611)
T ss_pred CCCchhH
Confidence 8866553
No 44
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.64 E-value=6.4e-15 Score=120.86 Aligned_cols=115 Identities=25% Similarity=0.361 Sum_probs=109.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHH
Q psy13014 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVY 150 (229)
Q Consensus 71 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (229)
+...|..++..|+|++|+.+|.+++.++|.+ +.++.++|.+ +..+|++++|+..+++++.++|+++.++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-----~~a~~~~a~~------~~~~g~~~eAl~~~~~Al~l~P~~~~a~ 73 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-----AELYADRAQA------NIKLGNFTEAVADANKAIELDPSLAKAY 73 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCcCCHHHH
Confidence 5678999999999999999999999999999 9999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhh
Q psy13014 151 QRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKE 197 (229)
Q Consensus 151 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 197 (229)
+++|.++..+|++++|+..|+++++++|+++.+...++.|. .++..
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~-~kl~~ 119 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECD-EKIAE 119 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHHh
Confidence 99999999999999999999999999999999999998886 55533
No 45
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.63 E-value=1e-14 Score=103.69 Aligned_cols=107 Identities=10% Similarity=0.050 Sum_probs=101.7
Q ss_pred hH-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 63 KL-EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 63 ~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
.. ++.-...+.+|..+++.|++++|...|+-++..+|.+ ...|+++|.| +..+|+|++||..|.+++.
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-----~~y~~gLG~~------~Q~~g~~~~AI~aY~~A~~ 97 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS-----FDYWFRLGEC------CQAQKHWGEAIYAYGRAAQ 97 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----HHHHHHHHHH------HHHHhhHHHHHHHHHHHHh
Confidence 44 6778889999999999999999999999999999999 9999999999 9999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCc
Q psy13014 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 180 (229)
++|+++.++++.|.|+...|+.+.|.+.|+.++..-.+.
T Consensus 98 L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 98 IKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999887443
No 46
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.62 E-value=3.6e-15 Score=112.55 Aligned_cols=122 Identities=20% Similarity=0.229 Sum_probs=115.1
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH-Hh
Q psy13014 81 LNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLY-QQ 159 (229)
Q Consensus 81 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~ 159 (229)
.++.++++..++++++.+|++ ...|..+|.+ +...|++++|+..|++++.++|+++.++..+|.++ ..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~-----~~~w~~Lg~~------~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~ 120 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN-----SEQWALLGEY------YLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQ 120 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 677899999999999999999 9999999999 99999999999999999999999999999999985 67
Q ss_pred ccc--HHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCC
Q psy13014 160 SDK--LDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQ 214 (229)
Q Consensus 160 ~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~ 214 (229)
.|+ +++|...++++++.+|++..++.++|.++ .+.+++.+|+..|.+++ +.|.+
T Consensus 121 ~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~-~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 121 AGQHMTPQTREMIDKALALDANEVTALMLLASDA-FMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred cCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCC
Confidence 787 59999999999999999999999999999 89999999999999999 77743
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=6.1e-16 Score=123.28 Aligned_cols=193 Identities=18% Similarity=0.179 Sum_probs=113.1
Q ss_pred CCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH----h------------hhhhhhHHHHHHHHHHHHH
Q psy13014 13 NPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLF----Y------------LFCSQKLEQTAISLKDEGN 76 (229)
Q Consensus 13 ~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~------------~~~~~~~~~~~~~~~~~g~ 76 (229)
.|+++..+..+|.+.... ++++.|...+++.+..-+....... . ....-....++..+.....
T Consensus 40 ~~~~~~~~~~~a~La~~~-~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~ 118 (280)
T PF13429_consen 40 PPDDPEYWRLLADLAWSL-GDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEALKLAEKAYERDGDPRYLLSALQ 118 (280)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred cccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHH
Confidence 488999999999999888 9999999999877644322111111 0 0000012345566777888
Q ss_pred HHHHccCHHHHHHHHHHHHHhC--CCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q psy13014 77 ALFRLNQWSESLAKYNEALRSC--PRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRA 154 (229)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 154 (229)
++...++++++...++++.... +.+ +.+|..+|.+ +.+.|+.++|+.+++++++.+|+++.+...++
T Consensus 119 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~a~~------~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~ 187 (280)
T PF13429_consen 119 LYYRLGDYDEAEELLEKLEELPAAPDS-----ARFWLALAEI------YEQLGDPDKALRDYRKALELDPDDPDARNALA 187 (280)
T ss_dssp -HHHTT-HHHHHHHHHHHHH-T---T------HHHHHHHHHH------HHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHhccCCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 8999999999999999988655 455 8899999999 99999999999999999999999999999999
Q ss_pred HHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcccc
Q psy13014 155 RLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQIQ 218 (229)
Q Consensus 155 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~ 218 (229)
.++...|+++++...+.......|+++..+..++.++ ..+++..+|+..+.+++ .+|+|+.+.
T Consensus 188 ~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~-~~lg~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 188 WLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAY-LQLGRYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHH-HHHT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred HHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHh-ccccccccccccccccccccccccccc
Confidence 9999999999999999999998899999999999999 89999999999999999 899877543
No 48
>KOG0550|consensus
Probab=99.62 E-value=6.5e-15 Score=117.77 Aligned_cols=159 Identities=21% Similarity=0.354 Sum_probs=137.0
Q ss_pred hcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHH
Q psy13014 9 ELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESL 88 (229)
Q Consensus 9 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 88 (229)
.+++++++.++++..|.++... ++.+.+...|.+.+..-+--...- ..-..+.....+...|+-.++.|++.+|.
T Consensus 195 ilkld~~n~~al~vrg~~~yy~-~~~~ka~~hf~qal~ldpdh~~sk----~~~~~~k~le~~k~~gN~~fk~G~y~~A~ 269 (486)
T KOG0550|consen 195 ILKLDATNAEALYVRGLCLYYN-DNADKAINHFQQALRLDPDHQKSK----SASMMPKKLEVKKERGNDAFKNGNYRKAY 269 (486)
T ss_pred HHhcccchhHHHHhcccccccc-cchHHHHHHHhhhhccChhhhhHH----hHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence 6789999999999999999999 999999999988874322111100 01133566678889999999999999999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHH
Q psy13014 89 AKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALA 168 (229)
Q Consensus 89 ~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 168 (229)
++|..+|.++|++ ....+.+|.++|.+ ...+|+..+|+..++.+++++|...+++...|.|+..++++++|++
T Consensus 270 E~Yteal~idP~n-~~~naklY~nra~v------~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 270 ECYTEALNIDPSN-KKTNAKLYGNRALV------NIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred HHHHHhhcCCccc-cchhHHHHHHhHhh------hcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 33457889999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q psy13014 169 DYQKILELDPN 179 (229)
Q Consensus 169 ~~~~al~~~p~ 179 (229)
+|+++++...+
T Consensus 343 d~~~a~q~~~s 353 (486)
T KOG0550|consen 343 DYEKAMQLEKD 353 (486)
T ss_pred HHHHHHhhccc
Confidence 99999998776
No 49
>KOG0543|consensus
Probab=99.62 E-value=8.7e-15 Score=117.27 Aligned_cols=139 Identities=26% Similarity=0.383 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc----------hhhHHHHHhHhhhhhhhHHhhccCChHHHH
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCS----------VSRAVFYANRSAALEKLASYLSLEKPDQSI 133 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~----------~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~ 133 (229)
.-..+......|+.+++.|+|..|...|++++..-+.... ..+..++.|++.| +.++++|..|+
T Consensus 204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c------~lKl~~~~~Ai 277 (397)
T KOG0543|consen 204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAAC------YLKLKEYKEAI 277 (397)
T ss_pred HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHH------HHhhhhHHHHH
Confidence 3455667788999999999999999999999887442211 2356789999999 99999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhh-hhhccccccccc
Q psy13014 134 LACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKE-KNGATKLSPDVF 209 (229)
Q Consensus 134 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-~~~a~~~~~~~~ 209 (229)
..++++|.++|+|++++|+.|.++..+|+|+.|+..|+++++++|+|..+...+..|. ++.++ ..+..+.|.+++
T Consensus 278 ~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~-~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 278 ESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK-QKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999888 66666 444577788877
No 50
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.61 E-value=2.2e-14 Score=108.79 Aligned_cols=170 Identities=13% Similarity=0.086 Sum_probs=150.7
Q ss_pred hhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHH
Q psy13014 8 QELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSES 87 (229)
Q Consensus 8 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 87 (229)
+...++|++..+ ..++..+... |+-+.+..+..+.. ...+.+...+..+|...+..|+|..|
T Consensus 58 ~~~~~~p~d~~i-~~~a~a~~~~-G~a~~~l~~~~~~~----------------~~~~~d~~ll~~~gk~~~~~g~~~~A 119 (257)
T COG5010 58 AAVLRNPEDLSI-AKLATALYLR-GDADSSLAVLQKSA----------------IAYPKDRELLAAQGKNQIRNGNFGEA 119 (257)
T ss_pred HHHhcCcchHHH-HHHHHHHHhc-ccccchHHHHhhhh----------------ccCcccHHHHHHHHHHHHHhcchHHH
Confidence 456788888888 7777777777 88777777666654 46677777787899999999999999
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHH
Q psy13014 88 LAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEAL 167 (229)
Q Consensus 88 ~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 167 (229)
+..+.++..+.|++ +.+|..+|.+ |.+.|+++.|...|.+++++.|+++.+..|+|..+.-.|+++.|.
T Consensus 120 ~~~~rkA~~l~p~d-----~~~~~~lgaa------ldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~ 188 (257)
T COG5010 120 VSVLRKAARLAPTD-----WEAWNLLGAA------LDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAE 188 (257)
T ss_pred HHHHHHHhccCCCC-----hhhhhHHHHH------HHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHH
Confidence 99999999999999 9999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccc
Q psy13014 168 ADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPD 207 (229)
Q Consensus 168 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 207 (229)
..+..+....+.+..+..+++.+. ...+++.+|...-..
T Consensus 189 ~lll~a~l~~~ad~~v~~NLAl~~-~~~g~~~~A~~i~~~ 227 (257)
T COG5010 189 TLLLPAYLSPAADSRVRQNLALVV-GLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHH-hhcCChHHHHhhccc
Confidence 999999999999999999999988 777887776654443
No 51
>KOG0548|consensus
Probab=99.61 E-value=2.6e-14 Score=117.57 Aligned_cols=195 Identities=19% Similarity=0.213 Sum_probs=157.2
Q ss_pred ccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccC
Q psy13014 4 LPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQ 83 (229)
Q Consensus 4 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 83 (229)
..|.++++++ ++...+...+-+++.. |.+..+....++++....-... ....-+..+..+|..+..+++
T Consensus 245 q~y~~a~el~-~~it~~~n~aA~~~e~-~~~~~c~~~c~~a~E~gre~ra---------d~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 245 QHYAKALELA-TDITYLNNIAAVYLER-GKYAECIELCEKAVEVGRELRA---------DYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred HHHHHHHhHh-hhhHHHHHHHHHHHhc-cHHHHhhcchHHHHHHhHHHHH---------HHHHHHHHHHHhhhhhhhHHh
Confidence 3577888888 8888888888999999 9999888888776643321111 111234455568889999999
Q ss_pred HHHHHHHHHHHHHhCCC--CCc-------------------hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 84 WSESLAKYNEALRSCPR--SCS-------------------VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~--~~~-------------------~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
++.|+.+|.+++..... ..+ ...+.--...|.. +++.|+|..|+.+|.++|..
T Consensus 314 ~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne------~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNE------AFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHH------HHhccCHHHHHHHHHHHHhc
Confidence 99999999999886543 110 1112223334555 99999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 143 NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
+|+++..|.++|.||.++|.+..|+.+.+++++++|++..+|..-|.++ .-++++.+|++.|.+.+ .+|++-.
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al-~~mk~ydkAleay~eale~dp~~~e 461 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAAL-RAMKEYDKALEAYQEALELDPSNAE 461 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCchhHH
Confidence 9999999999999999999999999999999999999999999999998 99999999999999999 9986543
No 52
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.61 E-value=1.1e-14 Score=130.60 Aligned_cols=188 Identities=15% Similarity=0.088 Sum_probs=149.2
Q ss_pred chhhcccCCchH-HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH----HHHHHHHHHHHHH
Q psy13014 6 YQQELSKNPSFL-YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQT----AISLKDEGNALFR 80 (229)
Q Consensus 6 ~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~ 80 (229)
|+++++.+|..+ .+...+|.++... |++++|...|++++ ...|.. ......++..+..
T Consensus 260 ~~~ll~~~~~~P~~a~~~la~~yl~~-g~~e~A~~~l~~~l----------------~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 260 YQRLKAEGQIIPPWAQRWVASAYLKL-HQPEKAQSILTELF----------------YHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHhhccCCCCCHHHHHHHHHHHHhc-CCcHHHHHHHHHHh----------------hcCCCCCCCChHHHHHHHHHHHh
Confidence 555555543222 1333346667777 77777777776654 222222 3456677778899
Q ss_pred ccCHHHHHHHHHHHHHhCCCCC----------chhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHH
Q psy13014 81 LNQWSESLAKYNEALRSCPRSC----------SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVY 150 (229)
Q Consensus 81 ~~~~~~A~~~~~~al~~~p~~~----------~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (229)
.+++++|+..++++....|... ......++..+|.+ +...|++++|++.+++++...|+++.++
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~------l~~~g~~~eA~~~l~~al~~~P~n~~l~ 396 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQV------AKYSNDLPQAEMRARELAYNAPGNQGLR 396 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999877321 00124577889999 9999999999999999999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCccc
Q psy13014 151 QRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQI 217 (229)
Q Consensus 151 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~ 217 (229)
..+|.++...|++++|+..+++++.++|++..++..++.+. ...+++.+|...+.+++ ..|++..+
T Consensus 397 ~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a-l~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 397 IDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA-LDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH-HHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999999999999999987 88999999999999999 99976544
No 53
>KOG1129|consensus
Probab=99.61 E-value=9.5e-16 Score=119.47 Aligned_cols=190 Identities=13% Similarity=0.082 Sum_probs=156.9
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
|.+.+...|.+...+...+.++-.+ ++++++..+|+..+ +..+.+.++...+|..|+-.++.+
T Consensus 279 ~~~gld~fP~~VT~l~g~ARi~eam-~~~~~a~~lYk~vl----------------k~~~~nvEaiAcia~~yfY~~~PE 341 (478)
T KOG1129|consen 279 IGEGLDSFPFDVTYLLGQARIHEAM-EQQEDALQLYKLVL----------------KLHPINVEAIACIAVGYFYDNNPE 341 (478)
T ss_pred HhhhhhcCCchhhhhhhhHHHHHHH-HhHHHHHHHHHHHH----------------hcCCccceeeeeeeeccccCCChH
Confidence 4556677777777777777777777 77777777776665 566777777777777888888888
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC--C-cHHHHHHHHHHHHhccc
Q psy13014 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP--S-YLKVYQRRARLYQQSDK 162 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~-~~~~~~~la~~~~~~~~ 162 (229)
-|+.+|.+.+++.-.+ ++++.|+|.| .+..++++-++..|.+|+..-. + -.++|+++|.+....|+
T Consensus 342 ~AlryYRRiLqmG~~s-----peLf~NigLC------C~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD 410 (478)
T KOG1129|consen 342 MALRYYRRILQMGAQS-----PELFCNIGLC------CLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD 410 (478)
T ss_pred HHHHHHHHHHHhcCCC-----hHHHhhHHHH------HHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc
Confidence 8888888888887777 9999999999 9999999999999999988643 3 36789999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcccccCCCCc
Q psy13014 163 LDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQIQHNPETI 224 (229)
Q Consensus 163 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~~~~~~~ 224 (229)
+..|..+|+-++..||++.+++.+++.+. -+.++..+|...+..+- +.|+-++...|....
T Consensus 411 ~nlA~rcfrlaL~~d~~h~ealnNLavL~-~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 411 FNLAKRCFRLALTSDAQHGEALNNLAVLA-ARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred hHHHHHHHHHHhccCcchHHHHHhHHHHH-hhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 99999999999999999999999999887 78889999998888888 888777766665443
No 54
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.61 E-value=4.3e-14 Score=124.03 Aligned_cols=146 Identities=10% Similarity=-0.012 Sum_probs=131.2
Q ss_pred ccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHH
Q psy13014 11 SKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAK 90 (229)
Q Consensus 11 ~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 90 (229)
..-|.+..+++.+|.+.... |.+++|...++.++ +..|++..++..++.++.+.+++++|+..
T Consensus 80 ~~~~~~~~~~~~La~i~~~~-g~~~ea~~~l~~~~----------------~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~ 142 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAA-HRSDEGLAVWRGIH----------------QRFPDSSEAFILMLRGVKRQQGIEAGRAE 142 (694)
T ss_pred HhccccHHHHHHHHHHHHHc-CCcHHHHHHHHHHH----------------hhCCCcHHHHHHHHHHHHHhccHHHHHHH
Confidence 45678889999999999999 99999999998887 67789999999999999999999999999
Q ss_pred HHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHH
Q psy13014 91 YNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADY 170 (229)
Q Consensus 91 ~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (229)
+++++..+|++ +..++.+|.+ +..+|++++|++.|++++..+|+++.++..+|.++...|+.++|+..|
T Consensus 143 ~~~~l~~~p~~-----~~~~~~~a~~------l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 143 IELYFSGGSSS-----AREILLEAKS------WDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred HHHHhhcCCCC-----HHHHHHHHHH------HHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999 9999999999 999999999999999999989999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHH
Q psy13014 171 QKILELDPNNRDAY 184 (229)
Q Consensus 171 ~~al~~~p~~~~~~ 184 (229)
++++....+-...+
T Consensus 212 ~~a~~~~~~~~~~~ 225 (694)
T PRK15179 212 QAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHhhCcchHHH
Confidence 99998876655443
No 55
>KOG0624|consensus
Probab=99.59 E-value=4.2e-14 Score=111.03 Aligned_cols=192 Identities=13% Similarity=0.202 Sum_probs=164.7
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.|-.+++.||++..++|..|.+|+.+ |+-..|..-+.+.+ ...|+...+....|.++.++|++
T Consensus 60 ~yHaAve~dp~~Y~aifrRaT~yLAm-Gksk~al~Dl~rVl----------------elKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 60 HYHAAVEGDPNNYQAIFRRATVYLAM-GKSKAALQDLSRVL----------------ELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHcCCchhHHHHHHHHHHHhhh-cCCccchhhHHHHH----------------hcCccHHHHHHHhchhhhhcccH
Confidence 47789999999999999999999999 99999999888877 67788888999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhh------hhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAA------LEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQ 158 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~------~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 158 (229)
++|...|+.++..+|++... ..+...++.+ ..-+-+++..|++..||+.....+++.|-++..+...+.||.
T Consensus 123 e~A~~DF~~vl~~~~s~~~~--~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLV--LEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHHhcCCCcchh--HHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 99999999999999976432 2222222222 111223778899999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 159 QSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 159 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
..|+...||..++.+-++..++.+.++.++.++ ..+++...++...+.-+ ++|++-.
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~-Y~vgd~~~sL~~iRECLKldpdHK~ 258 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLL-YTVGDAENSLKEIRECLKLDPDHKL 258 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHH-HhhhhHHHHHHHHHHHHccCcchhh
Confidence 999999999999999999999999999999998 88999999999998888 9986543
No 56
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.58 E-value=4.6e-14 Score=100.16 Aligned_cols=118 Identities=15% Similarity=0.139 Sum_probs=110.4
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
-|+++++.+|++....+.+|..+... |++++|...+++.+ ...|.++.++..+|.++...|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~----------------~~~p~~~~~~~~la~~~~~~~~~ 67 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQ-GRYDEALKLFQLLA----------------AYDPYNSRYWLGLAACCQMLKEY 67 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHc-ccHHHHHHHHHHHH----------------HhCCCcHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999 99999999998877 45688899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHH
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVY 150 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (229)
++|+..+++++..+|.+ +..++.+|.+ +...|++++|+..++++++.+|++....
T Consensus 68 ~~A~~~~~~~~~~~p~~-----~~~~~~la~~------~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 68 EEAIDAYALAAALDPDD-----PRPYFHAAEC------LLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHHHHHhcCCCC-----hHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 99999999999999999 9999999999 9999999999999999999999887643
No 57
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.57 E-value=7.9e-14 Score=108.27 Aligned_cols=154 Identities=12% Similarity=0.033 Sum_probs=124.7
Q ss_pred cchhhcccCCchH---HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHc
Q psy13014 5 PYQQELSKNPSFL---YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRL 81 (229)
Q Consensus 5 ~~~~~l~~~p~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 81 (229)
.|++++..+|+++ .+++.+|.++... |++++|...+++.+... ...+....+++.+|.+++..
T Consensus 55 ~~~~~~~~~p~~~~~~~a~~~la~~~~~~-~~~~~A~~~~~~~l~~~-------------p~~~~~~~a~~~~g~~~~~~ 120 (235)
T TIGR03302 55 YFEALESRYPFSPYAEQAQLDLAYAYYKS-GDYAEAIAAADRFIRLH-------------PNHPDADYAYYLRGLSNYNQ 120 (235)
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHC-------------cCCCchHHHHHHHHHHHHHh
Confidence 4677889999876 5789999999999 99999999999988221 12233345789999999886
Q ss_pred --------cCHHHHHHHHHHHHHhCCCCCchhhH------------HHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 82 --------NQWSESLAKYNEALRSCPRSCSVSRA------------VFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 82 --------~~~~~A~~~~~~al~~~p~~~~~~~~------------~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
|++++|+..|++++..+|++...... .....+|.+ ++..|++.+|+..+.+++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~------~~~~g~~~~A~~~~~~al~ 194 (235)
T TIGR03302 121 IDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARF------YLKRGAYVAAINRFETVVE 194 (235)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHcCChHHHHHHHHHHHH
Confidence 89999999999999999987321111 112356777 9999999999999999999
Q ss_pred cCCCc---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q psy13014 142 LNPSY---LKVYQRRARLYQQSDKLDEALADYQKILELDP 178 (229)
Q Consensus 142 ~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 178 (229)
..|++ +.+++.+|.++..+|++++|+.+++......|
T Consensus 195 ~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 195 NYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 97764 58999999999999999999999887766555
No 58
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.57 E-value=7.7e-14 Score=122.43 Aligned_cols=136 Identities=13% Similarity=0.053 Sum_probs=131.3
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
...++++.+++.+|.+..+.|.+++|...++.++.+.|++ ..++.+++.+ +.+++++++|+..+++++.
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~-----~~a~~~~a~~------L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS-----SEAFILMLRG------VKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc-----HHHHHHHHHH------HHHhccHHHHHHHHHHHhh
Confidence 4567889999999999999999999999999999999999 9999999999 9999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
.+|+++.+++.+|.++..+|++++|+..|++++..+|+++.++..+|.++ ...++.++|...|.+++
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l-~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSL-TRRGALWRARDVLQAGL 215 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 88999999999998887
No 59
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.56 E-value=1.3e-13 Score=123.79 Aligned_cols=171 Identities=15% Similarity=0.105 Sum_probs=147.1
Q ss_pred cCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy13014 12 KNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKY 91 (229)
Q Consensus 12 ~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 91 (229)
..|-++.-..-...+.... |+.++++..+.++. ...+..+.++..+|.++...|++++|+..|
T Consensus 10 ~~~~~~~~~~d~~~ia~~~-g~~~~A~~~~~~~~----------------~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~ 72 (765)
T PRK10049 10 KSALSNNQIADWLQIALWA-GQDAEVITVYNRYR----------------VHMQLPARGYAAVAVAYRNLKQWQNSLTLW 72 (765)
T ss_pred ccCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------hhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555444455566677 99999998887776 335667778999999999999999999999
Q ss_pred HHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHH
Q psy13014 92 NEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQ 171 (229)
Q Consensus 92 ~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 171 (229)
++++..+|.+ +.++..+|.+ +...|++++|+..++++++.+|+++. +..+|.++...|++++|+..++
T Consensus 73 ~~al~~~P~~-----~~a~~~la~~------l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~ 140 (765)
T PRK10049 73 QKALSLEPQN-----DDYQRGLILT------LADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMT 140 (765)
T ss_pred HHHHHhCCCC-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999 9999999999 99999999999999999999999999 9999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHhccCchHHHhhhhhcccccccccccC
Q psy13014 172 KILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVFLHP 212 (229)
Q Consensus 172 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~p 212 (229)
++++++|+++.++..++.++ ...+...+|++.+.++...|
T Consensus 141 ~al~~~P~~~~~~~~la~~l-~~~~~~e~Al~~l~~~~~~p 180 (765)
T PRK10049 141 QALPRAPQTQQYPTEYVQAL-RNNRLSAPALGAIDDANLTP 180 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHH-HHCCChHHHHHHHHhCCCCH
Confidence 99999999999999999887 66666677777766555443
No 60
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.54 E-value=8.6e-14 Score=124.17 Aligned_cols=179 Identities=14% Similarity=0.081 Sum_probs=141.2
Q ss_pred hcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHH
Q psy13014 9 ELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESL 88 (229)
Q Consensus 9 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 88 (229)
..-..|+.+...+..+++.+.. |++..|...|.+++ ...|..+.....+..++...|+.++|+
T Consensus 26 ~~~~~p~~~~~~y~~aii~~r~-Gd~~~Al~~L~qaL----------------~~~P~~~~av~dll~l~~~~G~~~~A~ 88 (822)
T PRK14574 26 GFVVNPAMADTQYDSLIIRARA-GDTAPVLDYLQEES----------------KAGPLQSGQVDDWLQIAGWAGRDQEVI 88 (822)
T ss_pred ccccCccchhHHHHHHHHHHhC-CCHHHHHHHHHHHH----------------hhCccchhhHHHHHHHHHHcCCcHHHH
Confidence 3456899999999999999999 99999999999888 566666434447777888889999999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHH
Q psy13014 89 AKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALA 168 (229)
Q Consensus 89 ~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 168 (229)
.++++++...|.. ......+|.+ +..+|++++|++.|+++++.+|+++.++..++.++...++.++|+.
T Consensus 89 ~~~eka~~p~n~~-----~~~llalA~l------y~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~ 157 (822)
T PRK14574 89 DVYERYQSSMNIS-----SRGLASAARA------YRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLK 157 (822)
T ss_pred HHHHHhccCCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 9999988333333 4455555778 8888999999999999999999998888888888889999999999
Q ss_pred HHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCccc
Q psy13014 169 DYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQI 217 (229)
Q Consensus 169 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~ 217 (229)
.+++++..+|.+... ..++.++ ...++..+|++.+++++ .+|++.++
T Consensus 158 ~l~~l~~~dp~~~~~-l~layL~-~~~~~~~~AL~~~ekll~~~P~n~e~ 205 (822)
T PRK14574 158 QATELAERDPTVQNY-MTLSYLN-RATDRNYDALQASSEAVRLAPTSEEV 205 (822)
T ss_pred HHHHhcccCcchHHH-HHHHHHH-HhcchHHHHHHHHHHHHHhCCCCHHH
Confidence 999999888886655 4555555 34556666888888888 88876654
No 61
>KOG3060|consensus
Probab=99.53 E-value=7.7e-13 Score=99.89 Aligned_cols=159 Identities=16% Similarity=0.151 Sum_probs=143.6
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
|+++.....|++..+.-+.|..+-.. |.+++|+++|+..+ ..+|.+..++...--+...+|+.
T Consensus 74 C~~~L~~~fp~S~RV~~lkam~lEa~-~~~~~A~e~y~~lL----------------~ddpt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 74 CINQLRDRFPGSKRVGKLKAMLLEAT-GNYKEAIEYYESLL----------------EDDPTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHh-hchhhHHHHHHHHh----------------ccCcchhHHHHHHHHHHHHcCCc
Confidence 45566667799999999999999888 99999999999888 67788888888888888889999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc---
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSD--- 161 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--- 161 (229)
.+|++.+...++.++.+ .++|..++.+ |+..|+|++|.-++++++-++|.++..+.++|.+++.+|
T Consensus 137 l~aIk~ln~YL~~F~~D-----~EAW~eLaei------Y~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~e 205 (289)
T KOG3060|consen 137 LEAIKELNEYLDKFMND-----QEAWHELAEI------YLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAE 205 (289)
T ss_pred HHHHHHHHHHHHHhcCc-----HHHHHHHHHH------HHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999 9999999999 999999999999999999999999999999999998776
Q ss_pred cHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 162 KLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 162 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
+++-|.++|.++++++|.+..+++.+..+.
T Consensus 206 N~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 206 NLELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 577899999999999998888888887766
No 62
>KOG2002|consensus
Probab=99.51 E-value=1.1e-13 Score=120.68 Aligned_cols=167 Identities=11% Similarity=0.184 Sum_probs=83.2
Q ss_pred CccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc
Q psy13014 3 PLPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN 82 (229)
Q Consensus 3 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 82 (229)
.+.|++++++||++..++..+|.+-... .+- ..+.+++..+. ... ...+.+|.++..++.-++..|
T Consensus 219 ~~a~~ralqLdp~~v~alv~L~~~~l~~-~d~----~s~~~~~~ll~---~ay------~~n~~nP~~l~~LAn~fyfK~ 284 (1018)
T KOG2002|consen 219 LLAFERALQLDPTCVSALVALGEVDLNF-NDS----DSYKKGVQLLQ---RAY------KENNENPVALNHLANHFYFKK 284 (1018)
T ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHc-cch----HHHHHHHHHHH---HHH------hhcCCCcHHHHHHHHHHhhcc
Confidence 5678889999998888888888776655 332 11222221111 111 233444444444444444455
Q ss_pred CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHhcc
Q psy13014 83 QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY-LKVYQRRARLYQQSD 161 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~ 161 (229)
+|..+......++...... ...+..++++|.+ |..+|+|++|..+|.+++..+|++ .-.++.+|.++...|
T Consensus 285 dy~~v~~la~~ai~~t~~~--~~~aes~Y~~gRs------~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~ 356 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTENK--SIKAESFYQLGRS------YHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRG 356 (1018)
T ss_pred cHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHH------HHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhc
Confidence 5554444444444433111 1123344444544 444555555555555554444444 344444455555555
Q ss_pred cHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 162 KLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 162 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
+++.|+.+|++++...|++.+....+|.++
T Consensus 357 dle~s~~~fEkv~k~~p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 357 DLEESKFCFEKVLKQLPNNYETMKILGCLY 386 (1018)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhHH
Confidence 555555555555555555544444444444
No 63
>KOG2002|consensus
Probab=99.50 E-value=5.3e-13 Score=116.45 Aligned_cols=163 Identities=15% Similarity=0.180 Sum_probs=147.2
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
++++...+|.+|.++..++.-++.. |++..+....+.++... ...+..+..++.+|..++.+|+|+
T Consensus 259 l~~ay~~n~~nP~~l~~LAn~fyfK-~dy~~v~~la~~ai~~t-------------~~~~~~aes~Y~~gRs~Ha~Gd~e 324 (1018)
T KOG2002|consen 259 LQRAYKENNENPVALNHLANHFYFK-KDYERVWHLAEHAIKNT-------------ENKSIKAESFYQLGRSYHAQGDFE 324 (1018)
T ss_pred HHHHHhhcCCCcHHHHHHHHHHhhc-ccHHHHHHHHHHHHHhh-------------hhhHHHHHHHHHHHHHHHhhccHH
Confidence 4568889999999999999999999 99999999887776322 245667788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc----
Q psy13014 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSD---- 161 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---- 161 (229)
+|..+|.+++..+|++. .-.++.+|.. +...|+++.|+.+|+++++..|++.++...+|.+|...+
T Consensus 325 kA~~yY~~s~k~~~d~~----~l~~~GlgQm------~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~ 394 (1018)
T KOG2002|consen 325 KAFKYYMESLKADNDNF----VLPLVGLGQM------YIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQE 394 (1018)
T ss_pred HHHHHHHHHHccCCCCc----cccccchhHH------HHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhH
Confidence 99999999999999872 6678999999 999999999999999999999999999999999999886
Q ss_pred cHHHHHHHHHHHHHhCCCcHHHHHHhccCch
Q psy13014 162 KLDEALADYQKILELDPNNRDAYVATKVSPD 192 (229)
Q Consensus 162 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 192 (229)
..++|...+.+++...|.+.++|..++.++.
T Consensus 395 ~~d~a~~~l~K~~~~~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 395 KRDKASNVLGKVLEQTPVDSEAWLELAQLLE 425 (1018)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 6789999999999999999999999999973
No 64
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.49 E-value=1.5e-12 Score=90.03 Aligned_cols=112 Identities=14% Similarity=0.161 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc-
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY- 146 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~- 146 (229)
+.+++..|..+...|++++|+..|.+++..+|++.. .+.+++.+|.+ ++..|++++|+..|++++...|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY--APNAHYWLGEA------YYAQGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc--cHHHHHHHHHH------HHhhccHHHHHHHHHHHHHHCCCCC
Confidence 357889999999999999999999999999886511 25688999999 999999999999999999998885
Q ss_pred --HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHh
Q psy13014 147 --LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVAT 187 (229)
Q Consensus 147 --~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 187 (229)
+.+++.+|.++...|++++|+..+.+++...|++..+....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 67899999999999999999999999999999988766544
No 65
>KOG0550|consensus
Probab=99.49 E-value=1.2e-13 Score=110.54 Aligned_cols=172 Identities=17% Similarity=0.199 Sum_probs=149.4
Q ss_pred CchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy13014 14 PSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNE 93 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 93 (229)
|....+.+..+.++... |++.+|...--..+ +.++.+..+++..|.+++...+.+.|+.+|++
T Consensus 166 pac~~a~~lka~cl~~~-~~~~~a~~ea~~il----------------kld~~n~~al~vrg~~~yy~~~~~ka~~hf~q 228 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFL-GDYDEAQSEAIDIL----------------KLDATNAEALYVRGLCLYYNDNADKAINHFQQ 228 (486)
T ss_pred chhhHHHHhhhhhhhhc-ccchhHHHHHHHHH----------------hcccchhHHHHhcccccccccchHHHHHHHhh
Confidence 55567788888888888 99998887554444 57789999999999999999999999999999
Q ss_pred HHHhCCCCCch-------hhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHhccc
Q psy13014 94 ALRSCPRSCSV-------SRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY----LKVYQRRARLYQQSDK 162 (229)
Q Consensus 94 al~~~p~~~~~-------~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~ 162 (229)
++.++|++.+. .....+...|.- .++.|+|..|.+.|..+|.++|++ +..|.++|.+...+|+
T Consensus 229 al~ldpdh~~sk~~~~~~k~le~~k~~gN~------~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr 302 (486)
T KOG0550|consen 229 ALRLDPDHQKSKSASMMPKKLEVKKERGND------AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR 302 (486)
T ss_pred hhccChhhhhHHhHhhhHHHHHHHHhhhhh------HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC
Confidence 99999987431 123344555555 899999999999999999999987 4569999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 163 LDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 163 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
..+|+.....+++++|....++...+.|+ .-++++++|++++++++
T Consensus 303 l~eaisdc~~Al~iD~syikall~ra~c~-l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 303 LREAISDCNEALKIDSSYIKALLRRANCH-LALEKWEEAVEDYEKAM 348 (486)
T ss_pred chhhhhhhhhhhhcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 89999999999999887
No 66
>KOG1129|consensus
Probab=99.48 E-value=8.3e-14 Score=108.77 Aligned_cols=161 Identities=14% Similarity=0.065 Sum_probs=147.4
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
|..+++.+|.+.++....|.-++.- ++.+.|..+|.+.+ .....+++.+.++|.|++-.++++
T Consensus 313 Yk~vlk~~~~nvEaiAcia~~yfY~-~~PE~AlryYRRiL----------------qmG~~speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 313 YKLVLKLHPINVEAIACIAVGYFYD-NNPEMALRYYRRIL----------------QMGAQSPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHhcCCccceeeeeeeeccccC-CChHHHHHHHHHHH----------------HhcCCChHHHhhHHHHHHhhcchh
Confidence 6778999999999999999999998 99999999998887 455678899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHH
Q psy13014 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDE 165 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 165 (229)
-++..|++++....+. ...+++|+|+|.+ ....|++.-|..+|+-++..+|++..++.++|..-...|+.++
T Consensus 376 ~~L~sf~RAlstat~~--~~aaDvWYNlg~v------aV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~ 447 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQP--GQAADVWYNLGFV------AVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILG 447 (478)
T ss_pred hhHHHHHHHHhhccCc--chhhhhhhcccee------EEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHH
Confidence 9999999999985432 1138999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 166 ALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 166 A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
|...+..+-+..|+..+...+++.+.
T Consensus 448 Arsll~~A~s~~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 448 ARSLLNAAKSVMPDMAEVTTNLQFMS 473 (478)
T ss_pred HHHHHHHhhhhCccccccccceeEEe
Confidence 99999999999999999998888764
No 67
>KOG4162|consensus
Probab=99.46 E-value=1.2e-12 Score=111.98 Aligned_cols=189 Identities=15% Similarity=0.105 Sum_probs=149.4
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.++++++++|+|+.+.|.++.-+... ++++.|..+..+++.. .....+.+|..++.++...+++
T Consensus 466 ale~av~~d~~dp~~if~lalq~A~~-R~l~sAl~~~~eaL~l---------------~~~~~~~~whLLALvlSa~kr~ 529 (799)
T KOG4162|consen 466 ALEEAVQFDPTDPLVIFYLALQYAEQ-RQLTSALDYAREALAL---------------NRGDSAKAWHLLALVLSAQKRL 529 (799)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHH-HhHHHHHHHHHHHHHh---------------cCCccHHHHHHHHHHHhhhhhh
Confidence 57889999999999999999999999 9999999988887743 1234444555555555555555
Q ss_pred HHHHHHHHHHHHhCCCCCc-------------------------------------------------------------
Q psy13014 85 SESLAKYNEALRSCPRSCS------------------------------------------------------------- 103 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~------------------------------------------------------------- 103 (229)
.+|+...+.++.-.|+|..
T Consensus 530 ~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a 609 (799)
T KOG4162|consen 530 KEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDA 609 (799)
T ss_pred HHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccccc
Confidence 5555555555444444100
Q ss_pred -----------------------------------------------------------------------hhhHHHHHh
Q psy13014 104 -----------------------------------------------------------------------VSRAVFYAN 112 (229)
Q Consensus 104 -----------------------------------------------------------------------~~~~~~~~~ 112 (229)
...+..|+.
T Consensus 610 ~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~ 689 (799)
T KOG4162|consen 610 ISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYL 689 (799)
T ss_pred chhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHH
Confidence 001455666
Q ss_pred HhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHH--HHHHHHHhCCCcHHHHHHhccC
Q psy13014 113 RSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALA--DYQKILELDPNNRDAYVATKVS 190 (229)
Q Consensus 113 lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~l~~~ 190 (229)
.|.+ +...|+.++|.+.|..|+.++|+++....-+|.++...|+..-|.. .+..++++||.++++|+.+|.+
T Consensus 690 ~G~~------~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v 763 (799)
T KOG4162|consen 690 RGLL------LEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEV 763 (799)
T ss_pred hhHH------HHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 6667 8888999999999999999999999999999999999998877777 9999999999999999999999
Q ss_pred chHHHhhhhhccccccccc-ccCCCcc
Q psy13014 191 PDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 191 ~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
. .+.|+...|...|..++ +++.++-
T Consensus 764 ~-k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 764 F-KKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred H-HHccchHHHHHHHHHHHhhccCCCc
Confidence 9 89999999999999998 8876543
No 68
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.46 E-value=4.5e-13 Score=83.76 Aligned_cols=66 Identities=29% Similarity=0.445 Sum_probs=64.7
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCC
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSD-KLDEALADYQKILELDP 178 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p 178 (229)
+..|..+|.+ ++..|++++|+.+|+++++++|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~------~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQI------YFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHH------HHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 8899999999 999999999999999999999999999999999999999 89999999999999998
No 69
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.45 E-value=3.4e-12 Score=90.85 Aligned_cols=108 Identities=15% Similarity=0.110 Sum_probs=100.8
Q ss_pred cccC-CchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHH
Q psy13014 10 LSKN-PSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESL 88 (229)
Q Consensus 10 l~~~-p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 88 (229)
..+. ++.....|.+|..+... |++++|...|+-.. ..+|.++..|+.+|.++-.+|+|.+|+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~-G~l~~A~~~f~~L~----------------~~Dp~~~~y~~gLG~~~Q~~g~~~~AI 89 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEV-KEFAGAARLFQLLT----------------IYDAWSFDYWFRLGECCQAQKHWGEAI 89 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH----------------HhCcccHHHHHHHHHHHHHHhhHHHHH
Confidence 4567 88999999999999999 99999999997776 578999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 89 AKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 89 ~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
..|.+++.++|++ +..+++.|.| ++..|+.+.|.+.|+.++.....
T Consensus 90 ~aY~~A~~L~~dd-----p~~~~~ag~c------~L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 90 YAYGRAAQIKIDA-----PQAPWAAAEC------YLACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHHHHHHhcCCCC-----chHHHHHHHH------HHHcCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999 9999999999 99999999999999999998633
No 70
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.45 E-value=6.1e-12 Score=105.52 Aligned_cols=190 Identities=8% Similarity=-0.046 Sum_probs=150.7
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH----HHHH-----HHH---H----------H----hhh
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFY----IQFI-----FHV---L----------F----YLF 59 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~-----~~~---~----------~----~~~ 59 (229)
+++.++..|+++.++...+.++... |+++.+...+.+.... -..+ ... + . +..
T Consensus 176 l~~l~~~~P~~~~~l~ll~~~~~~~-~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMAPRHKEVLKLAEEAYIRS-GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5667889999999999999999999 9999998888766522 0000 000 0 0 111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHH--HHhHhhhhhhhHHhhccCChHHHHHHHH
Q psy13014 60 CSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVF--YANRSAALEKLASYLSLEKPDQSILACS 137 (229)
Q Consensus 60 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~--~~~lg~~~~~~~~~~~~~~~~~A~~~~~ 137 (229)
.....++++..+...|..+...|++++|...++++++..|++ ... ....... ....++.+.+++.++
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~-----~~~~~~~l~~~~------~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD-----RAISLPLCLPIP------RLKPEDNEKLEKLIE 323 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc-----ccchhHHHHHhh------hcCCCChHHHHHHHH
Confidence 112223578899999999999999999999999999999987 432 1223333 445688999999999
Q ss_pred HHHhcCCCcH--HHHHHHHHHHHhcccHHHHHHHHH--HHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 138 KAITLNPSYL--KVYQRRARLYQQSDKLDEALADYQ--KILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 138 ~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
++++..|+++ ..+..+|.++...|++++|.++|+ .+++.+|++.. +..++.++ .+.++..+|.+.|.+.+
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll-~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAF-DQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHH-HHcCCHHHHHHHHHHHH
Confidence 9999999999 888999999999999999999999 68889998776 45999998 88999999998888864
No 71
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.44 E-value=3e-12 Score=83.76 Aligned_cols=99 Identities=37% Similarity=0.564 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHH
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKV 149 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (229)
+++.+|..+...|++++|+..+++++...|.+ ..++..+|.+ +...+++++|+..+++++...|.+..+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~ 70 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN-----ADAYYNLAAA------YYKLGKYEEALEDYEKALELDPDNAKA 70 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc-----HHHHHHHHHH------HHHHHHHHHHHHHHHHHHhCCCcchhH
Confidence 47789999999999999999999999999988 8899999999 999999999999999999999999999
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy13014 150 YQRRARLYQQSDKLDEALADYQKILELDPN 179 (229)
Q Consensus 150 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 179 (229)
+..+|.++...|++++|...+.+++..+|.
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999998874
No 72
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.44 E-value=7.7e-12 Score=92.53 Aligned_cols=112 Identities=23% Similarity=0.337 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
...+..+..++.+|..+...|++++|+.+|++++...|+.. ....++.++|.+ +..+|++++|+.++.+++.
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~la~~------~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN--DRSYILYNMGII------YASNGEHDKALEYYHQALE 100 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHH
Confidence 45678888999999999999999999999999999877541 125789999999 9999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhccc--------------HHHHHHHHHHHHHhCCCcH
Q psy13014 142 LNPSYLKVYQRRARLYQQSDK--------------LDEALADYQKILELDPNNR 181 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~p~~~ 181 (229)
..|++..++..+|.++...|+ +++|.+.+++++..+|++.
T Consensus 101 ~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 101 LNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred hCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 999999999999999999887 6788888888889899873
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.43 E-value=3.3e-12 Score=105.02 Aligned_cols=180 Identities=12% Similarity=0.064 Sum_probs=132.1
Q ss_pred cCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy13014 12 KNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKY 91 (229)
Q Consensus 12 ~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 91 (229)
.||+++.+++.+|.++... |+...+...+.+...... ............|..+...|++++|...+
T Consensus 1 ~dp~~~~a~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~-------------~~~~~~e~~~~~a~~~~~~g~~~~A~~~~ 66 (355)
T cd05804 1 ADPDFALGHAAAALLLLLG-GERPAAAAKAAAAAQALA-------------ARATERERAHVEALSAWIAGDLPKALALL 66 (355)
T ss_pred CCCccHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHhc-------------cCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3799999999999888887 887777666655442111 11233445666777888888888888888
Q ss_pred HHHHHhCCCCCch--------------------------------hhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHH
Q psy13014 92 NEALRSCPRSCSV--------------------------------SRAVFYANRSAALEKLASYLSLEKPDQSILACSKA 139 (229)
Q Consensus 92 ~~al~~~p~~~~~--------------------------------~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~a 139 (229)
++++..+|.+... ........+|.+ +...|++++|+..++++
T Consensus 67 ~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~------~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 67 EQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG------LEEAGQYDRAEEAARRA 140 (355)
T ss_pred HHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH------HHHcCCHHHHHHHHHHH
Confidence 8888877766100 001222333444 77889999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH----HHHHhccCchHHHhhhhhccccccccc-ccC
Q psy13014 140 ITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD----AYVATKVSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 140 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
++++|+++.++..+|.++...|++++|+..+.+++...|.++. .+..++.++ ...++..+|+..+.++. ..|
T Consensus 141 l~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~-~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 141 LELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY-LERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH-HHCCCHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999998875432 345678777 78888999999998876 444
No 74
>KOG0553|consensus
Probab=99.43 E-value=1.7e-12 Score=100.47 Aligned_cols=125 Identities=17% Similarity=0.203 Sum_probs=106.2
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc
Q psy13014 24 CFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCS 103 (229)
Q Consensus 24 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 103 (229)
|--+... ++|.+|+..|.+++ ...|.++..|.+.+.+|.++|+++.|++..+.++.++|.+
T Consensus 88 GN~~m~~-~~Y~eAv~kY~~AI----------------~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-- 148 (304)
T KOG0553|consen 88 GNKLMKN-KDYQEAVDKYTEAI----------------ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-- 148 (304)
T ss_pred HHHHHHh-hhHHHHHHHHHHHH----------------hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH--
Confidence 4444455 66666666666666 7889999999999999999999999999999999999999
Q ss_pred hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHH---HHHHHHHHHHHh
Q psy13014 104 VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD---EALADYQKILEL 176 (229)
Q Consensus 104 ~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~---~A~~~~~~al~~ 176 (229)
..+|..+|.+ |..+|++++|++.|+++|+++|++....-++..+-.+++... .+...++.+-.+
T Consensus 149 ---skay~RLG~A------~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~i 215 (304)
T KOG0553|consen 149 ---SKAYGRLGLA------YLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLI 215 (304)
T ss_pred ---HHHHHHHHHH------HHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhc
Confidence 9999999999 999999999999999999999999999999988888877665 455555544443
No 75
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.42 E-value=1.9e-11 Score=102.17 Aligned_cols=188 Identities=10% Similarity=0.033 Sum_probs=152.4
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH------------H----HHHHHH----------hh
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQ------------F----IFHVLF----------YL 58 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------------~----~~~~~~----------~~ 58 (229)
.+++.++.+|+++.++..++.++... |+++++...+.+...... . ...... |.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~-gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRT-GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 35678889999999999999999999 999999977765542100 0 000000 11
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHH
Q psy13014 59 FCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSK 138 (229)
Q Consensus 59 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~ 138 (229)
......++++.+....+..+...|+.++|...++++++..| + +.+....+.+ ..++++++++.+++
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~-----~~l~~l~~~l--------~~~~~~~al~~~e~ 319 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-D-----ERLVLLIPRL--------KTNNPEQLEKVLRQ 319 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-C-----HHHHHHHhhc--------cCCChHHHHHHHHH
Confidence 22344567888999999999999999999999999999544 4 5555555555 45999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 139 AITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 139 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
.++.+|+++..+..+|.++...+++++|.+.|+++++..|++.. +..++.++ ++.++..+|...|.+.+
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~-~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADAL-DRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHH-HHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999765 45788888 88999999999998886
No 76
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.42 E-value=3.5e-12 Score=114.01 Aligned_cols=163 Identities=12% Similarity=0.099 Sum_probs=138.3
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
-|+++++.+|+++.+..-+..++... |+.++|..++++++ ...+.....+..+|..+..+|++
T Consensus 56 ~L~qaL~~~P~~~~av~dll~l~~~~-G~~~~A~~~~eka~----------------~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 56 YLQEESKAGPLQSGQVDDWLQIAGWA-GRDQEVIDVYERYQ----------------SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHHHHhhCccchhhHHHHHHHHHHc-CCcHHHHHHHHHhc----------------cCCCCCHHHHHHHHHHHHHcCCH
Confidence 47889999999975555777777888 99999999999887 23345556666778899999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHH
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD 164 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 164 (229)
++|++.|+++++.+|++ +.++..++.+ +...++.++|+..+++++..+|.+... ..++.++...++..
T Consensus 119 d~Aiely~kaL~~dP~n-----~~~l~gLa~~------y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~ 186 (822)
T PRK14574 119 DQALALWQSSLKKDPTN-----PDLISGMIMT------QADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHHHHHHhhCCCC-----HHHHHHHHHH------HhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHH
Confidence 99999999999999999 8999999999 999999999999999999999986554 55666666678887
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHhccCchHHHhh
Q psy13014 165 EALADYQKILELDPNNRDAYVATKVSPDLKLKE 197 (229)
Q Consensus 165 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 197 (229)
+|+..++++++.+|++.+++..+..+. .+.+-
T Consensus 187 ~AL~~~ekll~~~P~n~e~~~~~~~~l-~~~~~ 218 (822)
T PRK14574 187 DALQASSEAVRLAPTSEEVLKNHLEIL-QRNRI 218 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC
Confidence 799999999999999999988888776 44443
No 77
>KOG3060|consensus
Probab=99.42 E-value=6.5e-12 Score=94.98 Aligned_cols=144 Identities=14% Similarity=0.110 Sum_probs=127.3
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
...|.........|+.+-..|++++|+++|+..+.-+|.+ ...+-..-.+ ...+|+.-+||+.+.+-++
T Consensus 80 ~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~-----~v~~KRKlAi------lka~GK~l~aIk~ln~YL~ 148 (289)
T KOG3060|consen 80 DRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTD-----TVIRKRKLAI------LKAQGKNLEAIKELNEYLD 148 (289)
T ss_pred HhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcch-----hHHHHHHHHH------HHHcCCcHHHHHHHHHHHH
Confidence 3457777888889999999999999999999999999998 7777665556 7889999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCch--HHHhhhhhccccccccc-ccCCCcc
Q psy13014 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPD--LKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
..+++.++|..++.+|...|+|++|.-++++.+-+.|.++-....++.++. ....++.-+.+.|.+++ +.|.+++
T Consensus 149 ~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 149 KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLR 226 (289)
T ss_pred HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHH
Confidence 999999999999999999999999999999999999999999999998874 23345788899999999 8885543
No 78
>KOG2003|consensus
Probab=99.42 E-value=1.9e-12 Score=105.33 Aligned_cols=192 Identities=14% Similarity=0.089 Sum_probs=139.0
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH-----------------HHHhh-hhhhhHHHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFH-----------------VLFYL-FCSQKLEQT 67 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------------~~~~~-~~~~~~~~~ 67 (229)
|.++|.-+.....++|..|+.+-.+ |+.++|.++|-+.-..+....+ .+.+. ......|++
T Consensus 513 ykeal~ndasc~ealfniglt~e~~-~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~d 591 (840)
T KOG2003|consen 513 YKEALNNDASCTEALFNIGLTAEAL-GNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPND 591 (840)
T ss_pred HHHHHcCchHHHHHHHHhcccHHHh-cCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC
Confidence 6678888888899999999999888 9999999998765422111100 11111 222334566
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
+.++..+|..|-+.|+-.+|..++-...+..|.+ ....-++|.. |....-+++||.+|+++--+.|+..
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyryfp~n-----ie~iewl~ay------yidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN-----IETIEWLAAY------YIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhcccccCcc-----hHHHHHHHHH------HHhhHHHHHHHHHHHHHHhcCccHH
Confidence 6667777777777777777777776777777766 6666777777 7777778899999999999999988
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCch----HHHhhhhhccccccccc
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPD----LKLKEKNGATKLSPDVF 209 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~----~~~~~~~~a~~~~~~~~ 209 (229)
+.....+.|+...|+|++|...|+.....-|.+.+.+..+.+++. ...+++...++..+++-
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d~key~~klek~eki~ 726 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKDAKEYADKLEKAEKIK 726 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Confidence 888888999999999999999999999999999988888887763 22333444444444443
No 79
>KOG1174|consensus
Probab=99.41 E-value=4.7e-12 Score=101.76 Aligned_cols=154 Identities=10% Similarity=0.110 Sum_probs=92.7
Q ss_pred hhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH--
Q psy13014 7 QQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW-- 84 (229)
Q Consensus 7 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-- 84 (229)
.+++..+|++..++...|..+..+ ++.++|+-.|..+... .|-....+..+-.+|...|++
T Consensus 324 eK~I~~~~r~~~alilKG~lL~~~-~R~~~A~IaFR~Aq~L----------------ap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 324 EKCIDSEPRNHEALILKGRLLIAL-ERHTQAVIAFRTAQML----------------APYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred HHHhccCcccchHHHhccHHHHhc-cchHHHHHHHHHHHhc----------------chhhHHHHHHHHHHHHhhchHHH
Confidence 467889999999999999999999 9999999999877633 233333444444444444444
Q ss_pred ----------------------------------HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChH
Q psy13014 85 ----------------------------------SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPD 130 (229)
Q Consensus 85 ----------------------------------~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~ 130 (229)
++|..++++++++.|.+ ..+...+|.. +...|.+.
T Consensus 387 A~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y-----~~AV~~~AEL------~~~Eg~~~ 455 (564)
T KOG1174|consen 387 ANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY-----TPAVNLIAEL------CQVEGPTK 455 (564)
T ss_pred HHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc-----HHHHHHHHHH------HHhhCccc
Confidence 45555555555555555 4445555555 55555555
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhcc
Q psy13014 131 QSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKV 189 (229)
Q Consensus 131 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 189 (229)
.++..+++.+...|+ ...+..+|.++...+.+++|.+.|..|+++||.+..+...+-.
T Consensus 456 D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 456 DIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRL 513 (564)
T ss_pred hHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 555555555555543 2344555555555555555555555555555555555444443
No 80
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.40 E-value=2.7e-12 Score=97.51 Aligned_cols=148 Identities=19% Similarity=0.229 Sum_probs=134.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHH
Q psy13014 60 CSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKA 139 (229)
Q Consensus 60 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~a 139 (229)
.....|++..+ ...+..+...|+-+++.....++...+|.+ ..+...+|.. .+..|++..|+..+.++
T Consensus 59 ~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d-----~~ll~~~gk~------~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 59 AVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD-----RELLAAQGKN------QIRNGNFGEAVSVLRKA 126 (257)
T ss_pred HHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCccc-----HHHHHHHHHH------HHHhcchHHHHHHHHHH
Confidence 33567888888 999999999999999999999999888988 8888889999 99999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcccccccccccC-CCcccc
Q psy13014 140 ITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVFLHP-GQPQIQ 218 (229)
Q Consensus 140 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~p-~~~~~~ 218 (229)
..+.|+++++|..+|.+|.+.|++++|...|.+++++.|.++.+..|++..+ .-.++...|...+..+.+.| .+..+.
T Consensus 127 ~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~-~L~gd~~~A~~lll~a~l~~~ad~~v~ 205 (257)
T COG5010 127 ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSL-LLRGDLEDAETLLLPAYLSPAADSRVR 205 (257)
T ss_pred hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHH-HHcCCHHHHHHHHHHHHhCCCCchHHH
Confidence 9999999999999999999999999999999999999999999999999998 67788999999999998655 466665
Q ss_pred cC
Q psy13014 219 HN 220 (229)
Q Consensus 219 ~~ 220 (229)
+|
T Consensus 206 ~N 207 (257)
T COG5010 206 QN 207 (257)
T ss_pred HH
Confidence 54
No 81
>KOG0624|consensus
Probab=99.40 E-value=1.5e-11 Score=96.92 Aligned_cols=196 Identities=15% Similarity=0.143 Sum_probs=153.4
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
-+.+.|++.|++.-+....|.+++.. |.++.|..-|...+...+........+.. .......+.+......++..|++
T Consensus 94 Dl~rVlelKpDF~~ARiQRg~vllK~-Gele~A~~DF~~vl~~~~s~~~~~eaqsk-l~~~~e~~~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 94 DLSRVLELKPDFMAARIQRGVVLLKQ-GELEQAEADFDQVLQHEPSNGLVLEAQSK-LALIQEHWVLVQQLKSASGSGDC 171 (504)
T ss_pred hHHHHHhcCccHHHHHHHhchhhhhc-ccHHHHHHHHHHHHhcCCCcchhHHHHHH-HHhHHHHHHHHHHHHHHhcCCch
Confidence 46789999999999999999999999 99999999998776432211111111110 12223444566667777889999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHH
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD 164 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 164 (229)
..|++...+.+++.|=+ +.++..++.| |...|+...||..++.+-++..++...++.++.+++..|+.+
T Consensus 172 ~~ai~~i~~llEi~~Wd-----a~l~~~Rakc------~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQPWD-----ASLRQARAKC------YIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred hhHHHHHHHHHhcCcch-----hHHHHHHHHH------HHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHH
Confidence 99999999999999987 9999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHhccCch-----------HHHhhhhhccccccccc-ccCC
Q psy13014 165 EALADYQKILELDPNNRDAYVATKVSPD-----------LKLKEKNGATKLSPDVF-LHPG 213 (229)
Q Consensus 165 ~A~~~~~~al~~~p~~~~~~~~l~~~~~-----------~~~~~~~~a~~~~~~~~-~~p~ 213 (229)
.++...+.+++++|++...+-....+.+ ...+++-+.+...++++ .+|.
T Consensus 241 ~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~ 301 (504)
T KOG0624|consen 241 NSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE 301 (504)
T ss_pred HHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc
Confidence 9999999999999998876554443322 11122445555566666 5554
No 82
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=5.6e-12 Score=98.37 Aligned_cols=196 Identities=11% Similarity=0.082 Sum_probs=157.1
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH-----------HHHHHH----------HHHhhhhh-hh
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFY-----------IQFIFH----------VLFYLFCS-QK 63 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~----------~~~~~~~~-~~ 63 (229)
|...++.+|+..++++.+|.++... |..+.|+..-...+.. +.-..+ .-..+... ..
T Consensus 58 F~e~l~~d~~t~e~~ltLGnLfRsR-GEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de 136 (389)
T COG2956 58 FLEMLQEDPETFEAHLTLGNLFRSR-GEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE 136 (389)
T ss_pred HHHHHhcCchhhHHHHHHHHHHHhc-chHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc
Confidence 5677889999999999999999999 9999998865433311 111110 00011111 12
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
...-..++..+-.+|-..++|++|++.-++..++.+.......+..|..++.. +....+.++|...+.+|++.+
T Consensus 137 ~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~------~~~~~~~d~A~~~l~kAlqa~ 210 (389)
T COG2956 137 GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ------ALASSDVDRARELLKKALQAD 210 (389)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH------HhhhhhHHHHHHHHHHHHhhC
Confidence 33445678888899999999999999999999999988777888999999999 999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH-HHHHHhccCchHHHhhhhhccccccccc
Q psy13014 144 PSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR-DAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 144 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
|+++.+-..+|.+....|+|+.|++.++.+++.||+.. .+.-.+..+| ..+++..+.+..+.+..
T Consensus 211 ~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y-~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 211 KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY-AQLGKPAEGLNFLRRAM 276 (389)
T ss_pred ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999865 4666777777 78888777777766665
No 83
>KOG2076|consensus
Probab=99.40 E-value=3.9e-12 Score=110.37 Aligned_cols=136 Identities=20% Similarity=0.248 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP 144 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 144 (229)
+.....+...|+..+..|++++|...+.++|+++|.+ +.+|..+|.+ |..+|+.++|....-.|-.++|
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~-----~~ay~tL~~I------yEqrGd~eK~l~~~llAAHL~p 204 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRN-----PIAYYTLGEI------YEQRGDIEKALNFWLLAAHLNP 204 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccc-----hhhHHHHHHH------HHHcccHHHHHHHHHHHHhcCC
Confidence 3456788899999999999999999999999999999 9999999999 9999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccC
Q psy13014 145 SYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 145 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
.+...|..++.....+|++++|.-+|.+|++.+|.+.......+.++ +++|+...|+..+.+++ +.|
T Consensus 205 ~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~-~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 205 KDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLY-QKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHH-HHhChHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999 99999999999999999 777
No 84
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.40 E-value=9.1e-13 Score=82.35 Aligned_cols=67 Identities=25% Similarity=0.424 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccC-ChHHHHHHHHHHHhcCC
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE-KPDQSILACSKAITLNP 144 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p 144 (229)
++.+|..+|.+++..|++++|+.+|+++++++|++ +.+++++|.+ +..+| ++++|+++++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-----~~~~~~~g~~------~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-----AEAYYNLGLA------YMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-----HHHHHHHHHH------HHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHH------HHHhCccHHHHHHHHHHHHHcCc
Confidence 46789999999999999999999999999999999 9999999999 99999 79999999999999998
No 85
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.39 E-value=2e-11 Score=99.95 Aligned_cols=150 Identities=17% Similarity=0.166 Sum_probs=111.2
Q ss_pred CCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy13014 13 NPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYN 92 (229)
Q Consensus 13 ~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 92 (229)
+|.-+.++|..+...+.. |++++|...+...+ ...|+++..+...+.++...++..+|++.++
T Consensus 302 ~~~~~aa~YG~A~~~~~~-~~~d~A~~~l~~L~----------------~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~ 364 (484)
T COG4783 302 KRGGLAAQYGRALQTYLA-GQYDEALKLLQPLI----------------AAQPDNPYYLELAGDILLEANKAKEAIERLK 364 (484)
T ss_pred CccchHHHHHHHHHHHHh-cccchHHHHHHHHH----------------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 366677777777777777 77777777776655 5667777777788888888888888888888
Q ss_pred HHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHH
Q psy13014 93 EALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQK 172 (229)
Q Consensus 93 ~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (229)
+++.++|.. +.++.++|.+ +++.|++.+|+..++..+..+|+++..|..+|.+|..+|+-.++...+..
T Consensus 365 kal~l~P~~-----~~l~~~~a~a------ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 365 KALALDPNS-----PLLQLNLAQA------LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHhcCCCc-----cHHHHHHHHH------HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 888888877 7778888888 88888888888888888888888888888888877777777666666666
Q ss_pred HHHhCCCcHHHHHHhccC
Q psy13014 173 ILELDPNNRDAYVATKVS 190 (229)
Q Consensus 173 al~~~p~~~~~~~~l~~~ 190 (229)
...+......+...+...
T Consensus 434 ~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 434 GYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHhCCCHHHHHHHHHHH
Confidence 666665555554444333
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.38 E-value=5.9e-12 Score=103.55 Aligned_cols=154 Identities=12% Similarity=0.003 Sum_probs=122.2
Q ss_pred CchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH------Hhh---------------hhhhhHHHHHHHHH
Q psy13014 14 PSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVL------FYL---------------FCSQKLEQTAISLK 72 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~---------------~~~~~~~~~~~~~~ 72 (229)
++.....+..+.++... |+++++...+++.+...+...... ... ......+.....+.
T Consensus 40 ~~~~e~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 118 (355)
T cd05804 40 ATERERAHVEALSAWIA-GDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLG 118 (355)
T ss_pred CCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHH
Confidence 34566777888888888 999999888887764422111110 000 01134455667778
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH----H
Q psy13014 73 DEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL----K 148 (229)
Q Consensus 73 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~ 148 (229)
.+|.++...|++++|+..+++++.+.|++ +.++..+|.+ +...|++++|+.++++++...|.++ .
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~-----~~~~~~la~i------~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~ 187 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDD-----AWAVHAVAHV------LEMQGRFKEGIAFMESWRDTWDCSSMLRGH 187 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----cHHHHHHHHH------HHHcCCHHHHHHHHHhhhhccCCCcchhHH
Confidence 89999999999999999999999999999 9999999999 9999999999999999999987543 3
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKILELDPN 179 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 179 (229)
.+..+|.++...|++++|+..|++++...|.
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 4668999999999999999999999887773
No 87
>KOG1840|consensus
Probab=99.37 E-value=1.2e-11 Score=104.41 Aligned_cols=183 Identities=17% Similarity=0.130 Sum_probs=148.4
Q ss_pred ccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHH
Q psy13014 11 SKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAK 90 (229)
Q Consensus 11 ~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 90 (229)
...|.-..+...++..+... |+++.|...++.++..+... . ....+.-......+|..|..+++|.+|+..
T Consensus 193 ~~~P~~~~~~~~La~~y~~~-g~~e~A~~l~k~Al~~l~k~---~-----G~~hl~va~~l~~~a~~y~~~~k~~eAv~l 263 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQ-GRLEKAEPLCKQALRILEKT---S-----GLKHLVVASMLNILALVYRSLGKYDEAVNL 263 (508)
T ss_pred cCCchHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHc---c-----CccCHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 35677778888899999999 99999999999887432100 0 023455666666899999999999999999
Q ss_pred HHHHHHhCCCC---CchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHh
Q psy13014 91 YNEALRSCPRS---CSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN--------PSYLKVYQRRARLYQQ 159 (229)
Q Consensus 91 ~~~al~~~p~~---~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~ 159 (229)
|++|+.+.... ..+..+.++.+||.+ |...|++++|..++++|+++. |.-...+.+++.++..
T Consensus 264 y~~AL~i~e~~~G~~h~~va~~l~nLa~l------y~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~ 337 (508)
T KOG1840|consen 264 YEEALTIREEVFGEDHPAVAATLNNLAVL------YYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS 337 (508)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHH------HhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH
Confidence 99999984311 123357889999999 999999999999999999873 2334568889999999
Q ss_pred cccHHHHHHHHHHHHHhC--------CCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 160 SDKLDEALADYQKILELD--------PNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 160 ~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
++++++|+..+++++++. |.-...+.++|.++ ..++++.+|.+.+.+++
T Consensus 338 ~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~-~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 338 MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELY-LKMGKYKEAEELYKKAI 394 (508)
T ss_pred hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH-HHhcchhHHHHHHHHHH
Confidence 999999999999998763 24457888999999 99999999999999988
No 88
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.37 E-value=2.1e-12 Score=83.99 Aligned_cols=84 Identities=20% Similarity=0.293 Sum_probs=74.2
Q ss_pred HccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy13014 80 RLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ 159 (229)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 159 (229)
.+|+|++|+..+++++...|.+. ....++.+|.| ++..|+|++|+..+++ ...+|.+....+.+|.|+..
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~---~~~~~~~la~~------~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNP---NSAYLYNLAQC------YFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK 70 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTH---HHHHHHHHHHH------HHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCCh---hHHHHHHHHHH------HHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999531 26788889999 9999999999999999 88999999999999999999
Q ss_pred cccHHHHHHHHHHH
Q psy13014 160 SDKLDEALADYQKI 173 (229)
Q Consensus 160 ~~~~~~A~~~~~~a 173 (229)
+|++++|+..|+++
T Consensus 71 l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKYEEAIKALEKA 84 (84)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcC
Confidence 99999999999875
No 89
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.37 E-value=1.3e-11 Score=101.38 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=105.9
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy13014 20 IYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCP 99 (229)
Q Consensus 20 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 99 (229)
+...|...+.. |++..|+..|++++ ...|.++.+++.+|.++...|++++|+..+++++.++|
T Consensus 5 l~~~a~~a~~~-~~~~~Ai~~~~~Al----------------~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P 67 (356)
T PLN03088 5 LEDKAKEAFVD-DDFALAVDLYTQAI----------------DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP 67 (356)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHH----------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 45667888888 99999999999998 57788899999999999999999999999999999999
Q ss_pred CCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhccc
Q psy13014 100 RSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK 162 (229)
Q Consensus 100 ~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 162 (229)
.+ +.+++.+|.+ ++.+|++++|+..|+++++++|++..+...++.|...+..
T Consensus 68 ~~-----~~a~~~lg~~------~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 68 SL-----AKAYLRKGTA------CMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred CC-----HHHHHHHHHH------HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99 9999999999 9999999999999999999999999999998888766643
No 90
>KOG1128|consensus
Probab=99.36 E-value=1.9e-12 Score=110.21 Aligned_cols=169 Identities=14% Similarity=0.089 Sum_probs=142.8
Q ss_pred CCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy13014 13 NPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYN 92 (229)
Q Consensus 13 ~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 92 (229)
+|+++..+..+|.+.... .-++.|.+..+ ..++.+...+|...+..++|.++..+++
T Consensus 453 k~~d~~lyc~LGDv~~d~-s~yEkawElsn----------------------~~sarA~r~~~~~~~~~~~fs~~~~hle 509 (777)
T KOG1128|consen 453 KDPDPRLYCLLGDVLHDP-SLYEKAWELSN----------------------YISARAQRSLALLILSNKDFSEADKHLE 509 (777)
T ss_pred CCCcchhHHHhhhhccCh-HHHHHHHHHhh----------------------hhhHHHHHhhccccccchhHHHHHHHHH
Confidence 566666666666665555 33343333332 2334466777777888999999999999
Q ss_pred HHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHH
Q psy13014 93 EALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQK 172 (229)
Q Consensus 93 ~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (229)
..++++|-. ...|+.+|.| ..++++++.|..+|.+++.++|++..+|.+++.+|...|+-.+|...+++
T Consensus 510 ~sl~~nplq-----~~~wf~~G~~------ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~E 578 (777)
T KOG1128|consen 510 RSLEINPLQ-----LGTWFGLGCA------ALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKE 578 (777)
T ss_pred HHhhcCccc-----hhHHHhccHH------HHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence 999999999 9999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHhccCchHHHhhhhhcccccccccccCCCcc
Q psy13014 173 ILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVFLHPGQPQ 216 (229)
Q Consensus 173 al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~p~~~~ 216 (229)
+++.+-++...|-|.-.+. .+.+++..|++.+.+.+..|.+..
T Consensus 579 AlKcn~~~w~iWENymlvs-vdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 579 ALKCNYQHWQIWENYMLVS-VDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred HhhcCCCCCeeeechhhhh-hhcccHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999888 999999999999999885554444
No 91
>KOG4162|consensus
Probab=99.35 E-value=3.3e-11 Score=103.21 Aligned_cols=135 Identities=15% Similarity=0.095 Sum_probs=119.8
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy13014 20 IYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCP 99 (229)
Q Consensus 20 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 99 (229)
|...+..+... +..+++..++.++. ...+..+..++..|..+...|++.+|.+.|..++.++|
T Consensus 653 wllaa~~~~~~-~~~~~a~~CL~Ea~----------------~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP 715 (799)
T KOG4162|consen 653 WLLAADLFLLS-GNDDEARSCLLEAS----------------KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP 715 (799)
T ss_pred HHHHHHHHHhc-CCchHHHHHHHHHH----------------hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 34445444444 66777776666655 57789999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHH--HHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 100 RSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL--ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 100 ~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
++ ..+...+|.+ +...|+..-|.. .+..+++++|.++++|+.+|.++...|+.++|.++|..+++++
T Consensus 716 ~h-----v~s~~Ala~~------lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 716 DH-----VPSMTALAEL------LLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred CC-----cHHHHHHHHH------HHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 99 9999999999 999999888888 9999999999999999999999999999999999999999999
Q ss_pred CCcHH
Q psy13014 178 PNNRD 182 (229)
Q Consensus 178 p~~~~ 182 (229)
+++|.
T Consensus 785 ~S~PV 789 (799)
T KOG4162|consen 785 ESNPV 789 (799)
T ss_pred cCCCc
Confidence 98874
No 92
>KOG2076|consensus
Probab=99.35 E-value=4.7e-11 Score=103.79 Aligned_cols=134 Identities=19% Similarity=0.262 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
...++..|..++.. |++++|...+...+ ...|..+.+|+.+|.+|-++|+.+++...+-.|-.
T Consensus 139 l~~ll~eAN~lfar-g~~eeA~~i~~EvI----------------kqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH 201 (895)
T KOG2076|consen 139 LRQLLGEANNLFAR-GDLEEAEEILMEVI----------------KQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH 201 (895)
T ss_pred HHHHHHHHHHHHHh-CCHHHHHHHHHHHH----------------HhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 56778888889999 99999999998888 78899999999999999999999999999999999
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
++|.+ ...|..++.. ..++|++.+|+-+|.+||+.+|.+....+..+.+|.++|+...|...|.+++.+
T Consensus 202 L~p~d-----~e~W~~ladl------s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 202 LNPKD-----YELWKRLADL------SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL 270 (895)
T ss_pred cCCCC-----hHHHHHHHHH------HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 99999 8999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q psy13014 177 DP 178 (229)
Q Consensus 177 ~p 178 (229)
+|
T Consensus 271 ~p 272 (895)
T KOG2076|consen 271 DP 272 (895)
T ss_pred CC
Confidence 99
No 93
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.35 E-value=5.8e-11 Score=87.50 Aligned_cols=111 Identities=18% Similarity=0.213 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
.....+..++.+|.++..+|++++|+..|++++.+.|+.. ..+.++.++|.+ +...|++++|+..+++++.+
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~--~~~~~~~~lg~~------~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY--DRSYILYNIGLI------HTSNGEHTKALEYYFQALER 101 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch--hhHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHh
Confidence 3455678899999999999999999999999999977531 125689999999 99999999999999999999
Q ss_pred CCCcHHHHHHHHHHHH-------hcccHH-------HHHHHHHHHHHhCCCcH
Q psy13014 143 NPSYLKVYQRRARLYQ-------QSDKLD-------EALADYQKILELDPNNR 181 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~-------~~~~~~-------~A~~~~~~al~~~p~~~ 181 (229)
+|.....+.++|.++. ..|+++ +|+..|++++..+|.+.
T Consensus 102 ~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 102 NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 9999999999999998 666665 67777777888888644
No 94
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=4.9e-11 Score=93.19 Aligned_cols=181 Identities=12% Similarity=0.015 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH----HHH-------Hhhhhh------------hhHHHHHHHHHHH
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIF----HVL-------FYLFCS------------QKLEQTAISLKDE 74 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~-------~~~~~~------------~~~~~~~~~~~~~ 74 (229)
.+++.+|.=|... |-++.|...|...+..-.+.. +.+ .|.+.. ...-+-+..+..+
T Consensus 108 lAl~qL~~Dym~a-Gl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCEL 186 (389)
T COG2956 108 LALQQLGRDYMAA-GLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCEL 186 (389)
T ss_pred HHHHHHHHHHHHh-hhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHH
Confidence 4677788888888 888888888865553111111 111 122111 2233567889999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc-HHHHHHH
Q psy13014 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY-LKVYQRR 153 (229)
Q Consensus 75 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l 153 (229)
+..+....+.+.|...+.+|++.+|++ ..+-..+|.+ ....|+|++|++.++.+++.||.. +.+.-.+
T Consensus 187 Aq~~~~~~~~d~A~~~l~kAlqa~~~c-----vRAsi~lG~v------~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 187 AQQALASSDVDRARELLKKALQADKKC-----VRASIILGRV------ELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhCccc-----eehhhhhhHH------HHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 999999999999999999999999999 8899999999 999999999999999999999986 5678889
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccC
Q psy13014 154 ARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 154 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
..||..+|+.++....+.++.+..+... +...++.+. +..+-...|.....+.+ ..|
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~~~g~~-~~l~l~~li-e~~~G~~~Aq~~l~~Ql~r~P 313 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMETNTGAD-AELMLADLI-ELQEGIDAAQAYLTRQLRRKP 313 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHccCCcc-HHHHHHHHH-HHhhChHHHHHHHHHHHhhCC
Confidence 9999999999999999999999988754 334555444 33444555555555555 555
No 95
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.33 E-value=8.2e-12 Score=77.01 Aligned_cols=64 Identities=31% Similarity=0.446 Sum_probs=59.5
Q ss_pred hHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH
Q psy13014 112 NRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181 (229)
Q Consensus 112 ~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 181 (229)
.+|.. ++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~------~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARA------LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHH------HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHH------HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46777 99999999999999999999999999999999999999999999999999999999975
No 96
>PRK15331 chaperone protein SicA; Provisional
Probab=99.33 E-value=2.9e-11 Score=86.53 Aligned_cols=111 Identities=8% Similarity=-0.062 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
...++.-...+..|.-+++.|++++|...|.-....+|.+ +..|+.+|.| +..+++|++|+..|..+..
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n-----~~Y~~GLaa~------~Q~~k~y~~Ai~~Y~~A~~ 99 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN-----PDYTMGLAAV------CQLKKQFQKACDLYAVAFT 99 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-----HHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 3456777889999999999999999999999999999999 9999999999 9999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHH
Q psy13014 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 184 (229)
++++++...+..|.|+..+|+.+.|..+|+.++. .|.+..+.
T Consensus 100 l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~ 141 (165)
T PRK15331 100 LLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLR 141 (165)
T ss_pred cccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHH
Confidence 9999999999999999999999999999999998 56655443
No 97
>KOG1127|consensus
Probab=99.31 E-value=1.3e-11 Score=108.15 Aligned_cols=178 Identities=13% Similarity=0.143 Sum_probs=132.7
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.|-+++.++|+...++..+|.+|... .+...|..+|.++. ..++.++.++-..+..+....++
T Consensus 480 ali~alrld~~~apaf~~LG~iYrd~-~Dm~RA~kCf~KAF----------------eLDatdaeaaaa~adtyae~~~w 542 (1238)
T KOG1127|consen 480 ALIRALRLDVSLAPAFAFLGQIYRDS-DDMKRAKKCFDKAF----------------ELDATDAEAAAASADTYAEESTW 542 (1238)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHh----------------cCCchhhhhHHHHHHHhhccccH
Confidence 35678999999999999999999998 79999999998887 56667777777777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHH
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD 164 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 164 (229)
+.|......+-+..|.. .....|..+|.. |...+++.+|+.+|+.++..+|++...|..+|.+|...|++.
T Consensus 543 e~a~~I~l~~~qka~a~---~~k~nW~~rG~y------yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~ 613 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKAPAF---ACKENWVQRGPY------YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYS 613 (1238)
T ss_pred HHHHHHHHHHhhhchHH---HHHhhhhhcccc------ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCcee
Confidence 77777754444444432 114455667777 777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 165 EALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 165 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
-|++.|.++..++|.+....+..+.+. ..++++.+++..++..+
T Consensus 614 ~AlKvF~kAs~LrP~s~y~~fk~A~~e-cd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 614 HALKVFTKASLLRPLSKYGRFKEAVME-CDNGKYKEALDALGLII 657 (1238)
T ss_pred hHHHhhhhhHhcCcHhHHHHHHHHHHH-HHhhhHHHHHHHHHHHH
Confidence 777777777777777777777777665 66777777766665554
No 98
>KOG1156|consensus
Probab=99.31 E-value=1.2e-11 Score=104.13 Aligned_cols=143 Identities=13% Similarity=0.074 Sum_probs=127.7
Q ss_pred hhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHH
Q psy13014 7 QQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSE 86 (229)
Q Consensus 7 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 86 (229)
++.|+..|++++++...|..+.-+ |+-++|...-...+ ..++.....|..+|.++...++|++
T Consensus 31 ~~iL~k~~eHgeslAmkGL~L~~l-g~~~ea~~~vr~gl----------------r~d~~S~vCwHv~gl~~R~dK~Y~e 93 (700)
T KOG1156|consen 31 KQILKKFPEHGESLAMKGLTLNCL-GKKEEAYELVRLGL----------------RNDLKSHVCWHVLGLLQRSDKKYDE 93 (700)
T ss_pred HHHHHhCCccchhHHhccchhhcc-cchHHHHHHHHHHh----------------ccCcccchhHHHHHHHHhhhhhHHH
Confidence 456788999999999999999999 99999988777666 5777888899999999999999999
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHH
Q psy13014 87 SLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEA 166 (229)
Q Consensus 87 A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 166 (229)
|+.+|..|+.+.|++ ..++..++.. ..++++++.....-.+.++..|.+-..|...|.++.-.|++..|
T Consensus 94 aiKcy~nAl~~~~dN-----~qilrDlslL------Q~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 94 AIKCYRNALKIEKDN-----LQILRDLSLL------QIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHHHHHHHHhcCCCc-----HHHHHHHHHH------HHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 9999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q psy13014 167 LADYQKILELD 177 (229)
Q Consensus 167 ~~~~~~al~~~ 177 (229)
....+...+..
T Consensus 163 ~~il~ef~~t~ 173 (700)
T KOG1156|consen 163 LEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHhh
Confidence 88887776554
No 99
>KOG2003|consensus
Probab=99.31 E-value=1.2e-11 Score=100.70 Aligned_cols=140 Identities=17% Similarity=0.121 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
.+.-++.++.+.|++.+..|++++|.+.|.+++.-+... ..+++++|.. +..+|+.++|+.+|-+.-.+
T Consensus 485 ~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-----~ealfniglt------~e~~~~ldeald~f~klh~i 553 (840)
T KOG2003|consen 485 IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC-----TEALFNIGLT------AEALGNLDEALDCFLKLHAI 553 (840)
T ss_pred ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH-----HHHHHHhccc------HHHhcCHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555544444 4455555555 55555555555555554444
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCC
Q psy13014 143 NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQ 214 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~ 214 (229)
--+++.+++.++.+|..+.+..+|++++.++.++-|+++.++.-++.++ .+.++.-.|.+.+-.++ .-|.|
T Consensus 554 l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dly-dqegdksqafq~~ydsyryfp~n 625 (840)
T KOG2003|consen 554 LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLY-DQEGDKSQAFQCHYDSYRYFPCN 625 (840)
T ss_pred HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHh-hcccchhhhhhhhhhcccccCcc
Confidence 4444555555555555555555555555555555555555555555555 44444444444444444 44433
No 100
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.31 E-value=3.6e-11 Score=100.44 Aligned_cols=183 Identities=9% Similarity=0.041 Sum_probs=133.2
Q ss_pred hhhcccCCchHHHH-HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 7 QQELSKNPSFLYTI-YFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 7 ~~~l~~~p~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
.++.+.+|++..+. ...+.++... |+++.|...+++.. ...|+++.++..++.++...|+++
T Consensus 142 ~~A~~~~~~~~~~~~l~~a~l~l~~-g~~~~Al~~l~~~~----------------~~~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 142 ERAAELADNDQLPVEITRVRIQLAR-NENHAARHGVDKLL----------------EVAPRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHC-CCHHHHHHHHHHHH----------------hcCCCCHHHHHHHHHHHHHHHhHH
Confidence 34444555543322 2224445445 55555555555444 567888899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCc-------------------------------------hhhHHHHHhHhhhhhhhHHhhccCC
Q psy13014 86 ESLAKYNEALRSCPRSCS-------------------------------------VSRAVFYANRSAALEKLASYLSLEK 128 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~-------------------------------------~~~~~~~~~lg~~~~~~~~~~~~~~ 128 (229)
+|++.+.+..+..+.+.. ...+.++..+|.. +...|+
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~------l~~~g~ 278 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEH------LIECDD 278 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHH------HHHCCC
Confidence 999777777655433200 0013445555666 889999
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcccccccc
Q psy13014 129 PDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDV 208 (229)
Q Consensus 129 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 208 (229)
.++|...++++++. |.++.....++.+ ..++.++++..+++.++..|+++..+..+|+++ .+.+++.+|.+.|+++
T Consensus 279 ~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~-~~~~~~~~A~~~le~a 354 (398)
T PRK10747 279 HDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLL-MKHGEWQEASLAFRAA 354 (398)
T ss_pred HHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHH
Confidence 99999999999994 5566555555544 449999999999999999999999999999999 8899999999999999
Q ss_pred c-ccCCCcc
Q psy13014 209 F-LHPGQPQ 216 (229)
Q Consensus 209 ~-~~p~~~~ 216 (229)
+ .+|++..
T Consensus 355 l~~~P~~~~ 363 (398)
T PRK10747 355 LKQRPDAYD 363 (398)
T ss_pred HhcCCCHHH
Confidence 9 8886543
No 101
>KOG4648|consensus
Probab=99.29 E-value=1.2e-11 Score=97.44 Aligned_cols=113 Identities=27% Similarity=0.446 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHH
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLK 148 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (229)
.-+...|+.|+++|.|++|+.||.+++..+|.+ +..+.++|.+ |+++..+..|...|..|+.++-...+
T Consensus 98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N-----pV~~~NRA~A------Ylk~K~FA~AE~DC~~AiaLd~~Y~K 166 (536)
T KOG4648|consen 98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHN-----PVYHINRALA------YLKQKSFAQAEEDCEAAIALDKLYVK 166 (536)
T ss_pred HHHHHhhhhhhhccchhHHHHHhhhhhccCCCC-----ccchhhHHHH------HHHHHHHHHHHHhHHHHHHhhHHHHH
Confidence 336789999999999999999999999999998 9999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCch
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPD 192 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 192 (229)
+|.+.|.+-..+|+.++|.+.++.++++.|++.+....++.+..
T Consensus 167 AYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 167 AYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 99999999999999999999999999999999998888877764
No 102
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.29 E-value=4.6e-11 Score=106.39 Aligned_cols=197 Identities=14% Similarity=0.105 Sum_probs=146.1
Q ss_pred hhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH---HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 8 QELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQF---IFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 8 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.+++.+|+.+.+++.+|.+++.. +++.++... ..+..... ...+.....+....+++-.+++.+|.||-++|++
T Consensus 56 ~~l~~~P~~i~~yy~~G~l~~q~-~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~ 132 (906)
T PRK14720 56 EHLKEHKKSISALYISGILSLSR-RPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNEN 132 (906)
T ss_pred HHHHhCCcceehHHHHHHHHHhh-cchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCCh
Confidence 57788999999999999988888 887776654 22211110 0011112233445677778999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh--------------------cCC
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT--------------------LNP 144 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~--------------------~~p 144 (229)
++|...|+++++.+|.+ +.+..++|.. |... +.++|++++.+|+. .+|
T Consensus 133 ~ka~~~yer~L~~D~~n-----~~aLNn~AY~------~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~ 200 (906)
T PRK14720 133 KKLKGVWERLVKADRDN-----PEIVKKLATS------YEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNS 200 (906)
T ss_pred HHHHHHHHHHHhcCccc-----HHHHHHHHHH------HHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCc
Confidence 99999999999999999 9999999999 6666 67777666666654 456
Q ss_pred CcHHHHH--------HHH------------HHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHH---------
Q psy13014 145 SYLKVYQ--------RRA------------RLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKL--------- 195 (229)
Q Consensus 145 ~~~~~~~--------~la------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--------- 195 (229)
++...+. ..+ .+|...+++++++..++.+++++|.+..+...++.++..+-
T Consensus 201 ~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~ 280 (906)
T PRK14720 201 DDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDY 280 (906)
T ss_pred ccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHH
Confidence 6544322 223 67788899999999999999999999999999999986111
Q ss_pred ----------hhhhhccccccccc-ccCCCccccc
Q psy13014 196 ----------KEKNGATKLSPDVF-LHPGQPQIQH 219 (229)
Q Consensus 196 ----------~~~~~a~~~~~~~~-~~p~~~~~~~ 219 (229)
+.+..++..|++-+ +++++|-+.+
T Consensus 281 l~~s~l~~~~~~~~~~i~~fek~i~f~~G~yv~H~ 315 (906)
T PRK14720 281 LKMSDIGNNRKPVKDCIADFEKNIVFDTGNFVYHR 315 (906)
T ss_pred HHHhccccCCccHHHHHHHHHHHeeecCCCEEEEc
Confidence 22455677777777 7777776554
No 103
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.28 E-value=1.5e-10 Score=94.99 Aligned_cols=133 Identities=15% Similarity=0.169 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP 144 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 144 (229)
+....+++..+...+..|++++|...++..+...|++ +.++...+.+ ++..|+..+|++.+++++.++|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N-----~~~~~~~~~i------~~~~nk~~~A~e~~~kal~l~P 371 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN-----PYYLELAGDI------LLEANKAKEAIERLKKALALDP 371 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHcCChHHHHHHHHHHHhcCC
Confidence 5677899999999999999999999999999999999 9999999999 9999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 145 SYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 145 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
+.....+++|.++.+.|++.+|+..+...+.-+|+++..|..++..+ ...++..++..-+.+.+
T Consensus 372 ~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay-~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 372 NSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAY-AELGNRAEALLARAEGY 435 (484)
T ss_pred CccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHH-HHhCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 77777666655544443
No 104
>KOG1840|consensus
Probab=99.27 E-value=2e-10 Score=97.10 Aligned_cols=182 Identities=18% Similarity=0.192 Sum_probs=150.0
Q ss_pred cCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy13014 12 KNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKY 91 (229)
Q Consensus 12 ~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 91 (229)
.+|.-..++..+|.+|... |++++|..++++++..... ......++-+..+..++.++..++++++|+.++
T Consensus 278 ~h~~va~~l~nLa~ly~~~-GKf~EA~~~~e~Al~I~~~--------~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~ 348 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQ-GKFAEAEEYCERALEIYEK--------LLGASHPEVAAQLSELAAILQSMNEYEEAKKLL 348 (508)
T ss_pred CCHHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHH--------hhccChHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 3555566788899999999 9999999999998865543 112456788889999999999999999999999
Q ss_pred HHHHHhCC---CCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHhc
Q psy13014 92 NEALRSCP---RSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN--------PSYLKVYQRRARLYQQS 160 (229)
Q Consensus 92 ~~al~~~p---~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~ 160 (229)
++++++.- .......+..+.++|.+ |+.+|++++|.+.+++|+.+. +.....+.++|..+...
T Consensus 349 q~al~i~~~~~g~~~~~~a~~~~nl~~l------~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~ 422 (508)
T KOG1840|consen 349 QKALKIYLDAPGEDNVNLAKIYANLAEL------YLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEEL 422 (508)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHH------HHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHh
Confidence 99998743 22122458899999999 999999999999999999874 33356788999999999
Q ss_pred ccHHHHHHHHHHHHHh-------CCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 161 DKLDEALADYQKILEL-------DPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 161 ~~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
+++.+|...|..++.+ .|+....+.+|+.+| ..+++++.|.+....++
T Consensus 423 k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y-~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 423 KKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALY-RAQGNYEAAEELEEKVL 477 (508)
T ss_pred cccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH-HHcccHHHHHHHHHHHH
Confidence 9999999999988865 355567889999999 89999998888777666
No 105
>KOG1128|consensus
Probab=99.27 E-value=7.5e-11 Score=100.62 Aligned_cols=179 Identities=18% Similarity=0.163 Sum_probs=135.7
Q ss_pred CchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy13014 14 PSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNE 93 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 93 (229)
|........++.++... |-..+|...|++.- .|-....+|...|+..+|..+..+
T Consensus 395 pp~Wq~q~~laell~sl-GitksAl~I~Erle------------------------mw~~vi~CY~~lg~~~kaeei~~q 449 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSL-GITKSALVIFERLE------------------------MWDPVILCYLLLGQHGKAEEINRQ 449 (777)
T ss_pred CCcchHHHHHHHHHHHc-chHHHHHHHHHhHH------------------------HHHHHHHHHHHhcccchHHHHHHH
Confidence 44445556677788888 88888888776654 333444455555555555555555
Q ss_pred HHHhCCCCCchhhHHHHHhHhhh------hh---------------hhHH-hhccCChHHHHHHHHHHHhcCCCcHHHHH
Q psy13014 94 ALRSCPRSCSVSRAVFYANRSAA------LE---------------KLAS-YLSLEKPDQSILACSKAITLNPSYLKVYQ 151 (229)
Q Consensus 94 al~~~p~~~~~~~~~~~~~lg~~------~~---------------~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 151 (229)
-++ .|.. +.+|..+|.+ ++ .+|. ....++|+++..+++..++++|-....|+
T Consensus 450 ~le-k~~d-----~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf 523 (777)
T KOG1128|consen 450 ELE-KDPD-----PRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWF 523 (777)
T ss_pred Hhc-CCCc-----chhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHH
Confidence 555 2222 4444444444 00 0000 55679999999999999999999999999
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcccccCCCCc
Q psy13014 152 RRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQIQHNPETI 224 (229)
Q Consensus 152 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~~~~~~~ 224 (229)
.+|.+..++++++.|+++|..++.++|++..+|.+++..+ -++++..+|...+.+++ -+-++++++-|-...
T Consensus 524 ~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay-i~~~~k~ra~~~l~EAlKcn~~~w~iWENymlv 596 (777)
T KOG1128|consen 524 GLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY-IRLKKKKRAFRKLKEALKCNYQHWQIWENYMLV 596 (777)
T ss_pred hccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH-HHHhhhHHHHHHHHHHhhcCCCCCeeeechhhh
Confidence 9999999999999999999999999999999999999999 89999999999999999 778999998886544
No 106
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.27 E-value=1.5e-10 Score=90.86 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=98.1
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 68 AISLKDEGNAL-FRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 68 ~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
....+..|..+ +..|+|++|+..|+..+...|++. ..+.+++++|.+ |+..|++++|+..|.++++..|++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~--~a~~A~y~LG~~------y~~~g~~~~A~~~f~~vv~~yP~s 213 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST--YQPNANYWLGQL------NYNKGKKDDAAYYFASVVKNYPKS 213 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc--chHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHCCCC
Confidence 36778888876 567999999999999999999872 125799999999 999999999999999999988875
Q ss_pred ---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHH
Q psy13014 147 ---LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186 (229)
Q Consensus 147 ---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 186 (229)
+.+++.+|.++..+|++++|+..|+++++..|+...+...
T Consensus 214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A 256 (263)
T PRK10803 214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQA 256 (263)
T ss_pred cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 6789999999999999999999999999999998876544
No 107
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.27 E-value=7.4e-11 Score=98.98 Aligned_cols=201 Identities=6% Similarity=-0.130 Sum_probs=144.1
Q ss_pred hhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH---H---------------HHH-hhhhhhhHHHH
Q psy13014 7 QQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIF---H---------------VLF-YLFCSQKLEQT 67 (229)
Q Consensus 7 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~---------------~~~-~~~~~~~~~~~ 67 (229)
.++.+..|+....+...|.+.... |+++.+..++.++....+... . ... ........|++
T Consensus 108 ~~~~~~~~~~~~~~llaA~aa~~~-g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~ 186 (409)
T TIGR00540 108 AKNADHAAEPVLNLIKAAEAAQQR-GDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRH 186 (409)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 345556666666777777777777 888888887776543211100 0 000 01123456888
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCch-------------------------------------hhHHHH
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSV-------------------------------------SRAVFY 110 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~-------------------------------------~~~~~~ 110 (229)
+.++..++.++...|++++|++.+.+..+....+... ..+.++
T Consensus 187 ~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~ 266 (409)
T TIGR00540 187 KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALK 266 (409)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHH
Confidence 8999999999999999999999888888653322110 023444
Q ss_pred HhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHH--HHHHHHHHhcccHHHHHHHHHHHHHhCCCcH--HHHHH
Q psy13014 111 ANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVY--QRRARLYQQSDKLDEALADYQKILELDPNNR--DAYVA 186 (229)
Q Consensus 111 ~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~ 186 (229)
..+|.. +...|++++|++.++++++..|++.... ..........++.+.+.+.++++++.+|+++ .....
T Consensus 267 ~~~a~~------l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s 340 (409)
T TIGR00540 267 IALAEH------LIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA 340 (409)
T ss_pred HHHHHH------HHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 444455 8899999999999999999999987532 2233344456888999999999999999999 89999
Q ss_pred hccCchHHHhhhhhcccccc--ccc-ccCCCc
Q psy13014 187 TKVSPDLKLKEKNGATKLSP--DVF-LHPGQP 215 (229)
Q Consensus 187 l~~~~~~~~~~~~~a~~~~~--~~~-~~p~~~ 215 (229)
+|+++ .+.+++.+|.+.++ .++ .+|++.
T Consensus 341 Lg~l~-~~~~~~~~A~~~le~a~a~~~~p~~~ 371 (409)
T TIGR00540 341 LGQLL-MKHGEFIEAADAFKNVAACKEQLDAN 371 (409)
T ss_pred HHHHH-HHcccHHHHHHHHHHhHHhhcCCCHH
Confidence 99999 89999999999999 466 677553
No 108
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.6e-10 Score=89.94 Aligned_cols=115 Identities=20% Similarity=0.186 Sum_probs=104.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccC---ChHHHHHHHH
Q psy13014 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE---KPDQSILACS 137 (229)
Q Consensus 61 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~---~~~~A~~~~~ 137 (229)
...+|+++.-|..+|.+|..+|++..|...|.+++++.|++ ++.+..+|.+ ++... ...++...++
T Consensus 149 L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n-----~~~~~g~aea------L~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 149 LQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN-----PEILLGLAEA------LYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHhcCCcccHHHHHHHH
Confidence 36789999999999999999999999999999999999999 9999999999 65443 4568899999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHH
Q psy13014 138 KAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186 (229)
Q Consensus 138 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 186 (229)
+++..+|.++.+.+.+|..++..|+|.+|+..++..+...|.+..-...
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ 266 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSL 266 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHH
Confidence 9999999999999999999999999999999999999999877654433
No 109
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.25 E-value=3.2e-10 Score=96.62 Aligned_cols=169 Identities=17% Similarity=0.190 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy13014 16 FLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEAL 95 (229)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 95 (229)
+.+.++....++... |++++|...+++.. ....+.....-..|.++.++|++++|...|...+
T Consensus 3 ~SE~lLY~~~il~e~-g~~~~AL~~L~~~~----------------~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li 65 (517)
T PF12569_consen 3 HSELLLYKNSILEEA-GDYEEALEHLEKNE----------------KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELI 65 (517)
T ss_pred HHHHHHHHHHHHHHC-CCHHHHHHHHHhhh----------------hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345667777888888 99999999887655 3445666777888999999999999999999999
Q ss_pred HhCCCCCc------------------------------------------------------------------------
Q psy13014 96 RSCPRSCS------------------------------------------------------------------------ 103 (229)
Q Consensus 96 ~~~p~~~~------------------------------------------------------------------------ 103 (229)
..+|++..
T Consensus 66 ~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPsl 145 (517)
T PF12569_consen 66 DRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSL 145 (517)
T ss_pred HHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchH
Confidence 99888731
Q ss_pred ---------------------------------------------hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHH
Q psy13014 104 ---------------------------------------------VSRAVFYANRSAALEKLASYLSLEKPDQSILACSK 138 (229)
Q Consensus 104 ---------------------------------------------~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~ 138 (229)
....++++.+|.. |-..|++++|++++++
T Consensus 146 F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqh------yd~~g~~~~Al~~Id~ 219 (517)
T PF12569_consen 146 FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQH------YDYLGDYEKALEYIDK 219 (517)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHH------HHHhCCHHHHHHHHHH
Confidence 0011334445555 5666677777777777
Q ss_pred HHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcccccccc
Q psy13014 139 AITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDV 208 (229)
Q Consensus 139 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 208 (229)
+|+..|..++.|+..|.++...|++.+|..+++.|.++|+.|..+-.-.+.-. .+.++.++|.+.....
T Consensus 220 aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~-LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 220 AIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL-LRAGRIEEAEKTASLF 288 (517)
T ss_pred HHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH-HHCCCHHHHHHHHHhh
Confidence 77777777777777777777777777777777777777766665544443333 4555555555554443
No 110
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.25 E-value=3e-11 Score=74.46 Aligned_cols=65 Identities=17% Similarity=0.302 Sum_probs=60.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 72 KDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 72 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
+.+|..++..|++++|+..|+++++.+|.+ +.+++.+|.+ +..+|++++|+..|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~-----~~a~~~lg~~------~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDN-----PEAWYLLGRI------LYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTH-----HHHHHHHHHH------HHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 368999999999999999999999999998 9999999999 9999999999999999999999875
No 111
>KOG0495|consensus
Probab=99.24 E-value=1.2e-10 Score=98.56 Aligned_cols=197 Identities=9% Similarity=-0.020 Sum_probs=123.4
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH------HH------------hhhhhhhHHHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHV------LF------------YLFCSQKLEQT 67 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~------------~~~~~~~~~~~ 67 (229)
|-.+|+.+|.....|...+.+--.. |..++-...+.+++...+...-. .. ........|++
T Consensus 539 ya~alqvfp~k~slWlra~~~ek~h-gt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pns 617 (913)
T KOG0495|consen 539 YAHALQVFPCKKSLWLRAAMFEKSH-GTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNS 617 (913)
T ss_pred HHHHHhhccchhHHHHHHHHHHHhc-CcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCc
Confidence 4456666666666665555544444 66666666666655321100000 00 00111233344
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
-.+|+.--...+...+++.|...+.++....|. ..+|+.-+.. ...+++.++|+..++++++..|+..
T Consensus 618 eeiwlaavKle~en~e~eraR~llakar~~sgT------eRv~mKs~~~------er~ld~~eeA~rllEe~lk~fp~f~ 685 (913)
T KOG0495|consen 618 EEIWLAAVKLEFENDELERARDLLAKARSISGT------ERVWMKSANL------ERYLDNVEEALRLLEEALKSFPDFH 685 (913)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhccCCc------chhhHHHhHH------HHHhhhHHHHHHHHHHHHHhCCchH
Confidence 444544444555555555555555555554443 3445555555 6667888888888888888888888
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
+.|..+|.++..+++.+.|...|...++.-|.....|..++.+. ++.+....|...+.++. .+|++..
T Consensus 686 Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle-Ek~~~~~rAR~ildrarlkNPk~~~ 754 (913)
T KOG0495|consen 686 KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE-EKDGQLVRARSILDRARLKNPKNAL 754 (913)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH-HHhcchhhHHHHHHHHHhcCCCcch
Confidence 88888888888888888888888888888888888888888776 67777777777777777 7776543
No 112
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.24 E-value=4.6e-10 Score=83.03 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=90.6
Q ss_pred CCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy13014 13 NPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYN 92 (229)
Q Consensus 13 ~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 92 (229)
+|....+++.+|..+... |++++|..+|++++...+ ..+..+.++..+|.++...|++++|+..+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~-------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 96 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQAD-GEYAEALENYEEALKLEE-------------DPNDRSYILYNMGIIYASNGEHDKALEYYH 96 (172)
T ss_pred HhhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhh-------------ccchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445666789999999999 999999999998873211 222346789999999999999999999999
Q ss_pred HHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCC--------------hHHHHHHHHHHHhcCCCc
Q psy13014 93 EALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEK--------------PDQSILACSKAITLNPSY 146 (229)
Q Consensus 93 ~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~--------------~~~A~~~~~~al~~~p~~ 146 (229)
+++...|.+ ...+..+|.+ +...|+ +++|++++++++..+|++
T Consensus 97 ~al~~~p~~-----~~~~~~lg~~------~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 97 QALELNPKQ-----PSALNNIAVI------YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHhCccc-----HHHHHHHHHH------HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999998 8999999999 777666 577788888888888876
No 113
>KOG1174|consensus
Probab=99.22 E-value=2.9e-10 Score=91.67 Aligned_cols=197 Identities=15% Similarity=0.107 Sum_probs=143.6
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH---hh---------------hhhhhHHHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLF---YL---------------FCSQKLEQT 67 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~---------------~~~~~~~~~ 67 (229)
|-.-...-|+|...+..+|.+++.. |+..+|+..|++....-++...... ++ .........
T Consensus 221 ~le~~~~lr~NvhLl~~lak~~~~~-Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~t 299 (564)
T KOG1174|consen 221 MLHDNTTLRCNEHLMMALGKCLYYN-GDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYT 299 (564)
T ss_pred HHHhhccCCccHHHHHHHhhhhhhh-cCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcc
Confidence 4445667788999999999999999 9999999999876643222222111 00 001122344
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
+.-|+.-|...+..+++..|+.+-+++|+.+|.+ ...+...|.+ +..+++.++|+-+|+.|+.+.|-..
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~-----~~alilKG~l------L~~~~R~~~A~IaFR~Aq~Lap~rL 368 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRN-----HEALILKGRL------LIALERHTQAVIAFRTAQMLAPYRL 368 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCccc-----chHHHhccHH------HHhccchHHHHHHHHHHHhcchhhH
Confidence 5567777788888888888888888888888888 7888888888 8888888888888888888888888
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhc-cCchHHHhhhhhccccccccc-ccCCC
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATK-VSPDLKLKEKNGATKLSPDVF-LHPGQ 214 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~~~~~~~~~~a~~~~~~~~-~~p~~ 214 (229)
+.|-.+-.+|...|++.+|...-..++..-|.+..+...+| .++...-.-.++|.+.+++.+ ++|+.
T Consensus 369 ~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y 437 (564)
T KOG1174|consen 369 EIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY 437 (564)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc
Confidence 88888888888888888888888888888888888777775 444333333455666666776 77643
No 114
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.21 E-value=8.3e-10 Score=94.57 Aligned_cols=148 Identities=14% Similarity=0.117 Sum_probs=117.0
Q ss_pred cccCCchHHH--HHHHHHHHHHh--hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc---
Q psy13014 10 LSKNPSFLYT--IYFSCFILFIL--FSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN--- 82 (229)
Q Consensus 10 l~~~p~~~~~--~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--- 82 (229)
...-|.++.+ ++..|..+... .+....|...|++++ ..+|+.+.++..++.++....
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai----------------~ldP~~a~a~A~la~~~~~~~~~~ 393 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL----------------KSEPDFTYAQAEKALADIVRHSQQ 393 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH----------------HhCCCcHHHHHHHHHHHHHHHhcC
Confidence 3445666554 66667666543 134678888888887 678888888888888775542
Q ss_pred -----CHHHHHHHHHHHHHh--CCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q psy13014 83 -----QWSESLAKYNEALRS--CPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRAR 155 (229)
Q Consensus 83 -----~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 155 (229)
+...+.....+++.+ +|.. +.++..+|.. ....|++++|...+++|+.++| +..+|..+|.
T Consensus 394 ~~~~~~l~~a~~~~~~a~al~~~~~~-----~~~~~ala~~------~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~ 461 (517)
T PRK10153 394 PLDEKQLAALSTELDNIVALPELNVL-----PRIYEILAVQ------ALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGK 461 (517)
T ss_pred CccHHHHHHHHHHHHHhhhcccCcCC-----hHHHHHHHHH------HHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 345566666676664 5555 7889989999 8899999999999999999999 5889999999
Q ss_pred HHHhcccHHHHHHHHHHHHHhCCCcHHHHH
Q psy13014 156 LYQQSDKLDEALADYQKILELDPNNRDAYV 185 (229)
Q Consensus 156 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 185 (229)
++...|++++|+..|++|+.++|.++..+.
T Consensus 462 ~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~ 491 (517)
T PRK10153 462 VYELKGDNRLAADAYSTAFNLRPGENTLYW 491 (517)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchHHH
Confidence 999999999999999999999999886443
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.20 E-value=2.3e-10 Score=102.09 Aligned_cols=141 Identities=9% Similarity=0.012 Sum_probs=122.0
Q ss_pred cccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHH
Q psy13014 10 LSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLA 89 (229)
Q Consensus 10 l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 89 (229)
...+|++..++..+...+... ++++++....+..+ ...|+....++..|..+++.+++.++..
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~-~~~deai~i~~~~l----------------~~~P~~i~~yy~~G~l~~q~~~~~~~~l 86 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSE-NLTDEAKDICEEHL----------------KEHKKSISALYISGILSLSRRPLNDSNL 86 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhc-CCHHHHHHHHHHHH----------------HhCCcceehHHHHHHHHHhhcchhhhhh
Confidence 357899999999999999888 99999999998777 5778888899999999999988888877
Q ss_pred HHHHHHHhCCCCCc--------------hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q psy13014 90 KYNEALRSCPRSCS--------------VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRAR 155 (229)
Q Consensus 90 ~~~~al~~~p~~~~--------------~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 155 (229)
. .++...+.+.+ .+...+++.+|.| |-++|++++|...|+++++.+|+++.++.++|.
T Consensus 87 v--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~------Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY 158 (906)
T PRK14720 87 L--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEA------YAKLNENKKLKGVWERLVKADRDNPEIVKKLAT 158 (906)
T ss_pred h--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHH------HHHcCChHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 7 66666665510 0013789999999 999999999999999999999999999999999
Q ss_pred HHHhcccHHHHHHHHHHHHHh
Q psy13014 156 LYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 156 ~~~~~~~~~~A~~~~~~al~~ 176 (229)
.|... ++++|++++.+|+..
T Consensus 159 ~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 159 SYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHh-hHHHHHHHHHHHHHH
Confidence 99999 999999999999987
No 116
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.20 E-value=1.1e-09 Score=78.72 Aligned_cols=102 Identities=19% Similarity=0.199 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
.+-...+.+.+|..++..|++++|+..|+.++...|+. .....+...+|.+ ++..|++++|+..++. +.-.
T Consensus 44 s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~--~l~~~a~l~LA~~------~~~~~~~d~Al~~L~~-~~~~ 114 (145)
T PF09976_consen 44 SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP--ELKPLARLRLARI------LLQQGQYDEALATLQQ-IPDE 114 (145)
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH--HHHHHHHHHHHHH------HHHcCCHHHHHHHHHh-ccCc
Confidence 34457788899999999999999999999999987543 2246678889999 9999999999999966 4444
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy13014 144 PSYLKVYQRRARLYQQSDKLDEALADYQKIL 174 (229)
Q Consensus 144 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 174 (229)
+-.+.++..+|.++...|++++|+..|++++
T Consensus 115 ~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 115 AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 5567788889999999999999999999874
No 117
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.19 E-value=1.7e-09 Score=82.12 Aligned_cols=159 Identities=14% Similarity=0.103 Sum_probs=118.8
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy13014 16 FLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEAL 95 (229)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 95 (229)
.+..+|..|...+.. |++.+|+..|++.+... ...+..+.+.+.+|.+++..|++.+|+..+++.+
T Consensus 4 ~~~~lY~~a~~~~~~-g~y~~Ai~~f~~l~~~~-------------P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 4 TAEALYQKALEALQQ-GDYEEAIKLFEKLIDRY-------------PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFI 69 (203)
T ss_dssp -HHHHHHHHHHHHHC-T-HHHHHHHHHHHHHH--------------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHC-------------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 457899999999999 99999999999887432 2455677889999999999999999999999999
Q ss_pred HhCCCCCchhhHHHHHhHhhhhhhhHH-----hhccCChHHHHHHHHHHHhcCCCcHH-----------------HHHHH
Q psy13014 96 RSCPRSCSVSRAVFYANRSAALEKLAS-----YLSLEKPDQSILACSKAITLNPSYLK-----------------VYQRR 153 (229)
Q Consensus 96 ~~~p~~~~~~~~~~~~~lg~~~~~~~~-----~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~l 153 (229)
+..|++.. .+.+++.+|.+..++.. ....+...+|+..|+..+...|++.. --+..
T Consensus 70 ~~yP~~~~--~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~i 147 (203)
T PF13525_consen 70 KLYPNSPK--ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYI 147 (203)
T ss_dssp HH-TT-TT--HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCcc--hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998743 46788888888222221 12233456899999999999999832 13346
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccC
Q psy13014 154 ARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190 (229)
Q Consensus 154 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 190 (229)
|..|.+.|.+..|+..++.+++..|+.+..-..+..+
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l 184 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARL 184 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 8889999999999999999999999988654444433
No 118
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.19 E-value=9e-11 Score=76.58 Aligned_cols=97 Identities=32% Similarity=0.443 Sum_probs=89.1
Q ss_pred HHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhc
Q psy13014 109 FYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATK 188 (229)
Q Consensus 109 ~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 188 (229)
+++.+|.+ +...|++++|+..++++++..|.+..+++.+|.++...|++++|+..+++++...|.+...+..++
T Consensus 2 ~~~~~a~~------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 75 (100)
T cd00189 2 ALLNLGNL------YYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLG 75 (100)
T ss_pred HHHHHHHH------HHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHH
Confidence 46788999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHhhhhhccccccccc-ccC
Q psy13014 189 VSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 189 ~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
.++ ...++..+|...+..++ ..|
T Consensus 76 ~~~-~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 76 LAY-YKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHH-HHHHhHHHHHHHHHHHHccCC
Confidence 998 78888888888887776 554
No 119
>KOG0495|consensus
Probab=99.17 E-value=2.9e-10 Score=96.25 Aligned_cols=173 Identities=16% Similarity=0.129 Sum_probs=132.3
Q ss_pred hhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHH
Q psy13014 7 QQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSE 86 (229)
Q Consensus 7 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 86 (229)
.++++.+|++...++..-.+.+.. .+++.|...|.++. .......+|+.-+....-+++.++
T Consensus 608 ~~af~~~pnseeiwlaavKle~en-~e~eraR~llakar-----------------~~sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 608 DQAFEANPNSEEIWLAAVKLEFEN-DELERARDLLAKAR-----------------SISGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHHHhCCCcHHHHHHHHHHhhcc-ccHHHHHHHHHHHh-----------------ccCCcchhhHHHhHHHHHhhhHHH
Confidence 455566666666666655555555 56666666555544 334456677888888888899999
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHH
Q psy13014 87 SLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEA 166 (229)
Q Consensus 87 A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 166 (229)
|+..++++++.+|.. ..+|..+|.+ +.++++.+.|.+.|...++..|+.+..|..++.+-...|..-+|
T Consensus 670 A~rllEe~lk~fp~f-----~Kl~lmlGQi------~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rA 738 (913)
T KOG0495|consen 670 ALRLLEEALKSFPDF-----HKLWLMLGQI------EEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRA 738 (913)
T ss_pred HHHHHHHHHHhCCch-----HHHHHHHhHH------HHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhH
Confidence 999999999999988 8889999999 88889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 167 LADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 167 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
...++++.-.+|.+...|...-++. .+.+....|.....+++
T Consensus 739 R~ildrarlkNPk~~~lwle~Ir~E-lR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 739 RSILDRARLKNPKNALLWLESIRME-LRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHH-HHcCCHHHHHHHHHHHH
Confidence 9999999999999988888777665 55555444444444444
No 120
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.16 E-value=8e-10 Score=76.18 Aligned_cols=112 Identities=9% Similarity=0.093 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
+..++..|..+... |++++|...|++.+... ...+..+.+++.+|.++...|++++|+..|+.++.
T Consensus 2 ~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 2 EEAYYDAALLVLKA-GDYADAIQAFQAFLKKY-------------PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred cHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC-------------CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 45788999999999 99999999998887211 12233467899999999999999999999999999
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHH
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVY 150 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (229)
.+|++.. .+.++..+|.+ +..+|++++|+..+++++...|++..+.
T Consensus 68 ~~p~~~~--~~~~~~~~~~~------~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 68 KYPKSPK--APDALLKLGMS------LQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HCCCCCc--ccHHHHHHHHH------HHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 9887521 16789999999 9999999999999999999999987643
No 121
>KOG0543|consensus
Probab=99.16 E-value=1.5e-09 Score=87.46 Aligned_cols=144 Identities=17% Similarity=0.165 Sum_probs=115.3
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy13014 22 FSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRS 101 (229)
Q Consensus 22 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 101 (229)
-.|..++.. |++..|...|++++..+.+....-. ........-...++.+++.++.+++.|..|+...++++.++|+|
T Consensus 213 e~Gn~~fK~-gk~~~A~~~Yerav~~l~~~~~~~~-ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 213 ERGNVLFKE-GKFKLAKKRYERAVSFLEYRRSFDE-EEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HhhhHHHhh-chHHHHHHHHHHHHHHhhccccCCH-HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 356788888 9999999999988865442221110 00011222344678899999999999999999999999999999
Q ss_pred CchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHH-HHHHHHHHHhCC
Q psy13014 102 CSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEA-LADYQKILELDP 178 (229)
Q Consensus 102 ~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A-~~~~~~al~~~p 178 (229)
.-+++.+|.+ +..+|+|+.|+..|+++++++|.|-.+...+..+-.+...+.+. .+.|.+.+..-+
T Consensus 291 -----~KALyRrG~A------~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 291 -----VKALYRRGQA------LLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred -----hhHHHHHHHH------HHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999 99999999999999999999999999999999998888777654 777777765544
No 122
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.15 E-value=2.6e-10 Score=71.90 Aligned_cols=68 Identities=29% Similarity=0.482 Sum_probs=64.1
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccC
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 190 (229)
+...+++++|+.++++++.++|+++..+..+|.++..+|++++|+..|+++++.+|+++.+....+.+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 88999999999999999999999999999999999999999999999999999999999887765543
No 123
>KOG1127|consensus
Probab=99.14 E-value=3.9e-10 Score=99.20 Aligned_cols=162 Identities=14% Similarity=0.055 Sum_probs=140.2
Q ss_pred ccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccC
Q psy13014 4 LPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQ 83 (229)
Q Consensus 4 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 83 (229)
-||++|.++||++..+.-..+..+... .+++.|....-... + ..........|...|..+...++
T Consensus 513 kCf~KAFeLDatdaeaaaa~adtyae~-~~we~a~~I~l~~~---q-----------ka~a~~~k~nW~~rG~yyLea~n 577 (1238)
T KOG1127|consen 513 KCFDKAFELDATDAEAAAASADTYAEE-STWEEAFEICLRAA---Q-----------KAPAFACKENWVQRGPYYLEAHN 577 (1238)
T ss_pred HHHHHHhcCCchhhhhHHHHHHHhhcc-ccHHHHHHHHHHHh---h-----------hchHHHHHhhhhhccccccCccc
Confidence 379999999999999999999999999 89988877532211 1 01112334556679999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccH
Q psy13014 84 WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKL 163 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 163 (229)
+.+|+..|+.+++.+|.+ ..+|..+|.+ |...|++.-|++.|.++..++|.+.-+-+-.|.+...+|+|
T Consensus 578 ~h~aV~~fQsALR~dPkD-----~n~W~gLGeA------Y~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 578 LHGAVCEFQSALRTDPKD-----YNLWLGLGEA------YPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred hhhHHHHHHHHhcCCchh-----HHHHHHHHHH------HHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhH
Confidence 999999999999999999 9999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 164 DEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 164 ~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.+|+..+...+............++.++
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ 674 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESV 674 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999988777777777777665
No 124
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.13 E-value=4.2e-09 Score=73.89 Aligned_cols=113 Identities=19% Similarity=0.243 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
.+..++..|...++.|+|.+|++.|+......|...- ...+...+|.+ |+..+++++|+..+++-|+++|.+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y--a~qAqL~l~ya------yy~~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY--AEQAQLDLAYA------YYKQGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc--cHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhCCCC
Confidence 4567899999999999999999999999999986522 26788999999 999999999999999999999988
Q ss_pred H---HHHHHHHHHHHhccc---------------HHHHHHHHHHHHHhCCCcHHHHHHh
Q psy13014 147 L---KVYQRRARLYQQSDK---------------LDEALADYQKILELDPNNRDAYVAT 187 (229)
Q Consensus 147 ~---~~~~~la~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~~~~l 187 (229)
+ .+++..|.+++.... ..+|...|++.+...|+...+-...
T Consensus 81 p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~ 139 (142)
T PF13512_consen 81 PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADAR 139 (142)
T ss_pred CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence 5 479999999999877 8999999999999999988765443
No 125
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.13 E-value=1.7e-10 Score=84.94 Aligned_cols=123 Identities=15% Similarity=0.102 Sum_probs=96.8
Q ss_pred cCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc---HHHHHHHHHHHH
Q psy13014 82 NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY---LKVYQRRARLYQ 158 (229)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 158 (229)
..|..+...+...++..+.. ....+++.+|.+ +...|++++|+..|++++.+.|+. +.++.++|.++.
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~g~~------~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~ 83 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGE---KEAFTYYRDGMS------AQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT 83 (168)
T ss_pred cccccchhhhhHhccCCchh---HHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence 34555555554444443332 247889999999 999999999999999999987763 458999999999
Q ss_pred hcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchH-------HHhhhh-------hccccccccc-ccCCC
Q psy13014 159 QSDKLDEALADYQKILELDPNNRDAYVATKVSPDL-------KLKEKN-------GATKLSPDVF-LHPGQ 214 (229)
Q Consensus 159 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-------~~~~~~-------~a~~~~~~~~-~~p~~ 214 (229)
..|++++|+..+++++.++|.....+.+++.++ . .++++. +++..+.+++ .+|.+
T Consensus 84 ~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~-~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 84 SNGEHTKALEYYFQALERNPFLPQALNNMAVIC-HYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-HHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999999888 4 444444 5666666777 77744
No 126
>KOG1156|consensus
Probab=99.12 E-value=1.1e-09 Score=92.60 Aligned_cols=160 Identities=18% Similarity=0.196 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
.++|..+.-.+.. ++|.......+..+ ...|+.++.+...|..+..+|+-++|..+...+++.
T Consensus 8 ~~lF~~~lk~yE~-kQYkkgLK~~~~iL----------------~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~ 70 (700)
T KOG1156|consen 8 NALFRRALKCYET-KQYKKGLKLIKQIL----------------KKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN 70 (700)
T ss_pred HHHHHHHHHHHHH-HHHHhHHHHHHHHH----------------HhCCccchhHHhccchhhcccchHHHHHHHHHHhcc
Confidence 4566666667777 77877777666555 577889999999999999999999999999999999
Q ss_pred CCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 98 CPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 98 ~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
++.+ ..+|..+|.+ +....+|++||.+|..|+.++|+|...|.-++....++++++-....-.+.+++.
T Consensus 71 d~~S-----~vCwHv~gl~------~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~ 139 (700)
T KOG1156|consen 71 DLKS-----HVCWHVLGLL------QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR 139 (700)
T ss_pred Cccc-----chhHHHHHHH------HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 9999 9999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHhccCchHHHhhhhhcccccc
Q psy13014 178 PNNRDAYVATKVSPDLKLKEKNGATKLSP 206 (229)
Q Consensus 178 p~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 206 (229)
|.....|..+++.. --.+++..|....+
T Consensus 140 ~~~ra~w~~~Avs~-~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 140 PSQRASWIGFAVAQ-HLLGEYKMALEILE 167 (700)
T ss_pred hhhHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999887 55666555554443
No 127
>KOG0551|consensus
Probab=99.12 E-value=1e-09 Score=86.20 Aligned_cols=118 Identities=28% Similarity=0.432 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
...+.+.-+...|+.|++.++|..|+.+|.++|+....+ .+..+.+|.|+|.| .+.+|+|..|+..+.+++.+
T Consensus 76 ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D-~dlnavLY~NRAAa------~~~l~NyRs~l~Dcs~al~~ 148 (390)
T KOG0551|consen 76 EPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCAD-PDLNAVLYTNRAAA------QLYLGNYRSALNDCSAALKL 148 (390)
T ss_pred ChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCC-ccHHHHHHhhHHHH------HHHHHHHHHHHHHHHHHHhc
Confidence 445788899999999999999999999999999986543 22347899999999 99999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHh
Q psy13014 143 NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVAT 187 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 187 (229)
+|.+.+++++-|.|+..++++++|+.+++..++++-+...+....
T Consensus 149 ~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l~ 193 (390)
T KOG0551|consen 149 KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIELR 193 (390)
T ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999988876665554443
No 128
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.12 E-value=2.1e-09 Score=82.85 Aligned_cols=112 Identities=13% Similarity=0.176 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc---
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY--- 146 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--- 146 (229)
-.+..|..++..|+|..|...|...++..|++.. .+.++++||.+ ++.+|+|+.|...|..+++-.|++
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~--~~nA~yWLGe~------~y~qg~y~~Aa~~f~~~~k~~P~s~KA 214 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY--TPNAYYWLGES------LYAQGDYEDAAYIFARVVKDYPKSPKA 214 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc--cchhHHHHHHH------HHhcccchHHHHHHHHHHHhCCCCCCC
Confidence 3899999999999999999999999999998632 38899999999 999999999999999999998876
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhcc
Q psy13014 147 LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKV 189 (229)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 189 (229)
+++++.+|.+...+|+.++|...|+++++..|+...+......
T Consensus 215 pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~ 257 (262)
T COG1729 215 PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA 257 (262)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 5789999999999999999999999999999999887665443
No 129
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.11 E-value=1.4e-10 Score=72.08 Aligned_cols=66 Identities=24% Similarity=0.255 Sum_probs=60.7
Q ss_pred hccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhcc
Q psy13014 124 LSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKV 189 (229)
Q Consensus 124 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 189 (229)
+..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 568999999999999999999999999999999999999999999999999999999888776653
No 130
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.11 E-value=1.1e-08 Score=79.74 Aligned_cols=164 Identities=13% Similarity=0.028 Sum_probs=125.9
Q ss_pred chHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy13014 15 SFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEA 94 (229)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 94 (229)
..+..+|..|...+.. |++++|+..|++.+... ...+....+.+.+|.++++.+++++|+..+++.
T Consensus 30 ~~~~~~Y~~A~~~~~~-g~y~~Ai~~f~~l~~~y-------------P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~f 95 (243)
T PRK10866 30 NPPSEIYATAQQKLQD-GNWKQAITQLEALDNRY-------------PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRF 95 (243)
T ss_pred CCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-------------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4567788999999998 99999999998887322 233455567799999999999999999999999
Q ss_pred HHhCCCCCchhhHHHHHhHhhhhhhhHHhhccC---------------C---hHHHHHHHHHHHhcCCCcHH---H----
Q psy13014 95 LRSCPRSCSVSRAVFYANRSAALEKLASYLSLE---------------K---PDQSILACSKAITLNPSYLK---V---- 149 (229)
Q Consensus 95 l~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~---------------~---~~~A~~~~~~al~~~p~~~~---~---- 149 (229)
++.+|++.. .+.+++.+|.+ +..++ + ..+|+..+++.++..|++.- +
T Consensus 96 i~~~P~~~~--~~~a~Y~~g~~------~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl 167 (243)
T PRK10866 96 IRLNPTHPN--IDYVLYMRGLT------NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRL 167 (243)
T ss_pred HHhCcCCCc--hHHHHHHHHHh------hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHH
Confidence 999998743 37778888888 54443 1 35788999999999998832 1
Q ss_pred ----------HHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH---HHHHhccCchHHHhhhhhc
Q psy13014 150 ----------YQRRARLYQQSDKLDEALADYQKILELDPNNRD---AYVATKVSPDLKLKEKNGA 201 (229)
Q Consensus 150 ----------~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~~~~a 201 (229)
-+..|..|.+.|.|.-|+.-++.+++..|+.+. +...+...+ ..++...+|
T Consensus 168 ~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay-~~lg~~~~a 231 (243)
T PRK10866 168 VFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAY-RQLQLNAQA 231 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH-HHcCChHHH
Confidence 234577789999999999999999999998665 444444444 444443333
No 131
>PRK11906 transcriptional regulator; Provisional
Probab=99.10 E-value=4e-09 Score=87.00 Aligned_cols=140 Identities=13% Similarity=0.034 Sum_probs=75.7
Q ss_pred chhhc---ccCCchHHHHHHHHHHHHHhh--hh------hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy13014 6 YQQEL---SKNPSFLYTIYFSCFILFILF--SE------IRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDE 74 (229)
Q Consensus 6 ~~~~l---~~~p~~~~~~~~~~~~~~~~~--~~------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (229)
|.+++ +++|++..++..++++++... |. ..++....++++ ..++.++.++..+
T Consensus 281 f~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv----------------eld~~Da~a~~~~ 344 (458)
T PRK11906 281 FDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS----------------DITTVDGKILAIM 344 (458)
T ss_pred HHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH----------------hcCCCCHHHHHHH
Confidence 67888 899999999999998887651 11 111111122222 3445555555555
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q psy13014 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRA 154 (229)
Q Consensus 75 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 154 (229)
|.+....++++.|+..|++|+.++|+. +.+|+..|.+ ....|+.++|+++++++++++|....+-...-
T Consensus 345 g~~~~~~~~~~~a~~~f~rA~~L~Pn~-----A~~~~~~~~~------~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~ 413 (458)
T PRK11906 345 GLITGLSGQAKVSHILFEQAKIHSTDI-----ASLYYYRALV------HFHNEKIEEARICIDKSLQLEPRRRKAVVIKE 413 (458)
T ss_pred HHHHHhhcchhhHHHHHHHHhhcCCcc-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHhccCchhhHHHHHHH
Confidence 555555555555555555555555555 5555555555 55555555555555555555555444433333
Q ss_pred HH-HHhcccHHHHHHHHHH
Q psy13014 155 RL-YQQSDKLDEALADYQK 172 (229)
Q Consensus 155 ~~-~~~~~~~~~A~~~~~~ 172 (229)
++ .+-....+.|+..|-+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 414 CVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHcCCchhhhHHHHhh
Confidence 33 3333444455554433
No 132
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.09 E-value=4.3e-09 Score=72.52 Aligned_cols=99 Identities=17% Similarity=0.083 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC---
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS--- 145 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--- 145 (229)
.+++..|.++-..|+.++|+..|++++...... ..+..++..+|.+ +..+|++++|+..+++++...|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~--~~~~~a~i~last------lr~LG~~deA~~~L~~~~~~~p~~~~ 73 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSG--ADRRRALIQLAST------LRNLGRYDEALALLEEALEEFPDDEL 73 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--hHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHCCCccc
Confidence 468899999999999999999999999975443 2356789999999 99999999999999999999888
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 146 YLKVYQRRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
+......++.++...|+.++|+..+-.++.
T Consensus 74 ~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 74 NAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778888899999999999999999988775
No 133
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.3e-09 Score=84.97 Aligned_cols=117 Identities=20% Similarity=0.206 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc--
Q psy13014 84 WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSD-- 161 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-- 161 (229)
.++-+.-.+..+..+|++ +.-|..||.+ |+.+|++..|...|.+|+++.|+++..+..+|.++....
T Consensus 138 ~~~l~a~Le~~L~~nP~d-----~egW~~Lg~~------ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~ 206 (287)
T COG4235 138 MEALIARLETHLQQNPGD-----AEGWDLLGRA------YMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQ 206 (287)
T ss_pred HHHHHHHHHHHHHhCCCC-----chhHHHHHHH------HHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Confidence 567777888899999999 9999999999 999999999999999999999999999999999988654
Q ss_pred -cHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccC
Q psy13014 162 -KLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 162 -~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
...++...+++++.+||++..+...++..+ ...+++.+|...++.++ ..|
T Consensus 207 ~~ta~a~~ll~~al~~D~~~iral~lLA~~a-fe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 207 QMTAKARALLRQALALDPANIRALSLLAFAA-FEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred cccHHHHHHHHHHHhcCCccHHHHHHHHHHH-HHcccHHHHHHHHHHHHhcCC
Confidence 467899999999999999999999999998 88899999999999999 666
No 134
>KOG4642|consensus
Probab=99.06 E-value=5.4e-10 Score=83.98 Aligned_cols=101 Identities=27% Similarity=0.403 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
..+.-+...|+.++..+.|..|+.+|.++|.++|.. +..|.+.+.| ++++++++.+...+.+++++.|+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~-----~~Y~tnralc------hlk~~~~~~v~~dcrralql~~N 76 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTV-----ASYYTNRALC------HLKLKHWEPVEEDCRRALQLDPN 76 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCc-----chhhhhHHHH------HHHhhhhhhhhhhHHHHHhcChH
Confidence 344556788999999999999999999999999998 9999999999 99999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 146 YLKVYQRRARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
.+.+++.+|.++.....|++||..+.++.++.
T Consensus 77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999997653
No 135
>PRK11906 transcriptional regulator; Provisional
Probab=99.05 E-value=7.8e-09 Score=85.31 Aligned_cols=141 Identities=15% Similarity=0.019 Sum_probs=115.8
Q ss_pred HHHHHHHHHHh--hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHc---------cCHHHHH
Q psy13014 20 IYFSCFILFIL--FSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRL---------NQWSESL 88 (229)
Q Consensus 20 ~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---------~~~~~A~ 88 (229)
.+..|...... ......|...|.+++.. ...+|..+.++..++.+++.. ..-.+|.
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~-------------~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~ 324 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNK-------------SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKAL 324 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhc-------------ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 36666655433 12345555666666521 246678888888888888764 3457888
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHH
Q psy13014 89 AKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALA 168 (229)
Q Consensus 89 ~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 168 (229)
+..+++++++|.+ +.++..+|.+ ....++++.|+..|++|+.++|+.+.+|+..|.+....|+.++|+.
T Consensus 325 ~~A~rAveld~~D-----a~a~~~~g~~------~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 325 ELLDYVSDITTVD-----GKILAIMGLI------TGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred HHHHHHHhcCCCC-----HHHHHHHHHH------HHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999 9999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHH
Q psy13014 169 DYQKILELDPNNRDAY 184 (229)
Q Consensus 169 ~~~~al~~~p~~~~~~ 184 (229)
.++++++++|.-..+-
T Consensus 394 ~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 394 CIDKSLQLEPRRRKAV 409 (458)
T ss_pred HHHHHhccCchhhHHH
Confidence 9999999999765543
No 136
>PRK15331 chaperone protein SicA; Provisional
Probab=99.05 E-value=4.1e-09 Score=75.56 Aligned_cols=117 Identities=6% Similarity=-0.086 Sum_probs=102.3
Q ss_pred CccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc
Q psy13014 3 PLPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN 82 (229)
Q Consensus 3 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 82 (229)
+.+......+.++.....|..|.-++.. |++++|...|.-.. .-++.++..+..+|.++..++
T Consensus 23 G~tlk~l~gis~~~le~iY~~Ay~~y~~-Gk~~eA~~~F~~L~----------------~~d~~n~~Y~~GLaa~~Q~~k 85 (165)
T PRK15331 23 GATLKDVHGIPQDMMDGLYAHAYEFYNQ-GRLDEAETFFRFLC----------------IYDFYNPDYTMGLAAVCQLKK 85 (165)
T ss_pred CCCHHHHhCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH----------------HhCcCcHHHHHHHHHHHHHHH
Confidence 3455566778889999999999999999 99999999996544 355777889999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHH
Q psy13014 83 QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLK 148 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (229)
+|++|+..|-.+..+++++ +...+..|.| ++.+|+.+.|...|..++. .|.+..
T Consensus 86 ~y~~Ai~~Y~~A~~l~~~d-----p~p~f~agqC------~l~l~~~~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 86 QFQKACDLYAVAFTLLKND-----YRPVFFTGQC------QLLMRKAAKARQCFELVNE-RTEDES 139 (165)
T ss_pred HHHHHHHHHHHHHHcccCC-----CCccchHHHH------HHHhCCHHHHHHHHHHHHh-CcchHH
Confidence 9999999999999999988 8889999999 9999999999999999998 455433
No 137
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.04 E-value=1.1e-09 Score=68.00 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=62.1
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy13014 78 LFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARL 156 (229)
Q Consensus 78 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 156 (229)
++..|++++|+..|++++..+|++ ..++..+|.| ++..|++++|...+++++..+|+++..+..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~------~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN-----PEARLLLAQC------YLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS-----HHHHHHHHHH------HHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 357899999999999999999999 9999999999 9999999999999999999999998888777653
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.04 E-value=7.1e-09 Score=85.53 Aligned_cols=126 Identities=17% Similarity=0.194 Sum_probs=96.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q psy13014 32 SEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYA 111 (229)
Q Consensus 32 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 111 (229)
++++.|...+++.. .. ++.....++.++...++-.+|+..+++++...|.+ ..++.
T Consensus 183 ~~~~~ai~lle~L~----------------~~---~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d-----~~LL~ 238 (395)
T PF09295_consen 183 QRYDEAIELLEKLR----------------ER---DPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQD-----SELLN 238 (395)
T ss_pred ccHHHHHHHHHHHH----------------hc---CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC-----HHHHH
Confidence 56666666666654 22 24456678888888888889999999999888888 88888
Q ss_pred hHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHh
Q psy13014 112 NRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVAT 187 (229)
Q Consensus 112 ~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 187 (229)
..+.. +...++++.|+...+++++..|++..+|+.+|.+|..+|+++.|+..+..+--..+.+.......
T Consensus 239 ~Qa~f------Ll~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~~~~~ 308 (395)
T PF09295_consen 239 LQAEF------LLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDKYKLKRP 308 (395)
T ss_pred HHHHH------HHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccchhhhcC
Confidence 88888 88888889999999999999998888999999999999999988877765544433443343333
No 139
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.03 E-value=7.8e-10 Score=71.76 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=68.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q psy13014 32 SEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYA 111 (229)
Q Consensus 32 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 111 (229)
|+++.|+..+++.+...+ ..+ +...++.+|.++++.|+|++|+..+++ ...+|.+ ...++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~-------------~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-----~~~~~ 62 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDP-------------TNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-----PDIHY 62 (84)
T ss_dssp T-HHHHHHHHHHHHHHHC-------------GTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-----HHHHH
T ss_pred ccHHHHHHHHHHHHHHCC-------------CCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-----HHHHH
Confidence 789999999998883211 122 677888899999999999999999999 7788877 88888
Q ss_pred hHhhhhhhhHHhhccCChHHHHHHHHHH
Q psy13014 112 NRSAALEKLASYLSLEKPDQSILACSKA 139 (229)
Q Consensus 112 ~lg~~~~~~~~~~~~~~~~~A~~~~~~a 139 (229)
.+|.| ++.+|++++|+.+++++
T Consensus 63 l~a~~------~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 63 LLARC------LLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHH------HHHTT-HHHHHHHHHHH
T ss_pred HHHHH------HHHhCCHHHHHHHHhcC
Confidence 89999 99999999999999875
No 140
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.03 E-value=3.2e-09 Score=91.04 Aligned_cols=136 Identities=18% Similarity=0.148 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccC--------ChHHHHHH
Q psy13014 67 TAISLKDEGNALFRLNQ---WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE--------KPDQSILA 135 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~--------~~~~A~~~ 135 (229)
.+..++..|..+...+. ..+|+.+|+++++++|++ +.++..++.+ +.... +...+.+.
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~-----a~a~A~la~~------~~~~~~~~~~~~~~l~~a~~~ 406 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF-----TYAQAEKALA------DIVRHSQQPLDEKQLAALSTE 406 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc-----HHHHHHHHHH------HHHHHhcCCccHHHHHHHHHH
Confidence 45566777877766544 889999999999999999 9999988887 54432 23455666
Q ss_pred HHHHHhc--CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccC
Q psy13014 136 CSKAITL--NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 136 ~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
..+++.+ +|.++.++.-+|..+...|++++|...+++++.++|+ ..++..+|.++ ...|+..+|...+.+++ ++|
T Consensus 407 ~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~-~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 407 LDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVY-ELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCC
Confidence 6676664 7788889999999999999999999999999999995 78999999999 89999999999999999 999
Q ss_pred CCc
Q psy13014 213 GQP 215 (229)
Q Consensus 213 ~~~ 215 (229)
.++
T Consensus 485 ~~p 487 (517)
T PRK10153 485 GEN 487 (517)
T ss_pred CCc
Confidence 654
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.02 E-value=1.1e-08 Score=73.51 Aligned_cols=134 Identities=19% Similarity=0.089 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
+.....+.........++...+...++..+..+|+.. ....+.+.+|.+ ++..|++++|+..|++++...|+
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~--ya~~A~l~lA~~------~~~~g~~~~A~~~l~~~~~~~~d 80 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP--YAALAALQLAKA------AYEQGDYDEAKAALEKALANAPD 80 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh--HHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHhhCCC
Confidence 3344555556666679999999999999999988762 225678889999 99999999999999999998866
Q ss_pred c---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 146 Y---LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 146 ~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
. ..+.+++|.++...|++++|+..++. +.-.+-.+.++..+|.++ ...++..+|...|.+++
T Consensus 81 ~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~-~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 81 PELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIY-LAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHH-HHCCCHHHHHHHHHHhC
Confidence 5 45788999999999999999999966 444555667888999999 88999999998887653
No 142
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.02 E-value=1e-09 Score=87.51 Aligned_cols=168 Identities=17% Similarity=0.100 Sum_probs=111.8
Q ss_pred chHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy13014 15 SFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEA 94 (229)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 94 (229)
.++......|.++... |++++|...+.+. .+.+.....-.++..+++++.|.+.++..
T Consensus 100 ~~~~~~~~~A~i~~~~-~~~~~AL~~l~~~---------------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 100 SNEIVQLLAATILFHE-GDYEEALKLLHKG---------------------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHHHHHHCCC-CHHHHHHCCCTTT---------------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHc-CCHHHHHHHHHcc---------------------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455566666666666 7777777655332 23344555667888899999999998888
Q ss_pred HHhCCCCCchhhHHHHHhHhhhhhhhHHhhccC--ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHH
Q psy13014 95 LRSCPRSCSVSRAVFYANRSAALEKLASYLSLE--KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQK 172 (229)
Q Consensus 95 l~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (229)
-+.+++. .......|.+ .+..| .+.+|...|++.....|.++..+..+|.++..+|+|++|.+.+.+
T Consensus 158 ~~~~eD~-----~l~qLa~awv------~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 158 QQIDEDS-----ILTQLAEAWV------NLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp HCCSCCH-----HHHHHHHHHH------HHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HhcCCcH-----HHHHHHHHHH------HHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 7776665 3333333334 33333 688999999998887788888888899999999999999999999
Q ss_pred HHHhCCCcHHHHHHhccCchHHHhhhhh-ccccccccc-ccCCCcc
Q psy13014 173 ILELDPNNRDAYVATKVSPDLKLKEKNG-ATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 173 al~~~p~~~~~~~~l~~~~~~~~~~~~~-a~~~~~~~~-~~p~~~~ 216 (229)
++..+|.+++...++..+. ..+++-.+ +.+.+..+. .+|+++.
T Consensus 227 al~~~~~~~d~LaNliv~~-~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 227 ALEKDPNDPDTLANLIVCS-LHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HCCC-CCHHHHHHHHHHHH-HHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHhccCCHHHHHHHHHHH-HHhCCChhHHHHHHHHHHHhCCCChH
Confidence 9999999999888888776 55555423 333333333 5565443
No 143
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.00 E-value=2.8e-09 Score=67.13 Aligned_cols=70 Identities=17% Similarity=0.290 Sum_probs=64.9
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q psy13014 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRA 154 (229)
Q Consensus 75 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 154 (229)
..++.+.+++++|+.++++++.++|.+ +..+..+|.+ +..+|++++|++.++++++..|+++.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~~a~~------~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDD-----PELWLQRARC------LFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCccc-----chhhHHHHHH------HHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 567899999999999999999999999 9999999999 99999999999999999999999988766554
Q ss_pred H
Q psy13014 155 R 155 (229)
Q Consensus 155 ~ 155 (229)
.
T Consensus 71 ~ 71 (73)
T PF13371_consen 71 M 71 (73)
T ss_pred h
Confidence 3
No 144
>KOG0376|consensus
Probab=98.99 E-value=7.8e-10 Score=90.81 Aligned_cols=111 Identities=30% Similarity=0.471 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHH
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKV 149 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (229)
.+-..+...+..+.|+.|+..|.++++++|++ +.++.+++.+ +.+.+++..|+..+.+|++.+|...++
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnc-----a~~~anRa~a------~lK~e~~~~Al~Da~kaie~dP~~~K~ 74 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNC-----AIYFANRALA------HLKVESFGGALHDALKAIELDPTYIKA 74 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcc-----eeeechhhhh------heeechhhhHHHHHHhhhhcCchhhhe
Confidence 34567888889999999999999999999999 9999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 150 YQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 150 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
|++.|.+...++++.+|...|++...+.|+++.+...+..|.
T Consensus 75 Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 75 YVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred eeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888775
No 145
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.99 E-value=2.6e-09 Score=88.02 Aligned_cols=65 Identities=17% Similarity=0.093 Sum_probs=62.7
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKV---YQRRARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
+..|+++|.+ ++.+|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 75 a~a~~NLG~A------L~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 75 AEDAVNLGLS------LFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 9999999999 999999999999999999999999854 9999999999999999999999999983
No 146
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.99 E-value=1.2e-08 Score=80.18 Aligned_cols=108 Identities=12% Similarity=0.032 Sum_probs=92.4
Q ss_pred HHHHHHHHHHH-HHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHH---HHHHHHHHHHHHHHccCHHHHHHHHH
Q psy13014 17 LYTIYFSCFIL-FILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQ---TAISLKDEGNALFRLNQWSESLAKYN 92 (229)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~A~~~~~ 92 (229)
....|..+..+ +.. |++++|+..|++++ ...|+ .+.+++.+|.+++..|++++|+..|.
T Consensus 142 e~~~Y~~A~~l~~~~-~~y~~Ai~af~~fl----------------~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~ 204 (263)
T PRK10803 142 ANTDYNAAIALVQDK-SRQDDAIVAFQNFV----------------KKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFA 204 (263)
T ss_pred HHHHHHHHHHHHHhc-CCHHHHHHHHHHHH----------------HHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46677787776 445 89999999998888 34443 46899999999999999999999999
Q ss_pred HHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHH
Q psy13014 93 EALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKV 149 (229)
Q Consensus 93 ~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (229)
+++...|++.. .+++++.+|.+ +..+|++++|+..|+++++..|++..+
T Consensus 205 ~vv~~yP~s~~--~~dAl~klg~~------~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 205 SVVKNYPKSPK--AADAMFKVGVI------MQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHCCCCcc--hhHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 99999987532 38889999999 999999999999999999999998653
No 147
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.98 E-value=2.6e-09 Score=79.41 Aligned_cols=109 Identities=17% Similarity=0.132 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
.+.+.+..++..|..|-..|-+.-|.-.|.+++.+.|+. +.+++.+|.. +...|+|+.|.+.|+.++++
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m-----~~vfNyLG~Y------l~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM-----PEVFNYLGIY------LTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc-----HHHHHHHHHH------HHhcccchHHHHHhhhHhcc
Confidence 456788899999999999999999999999999999999 9999999999 99999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH
Q psy13014 143 NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 182 (229)
+|...-++.+.|..+...|++.-|.+.+.+-.+-||+||-
T Consensus 129 Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 129 DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 9999999999999999999999999999999999999985
No 148
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.98 E-value=2.1e-08 Score=76.17 Aligned_cols=112 Identities=16% Similarity=0.187 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
.++..++..|..++..|+|.+|+..|++.+...|.+.- ...+.+.+|.+ ++..|+++.|+..+++.++..|+
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~--a~~A~l~la~a------~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY--APQAQLMLAYA------YYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT--HHHHHHHHHHH------HHHTT-HHHHHHHHHHHHHH-TT
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH--HHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHCCC
Confidence 45678999999999999999999999999999997632 37789999999 99999999999999999999998
Q ss_pred cH---HHHHHHHHHHHhcc-----------cHHHHHHHHHHHHHhCCCcHHHHH
Q psy13014 146 YL---KVYQRRARLYQQSD-----------KLDEALADYQKILELDPNNRDAYV 185 (229)
Q Consensus 146 ~~---~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~ 185 (229)
++ .+++.+|.++.... ...+|+..|+..+...|+.+.+..
T Consensus 75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~ 128 (203)
T PF13525_consen 75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEE 128 (203)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHH
T ss_pred CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHH
Confidence 74 58999999976653 356899999999999999876543
No 149
>KOG0545|consensus
Probab=98.96 E-value=1.4e-08 Score=76.91 Aligned_cols=117 Identities=30% Similarity=0.386 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCCc-----hhhHHHHHhHhhhhhhhHHhhccCC
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRS--------CPRSCS-----VSRAVFYANRSAALEKLASYLSLEK 128 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~-----~~~~~~~~~lg~~~~~~~~~~~~~~ 128 (229)
........++...|+-++..|+|.+|...|..|+.. .|.... .....++.|.+.| ++..|+
T Consensus 172 deKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC------~L~~~e 245 (329)
T KOG0545|consen 172 DEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQC------LLKKEE 245 (329)
T ss_pred hHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHH------HhhHHH
Confidence 344556678999999999999999999999998754 232210 1235678999999 999999
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHH
Q psy13014 129 PDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184 (229)
Q Consensus 129 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 184 (229)
|-++++++...+...|.+.++++..|.++...-+.++|...|.++++++|.-..+.
T Consensus 246 ~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 246 YYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 99999999999999999999999999999999999999999999999999876543
No 150
>KOG4555|consensus
Probab=98.95 E-value=4.1e-08 Score=67.36 Aligned_cols=106 Identities=22% Similarity=0.269 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
+....+-..|......|+.+.|++.|.+++.+.|.. +.+|++++.+ +.-+|+.++|+..+++++++..+
T Consensus 41 e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r-----aSayNNRAQa------~RLq~~~e~ALdDLn~AleLag~ 109 (175)
T KOG4555|consen 41 KASRELELKAIALAEAGDLDGALELFGQALCLAPER-----ASAYNNRAQA------LRLQGDDEEALDDLNKALELAGD 109 (175)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc-----hHhhccHHHH------HHHcCChHHHHHHHHHHHHhcCc
Confidence 344566778899999999999999999999999998 9999999999 99999999999999999999765
Q ss_pred cHH----HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH
Q psy13014 146 YLK----VYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182 (229)
Q Consensus 146 ~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 182 (229)
... ++...|.+|...|+-+.|...|+.+-++...+..
T Consensus 110 ~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 110 QTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred cchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHH
Confidence 543 6888999999999999999999999988765543
No 151
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.93 E-value=3.9e-08 Score=76.59 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
..+..++..|..++..|+|++|+..|++++...|.. .....+.+++|.+ +++.+++++|+..+++.++..|+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s--~~a~~a~l~la~a------yy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG--PYSQQVQLDLIYA------YYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHH------HHhcCCHHHHHHHHHHHHHhCcC
Confidence 456678899999999999999999999999999987 2234456899999 99999999999999999999988
Q ss_pred c---HHHHHHHHHHHHhcc------------------cHHHHHHHHHHHHHhCCCcHHHH
Q psy13014 146 Y---LKVYQRRARLYQQSD------------------KLDEALADYQKILELDPNNRDAY 184 (229)
Q Consensus 146 ~---~~~~~~la~~~~~~~------------------~~~~A~~~~~~al~~~p~~~~~~ 184 (229)
+ +.+++.+|.++...+ ...+|+..|++.++..|+..-+-
T Consensus 102 ~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~ 161 (243)
T PRK10866 102 HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT 161 (243)
T ss_pred CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH
Confidence 7 457999998875543 24578999999999999876543
No 152
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.93 E-value=2.2e-08 Score=79.93 Aligned_cols=142 Identities=11% Similarity=0.070 Sum_probs=110.9
Q ss_pred chHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc--CHHHHHHHHH
Q psy13014 15 SFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN--QWSESLAKYN 92 (229)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~ 92 (229)
++.+.......++..+ ++.+.|...+++.. ....+..-+....+.+.+..| .+.+|...|+
T Consensus 129 ~~lE~~al~Vqi~L~~-~R~dlA~k~l~~~~----------------~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~ 191 (290)
T PF04733_consen 129 GSLELLALAVQILLKM-NRPDLAEKELKNMQ----------------QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFE 191 (290)
T ss_dssp TCHHHHHHHHHHHHHT-T-HHHHHHHHHHHH----------------CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred CcccHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 5678888888899999 99999988886654 222233333344444444444 6999999999
Q ss_pred HHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccH-HHHHHHHH
Q psy13014 93 EALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKL-DEALADYQ 171 (229)
Q Consensus 93 ~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~ 171 (229)
+.....+.+ +.+...++.| ++.+|+|++|...+.+++..+|+++.++.++..+...+|+. +.+.+.+.
T Consensus 192 El~~~~~~t-----~~~lng~A~~------~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 192 ELSDKFGST-----PKLLNGLAVC------HLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp HHHCCS--S-----HHHHHHHHHH------HHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHhccCCC-----HHHHHHHHHH------HHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 988877777 8999999999 99999999999999999999999999999999999999998 66778888
Q ss_pred HHHHhCCCcHHHH
Q psy13014 172 KILELDPNNRDAY 184 (229)
Q Consensus 172 ~al~~~p~~~~~~ 184 (229)
+....+|+++-..
T Consensus 261 qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 261 QLKQSNPNHPLVK 273 (290)
T ss_dssp HCHHHTTTSHHHH
T ss_pred HHHHhCCCChHHH
Confidence 8888999988654
No 153
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.91 E-value=2.7e-08 Score=72.11 Aligned_cols=103 Identities=20% Similarity=0.227 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhc----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy13014 84 WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS----LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ 159 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 159 (229)
|+.|.+.++.....+|.+ ++.+++-|.++..++.+.. ...+++|+.-|++||.++|+...+++.+|.+|..
T Consensus 7 FE~ark~aea~y~~nP~D-----adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLD-----ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHh-----HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 678999999999999999 9999999999665554311 2357889999999999999999999999999987
Q ss_pred ccc-----------HHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 160 SDK-----------LDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 160 ~~~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.+. |++|..+|++|+..+|++...+..|....
T Consensus 82 ~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 82 LAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 653 89999999999999999998888777553
No 154
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.88 E-value=6.5e-08 Score=77.24 Aligned_cols=174 Identities=14% Similarity=0.155 Sum_probs=117.3
Q ss_pred HHHH-HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy13014 20 IYFS-CFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSC 98 (229)
Q Consensus 20 ~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 98 (229)
.|.. |..+... +++.+|...|.++...... ......-+..+...+.++.+. ++++|+.+|++++.+.
T Consensus 37 ~y~~Aa~~fk~~-~~~~~A~~ay~kAa~~~~~----------~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y 104 (282)
T PF14938_consen 37 LYEKAANCFKLA-KDWEKAAEAYEKAADCYEK----------LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIY 104 (282)
T ss_dssp HHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHH----------TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hccchhHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHH
Confidence 4444 5555555 8999999988887643221 123345556666666666555 9999999999999986
Q ss_pred CCCCch-hhHHHHHhHhhhhhhhHHhhcc-CChHHHHHHHHHHHhcCC--Cc----HHHHHHHHHHHHhcccHHHHHHHH
Q psy13014 99 PRSCSV-SRAVFYANRSAALEKLASYLSL-EKPDQSILACSKAITLNP--SY----LKVYQRRARLYQQSDKLDEALADY 170 (229)
Q Consensus 99 p~~~~~-~~~~~~~~lg~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~~~~~~A~~~~ 170 (229)
-..... .-+.++..+|.+ |... |++++|+++|.+|+.+.. +. ...+..+|.++..+|+|++|++.|
T Consensus 105 ~~~G~~~~aA~~~~~lA~~------ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~ 178 (282)
T PF14938_consen 105 REAGRFSQAAKCLKELAEI------YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIY 178 (282)
T ss_dssp HHCT-HHHHHHHHHHHHHH------HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHH------HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 443322 236678888888 8888 999999999999998732 12 346788999999999999999999
Q ss_pred HHHHHhCCCcH-------HHHHHhccCchHHHhhhhhccccccccc-ccC
Q psy13014 171 QKILELDPNNR-------DAYVATKVSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 171 ~~al~~~p~~~-------~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
++.....-+++ ..+...+.|+ ...++...|.+.+.+.. .+|
T Consensus 179 e~~~~~~l~~~l~~~~~~~~~l~a~l~~-L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 179 EEVAKKCLENNLLKYSAKEYFLKAILCH-LAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHTCCCHCTTGHHHHHHHHHHHHHH-HHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHHhhcccccchhHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCC
Confidence 99987543221 2223333343 66778888888777776 666
No 155
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.87 E-value=6.7e-08 Score=66.64 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
+.++|.+|.++... |+.++|+..|++++... ...+....++..+|.++...|++++|+..+++++.
T Consensus 1 ~~~~~~~A~a~d~~-G~~~~Ai~~Y~~Al~~g-------------L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 1 PRALYELAWAHDSL-GREEEAIPLYRRALAAG-------------LSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred CchHHHHHHHHHhc-CCHHHHHHHHHHHHHcC-------------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35789999999999 99999999999987321 13456677999999999999999999999999999
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
..|+... ...+...++.+ +...|++++|+..+-.++.
T Consensus 67 ~~p~~~~--~~~l~~f~Al~------L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 67 EFPDDEL--NAALRVFLALA------LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCccc--cHHHHHHHHHH------HHHCCCHHHHHHHHHHHHH
Confidence 9888210 16777888899 9999999999999988775
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.86 E-value=2.8e-07 Score=73.56 Aligned_cols=146 Identities=12% Similarity=0.079 Sum_probs=103.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCCc-hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHH
Q psy13014 61 SQKLEQTAISLKDEGNALFRL-NQWSESLAKYNEALRSCPRSCS-VSRAVFYANRSAALEKLASYLSLEKPDQSILACSK 138 (229)
Q Consensus 61 ~~~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~ 138 (229)
......-+..+..+|.++... |++++|+++|++|+.+...... .....++..+|.+ +..+|+|++|++.|++
T Consensus 107 ~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l------~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 107 AGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL------YARLGRYEEAIEIYEE 180 (282)
T ss_dssp CT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------HHHTT-HHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH------HHHhCCHHHHHHHHHH
Confidence 344556678999999999999 9999999999999998654322 3356778889999 9999999999999999
Q ss_pred HHhcCCC------cH-HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHH--HHHhccC---ch-HHHhhhhhccccc
Q psy13014 139 AITLNPS------YL-KVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA--YVATKVS---PD-LKLKEKNGATKLS 205 (229)
Q Consensus 139 al~~~p~------~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~l~~~---~~-~~~~~~~~a~~~~ 205 (229)
+....-+ +. ..++..+.|+...|++-.|...+++....+|..... ...+..+ +. .....+.+++.+|
T Consensus 181 ~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~ 260 (282)
T PF14938_consen 181 VAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEY 260 (282)
T ss_dssp HHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHH
T ss_pred HHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9875322 12 346678889999999999999999999999865432 1122222 21 2233377788888
Q ss_pred cccc-ccC
Q psy13014 206 PDVF-LHP 212 (229)
Q Consensus 206 ~~~~-~~p 212 (229)
..+. +||
T Consensus 261 d~~~~ld~ 268 (282)
T PF14938_consen 261 DSISRLDN 268 (282)
T ss_dssp TTSS---H
T ss_pred cccCccHH
Confidence 8877 665
No 157
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.86 E-value=9.1e-09 Score=65.66 Aligned_cols=65 Identities=25% Similarity=0.340 Sum_probs=57.0
Q ss_pred hHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC----CC---cHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 106 RAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN----PS---YLKVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 106 ~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
.+.++.++|.+ |..+|++++|+.+|++++++. ++ -+.++.++|.++...|++++|++++++++++
T Consensus 4 ~a~~~~~la~~------~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARV------YRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHH------HHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 47889999999 999999999999999999762 22 2568999999999999999999999999876
No 158
>KOG2376|consensus
Probab=98.85 E-value=6.1e-08 Score=81.49 Aligned_cols=172 Identities=17% Similarity=0.161 Sum_probs=117.2
Q ss_pred hhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHH
Q psy13014 8 QELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSES 87 (229)
Q Consensus 8 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 87 (229)
+.+...|++..+....-.++... ++|++|....++.. .........+..+.|+++.++.++|
T Consensus 37 Kil~~~pdd~~a~~cKvValIq~-~ky~~ALk~ikk~~-----------------~~~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 37 KILSIVPDDEDAIRCKVVALIQL-DKYEDALKLIKKNG-----------------ALLVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HHHhcCCCcHhhHhhhHhhhhhh-hHHHHHHHHHHhcc-----------------hhhhcchhhHHHHHHHHHcccHHHH
Confidence 45677889988888888888888 88888875443332 1112222236777888888888888
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC------------------------
Q psy13014 88 LAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN------------------------ 143 (229)
Q Consensus 88 ~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~------------------------ 143 (229)
+..++ ..++.+ ..+....|.+ ++++++|++|...|+..++.+
T Consensus 99 lk~~~---~~~~~~-----~~ll~L~AQv------lYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~ 164 (652)
T KOG2376|consen 99 LKTLK---GLDRLD-----DKLLELRAQV------LYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLL 164 (652)
T ss_pred HHHHh---cccccc-----hHHHHHHHHH------HHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHH
Confidence 88877 334444 5566667777 777777888877777765432
Q ss_pred ------CC-cHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CCCcH-------HHHHHhccCchHHHhhhhhc
Q psy13014 144 ------PS-YLKVYQRRARLYQQSDKLDEALADYQKILEL--------DPNNR-------DAYVATKVSPDLKLKEKNGA 201 (229)
Q Consensus 144 ------p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~-------~~~~~l~~~~~~~~~~~~~a 201 (229)
|. +...+|+.|.++...|+|.+|++.+++++.+ +-+.. .+...++.++ ..+|+..+|
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl-Q~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL-QLQGQTAEA 243 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH-HHhcchHHH
Confidence 22 3456888899999999999999999998432 11111 2444555565 788888888
Q ss_pred cccccccc-ccC
Q psy13014 202 TKLSPDVF-LHP 212 (229)
Q Consensus 202 ~~~~~~~~-~~p 212 (229)
..-|...+ .+|
T Consensus 244 ~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 244 SSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHhcC
Confidence 88888777 666
No 159
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.85 E-value=3.9e-08 Score=81.19 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=108.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q psy13014 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRA 154 (229)
Q Consensus 75 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 154 (229)
-..+...++++.|+..+++..+.+|.. ...++.+ +...++..+|++.+.++++.+|.+...+...|
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pev--------~~~LA~v------~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa 241 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPEV--------AVLLARV------YLLMNEEVEAIRLLNEALKENPQDSELLNLQA 241 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCcH--------HHHHHHH------HHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 344455788999999999999988753 4558888 88899999999999999999999999999999
Q ss_pred HHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcccccccccccC
Q psy13014 155 RLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVFLHP 212 (229)
Q Consensus 155 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~p 212 (229)
..+...++++.|+...++++++.|++...|+.|+.+| ..++++++|+-.++..=+.|
T Consensus 242 ~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Y-i~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECY-IQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHH-HhcCCHHHHHHHHhcCcCCC
Confidence 9999999999999999999999999999999999999 89999999987766543333
No 160
>KOG4648|consensus
Probab=98.83 E-value=2.3e-09 Score=84.83 Aligned_cols=95 Identities=23% Similarity=0.251 Sum_probs=89.5
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcc
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGAT 202 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~ 202 (229)
|+++|.|++||.+|.+++..+|.++..+.+.|.+|+++++|..|...+..++.++.....+|...+..- ..++...+|-
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR-~~Lg~~~EAK 185 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQAR-ESLGNNMEAK 185 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH-HHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998888776 8899999999
Q ss_pred ccccccc-ccCCCcccc
Q psy13014 203 KLSPDVF-LHPGQPQIQ 218 (229)
Q Consensus 203 ~~~~~~~-~~p~~~~~~ 218 (229)
++++.++ +.|++..+.
T Consensus 186 kD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 186 KDCETVLALEPKNIELK 202 (536)
T ss_pred HhHHHHHhhCcccHHHH
Confidence 9999999 999765544
No 161
>KOG4340|consensus
Probab=98.82 E-value=2.5e-08 Score=77.72 Aligned_cols=170 Identities=12% Similarity=0.085 Sum_probs=95.5
Q ss_pred hhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHH
Q psy13014 7 QQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSE 86 (229)
Q Consensus 7 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 86 (229)
+...+.+|.+.-++..+|.+|... .++..|..+|+... ...|+.....+..+..+++.+.+.+
T Consensus 34 ~s~~Er~p~~rAgLSlLgyCYY~~-Q~f~~AA~CYeQL~----------------ql~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 34 GSELERSPRSRAGLSLLGYCYYRL-QEFALAAECYEQLG----------------QLHPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHHhcCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHH----------------hhChHHHHHHHHHHHHHHHhcccHH
Confidence 334567888888888889999888 88888888887766 4566777777777777777777777
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHhcccHH
Q psy13014 87 SLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP--SYLKVYQRRARLYQQSDKLD 164 (229)
Q Consensus 87 A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~ 164 (229)
|+......... |. .+..+...-+.+ .+..+++..+....++ -| +.+....+.|.+.++.|+++
T Consensus 97 ALrV~~~~~D~-~~----L~~~~lqLqaAI------kYse~Dl~g~rsLveQ----lp~en~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 97 ALRVAFLLLDN-PA----LHSRVLQLQAAI------KYSEGDLPGSRSLVEQ----LPSENEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHHHHHhcCC-HH----HHHHHHHHHHHH------hcccccCcchHHHHHh----ccCCCccchhccchheeeccccHH
Confidence 77665433221 11 012222222333 3344444433322221 22 33444555555555555555
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 165 EALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 165 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
.|++-|+.+++...-++-.-++++.+. .+.+++..|++...+++
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEII 205 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHH
Confidence 555555555555555555555555444 44444455544444433
No 162
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.82 E-value=2.2e-08 Score=63.89 Aligned_cols=72 Identities=19% Similarity=0.223 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC--chhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSC--SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
|..+.++..+|.++..+|+|++|+.+|++++.+..... ....+.++.++|.+ +..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~------~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGEC------YYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH------HHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhh
Confidence 56778999999999999999999999999998732111 12347889999999 99999999999999999876
No 163
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.78 E-value=3.8e-08 Score=81.24 Aligned_cols=72 Identities=21% Similarity=0.197 Sum_probs=67.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHH---HHHhHhhhhhhhHHhhccCChHHHHHHHH
Q psy13014 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAV---FYANRSAALEKLASYLSLEKPDQSILACS 137 (229)
Q Consensus 61 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~---~~~~lg~~~~~~~~~~~~~~~~~A~~~~~ 137 (229)
....|+++.+++++|.+++..|+|++|+..|++++.++|++ .. +|+++|.| |..+|++++|+++++
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~-----aeA~~A~yNLAca------ya~LGr~dEAla~Lr 136 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP-----DEAQAAYYNKACC------HAYREEGKKAADCLR 136 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-----hHHHHHHHHHHHH------HHHcCCHHHHHHHHH
Confidence 34678899999999999999999999999999999999998 74 59999999 999999999999999
Q ss_pred HHHhcC
Q psy13014 138 KAITLN 143 (229)
Q Consensus 138 ~al~~~ 143 (229)
+|+++.
T Consensus 137 rALels 142 (453)
T PLN03098 137 TALRDY 142 (453)
T ss_pred HHHHhc
Confidence 999983
No 164
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.77 E-value=3.7e-07 Score=78.19 Aligned_cols=131 Identities=13% Similarity=0.097 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
..++++.++..+...|++++|+++++++|...|.. ++.|...|.+ +.+.|++.+|.++.+.|..+++.+
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~-----~ely~~Kari------lKh~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL-----VELYMTKARI------LKHAGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHhCChhh
Confidence 35778999999999999999999999999999999 9999999999 999999999999999999999988
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC--c-----HHHHHH--hccCchHHHhhhhhccccccccc
Q psy13014 147 LKVYQRRARLYQQSDKLDEALADYQKILELDPN--N-----RDAYVA--TKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~-----~~~~~~--l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
--.-...+..+.+.|+.++|...+..-..-+-+ . ...|+. .|.++ .+.+++..|++.|..+.
T Consensus 262 RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~-~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 262 RYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY-LRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHH
Confidence 887778899999999999999998776555421 1 124443 34445 77888888888777665
No 165
>KOG1130|consensus
Probab=98.76 E-value=2.7e-08 Score=80.62 Aligned_cols=196 Identities=13% Similarity=0.069 Sum_probs=129.4
Q ss_pred chhhcccCCchHH----HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH-------------------------
Q psy13014 6 YQQELSKNPSFLY----TIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLF------------------------- 56 (229)
Q Consensus 6 ~~~~l~~~p~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------------------- 56 (229)
|+.+++.-.++.. .+..+|-.++.+ ++|++|..+-..-+...+.+...++
T Consensus 40 f~aA~qvGTeDl~tLSAIYsQLGNAyfyL-~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc 118 (639)
T KOG1130|consen 40 FKAALQVGTEDLSTLSAIYSQLGNAYFYL-KDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCC 118 (639)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcchhhhH-hhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHH
Confidence 5667777776654 356678889888 9999998866433322222211111
Q ss_pred -----hhhhhhhHHHHHHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHHhCCCCCchh-hHHHH
Q psy13014 57 -----YLFCSQKLEQTAISLKDEGNALFRLNQ--------------------WSESLAKYNEALRSCPRSCSVS-RAVFY 110 (229)
Q Consensus 57 -----~~~~~~~~~~~~~~~~~~g~~~~~~~~--------------------~~~A~~~~~~al~~~p~~~~~~-~~~~~ 110 (229)
.........-...+++++|++|...|+ ++.|+++|..-+++.....+.. ...++
T Consensus 119 ~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~ 198 (639)
T KOG1130|consen 119 FRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAY 198 (639)
T ss_pred HHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchh
Confidence 001122333566789999999988765 4566677776666654432211 24467
Q ss_pred HhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHh----CCCc
Q psy13014 111 ANRSAALEKLASYLSLEKPDQSILACSKAITLNPS------YLKVYQRRARLYQQSDKLDEALADYQKILEL----DPNN 180 (229)
Q Consensus 111 ~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~ 180 (229)
-++|.. |+-+|+|++||.+-+.-+.+... .-.++.++|.++..+|+++.|+++|+..+.+ ....
T Consensus 199 GnLGNT------yYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~ 272 (639)
T KOG1130|consen 199 GNLGNT------YYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT 272 (639)
T ss_pred cccCce------eeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh
Confidence 777777 99999999999988877766422 2357889999999999999999999987644 3322
Q ss_pred H--HHHHHhccCchHHHhhhhhccccccccc
Q psy13014 181 R--DAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 181 ~--~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
. ..-+.++..+ .-++++++|+..+.+.+
T Consensus 273 vEAQscYSLgNty-tll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 273 VEAQSCYSLGNTY-TLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHHHHHHHhhhHH-HHHHHHHHHHHHHHHHH
Confidence 2 3445666666 66777888877776655
No 166
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.76 E-value=5.2e-07 Score=72.74 Aligned_cols=186 Identities=15% Similarity=0.110 Sum_probs=147.6
Q ss_pred hhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH--------HHHHHHHH------------------Hhhhh
Q psy13014 7 QQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFY--------IQFIFHVL------------------FYLFC 60 (229)
Q Consensus 7 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~------------------~~~~~ 60 (229)
.+++++.|.++.++-+...+|... |++.+......+.... .++-.... .|...
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~-g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRL-GAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHh-ccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 467889999999999999999999 9999888777544321 11111110 12233
Q ss_pred hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHH
Q psy13014 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAI 140 (229)
Q Consensus 61 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al 140 (229)
+....+++......+.-+...|..++|.+....+++..-+ +.+...++.+ .-+++.+=++..++.+
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D------~~L~~~~~~l--------~~~d~~~l~k~~e~~l 321 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD------PRLCRLIPRL--------RPGDPEPLIKAAEKWL 321 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC------hhHHHHHhhc--------CCCCchHHHHHHHHHH
Confidence 4445566888888999999999999999999999998766 3455555544 7889999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 141 TLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 141 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
+..|+++..+..+|..+.+.+.+.+|...|+.+++..|+.. .+..++.++ .+.++...|...+++++
T Consensus 322 ~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~-~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 322 KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADAL-DQLGEPEEAEQVRREAL 388 (400)
T ss_pred HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHH-HHcCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998755 456888888 78888777777777665
No 167
>KOG4234|consensus
Probab=98.74 E-value=1.8e-08 Score=74.11 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=90.3
Q ss_pred HHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH
Q psy13014 108 VFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL-----KVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182 (229)
Q Consensus 108 ~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 182 (229)
.-.-.-|.- ++..|+|++|..-|..||.+.|..+ ..|.+.|.++.+++.++.|+..+.++++++|.+..
T Consensus 96 d~lK~EGN~------~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k 169 (271)
T KOG4234|consen 96 DSLKKEGNE------LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK 169 (271)
T ss_pred HHHHHHHHH------hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH
Confidence 334445666 9999999999999999999998763 36888999999999999999999999999999999
Q ss_pred HHHHhccCchHHHhhhhhccccccccc-ccCCCc
Q psy13014 183 AYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQP 215 (229)
Q Consensus 183 ~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~ 215 (229)
++...+.++ +++..+.+|+.+|.+++ .+|..-
T Consensus 170 Al~RRAeay-ek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 170 ALERRAEAY-EKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHHHHHHH-HhhhhHHHHHHHHHHHHHhCcchH
Confidence 999999999 89999999999999999 999554
No 168
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.72 E-value=2.2e-07 Score=65.33 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
+..++..|...+.. |++.+|+..|+......+ ..+-...+...+|.+++..+++++|+..+++-++
T Consensus 10 ~~~ly~~a~~~l~~-~~Y~~A~~~le~L~~ryP-------------~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 10 PQELYQEAQEALQK-GNYEEAIKQLEALDTRYP-------------FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCC-------------CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45788999999999 999999999987763322 3445667889999999999999999999999999
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHhhccCC---------------hHHHHHHHHHHHhcCCCcHHH
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASYLSLEK---------------PDQSILACSKAITLNPSYLKV 149 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~ 149 (229)
++|.+.. ...+++.+|.+ ++.+.. ...|...|++++...|++..+
T Consensus 76 LhP~hp~--vdYa~Y~~gL~------~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 76 LHPTHPN--VDYAYYMRGLS------YYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred hCCCCCC--ccHHHHHHHHH------HHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 9998843 36678888988 777665 889999999999999998654
No 169
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.71 E-value=2.5e-07 Score=71.48 Aligned_cols=111 Identities=11% Similarity=0.115 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy13014 20 IYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCP 99 (229)
Q Consensus 20 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 99 (229)
.|..+.-+... |++..|...|.+++... ...+..+.+++.+|++++.+|+|++|...|..+++-.|
T Consensus 144 ~Y~~A~~~~ks-gdy~~A~~~F~~fi~~Y-------------P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P 209 (262)
T COG1729 144 LYNAALDLYKS-GDYAEAEQAFQAFIKKY-------------PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP 209 (262)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHcC-------------CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC
Confidence 78888888888 99999999999888332 25567788999999999999999999999999999998
Q ss_pred CCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHH
Q psy13014 100 RSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQR 152 (229)
Q Consensus 100 ~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 152 (229)
++.+ -++.++.+|.| ...+|+.++|-..++++++..|+...+-.-
T Consensus 210 ~s~K--ApdallKlg~~------~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 210 KSPK--APDALLKLGVS------LGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred CCCC--ChHHHHHHHHH------HHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 7644 27899999999 999999999999999999999998776443
No 170
>KOG2796|consensus
Probab=98.67 E-value=7.6e-07 Score=68.39 Aligned_cols=124 Identities=11% Similarity=0.124 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-CchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRS-CSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
..+..+.....+|.+..+.|+.+.|..+|+..-+....- .......+..+.+.+ +.-.+++..|...+.+.+.
T Consensus 207 ~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i------~lg~nn~a~a~r~~~~i~~ 280 (366)
T KOG2796|consen 207 YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL------HLGQNNFAEAHRFFTEILR 280 (366)
T ss_pred CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh------eecccchHHHHHHHhhccc
Confidence 346788889999999999999999999999554432110 001125677888888 9999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH---HHHHHhccCch
Q psy13014 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR---DAYVATKVSPD 192 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~ 192 (229)
.+|.++.+..+.|.|+..+|+..+|++..+.++++.|... ....++..++.
T Consensus 281 ~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyE 334 (366)
T KOG2796|consen 281 MDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYE 334 (366)
T ss_pred cCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999743 34455555543
No 171
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=6.7e-08 Score=72.08 Aligned_cols=106 Identities=21% Similarity=0.239 Sum_probs=96.8
Q ss_pred chhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH
Q psy13014 103 SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182 (229)
Q Consensus 103 ~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 182 (229)
++.++..++.+|.. |-.+|-..-|.-.|.+++.+.|+.+.++..+|..+...|+|+.|.+.|...+++||...-
T Consensus 61 ~eeRA~l~fERGvl------YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y 134 (297)
T COG4785 61 DEERAQLLFERGVL------YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 134 (297)
T ss_pred hHHHHHHHHHhcch------hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH
Confidence 34579999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCchHHHhhhhhccccccccc-ccCCCc
Q psy13014 183 AYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQP 215 (229)
Q Consensus 183 ~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~ 215 (229)
+..+.|... .-.+++.-|.+++...+ .||+++
T Consensus 135 a~lNRgi~~-YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 135 AHLNRGIAL-YYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred HHhccceee-eecCchHhhHHHHHHHHhcCCCCh
Confidence 999999887 67788888888888888 777553
No 172
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.60 E-value=2.4e-06 Score=64.26 Aligned_cols=123 Identities=28% Similarity=0.334 Sum_probs=80.9
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCC-CCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC-cHHHHHHHH
Q psy13014 77 ALFRLNQWSESLAKYNEALRSCPR-SCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS-YLKVYQRRA 154 (229)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la 154 (229)
++...++++.|...+.+++...|. .. ........+.. +...++++.|+..+.+++...+. ....+..++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNE---LAEALLALGAL------LEALGRYEEALELLEKALKLNPDDDAEALLNLG 209 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccc---hHHHHHHhhhH------HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhh
Confidence 677777777777777777665552 10 15555556666 66777777777777777777777 577777777
Q ss_pred HHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 155 RLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 155 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
.++...+++++|+..+..++...|.....+..++..+. ..+....+...+.+.+
T Consensus 210 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 210 LLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL-ELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH-HcCCHHHHHHHHHHHH
Confidence 77777777777777777777777775555555555552 3333444444444444
No 173
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.55 E-value=5.8e-06 Score=62.14 Aligned_cols=170 Identities=21% Similarity=0.259 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
.......+..+... +.+..+...+...... ...+.....+...|......+++..++..+.+++.
T Consensus 59 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (291)
T COG0457 59 AGLLLLLALALLKL-GRLEEALELLEKALEL--------------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALA 123 (291)
T ss_pred hHHHHHHHHHHHHc-ccHHHHHHHHHHHHhh--------------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34444445555555 5555555555444311 14567777888999999999999999999999999
Q ss_pred hCCCCCchhhHHHHHhHhh-hhhhhHHhhccCChHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHhcccHHHHHHHHHH
Q psy13014 97 SCPRSCSVSRAVFYANRSA-ALEKLASYLSLEKPDQSILACSKAITLNP---SYLKVYQRRARLYQQSDKLDEALADYQK 172 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~-~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (229)
..+.. .......+. + +...|+++.|+..+.+++...| .....+...+..+...++++.++..+.+
T Consensus 124 ~~~~~-----~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 124 LDPDP-----DLAEALLALGA------LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred CCCCc-----chHHHHHHHHH------HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 88876 444455555 8 8999999999999999998777 4566777778888899999999999999
Q ss_pred HHHhCCC-cHHHHHHhccCchHHHhhhhhccccccccc-ccCC
Q psy13014 173 ILELDPN-NRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPG 213 (229)
Q Consensus 173 al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~ 213 (229)
++...+. ....+..++.++ ...++...+...+..++ ..|.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLY-LKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHhhCcccchHHHHHhhHHH-HHcccHHHHHHHHHHHHhhCcc
Confidence 9999999 688888888887 66666777777777776 5543
No 174
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.54 E-value=2.7e-07 Score=51.91 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhcc
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKV 189 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 189 (229)
.+++.+|.+|...|++++|+..|+++++.+|+++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356666666777777777777777777777777666666654
No 175
>KOG3081|consensus
Probab=98.52 E-value=2e-06 Score=66.17 Aligned_cols=147 Identities=10% Similarity=0.064 Sum_probs=73.0
Q ss_pred CchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy13014 14 PSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNE 93 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 93 (229)
.++...+...|.++..- +++++|........ +.++...--.++.++.+++-|....++
T Consensus 105 ~sn~i~~l~aa~i~~~~-~~~deAl~~~~~~~---------------------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 105 GSNLIDLLLAAIIYMHD-GDFDEALKALHLGE---------------------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred chhHHHHHHhhHHhhcC-CChHHHHHHHhccc---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667777777 88888877664421 222222333444455555555555555
Q ss_pred HHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy13014 94 ALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKI 173 (229)
Q Consensus 94 al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 173 (229)
...++.+..-.-.+.+|..++.- -+....|.-+|++.-...|..+..+...+.|+..+|+|++|...++.+
T Consensus 163 mq~ided~tLtQLA~awv~la~g---------gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 163 MQQIDEDATLTQLAQAWVKLATG---------GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred HHccchHHHHHHHHHHHHHHhcc---------chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 55544332111112222222222 223455555555555544555555555555555555555555555555
Q ss_pred HHhCCCcHHHHHHhccCc
Q psy13014 174 LELDPNNRDAYVATKVSP 191 (229)
Q Consensus 174 l~~~p~~~~~~~~l~~~~ 191 (229)
+..++++++.+.|+-.+.
T Consensus 234 L~kd~~dpetL~Nliv~a 251 (299)
T KOG3081|consen 234 LDKDAKDPETLANLIVLA 251 (299)
T ss_pred HhccCCCHHHHHHHHHHH
Confidence 555555555555554443
No 176
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.51 E-value=3.6e-06 Score=78.04 Aligned_cols=129 Identities=12% Similarity=0.010 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc--CC
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCP-RSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL--NP 144 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p 144 (229)
...+..+-..|.+.|++++|.+.|+...+... .+ ...|..+... |.+.|++++|+..|++..+. .|
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~-----~~tynsLI~a------y~k~G~~deAl~lf~eM~~~Gv~P 647 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT-----PEVYTIAVNS------CSQKGDWDFALSIYDDMKKKGVKP 647 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-----hHHHHHHHHH------HHhcCCHHHHHHHHHHHHHcCCCC
Confidence 34566666677777777777777777766642 23 5667777777 77777778887777777665 34
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 145 SYLKVYQRRARLYQQSDKLDEALADYQKILELD-PNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 145 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
+..+|..+..++...|++++|.+.+....+.. +.+...+..+...+ -+.++..+|.+.|..+.
T Consensus 648 -D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay-~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 648 -DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC-SNAKNWKKALELYEDIK 711 (1060)
T ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHH
Confidence 35667777777778888888888887777654 23455666666666 67777788877777664
No 177
>KOG1308|consensus
Probab=98.51 E-value=1.6e-07 Score=74.45 Aligned_cols=101 Identities=26% Similarity=0.396 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
+.-....+...+..|.++.|++.|..++.++|.. +.+|..++.+ +++++....||..|+.+++++|+..
T Consensus 114 a~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~-----a~l~~kr~sv------~lkl~kp~~airD~d~A~ein~Dsa 182 (377)
T KOG1308|consen 114 ANDKKVQASEALNDGEFDTAIELFTSAIELNPPL-----AILYAKRASV------FLKLKKPNAAIRDCDFAIEINPDSA 182 (377)
T ss_pred HHHHHHHHHHHhcCcchhhhhcccccccccCCch-----hhhcccccce------eeeccCCchhhhhhhhhhccCcccc
Confidence 3344556677788999999999999999999999 9999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELDPN 179 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 179 (229)
..|-..|.+...+|++++|..++..+.+++-+
T Consensus 183 ~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 183 KGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred cccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999988754
No 178
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.49 E-value=1.3e-07 Score=49.99 Aligned_cols=34 Identities=38% Similarity=0.584 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHH
Q psy13014 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALA 168 (229)
Q Consensus 135 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 168 (229)
+|+++|+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
No 179
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.48 E-value=1.7e-05 Score=61.00 Aligned_cols=154 Identities=14% Similarity=0.091 Sum_probs=120.1
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy13014 16 FLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEAL 95 (229)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 95 (229)
.+..+|..|...+.. |++.+|...|+.....- ...|-...+...++.++++.+++++|+...++-+
T Consensus 33 p~~~LY~~g~~~L~~-gn~~~A~~~fe~l~~~~-------------p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi 98 (254)
T COG4105 33 PASELYNEGLTELQK-GNYEEAIKYFEALDSRH-------------PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFI 98 (254)
T ss_pred CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcC-------------CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 356789999999999 99999999998776221 2445667889999999999999999999999999
Q ss_pred HhCCCCCchhhHHHHHhHhhhhhhhHHhhccC--------ChHHHHHHHHHHHhcCCCcHH---------------H--H
Q psy13014 96 RSCPRSCSVSRAVFYANRSAALEKLASYLSLE--------KPDQSILACSKAITLNPSYLK---------------V--Y 150 (229)
Q Consensus 96 ~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~--------~~~~A~~~~~~al~~~p~~~~---------------~--~ 150 (229)
++.|.+.+ ..-+++..|.+ ++..= --.+|+..++..+...|++.- + =
T Consensus 99 ~lyP~~~n--~dY~~YlkgLs------~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 99 RLYPTHPN--ADYAYYLKGLS------YFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred HhCCCCCC--hhHHHHHHHHH------HhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 99998743 24556667777 54432 245788899999999998721 1 1
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 151 QRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 151 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
...|..|.+.|.+.-|+.-++.+++..|+.+...-.+..+.
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~ 211 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLE 211 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 23577788999999999999999999888776655555543
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.47 E-value=1.1e-05 Score=59.02 Aligned_cols=125 Identities=17% Similarity=0.152 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRS-CPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
...-.+.+|+.....|++.+|..+|++++.- ...+ +.....++.+ .+..+++..|...+++..+.+|.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d-----~a~lLglA~A------qfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD-----AAMLLGLAQA------QFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC-----HHHHHHHHHH------HHhhccHHHHHHHHHHHhhcCCc
Confidence 4456788999999999999999999999885 4455 8889999999 99999999999999999999875
Q ss_pred --cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcccc
Q psy13014 146 --YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKL 204 (229)
Q Consensus 146 --~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~ 204 (229)
.+.....+|.++...|++++|...|+.+++..|+.. +....+..+ -+++...++...
T Consensus 157 ~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~-ar~~Y~e~L-a~qgr~~ea~aq 215 (251)
T COG4700 157 FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ-ARIYYAEML-AKQGRLREANAQ 215 (251)
T ss_pred cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH-HHHHHHHHH-HHhcchhHHHHH
Confidence 477888999999999999999999999999999744 444444444 444444444333
No 181
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.46 E-value=6.7e-07 Score=80.21 Aligned_cols=82 Identities=9% Similarity=0.087 Sum_probs=48.3
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCcHHHHHHhccCchHHHhhhhh
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL--DPNNRDAYVATKVSPDLKLKEKNG 200 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~ 200 (229)
|.+.|+.++|...|++..+ .+..+|..+...|...|+.++|++.|++..+. .|+.. .+..+...+ .+.+..++
T Consensus 370 y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~-~~~g~~~~ 444 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV-TFLAVLSAC-RYSGLSEQ 444 (697)
T ss_pred HHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHH-hcCCcHHH
Confidence 6666666666666665433 24556666777777777777777777766553 34333 333333344 45566666
Q ss_pred ccccccccc
Q psy13014 201 ATKLSPDVF 209 (229)
Q Consensus 201 a~~~~~~~~ 209 (229)
+.+.|..+.
T Consensus 445 a~~~f~~m~ 453 (697)
T PLN03081 445 GWEIFQSMS 453 (697)
T ss_pred HHHHHHHHH
Confidence 666666654
No 182
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.45 E-value=6.7e-06 Score=76.28 Aligned_cols=127 Identities=10% Similarity=0.068 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC-CCcH
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRSCP-RSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN-PSYL 147 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~ 147 (229)
.+..+...+.+.|++++|...+....+... .+ ...|..+..+ |.+.|++++|+..|++..... ..+.
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd-----~~tynsLI~a------y~k~G~~eeA~~lf~eM~~~g~~Pdv 719 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLG-----TVSYSSLMGA------CSNAKNWKKALELYEDIKSIKLRPTV 719 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHH------HHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 344444455555555555555555544321 11 4455555555 556666666666665554321 1234
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILEL--DPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
.+|..+...|.+.|++++|++.|++.... .|+. ..+..+...+ .+.++..+|.+.+..+.
T Consensus 720 vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~-~Ty~sLL~a~-~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNT-ITYSILLVAS-ERKDDADVGLDLLSQAK 781 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH-HHCCCHHHHHHHHHHHH
Confidence 55556666666666666666666655433 2332 2333333344 44555555655555554
No 183
>KOG1915|consensus
Probab=98.45 E-value=9.1e-06 Score=67.36 Aligned_cols=192 Identities=15% Similarity=0.120 Sum_probs=120.8
Q ss_pred ccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-------------------------
Q psy13014 4 LPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYL------------------------- 58 (229)
Q Consensus 4 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------------------- 58 (229)
+.|++.++.||-|..+++-.-.+.-.. |+.+.-.+.|++++..++.......|.
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e~~-g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEESV-GDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHhc-CCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 568899999999999999988877777 999999999999886554332221110
Q ss_pred ---hhhhhHH----HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHH
Q psy13014 59 ---FCSQKLE----QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQ 131 (229)
Q Consensus 59 ---~~~~~~~----~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~ 131 (229)
.+...-| ..+.+|...|.....+.+...|...+-.|+-..|.+ .++-..-.+ -.++++++.
T Consensus 388 vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~------KlFk~YIel------ElqL~efDR 455 (677)
T KOG1915|consen 388 VYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD------KLFKGYIEL------ELQLREFDR 455 (677)
T ss_pred HHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch------hHHHHHHHH------HHHHhhHHH
Confidence 1111111 233344445555555555555555555555555542 222222223 456777888
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH--HHHHhccCchHHHhhhhhccccccccc
Q psy13014 132 SILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD--AYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 132 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
+...|++-|+-.|.+..+|...|..-..+|+.+.|...|+-|++...-+-. .|...-... -..+++++|...|++.+
T Consensus 456 cRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFE-i~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 456 CRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFE-IEEGEFEKARALYERLL 534 (677)
T ss_pred HHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhh-hhcchHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888877766443322 222222222 44556777777777776
No 184
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.44 E-value=1.7e-06 Score=77.63 Aligned_cols=130 Identities=11% Similarity=0.044 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
...+..+-..+...|..++|..+|+...+..+-..+ ...|..+..+ +.+.|+.++|.+.+++. ...| +.
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~---~~~y~~li~~------l~r~G~~~eA~~~~~~~-~~~p-~~ 494 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR---AMHYACMIEL------LGREGLLDEAYAMIRRA-PFKP-TV 494 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC---ccchHhHHHH------HHhcCCHHHHHHHHHHC-CCCC-CH
Confidence 344555666677777777777777776653221100 4456667777 88888888888887763 2334 45
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
.+|..+..++...|+++.|...+++.+.++|++...+..+..++ .+.+++.+|.+.+..+.
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y-~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLY-NSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHH-HhCCCHHHHHHHHHHHH
Confidence 67888888888999999999999999999999888888888887 77777777777766554
No 185
>KOG2796|consensus
Probab=98.44 E-value=1.2e-05 Score=61.91 Aligned_cols=179 Identities=13% Similarity=0.139 Sum_probs=134.5
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhh----hhhhH-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 23 SCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLF----CSQKL-EQTAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 23 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
-|.+.... |...++..-.......+........... ..... .......+.+..++...++|.-.+..+.+.+..
T Consensus 128 hAe~~~~l-gnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~ 206 (366)
T KOG2796|consen 128 HAELQQYL-GNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKY 206 (366)
T ss_pred HHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHh
Confidence 35555566 7777766655444332222222111111 11111 234456778889999999999999999999999
Q ss_pred CC-CCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc----C--CCcHHHHHHHHHHHHhcccHHHHHHHH
Q psy13014 98 CP-RSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL----N--PSYLKVYQRRARLYQQSDKLDEALADY 170 (229)
Q Consensus 98 ~p-~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~----~--p~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (229)
+| .. +.+...+|.+ -++.|+-+.|..+|+++-+. + .....++.+.+.++.-.+++..|...|
T Consensus 207 ~~e~~-----p~L~s~Lgr~------~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~ 275 (366)
T KOG2796|consen 207 YPEQE-----PQLLSGLGRI------SMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFF 275 (366)
T ss_pred CCccc-----HHHHHHHHHH------HHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHH
Confidence 85 44 8899999999 99999999999999954432 2 334567788899999999999999999
Q ss_pred HHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCC
Q psy13014 171 QKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQ 214 (229)
Q Consensus 171 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~ 214 (229)
.+++..||.++.+..+.+.|. .-.++...|++..+.+. ..|..
T Consensus 276 ~~i~~~D~~~~~a~NnKALcl-lYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 276 TEILRMDPRNAVANNNKALCL-LYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhccccCCCchhhhchHHHHH-HHHHHHHHHHHHHHHHhccCCcc
Confidence 999999999999999999887 78899999999999988 88844
No 186
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.41 E-value=5.4e-07 Score=50.67 Aligned_cols=42 Identities=21% Similarity=0.352 Sum_probs=39.6
Q ss_pred HHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q psy13014 108 VFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRAR 155 (229)
Q Consensus 108 ~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 155 (229)
.++..+|.+ |..+|++++|++.|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~------~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARA------YRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHH------HHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 568889999 999999999999999999999999999999885
No 187
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.40 E-value=8.2e-07 Score=46.86 Aligned_cols=32 Identities=41% Similarity=0.624 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELDPN 179 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 179 (229)
.+|+++|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666665
No 188
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.39 E-value=4.9e-06 Score=60.56 Aligned_cols=66 Identities=18% Similarity=0.126 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhc-----cCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q psy13014 84 WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS-----LEKPDQSILACSKAITLNPSYLKVYQRRA 154 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~la 154 (229)
+++|+.-|++++.++|+. ..++.++|.++.++|.+.. ..-|++|..+|++|...+|++......+.
T Consensus 51 iedAisK~eeAL~I~P~~-----hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNK-----HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp HHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCch-----HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 478999999999999999 9999999999666665322 13488999999999999999876544433
No 189
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.39 E-value=2.4e-05 Score=65.34 Aligned_cols=173 Identities=13% Similarity=0.064 Sum_probs=121.7
Q ss_pred hhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh---------hhhHHHHHHHHHHHHHH
Q psy13014 7 QQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFC---------SQKLEQTAISLKDEGNA 77 (229)
Q Consensus 7 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~ 77 (229)
.+||+++|+...++..++.-.. .-+.++...+++++.+............. .....-...+-..+|++
T Consensus 192 ~eALei~pdCAdAYILLAEEeA---~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmC 268 (539)
T PF04184_consen 192 KEALEINPDCADAYILLAEEEA---STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMC 268 (539)
T ss_pred HHHHHhhhhhhHHHhhcccccc---cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHH
Confidence 4689999999999988875322 34567777887777654433322111100 00111234567789999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc-CCCcHHHHHHHHHH
Q psy13014 78 LFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL-NPSYLKVYQRRARL 156 (229)
Q Consensus 78 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~ 156 (229)
..+.|+.++|++.+...++.+|... ...++.++-.+ +..++.|.++...+.+-=.+ -|+.+...|..|..
T Consensus 269 arklGr~~EAIk~~rdLlke~p~~~---~l~IrenLie~------LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 269 ARKLGRLREAIKMFRDLLKEFPNLD---NLNIRENLIEA------LLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred HHHhCChHHHHHHHHHHHhhCCccc---hhhHHHHHHHH------HHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 9999999999999999999888531 27789999999 99999999999888885433 26666666666554
Q ss_pred HHh-ccc---------------HHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 157 YQQ-SDK---------------LDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 157 ~~~-~~~---------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
-.+ .++ -..|++.+.+|++.+|..+.....+..+-
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~Li 390 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLI 390 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCC
Confidence 432 111 23578999999999999998776665543
No 190
>KOG4642|consensus
Probab=98.35 E-value=3.6e-07 Score=69.04 Aligned_cols=92 Identities=23% Similarity=0.246 Sum_probs=85.1
Q ss_pred HhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccC
Q psy13014 111 ANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190 (229)
Q Consensus 111 ~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 190 (229)
..-|.. ++.-..|..|+.+|.++|.++|..+..|.+.+.|+.++++++.+.....++++++|+....++.+|.+
T Consensus 14 kE~gnk------~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 14 KEQGNK------CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred Hhcccc------ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 344666 88889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhhhhhccccccccc
Q psy13014 191 PDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 191 ~~~~~~~~~~a~~~~~~~~ 209 (229)
. ...+.+.++++.+.+++
T Consensus 88 ~-l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 88 L-LQSKGYDEAIKVLQRAY 105 (284)
T ss_pred H-HhhccccHHHHHHHHHH
Confidence 8 77888999999888885
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.34 E-value=3e-05 Score=56.87 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy13014 19 TIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSC 98 (229)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 98 (229)
-++.+|..+..+ |++.+|...|++.+.. ....++..+..+++..+..+++..|...+++..+.+
T Consensus 91 nr~rLa~al~el-Gr~~EA~~hy~qalsG---------------~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 91 NRYRLANALAEL-GRYHEAVPHYQQALSG---------------IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred HHHHHHHHHHHh-hhhhhhHHHHHHHhcc---------------ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 467788899999 9999999999887732 335778889999999999999999999999999998
Q ss_pred CCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy13014 99 PRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKIL 174 (229)
Q Consensus 99 p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 174 (229)
|.... ++.+..+|.+ +-.+|.+.+|...|+.++...|+ +.+-...+..+..+|+.++|..-+....
T Consensus 155 pa~r~---pd~~Ll~aR~------laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 155 PAFRS---PDGHLLFART------LAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred CccCC---CCchHHHHHH------HHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 86544 7778888999 99999999999999999999885 6667778899999998887766655443
No 192
>PLN03077 Protein ECB2; Provisional
Probab=98.32 E-value=9.1e-06 Score=74.69 Aligned_cols=167 Identities=12% Similarity=0.020 Sum_probs=119.2
Q ss_pred CchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy13014 14 PSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNE 93 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 93 (229)
+.+..+|..+...+... |+.++|...|++.... ...| +...+..+-..+.+.|..++|..+|+.
T Consensus 551 ~~d~~s~n~lI~~~~~~-G~~~~A~~lf~~M~~~--------------g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 551 EKDVVSWNILLTGYVAH-GKGSMAVELFNRMVES--------------GVNP-DEVTFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred CCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHHc--------------CCCC-CcccHHHHHHHHhhcChHHHHHHHHHH
Confidence 34455566666666666 7777777777654411 1122 333455555678888999999999988
Q ss_pred HHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy13014 94 ALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKI 173 (229)
Q Consensus 94 al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 173 (229)
..+..+-..+ ...|..+..+ +.+.|++++|.+.+++. .+.|+ +.+|..+-.++...|+.+.+....+++
T Consensus 615 M~~~~gi~P~---~~~y~~lv~~------l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 615 MEEKYSITPN---LKHYACVVDL------LGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred HHHHhCCCCc---hHHHHHHHHH------HHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 8754322211 6678888888 99999999999999874 45564 566777766778889999999999999
Q ss_pred HHhCCCcHHHHHHhccCchHHHhhhhhcccccccc
Q psy13014 174 LELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDV 208 (229)
Q Consensus 174 l~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 208 (229)
++++|++...+..++.++ ...+++.++.+....+
T Consensus 684 ~~l~p~~~~~y~ll~n~y-a~~g~~~~a~~vr~~M 717 (857)
T PLN03077 684 FELDPNSVGYYILLCNLY-ADAGKWDEVARVRKTM 717 (857)
T ss_pred HhhCCCCcchHHHHHHHH-HHCCChHHHHHHHHHH
Confidence 999999999999999888 6667766666555444
No 193
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.31 E-value=2.1e-06 Score=45.19 Aligned_cols=33 Identities=36% Similarity=0.581 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCc
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELDPNN 180 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 180 (229)
.+++.+|.++..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456666666666666666666666666666653
No 194
>KOG4555|consensus
Probab=98.29 E-value=2.4e-05 Score=53.95 Aligned_cols=105 Identities=15% Similarity=0.160 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy13014 19 TIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSC 98 (229)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 98 (229)
.+-..|+.+... |+.+.|++.|.+++ ...|+.+.++.+.+.++.-+|+.++|+..+++++++.
T Consensus 45 ~LEl~~valaE~-g~Ld~AlE~F~qal----------------~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 45 ELELKAIALAEA-GDLDGALELFGQAL----------------CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHHHHHHHHHhc-cchHHHHHHHHHHH----------------HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 345567788888 99999999998888 5678999999999999999999999999999999996
Q ss_pred CCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 99 PRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 99 p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
... ......++..+|.+ |..+|+.+.|...|+.+-++....+
T Consensus 108 g~~-trtacqa~vQRg~l------yRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 108 GDQ-TRTACQAFVQRGLL------YRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred Ccc-chHHHHHHHHHHHH------HHHhCchHHHHHhHHHHHHhCCHHH
Confidence 544 22336789999999 9999999999999999988766543
No 195
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.26 E-value=1.5e-06 Score=45.82 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=30.7
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
+.+|+++|.+ +..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~------~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNA------YFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHH------HHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHH------HHHhCCchHHHHHHHHHHHHCcCC
Confidence 4679999999 999999999999999999999974
No 196
>KOG1070|consensus
Probab=98.26 E-value=2.3e-05 Score=72.18 Aligned_cols=191 Identities=13% Similarity=0.037 Sum_probs=148.3
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH---------HHHHhhhhh------hh----H--
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIF---------HVLFYLFCS------QK----L-- 64 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------~~~~~~~~~------~~----~-- 64 (229)
|.+.+.-+|+....|...=.....+ ++++.|...+++++..+.+.. ..+.+.... .. .
T Consensus 1447 ferlvrssPNSSi~WI~YMaf~Lel-sEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLEL-SEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhh-hhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 6777888999988777765566677 999999999998886552211 111111100 00 0
Q ss_pred -HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 65 -EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 65 -~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
-+-...+..+..+|...+++++|.+.++..++...+. ..+|...|.. ++..++-+.|...+.+|++.-
T Consensus 1526 ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~-----~~vW~~y~~f------Ll~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1526 YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT-----RKVWIMYADF------LLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch-----hhHHHHHHHH------HhcccHHHHHHHHHHHHHhhc
Confidence 0122356677888999999999999999999998866 8899999999 999999999999999999999
Q ss_pred CC--cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 144 PS--YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 144 p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
|. +....-..|.+-++.|+.+.+...|+..+.-+|.-.+.|.-+.... .+.++.......|++++
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~e-ik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDME-IKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHH-HccCCHHHHHHHHHHHH
Confidence 98 7888888999999999999999999999999999999998877765 55555555555666665
No 197
>KOG1130|consensus
Probab=98.26 E-value=4.4e-06 Score=68.10 Aligned_cols=137 Identities=12% Similarity=0.082 Sum_probs=100.3
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC-
Q psy13014 24 CFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSC- 102 (229)
Q Consensus 24 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~- 102 (229)
|-.++-+ |+++.|+..-+..+...+-+ ......-.++.++|+++.-.|+++.|+++|.+.+.+.-.-.
T Consensus 202 GNTyYlL-Gdf~~ai~~H~~RL~ia~ef----------GDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~ 270 (639)
T KOG1130|consen 202 GNTYYLL-GDFDQAIHFHKLRLEIAQEF----------GDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN 270 (639)
T ss_pred Cceeeee-ccHHHHHHHHHHHHHHHHHh----------hhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc
Confidence 3344445 77777776555444332211 12234446888999999999999999999999877632111
Q ss_pred chhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 103 SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN------PSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 103 ~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
....+...+.+|.. |.-+.++++||.++.+-+.+. -....+++.+|.++..+|..++|+...++.+++
T Consensus 271 r~vEAQscYSLgNt------ytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 271 RTVEAQSCYSLGNT------YTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred hhHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 12247778889999 999999999999998877653 234678999999999999999999988888766
Q ss_pred C
Q psy13014 177 D 177 (229)
Q Consensus 177 ~ 177 (229)
.
T Consensus 345 s 345 (639)
T KOG1130|consen 345 S 345 (639)
T ss_pred H
Confidence 3
No 198
>KOG3785|consensus
Probab=98.25 E-value=2e-05 Score=63.25 Aligned_cols=154 Identities=18% Similarity=0.125 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
......|.+++.+ |++++|...|+-.. +...-.+..+.+++.+.+-.|.|.+|...-.++-+.
T Consensus 58 ~~~lWia~C~fhL-gdY~~Al~~Y~~~~----------------~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~ 120 (557)
T KOG3785|consen 58 SLQLWIAHCYFHL-GDYEEALNVYTFLM----------------NKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKT 120 (557)
T ss_pred HHHHHHHHHHHhh-ccHHHHHHHHHHHh----------------ccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 4566778889999 99999999886655 344455677888999999999999988776554211
Q ss_pred CCCC-----------Cch-hhHHHHHhHhhhhh---hhHH-hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc
Q psy13014 98 CPRS-----------CSV-SRAVFYANRSAALE---KLAS-YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSD 161 (229)
Q Consensus 98 ~p~~-----------~~~-~~~~~~~~lg~~~~---~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 161 (229)
|-. .++ .....+..++...+ |++. .+..-.|++||+.|.+++.-+|+....-..+|.||.++.
T Consensus 121 -pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlD 199 (557)
T KOG3785|consen 121 -PLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLD 199 (557)
T ss_pred -hHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcc
Confidence 100 000 01112222222211 1111 555567999999999999999999888899999999999
Q ss_pred cHHHHHHHHHHHHHhCCCcHHHHHHhcc
Q psy13014 162 KLDEALADYQKILELDPNNRDAYVATKV 189 (229)
Q Consensus 162 ~~~~A~~~~~~al~~~p~~~~~~~~l~~ 189 (229)
-|+-+.+.+.--++.-|+.+-+....+.
T Consensus 200 Yydvsqevl~vYL~q~pdStiA~NLkac 227 (557)
T KOG3785|consen 200 YYDVSQEVLKVYLRQFPDSTIAKNLKAC 227 (557)
T ss_pred hhhhHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 9999999999999999999887765543
No 199
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.19 E-value=3.2e-06 Score=44.42 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=30.7
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
+.+++.+|.+ ++.+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~------~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQA------YYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHH------HHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHH------HHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999 999999999999999999999985
No 200
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.18 E-value=7.6e-05 Score=57.48 Aligned_cols=111 Identities=19% Similarity=0.188 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
.+..++..|...++.|+|.+|+..|+......|.+.- ...+...++.+ +++.++++.|+...++-+.+.|.+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~--~~qa~l~l~yA------~Yk~~~y~~A~~~~drFi~lyP~~ 104 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY--SEQAQLDLAYA------YYKNGEYDLALAYIDRFIRLYPTH 104 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc--cHHHHHHHHHH------HHhcccHHHHHHHHHHHHHhCCCC
Confidence 5678999999999999999999999999999886522 26778889999 999999999999999999999887
Q ss_pred H---HHHHHHHHHHHhc--------ccHHHHHHHHHHHHHhCCCcHHHHH
Q psy13014 147 L---KVYQRRARLYQQS--------DKLDEALADYQKILELDPNNRDAYV 185 (229)
Q Consensus 147 ~---~~~~~la~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~ 185 (229)
+ .+++..|.+++.. .-..+|+..|+..++..|+..-+-.
T Consensus 105 ~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~d 154 (254)
T COG4105 105 PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPD 154 (254)
T ss_pred CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhh
Confidence 5 4688888887643 3356799999999999998764433
No 201
>KOG2376|consensus
Probab=98.16 E-value=3.9e-05 Score=65.06 Aligned_cols=120 Identities=16% Similarity=0.167 Sum_probs=93.6
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchh
Q psy13014 26 ILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVS 105 (229)
Q Consensus 26 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 105 (229)
.+... ++++++.....+.+ ...|++..++...-.+..+.++|++|+...++-....-.
T Consensus 21 ~~~~~-~e~e~a~k~~~Kil----------------~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~----- 78 (652)
T KOG2376|consen 21 RHGKN-GEYEEAVKTANKIL----------------SIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI----- 78 (652)
T ss_pred Hhccc-hHHHHHHHHHHHHH----------------hcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-----
Confidence 34444 67777777666665 455888899999999999999999999554433322222
Q ss_pred hHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 106 RAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 106 ~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
....+..+.| .++++..++|+..++ ..++.+..+....|.+++.+|+|++|+..|+..++-+
T Consensus 79 -~~~~fEKAYc------~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 79 -NSFFFEKAYC------EYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred -chhhHHHHHH------HHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 2223789999 999999999999998 5677778889999999999999999999999986554
No 202
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.15 E-value=0.00011 Score=59.66 Aligned_cols=128 Identities=15% Similarity=0.027 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
+..-...+.-+..+ |+.++|.+..+..+ ....++. ...-.-...-++...=++..++.++
T Consensus 263 p~l~~~~a~~li~l-~~~~~A~~~i~~~L-----------------k~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 263 PELVVAYAERLIRL-GDHDEAQEIIEDAL-----------------KRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred hhHHHHHHHHHHHc-CChHHHHHHHHHHH-----------------HhccChh--HHHHHhhcCCCCchHHHHHHHHHHH
Confidence 44444555556666 88888887776665 2222222 2222334567889999999999999
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
..|++ +.++..+|.. +++.+.|.+|..+++.+++..| +...+..+|.++..+|+..+|.+.++.++..
T Consensus 323 ~h~~~-----p~L~~tLG~L------~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 323 QHPED-----PLLLSTLGRL------ALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hCCCC-----hhHHHHHHHH------HHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999 9999999999 9999999999999999999988 4666889999999999999999999998844
No 203
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.14 E-value=0.00022 Score=56.92 Aligned_cols=142 Identities=11% Similarity=0.075 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhC
Q psy13014 20 IYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFR-LNQWSESLAKYNEALRSC 98 (229)
Q Consensus 20 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~ 98 (229)
|.......... +..+.+...|.++. ....-...+|...|...+. .++.+.|...|+.+++..
T Consensus 4 ~i~~m~~~~r~-~g~~~aR~vF~~a~----------------~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f 66 (280)
T PF05843_consen 4 WIQYMRFMRRT-EGIEAARKVFKRAR----------------KDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF 66 (280)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHH----------------CCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CChHHHHHHHHHHH----------------cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC
Confidence 34444455555 66888888888776 3444566788889999777 566666999999999999
Q ss_pred CCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 99 PRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL---KVYQRRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 99 p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
|.+ ..+|...... +...|+.+.|...|++++..-|... ..|......-...|+.+......+++.+
T Consensus 67 ~~~-----~~~~~~Y~~~------l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 67 PSD-----PDFWLEYLDF------LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp TT------HHHHHHHHHH------HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred CCC-----HHHHHHHHHH------HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 998 8888888888 8899999999999999999877665 5777888888899999999999999999
Q ss_pred hCCCcHHHHHHhcc
Q psy13014 176 LDPNNRDAYVATKV 189 (229)
Q Consensus 176 ~~p~~~~~~~~l~~ 189 (229)
.-|++........+
T Consensus 136 ~~~~~~~~~~f~~r 149 (280)
T PF05843_consen 136 LFPEDNSLELFSDR 149 (280)
T ss_dssp HTTTS-HHHHHHCC
T ss_pred HhhhhhHHHHHHHH
Confidence 99997776655443
No 204
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.14 E-value=2.2e-06 Score=45.18 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=31.6
Q ss_pred HHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHH
Q psy13014 90 KYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134 (229)
Q Consensus 90 ~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~ 134 (229)
+|+++|+++|++ +.+|+++|.+ +...|++++|++
T Consensus 1 ~y~kAie~~P~n-----~~a~~nla~~------~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNN-----AEAYNNLANL------YLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCC-----HHHHHHHHHH------HHHCcCHHhhcC
Confidence 478999999999 9999999999 999999999863
No 205
>KOG4340|consensus
Probab=98.11 E-value=4.8e-05 Score=59.77 Aligned_cols=143 Identities=11% Similarity=-0.013 Sum_probs=91.9
Q ss_pred ccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccC
Q psy13014 4 LPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQ 83 (229)
Q Consensus 4 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 83 (229)
.||.+.-...|......+.-+..+... +.+..|........ ....-....+...+-+.++.++
T Consensus 65 ~CYeQL~ql~P~~~qYrlY~AQSLY~A-~i~ADALrV~~~~~----------------D~~~L~~~~lqLqaAIkYse~D 127 (459)
T KOG4340|consen 65 ECYEQLGQLHPELEQYRLYQAQSLYKA-CIYADALRVAFLLL----------------DNPALHSRVLQLQAAIKYSEGD 127 (459)
T ss_pred HHHHHHHhhChHHHHHHHHHHHHHHHh-cccHHHHHHHHHhc----------------CCHHHHHHHHHHHHHHhccccc
Confidence 467888888888888888888888888 88888877653322 1111122333444555556666
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccH
Q psy13014 84 WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKL 163 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 163 (229)
+..+....+ .-|... .+....+.|.+ .++.|+|+.|++-|+.+++...-++-.-+++|.+++..|++
T Consensus 128 l~g~rsLve----Qlp~en---~Ad~~in~gCl------lykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qy 194 (459)
T KOG4340|consen 128 LPGSRSLVE----QLPSEN---EADGQINLGCL------LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQY 194 (459)
T ss_pred CcchHHHHH----hccCCC---ccchhccchhe------eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhH
Confidence 665554433 233211 15666677777 77777777777777777777776777777777777777777
Q ss_pred HHHHHHHHHHHHh
Q psy13014 164 DEALADYQKILEL 176 (229)
Q Consensus 164 ~~A~~~~~~al~~ 176 (229)
+.|+++....++.
T Consensus 195 asALk~iSEIieR 207 (459)
T KOG4340|consen 195 ASALKHISEIIER 207 (459)
T ss_pred HHHHHHHHHHHHh
Confidence 7777766665544
No 206
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.11 E-value=0.0003 Score=50.35 Aligned_cols=99 Identities=19% Similarity=0.160 Sum_probs=74.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc-----------------hhhHHHHHhHhhhhhhhHHhhccCChHHHH
Q psy13014 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCS-----------------VSRAVFYANRSAALEKLASYLSLEKPDQSI 133 (229)
Q Consensus 71 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~ 133 (229)
+...|......++...++..+.+++.+.....- .....+...++.. +...|++++|+
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~------~~~~~~~~~a~ 82 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEA------LLEAGDYEEAL 82 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHH------HHHTT-HHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH------HHhccCHHHHH
Confidence 344566667788899999999999998643311 1122334444445 88899999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 134 LACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 134 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
..+.+++..+|-+..++..+-.++...|+..+|+..|++...
T Consensus 83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998754
No 207
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.07 E-value=0.00015 Score=67.07 Aligned_cols=173 Identities=12% Similarity=-0.030 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
......|.++... |+++.+...++.++.... .........+...+|.++...|++++|...+.+++..
T Consensus 453 ~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~~-----------~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~ 520 (903)
T PRK04841 453 EFNALRAQVAIND-GDPEEAERLAELALAELP-----------LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQM 520 (903)
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHhcCC-----------CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445567777777 999999988887763211 0111223456678999999999999999999999987
Q ss_pred CCCCCch-hhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHHhcccHHHHHH
Q psy13014 98 CPRSCSV-SRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP--------SYLKVYQRRARLYQQSDKLDEALA 168 (229)
Q Consensus 98 ~p~~~~~-~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~~~~~~A~~ 168 (229)
....... ....++.++|.+ +...|++++|...+++++.+.. .....+..+|.++...|++++|..
T Consensus 521 ~~~~g~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 594 (903)
T PRK04841 521 ARQHDVYHYALWSLLQQSEI------LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQ 594 (903)
T ss_pred HhhhcchHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5533221 134567788999 9999999999999999987621 123346678999999999999999
Q ss_pred HHHHHHHhCCC-----cHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 169 DYQKILELDPN-----NRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 169 ~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
.+.+++..... ....+..++.+. ...++..+|...+..+.
T Consensus 595 ~~~~al~~~~~~~~~~~~~~~~~la~~~-~~~G~~~~A~~~l~~a~ 639 (903)
T PRK04841 595 CARKGLEVLSNYQPQQQLQCLAMLAKIS-LARGDLDNARRYLNRLE 639 (903)
T ss_pred HHHHhHHhhhccCchHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHH
Confidence 99999876332 233444456555 55666666666655554
No 208
>KOG0376|consensus
Probab=98.07 E-value=1.5e-06 Score=71.86 Aligned_cols=94 Identities=30% Similarity=0.301 Sum_probs=88.0
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcc
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGAT 202 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~ 202 (229)
.+..+.++.|+..|.+||+++|+++..+-+.+.++.+.+++..|+..+.++++++|....+++..|..+ -.++++.+|+
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~-m~l~~~~~A~ 92 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV-MALGEFKKAL 92 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH-HhHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999999999999999888 8889999999
Q ss_pred ccccccc-ccCCCccc
Q psy13014 203 KLSPDVF-LHPGQPQI 217 (229)
Q Consensus 203 ~~~~~~~-~~p~~~~~ 217 (229)
..|+... +.|+++..
T Consensus 93 ~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 93 LDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHhhhcCcCcHHH
Confidence 9999998 88866543
No 209
>KOG2471|consensus
Probab=98.07 E-value=2.5e-05 Score=65.06 Aligned_cols=124 Identities=12% Similarity=0.080 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCCCCc---hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHH
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEA-LRSCPRSCS---VSRAVFYANRSAALEKLASYLSLEKPDQSILACSK 138 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~p~~~~---~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~ 138 (229)
...+.+.+++..++.++-.|++.+|.+.+... +...|.... -.....|+++|.+ +++++.|.-++-+|.+
T Consensus 235 ~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcI------h~~~~~y~~~~~~F~k 308 (696)
T KOG2471|consen 235 IAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCI------HYQLGCYQASSVLFLK 308 (696)
T ss_pred hcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceE------eeehhhHHHHHHHHHH
Confidence 33467788899999999999999999987443 222232110 0135668999999 9999999999999999
Q ss_pred HHhc---------C---------CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCch
Q psy13014 139 AITL---------N---------PSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPD 192 (229)
Q Consensus 139 al~~---------~---------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 192 (229)
|++. . ......+|+.|..+...|+.-.|.++|.+++...-.+|..|..++.|+-
T Consensus 309 AL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 309 ALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9951 1 2335689999999999999999999999999999999999999999984
No 210
>PLN03077 Protein ECB2; Provisional
Probab=98.06 E-value=6e-05 Score=69.38 Aligned_cols=134 Identities=16% Similarity=0.113 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC-
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRS--CPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN- 143 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~- 143 (229)
+...|..+...|.+.|+.++|+..|++.... .|+ ...+..+-.+ +.+.|..++|..+|+...+..
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd------~~T~~~ll~a------~~~~g~v~ea~~~f~~M~~~~g 620 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD------EVTFISLLCA------CSRSGMVTQGLEYFHSMEEKYS 620 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC------cccHHHHHHH------HhhcChHHHHHHHHHHHHHHhC
Confidence 3445666666666777777777777666553 233 2334444445 556677777777776665322
Q ss_pred -CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCc
Q psy13014 144 -PSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQP 215 (229)
Q Consensus 144 -p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~ 215 (229)
..+...|..+..++.+.|++++|.+.+++. .+.|+ ...|..+-..+ ..-++.+.+.....+++ ++|++.
T Consensus 621 i~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac-~~~~~~e~~e~~a~~l~~l~p~~~ 691 (857)
T PLN03077 621 ITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNAC-RIHRHVELGELAAQHIFELDPNSV 691 (857)
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHH-HHcCChHHHHHHHHHHHhhCCCCc
Confidence 123456666677777777777777766654 24444 33444444444 33334444444444444 566543
No 211
>KOG2610|consensus
Probab=98.04 E-value=0.00018 Score=57.50 Aligned_cols=106 Identities=15% Similarity=0.037 Sum_probs=50.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc-CCCc---HHHH
Q psy13014 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL-NPSY---LKVY 150 (229)
Q Consensus 75 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~ 150 (229)
+...+..|++.+|-..+++.++-.|.+ ..++..--.+ ++..|+...-...+++.+-. +|+- ..+.
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtD-----lla~kfsh~a------~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~ 178 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTD-----LLAVKFSHDA------HFYNGNQIGKKNAIEKIIPKWNADLPCYSYVH 178 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchh-----hhhhhhhhhH------HHhccchhhhhhHHHHhccccCCCCcHHHHHH
Confidence 334445556666666666666666655 3333333334 44444444444445544444 3333 2222
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 151 QRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 151 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
-.++..+...|-|++|.+..+++++++|.+.-+...++.+.
T Consensus 179 GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVl 219 (491)
T KOG2610|consen 179 GMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVL 219 (491)
T ss_pred HHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHH
Confidence 23344444455555555555555555555444444444444
No 212
>KOG0545|consensus
Probab=98.03 E-value=0.00047 Score=52.81 Aligned_cols=123 Identities=16% Similarity=0.144 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH--hhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLF--YLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEAL 95 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 95 (229)
.++...|.-++.. |++.+|...|..++..+..+...-. .....+........+.+...|+...|+|-+++++....+
T Consensus 179 ~~l~q~GN~lfk~-~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 179 PVLHQEGNRLFKL-GRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred HHHHHhhhhhhhh-ccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 4567778888888 9999999999888755443321100 111123344556678899999999999999999999999
Q ss_pred HhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHH
Q psy13014 96 RSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQR 152 (229)
Q Consensus 96 ~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 152 (229)
...|.+ ..+++.+|.+ +...=+..+|.+.+.++++++|.-..+..+
T Consensus 258 ~~~~~n-----vKA~frRakA------haa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 258 RHHPGN-----VKAYFRRAKA------HAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred hcCCch-----HHHHHHHHHH------HHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 999999 9999999999 888889999999999999999987655433
No 213
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.01 E-value=0.00022 Score=65.99 Aligned_cols=177 Identities=8% Similarity=-0.067 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
......+.++... |++.++...+..+....... ................|.++...|++++|...+++++..
T Consensus 410 ~l~~~~a~~~~~~-g~~~~a~~~l~~a~~~~~~~-------~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 481 (903)
T PRK04841 410 RLVLLQAWLAQSQ-HRYSEVNTLLARAEQELKDR-------NIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAE 481 (903)
T ss_pred chHHHHHHHHHHC-CCHHHHHHHHHHHHHhcccc-------CcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3445556666666 77777777665543221100 000001123445556888999999999999999999986
Q ss_pred CCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC----c--HHHHHHHHHHHHhcccHHHHHHHHH
Q psy13014 98 CPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS----Y--LKVYQRRARLYQQSDKLDEALADYQ 171 (229)
Q Consensus 98 ~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~--~~~~~~la~~~~~~~~~~~A~~~~~ 171 (229)
.+.........+...+|.+ +...|++++|...+.+++..... . ..++..+|.++...|++++|...++
T Consensus 482 ~~~~~~~~~~~a~~~lg~~------~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 555 (903)
T PRK04841 482 LPLTWYYSRIVATSVLGEV------HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQE 555 (903)
T ss_pred CCCccHHHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5554222234567788999 99999999999999999876322 1 3467788999999999999999999
Q ss_pred HHHHhCCC--------cHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 172 KILELDPN--------NRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 172 ~al~~~p~--------~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
+++.+... ....+..++.+. ...++..+|...+.+++
T Consensus 556 ~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 556 KAFQLIEEQHLEQLPMHEFLLRIRAQLL-WEWARLDEAEQCARKGL 600 (903)
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHH-HHhcCHHHHHHHHHHhH
Confidence 99886321 122344556665 55677777777766665
No 214
>KOG1941|consensus
Probab=98.01 E-value=2e-05 Score=63.39 Aligned_cols=134 Identities=13% Similarity=0.101 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchh-hHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC---
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVS-RAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP--- 144 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--- 144 (229)
.+...+|.++..++.|+++++.|++|++....+.+.. ...++..+|.. +..++++++|+-+..+|.++-.
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgsl------f~~l~D~~Kal~f~~kA~~lv~s~~ 196 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSL------FAQLKDYEKALFFPCKAAELVNSYG 196 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHH------HHHHHhhhHHhhhhHhHHHHHHhcC
Confidence 5667799999999999999999999999865543322 35678888999 9999999999999988887632
Q ss_pred -Cc------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--CC----cHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 145 -SY------LKVYQRRARLYQQSDKLDEALADYQKILELD--PN----NRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 145 -~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~----~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
++ ..+++.++.++..+|+.-.|.++.+++.++. -. ......-++.++ ...++.+.|...|+.++
T Consensus 197 l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy-R~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 197 LKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY-RSRGDLERAFRRYEQAM 273 (518)
T ss_pred cCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH-HhcccHhHHHHHHHHHH
Confidence 22 2367889999999999999999999987663 22 233445567777 66777777777776655
No 215
>KOG1915|consensus
Probab=98.00 E-value=0.00016 Score=60.19 Aligned_cols=180 Identities=14% Similarity=0.125 Sum_probs=100.8
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
|+..+..|--+...+...|..-... +++..|...|++++ ..+..+...|...+..-.+.++..
T Consensus 62 fEd~irrnR~~~~~WikYaqwEesq-~e~~RARSv~ERAL----------------dvd~r~itLWlkYae~Emknk~vN 124 (677)
T KOG1915|consen 62 FEDQIRRNRLNMQVWIKYAQWEESQ-KEIQRARSVFERAL----------------DVDYRNITLWLKYAEFEMKNKQVN 124 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHH----------------hcccccchHHHHHHHHHHhhhhHh
Confidence 4445555555566666666666666 77777777777776 344555556666666666666666
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHH---------------------------hhccCChHHHHHHHHH
Q psy13014 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLAS---------------------------YLSLEKPDQSILACSK 138 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~---------------------------~~~~~~~~~A~~~~~~ 138 (229)
.|...+++|+.+-|.- ...|+..-...+++|+ -.+-+..+.|...|++
T Consensus 125 hARNv~dRAvt~lPRV-----dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYer 199 (677)
T KOG1915|consen 125 HARNVWDRAVTILPRV-----DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYER 199 (677)
T ss_pred HHHHHHHHHHHhcchH-----HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666666666666654 4555554444222221 2333445555555555
Q ss_pred HHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHH---HHHhccCchHHHhhhhhccccccccc
Q psy13014 139 AITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA---YVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 139 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
-+-..| .+..|...|.--...|+..-|...|+.|+..-.++... ....+... +..++++.|.-.|.-++
T Consensus 200 fV~~HP-~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fE-e~qkE~ERar~iykyAl 271 (677)
T KOG1915|consen 200 FVLVHP-KVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFE-ERQKEYERARFIYKYAL 271 (677)
T ss_pred Hheecc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 555554 35556666666666677777777777776655443322 22222222 44455555555555444
No 216
>KOG3081|consensus
Probab=97.97 E-value=0.0011 Score=51.35 Aligned_cols=144 Identities=10% Similarity=0.061 Sum_probs=102.3
Q ss_pred CchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy13014 14 PSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNE 93 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 93 (229)
-.+.++....-.++..+ .+.+-|....++.... +........+.+|..++. .-+++.+|.-+|+.
T Consensus 134 ~~~lE~~Al~VqI~lk~-~r~d~A~~~lk~mq~i-----------ded~tLtQLA~awv~la~---ggek~qdAfyifeE 198 (299)
T KOG3081|consen 134 GENLEAAALNVQILLKM-HRFDLAEKELKKMQQI-----------DEDATLTQLAQAWVKLAT---GGEKIQDAFYIFEE 198 (299)
T ss_pred cchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcc-----------chHHHHHHHHHHHHHHhc---cchhhhhHHHHHHH
Confidence 44555666666677776 6666666655444310 000011223344444432 23558899999999
Q ss_pred HHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHH-HHHH
Q psy13014 94 ALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALA-DYQK 172 (229)
Q Consensus 94 al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~-~~~~ 172 (229)
.-...|.. +......+.| ++.+++|++|...++.++..++++++++.++-.+-..+|...++.. .+.+
T Consensus 199 ~s~k~~~T-----~~llnG~Av~------~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 199 LSEKTPPT-----PLLLNGQAVC------HLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred HhcccCCC-----hHHHccHHHH------HHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 98877766 8999999999 9999999999999999999999999999999999999998766554 4555
Q ss_pred HHHhCCCcHHH
Q psy13014 173 ILELDPNNRDA 183 (229)
Q Consensus 173 al~~~p~~~~~ 183 (229)
....+|+++-.
T Consensus 268 Lk~~~p~h~~v 278 (299)
T KOG3081|consen 268 LKLSHPEHPFV 278 (299)
T ss_pred HHhcCCcchHH
Confidence 66677776644
No 217
>KOG3785|consensus
Probab=97.96 E-value=0.00046 Score=55.64 Aligned_cols=137 Identities=15% Similarity=0.084 Sum_probs=104.5
Q ss_pred cCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH---HHHHHHHHHH-------hhhhhhhHHHHHHHHHHHHHHHHHc
Q psy13014 12 KNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVF---YIQFIFHVLF-------YLFCSQKLEQTAISLKDEGNALFRL 81 (229)
Q Consensus 12 ~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~~~ 81 (229)
.+.-+.+....++.+++.+ |.+.+|....+++.. .++...+... +........+..+-...++.+++..
T Consensus 86 ~~~~~~el~vnLAcc~FyL-g~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR 164 (557)
T KOG3785|consen 86 KDDAPAELGVNLACCKFYL-GQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMR 164 (557)
T ss_pred cCCCCcccchhHHHHHHHH-HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHH
Confidence 3334456677888899999 999999887765431 1122221111 2222233344445667788899999
Q ss_pred cCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q psy13014 82 NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQS 160 (229)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 160 (229)
-.|.+|++.|.+.+..+|.. ..+-.++|.| |.++.-|+-+.+.+.--++..|+++-+...++..++.+
T Consensus 165 ~HYQeAIdvYkrvL~dn~ey-----~alNVy~ALC------yyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 165 MHYQEAIDVYKRVLQDNPEY-----IALNVYMALC------YYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRL 232 (557)
T ss_pred HHHHHHHHHHHHHHhcChhh-----hhhHHHHHHH------HHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhh
Confidence 99999999999999999998 8888899999 99999999999999999999999999998888887765
No 218
>KOG1941|consensus
Probab=97.93 E-value=0.00015 Score=58.52 Aligned_cols=144 Identities=15% Similarity=0.121 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
..+..+|..+..+ +.++.+.+.|++++.... ...+..-...++..+|..+.+.+++++|..+..+|..+
T Consensus 123 q~~l~~~~Ahlgl-s~fq~~Lesfe~A~~~A~----------~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~l 191 (518)
T KOG1941|consen 123 QVSLSMGNAHLGL-SVFQKALESFEKALRYAH----------NNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAEL 191 (518)
T ss_pred hhhhhHHHHhhhH-HHHHHHHHHHHHHHHHhh----------ccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHH
Confidence 4566678888888 889999999888874321 00111233467889999999999999999999999888
Q ss_pred CCCCC-----chhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHhcccHHHH
Q psy13014 98 CPRSC-----SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN------PSYLKVYQRRARLYQQSDKLDEA 166 (229)
Q Consensus 98 ~p~~~-----~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A 166 (229)
..... ...+..+.+.++.. +..+|..-.|.++++++.++. |.......-+|.+|...|+.+.|
T Consensus 192 v~s~~l~d~~~kyr~~~lyhmaVa------lR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~a 265 (518)
T KOG1941|consen 192 VNSYGLKDWSLKYRAMSLYHMAVA------LRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERA 265 (518)
T ss_pred HHhcCcCchhHHHHHHHHHHHHHH------HHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHH
Confidence 54332 12356778889999 999999999999999997763 34466778899999999999999
Q ss_pred HHHHHHHHHhCC
Q psy13014 167 LADYQKILELDP 178 (229)
Q Consensus 167 ~~~~~~al~~~p 178 (229)
..-|+++.....
T Consensus 266 f~rYe~Am~~m~ 277 (518)
T KOG1941|consen 266 FRRYEQAMGTMA 277 (518)
T ss_pred HHHHHHHHHHHh
Confidence 999999886643
No 219
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.91 E-value=2.4e-05 Score=41.06 Aligned_cols=32 Identities=34% Similarity=0.676 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELDPN 179 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 179 (229)
.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45666777777777777777777777776663
No 220
>KOG2047|consensus
Probab=97.91 E-value=0.0004 Score=59.85 Aligned_cols=180 Identities=11% Similarity=0.058 Sum_probs=141.2
Q ss_pred hcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHH
Q psy13014 9 ELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESL 88 (229)
Q Consensus 9 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 88 (229)
+|..||++...+.....+ .. |+..+.+..|..++..++ ...........|...|..|...|+.+.|.
T Consensus 341 lLRQn~~nV~eW~kRV~l--~e-~~~~~~i~tyteAv~~vd----------P~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVKL--YE-GNAAEQINTYTEAVKTVD----------PKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred HHhcCCccHHHHHhhhhh--hc-CChHHHHHHHHHHHHccC----------cccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 467788888888776443 34 667777777776664322 01122344568999999999999999999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC------------------cHHHH
Q psy13014 89 AKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS------------------YLKVY 150 (229)
Q Consensus 89 ~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------------------~~~~~ 150 (229)
..|+++.+..-. .-++.+.+|..-|.. -+...+++.|....++|...--+ +...|
T Consensus 408 vifeka~~V~y~-~v~dLa~vw~~waem------Elrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 408 VIFEKATKVPYK-TVEDLAEVWCAWAEM------ELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred HHHHHhhcCCcc-chHHHHHHHHHHHHH------HHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 999999997432 233468889999988 88899999999999998765211 24467
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 151 QRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 151 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
..++......|-++.....|.+.+.+.-..|....|.+..+ +.-+-++++.+.|++-+
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfL-Eeh~yfeesFk~YErgI 538 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFL-EEHKYFEESFKAYERGI 538 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhhHHHHHHHHHHHcCC
Confidence 78888889999999999999999999999999999999888 77888999999999887
No 221
>KOG1586|consensus
Probab=97.90 E-value=0.0014 Score=49.96 Aligned_cols=112 Identities=13% Similarity=0.077 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc-hhhHHHHHhHhhhhhhhHHhhcc-CChHHHHHHHHHHHhcC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCS-VSRAVFYANRSAALEKLASYLSL-EKPDQSILACSKAITLN 143 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~lg~~~~~~~~~~~~-~~~~~A~~~~~~al~~~ 143 (229)
+++...+..+.-+++..+..+|+.++++++.+..+-.. ..-+..+..+|.+ |... .++++||.+|+.+-+-.
T Consensus 71 hDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEi------yEsdl~d~ekaI~~YE~Aae~y 144 (288)
T KOG1586|consen 71 HDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEI------YESDLQDFEKAIAHYEQAAEYY 144 (288)
T ss_pred hhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHH------HhhhHHHHHHHHHHHHHHHHHH
Confidence 33444444444555666999999999999998765411 0113345567777 6544 89999999999997754
Q ss_pred CCc------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHH
Q psy13014 144 PSY------LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183 (229)
Q Consensus 144 p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 183 (229)
... -..+...|..-..+++|.+|+..|++.....-+++-.
T Consensus 145 k~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 145 KGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 332 2356667888889999999999999998777666543
No 222
>KOG2053|consensus
Probab=97.88 E-value=9.2e-05 Score=65.59 Aligned_cols=101 Identities=19% Similarity=0.211 Sum_probs=82.2
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy13014 79 FRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQ 158 (229)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 158 (229)
...++|.+|+....+.++..|+. ..+...-|.. +.++|.+++|..+++..-...+++..++--+-.||.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~-----~~a~vLkaLs------l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~ 88 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNA-----LYAKVLKALS------LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYR 88 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCc-----HHHHHHHHHH------HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHH
Confidence 45678888999999999999887 7777777888 888999999997777666667778888888889999
Q ss_pred hcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 159 QSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 159 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.+|++++|+..|++++..+|+ .+....+=.++
T Consensus 89 d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmay 120 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQKYPS-EELLYHLFMAY 120 (932)
T ss_pred HHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHH
Confidence 999999999999999999998 55555554444
No 223
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.85 E-value=0.0059 Score=45.31 Aligned_cols=105 Identities=18% Similarity=0.137 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
..+...++..++..+++++|+..++.++....+. ...+.+-.++|.+ ...+|.+++|+..++..-.. .-.+
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De--~lk~l~~lRLArv------q~q~~k~D~AL~~L~t~~~~-~w~~ 159 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDE--NLKALAALRLARV------QLQQKKADAALKTLDTIKEE-SWAA 159 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhH--HHHHHHHHHHHHH------HHHhhhHHHHHHHHhccccc-cHHH
Confidence 3456788899999999999999999999754332 1236677889999 99999999999988753221 1123
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 181 (229)
......|.++...|+-++|...|+++++.+++..
T Consensus 160 ~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 160 IVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 3456789999999999999999999999985544
No 224
>KOG1070|consensus
Probab=97.85 E-value=0.0011 Score=61.67 Aligned_cols=120 Identities=13% Similarity=0.117 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
+...+....|...|..++.+++-+.|...+.+|+..-|... .......-|.. .++.|+.+.+...|+..+.
T Consensus 1558 KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e---Hv~~IskfAqL------EFk~GDaeRGRtlfEgll~ 1628 (1710)
T KOG1070|consen 1558 KKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE---HVEFISKFAQL------EFKYGDAERGRTLFEGLLS 1628 (1710)
T ss_pred HHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh---hHHHHHHHHHH------HhhcCCchhhHHHHHHHHh
Confidence 34446788999999999999999999999999999999832 27778888899 9999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccC
Q psy13014 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 190 (229)
-.|...+.|.-+...-.+.|+.+.+...|++++.+.-.-..+.......
T Consensus 1629 ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1629 AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 9999999999999999999999999999999999887666665544443
No 225
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.84 E-value=6.4e-05 Score=59.97 Aligned_cols=119 Identities=8% Similarity=0.048 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhc-cCChHHHHHHHHHHHhcCCCcHH
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS-LEKPDQSILACSKAITLNPSYLK 148 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~ 148 (229)
+|..+.....+.+..+.|...|.+|....+.. ..+|...|.. .+. .++.+.|...|+.+++..|.+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~-----~~vy~~~A~~------E~~~~~d~~~A~~Ife~glk~f~~~~~ 71 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCT-----YHVYVAYALM------EYYCNKDPKRARKIFERGLKKFPSDPD 71 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS------THHHHHHHHH------HHHTCS-HHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCC-----HHHHHHHHHH------HHHhCCCHHHHHHHHHHHHHHCCCCHH
Confidence 45666677777777999999999998655555 7788888888 777 46666699999999999999999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH---HHHHHhccCchHHHhhhhh
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKILELDPNNR---DAYVATKVSPDLKLKEKNG 200 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~ 200 (229)
.|......+...++.+.|...|++++..-|... .+|....... .+.|+...
T Consensus 72 ~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE-~~~Gdl~~ 125 (280)
T PF05843_consen 72 FWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFE-SKYGDLES 125 (280)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHH-HHHS-HHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH-HHcCCHHH
Confidence 999999999999999999999999999877766 3444443333 34444333
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.80 E-value=0.00037 Score=59.63 Aligned_cols=109 Identities=12% Similarity=0.026 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
...|+.+..++..|..+...|+.++|++.|++++..... .......+++.+|.+ +..+.+|++|..++.+..+
T Consensus 261 ~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-~~Ql~~l~~~El~w~------~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 261 KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSE-WKQLHHLCYFELAWC------HMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh-HHhHHHHHHHHHHHH------HHHHchHHHHHHHHHHHHh
Confidence 456888889999999999999999999999998854322 223346678889999 9999999999999999998
Q ss_pred cCCCc-HHHHHHHHHHHHhcccH-------HHHHHHHHHHHHhC
Q psy13014 142 LNPSY-LKVYQRRARLYQQSDKL-------DEALADYQKILELD 177 (229)
Q Consensus 142 ~~p~~-~~~~~~la~~~~~~~~~-------~~A~~~~~~al~~~ 177 (229)
.+.-+ ....|..|.|+...++. ++|.+.|.++-.+-
T Consensus 334 ~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 334 ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 76543 34556679999999999 88888888775543
No 227
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.74 E-value=4.1e-05 Score=40.10 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=30.1
Q ss_pred HHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 108 VFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 108 ~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
.+|+.+|.+ +..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~------y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKI------YEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHH------HHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHH------HHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578999999 999999999999999999999853
No 228
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.71 E-value=0.0033 Score=51.97 Aligned_cols=171 Identities=17% Similarity=0.018 Sum_probs=127.4
Q ss_pred ccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH-----hhh--------hhhhHHHHHHH
Q psy13014 4 LPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLF-----YLF--------CSQKLEQTAIS 70 (229)
Q Consensus 4 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~--------~~~~~~~~~~~ 70 (229)
..+-..|..+|-+..++..++.++... |+...|.+..++++.......+... ... .......--.+
T Consensus 27 ~~l~~ll~~~PyHidtLlqls~v~~~~-gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ffla 105 (360)
T PF04910_consen 27 NALINLLQKNPYHIDTLLQLSEVYRQQ-GDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLA 105 (360)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHH
Confidence 344556789999999999999999999 9999999999999987764444333 111 11223445567
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC-----
Q psy13014 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS----- 145 (229)
Q Consensus 71 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----- 145 (229)
++.....+.+.|-+.-|.+..+-.+.++|.... ..+.+.+-.. ..+.++|+=-+..++........
T Consensus 106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP---~g~ll~ID~~------ALrs~~y~~Li~~~~~~~~~~~~~~~~~ 176 (360)
T PF04910_consen 106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP---LGVLLFIDYY------ALRSRQYQWLIDFSESPLAKCYRNWLSL 176 (360)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc---chhHHHHHHH------HHhcCCHHHHHHHHHhHhhhhhhhhhhh
Confidence 788888999999999999999999999998311 3445555555 56778888778777765552221
Q ss_pred cHHHHHHHHHHHHhcccH---------------HHHHHHHHHHHHhCCCcHHHH
Q psy13014 146 YLKVYQRRARLYQQSDKL---------------DEALADYQKILELDPNNRDAY 184 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~~~---------------~~A~~~~~~al~~~p~~~~~~ 184 (229)
-+...+..+.++..+++- ++|...+.+|+..-|.-....
T Consensus 177 lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~L 230 (360)
T PF04910_consen 177 LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPL 230 (360)
T ss_pred CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHH
Confidence 234677788889989888 899999999999888655433
No 229
>KOG1310|consensus
Probab=97.71 E-value=0.00022 Score=60.08 Aligned_cols=111 Identities=24% Similarity=0.272 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhc---cCChHHHHHHHHHH
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS---LEKPDQSILACSKA 139 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~---~~~~~~A~~~~~~a 139 (229)
..++.++-+...|+--+..+....|+..|.+++...|.. ..++.+++.+ +++ .|+.-.|+..+-.|
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~-----~~~l~nraa~------lmkRkW~~d~~~AlrDch~A 437 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA-----IYLLENRAAA------LMKRKWRGDSYLALRDCHVA 437 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch-----hHHHHhHHHH------HHhhhccccHHHHHHhHHhh
Confidence 446677777888888888889999999999999999998 8999999988 654 36788899999999
Q ss_pred HhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHH
Q psy13014 140 ITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184 (229)
Q Consensus 140 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 184 (229)
++++|...++|+.++.++..++++.+|+++...+....|.+....
T Consensus 438 lrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~ 482 (758)
T KOG1310|consen 438 LRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQ 482 (758)
T ss_pred ccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhh
Confidence 999999999999999999999999999999988888888665443
No 230
>KOG2610|consensus
Probab=97.69 E-value=0.00065 Score=54.40 Aligned_cols=107 Identities=8% Similarity=-0.045 Sum_probs=82.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHH
Q psy13014 59 FCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRS-CPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACS 137 (229)
Q Consensus 59 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~ 137 (229)
...+..|.+..++..--.+++.+|+.......+++.+.. +|+-.- -.-+.-..+.+ +...|-|++|.+..+
T Consensus 128 klL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~--~sYv~GmyaFg------L~E~g~y~dAEk~A~ 199 (491)
T KOG2610|consen 128 KLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPC--YSYVHGMYAFG------LEECGIYDDAEKQAD 199 (491)
T ss_pred HHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcH--HHHHHHHHHhh------HHHhccchhHHHHHH
Confidence 444566777777777778888899999988888888877 554300 02334445667 778899999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy13014 138 KAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKI 173 (229)
Q Consensus 138 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 173 (229)
++++++|.+..+...++.++...|++.++++...+.
T Consensus 200 ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 200 RALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 999999999999999999998888888888776543
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.69 E-value=0.00069 Score=58.02 Aligned_cols=113 Identities=14% Similarity=0.175 Sum_probs=91.1
Q ss_pred hhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHH
Q psy13014 7 QQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSE 86 (229)
Q Consensus 7 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 86 (229)
+...+.-|+....++..|.++... |+.++|+..|++++.... .-..-....++.+|.++..+.+|++
T Consensus 257 ~~~~~~yP~s~lfl~~~gR~~~~~-g~~~~Ai~~~~~a~~~q~------------~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 257 EEMLKRYPNSALFLFFEGRLERLK-GNLEEAIESFERAIESQS------------EWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHh-cCHHHHHHHHHHhccchh------------hHHhHHHHHHHHHHHHHHHHchHHH
Confidence 456678899999999999999999 999999999998773222 1122334678999999999999999
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCCh-------HHHHHHHHHHHhc
Q psy13014 87 SLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKP-------DQSILACSKAITL 142 (229)
Q Consensus 87 A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~-------~~A~~~~~~al~~ 142 (229)
|..+|.+..+.+.-+ .+...+..|.| +..+++. ++|.+.+.++-..
T Consensus 324 A~~~f~~L~~~s~WS----ka~Y~Y~~a~c------~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 324 AAEYFLRLLKESKWS----KAFYAYLAAAC------LLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHhccccH----HHHHHHHHHHH------HHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999999999976543 36667777888 9999988 8888888887554
No 232
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.68 E-value=0.00016 Score=42.04 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.++.+|..+.++|+|++|..+.+.+++++|++..+......+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 4677777778888888888888888888888777766555443
No 233
>KOG2471|consensus
Probab=97.63 E-value=0.00013 Score=60.88 Aligned_cols=132 Identities=13% Similarity=0.078 Sum_probs=97.9
Q ss_pred cCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHH--HHHHHHHHHHHHHHccCHHHHHH
Q psy13014 12 KNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQ--TAISLKDEGNALFRLNQWSESLA 89 (229)
Q Consensus 12 ~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~A~~ 89 (229)
+.-+.+.++++.+...+.. |++.+|...+...-.. .+ ......|+ ....|.++|.++++.|.|.-++.
T Consensus 235 ~a~~s~~~l~LKsq~eY~~-gn~~kA~KlL~~sni~----~~-----~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~ 304 (696)
T KOG2471|consen 235 IAQDSSMALLLKSQLEYAH-GNHPKAMKLLLVSNIH----KE-----AGGTITPQLSSCIFNNNLGCIHYQLGCYQASSV 304 (696)
T ss_pred hcCCCcHHHHHHHHHHHHh-cchHHHHHHHHhcccc----cc-----cCccccchhhhheeecCcceEeeehhhHHHHHH
Confidence 3447788889999999999 9999888765321100 00 00001222 33467899999999999999999
Q ss_pred HHHHHHHh---------CCCCC----chhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy13014 90 KYNEALRS---------CPRSC----SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARL 156 (229)
Q Consensus 90 ~~~~al~~---------~p~~~----~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 156 (229)
+|.+|++- .|... ..-...+.++.|.. |...|++-.|.++|.+++.....++..|.++|.|
T Consensus 305 ~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~------~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 305 LFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLL------YLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC 378 (696)
T ss_pred HHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHH------HHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 99999961 11110 01136789999999 9999999999999999999999999999999998
Q ss_pred HHh
Q psy13014 157 YQQ 159 (229)
Q Consensus 157 ~~~ 159 (229)
...
T Consensus 379 Cim 381 (696)
T KOG2471|consen 379 CIM 381 (696)
T ss_pred HHH
Confidence 764
No 234
>KOG0551|consensus
Probab=97.61 E-value=0.00041 Score=55.30 Aligned_cols=97 Identities=18% Similarity=0.243 Sum_probs=81.9
Q ss_pred hHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH
Q psy13014 106 RAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS----YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181 (229)
Q Consensus 106 ~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 181 (229)
.+.-+-.-|.- |++.++|..|+..|.+.|...-. ++..|.+.|-|...+|+|..|+....+++.++|.+.
T Consensus 80 ~Aen~KeeGN~------~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 80 QAENYKEEGNE------YFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL 153 (390)
T ss_pred HHHHHHHHhHH------HHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 45666667888 99999999999999999988533 356799999999999999999999999999999999
Q ss_pred HHHHHhccCchHHHhhhhhccccccccc
Q psy13014 182 DAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 182 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
.+++.=+.|. ..++.+..|+.-.+..+
T Consensus 154 Ka~~R~Akc~-~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 154 KAYIRGAKCL-LELERFAEAVNWCEEGL 180 (390)
T ss_pred hhhhhhhHHH-HHHHHHHHHHHHHhhhh
Confidence 9998888777 77777777666555554
No 235
>KOG1586|consensus
Probab=97.61 E-value=0.0085 Score=45.80 Aligned_cols=137 Identities=15% Similarity=0.030 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCCchh-hHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC
Q psy13014 67 TAISLKDEGNALFRL-NQWSESLAKYNEALRSCPRSCSVS-RAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP 144 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 144 (229)
-+..+..+|.+|-.. .++++|+.+|+++-.-........ -..++...+.. --.+++|.+||..|+++....-
T Consensus 112 aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~y------aa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 112 AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQY------AAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhc
Confidence 344566788888665 899999999999987654431110 12233333444 4578999999999999887765
Q ss_pred CcHH-------HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHH--HHhccCch----HHHhhhhhccccccccc
Q psy13014 145 SYLK-------VYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY--VATKVSPD----LKLKEKNGATKLSPDVF 209 (229)
Q Consensus 145 ~~~~-------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~----~~~~~~~~a~~~~~~~~ 209 (229)
++.- .++.-|.|+.-..+.-.+...+++-.+++|.....+ ..+..+.. .....+-+.++.|..+.
T Consensus 186 ~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vkefDsis 263 (288)
T KOG1586|consen 186 DNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSIS 263 (288)
T ss_pred cchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccc
Confidence 5532 355668888888888888889999999999876543 22222221 33334556666666554
No 236
>KOG2053|consensus
Probab=97.59 E-value=0.0019 Score=57.70 Aligned_cols=110 Identities=15% Similarity=0.088 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
...|+..-+....|..++++|+.++|..+++..-...+++ ......+-.| |..++++++|...|++++.
T Consensus 37 kk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D-----~~tLq~l~~~------y~d~~~~d~~~~~Ye~~~~ 105 (932)
T KOG2053|consen 37 KKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD-----DLTLQFLQNV------YRDLGKLDEAVHLYERANQ 105 (932)
T ss_pred HHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc-----hHHHHHHHHH------HHHHhhhhHHHHHHHHHHh
Confidence 5778888889999999999999999998887777777776 7778888899 9999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHH
Q psy13014 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 183 (229)
.+|+ ...++.+=++|.+.+.|.+-.+.--+..+.-|..+..
T Consensus 106 ~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yy 146 (932)
T KOG2053|consen 106 KYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYY 146 (932)
T ss_pred hCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccch
Confidence 9999 8888888889998888877655555555666776643
No 237
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.56 E-value=0.00024 Score=36.72 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKILELDPN 179 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 179 (229)
+++.+|.++...|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5667777777777777777777777777765
No 238
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.55 E-value=0.0015 Score=43.89 Aligned_cols=102 Identities=14% Similarity=0.079 Sum_probs=79.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccC-----ChHHHHHHHHHHHhcCCCcHH
Q psy13014 74 EGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE-----KPDQSILACSKAITLNPSYLK 148 (229)
Q Consensus 74 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~-----~~~~A~~~~~~al~~~p~~~~ 148 (229)
.+..++..|++-+|++..+..+...+++.. .+..+..-|.+..+++.-...- -.-.+++.+.++..+.|..+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~--~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~ 79 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDES--SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAH 79 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCc--hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHH
Confidence 467789999999999999999999887622 1256666788844444321111 245789999999999999999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
.++.+|.-+....-|++++.-.++++.+.
T Consensus 80 ~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 80 SLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 99999998888888999999999888764
No 239
>PRK10941 hypothetical protein; Provisional
Probab=97.50 E-value=0.001 Score=52.46 Aligned_cols=79 Identities=16% Similarity=0.152 Sum_probs=70.0
Q ss_pred hHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHH
Q psy13014 106 RAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185 (229)
Q Consensus 106 ~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 185 (229)
......++-.+ +.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+..
T Consensus 180 l~Rml~nLK~~------~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 180 IRKLLDTLKAA------LMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHH------HHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 34456667777 999999999999999999999999999999999999999999999999999999999998875
Q ss_pred HhccC
Q psy13014 186 ATKVS 190 (229)
Q Consensus 186 ~l~~~ 190 (229)
....+
T Consensus 254 ik~ql 258 (269)
T PRK10941 254 IRAQI 258 (269)
T ss_pred HHHHH
Confidence 44433
No 240
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.46 E-value=0.00028 Score=37.55 Aligned_cols=26 Identities=23% Similarity=0.516 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHH
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKIL 174 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al 174 (229)
++.++|.+|...|++++|+++|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666666666666666666644
No 241
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.46 E-value=0.015 Score=39.60 Aligned_cols=98 Identities=18% Similarity=0.185 Sum_probs=71.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCCc-------hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh----
Q psy13014 73 DEGNALFRLNQWSESLAKYNEALRSCPRSCS-------VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT---- 141 (229)
Q Consensus 73 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~---- 141 (229)
..|.-.++.|-|++|...+.+++.....-.. -..+.++..|+.+ +..+|+|++++...++++.
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A------~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGA------LAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHH------HHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHH------HHhhccHHHHHHHHHHHHHHHhh
Confidence 3455567789999999999999988533211 1246677888888 9999999998887777764
Q ss_pred ---cCCCcHH----HHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 142 ---LNPSYLK----VYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 142 ---~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
++.+..+ +.+..|.++..+|+.++|+..|+++-+.
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4555544 5567899999999999999999988654
No 242
>KOG2047|consensus
Probab=97.45 E-value=0.0029 Score=54.79 Aligned_cols=164 Identities=12% Similarity=0.067 Sum_probs=117.0
Q ss_pred Cccchhhcc-cCCchH-----HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy13014 3 PLPYQQELS-KNPSFL-----YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGN 76 (229)
Q Consensus 3 ~~~~~~~l~-~~p~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 76 (229)
|++|.+|++ .||.-+ ..+...|..|-.. |+++.|...|++++..- -..-.+.+.+|..-|.
T Consensus 367 i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~-~~l~~aRvifeka~~V~------------y~~v~dLa~vw~~wae 433 (835)
T KOG2047|consen 367 INTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENN-GDLDDARVIFEKATKVP------------YKTVEDLAEVWCAWAE 433 (835)
T ss_pred HHHHHHHHHccCcccCCCChhhHHHHHHHHHHhc-CcHHHHHHHHHHhhcCC------------ccchHHHHHHHHHHHH
Confidence 677888775 677543 2455667778778 99999999999887211 1234567889999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCC--------c-----hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 77 ALFRLNQWSESLAKYNEALRSCPRSC--------S-----VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~p~~~--------~-----~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
.-....+++.|..+.+.|...-.... . .....+|...+.. ....|-++.....|++.+.+.
T Consensus 434 mElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl------eEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 434 MELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL------EESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred HHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH------HHHhccHHHHHHHHHHHHHHh
Confidence 99999999999999999987622210 0 0123456666666 556677788888888888877
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--CCcHHHHH
Q psy13014 144 PSYLKVYQRRARLYQQSDKLDEALADYQKILELD--PNNRDAYV 185 (229)
Q Consensus 144 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~ 185 (229)
--.+....+.|..+....-+++|.+.|++.+.+- |.-.++|.
T Consensus 508 iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~ 551 (835)
T KOG2047|consen 508 IATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWN 551 (835)
T ss_pred cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHH
Confidence 7777777788888877777777777777777664 33444544
No 243
>KOG3824|consensus
Probab=97.44 E-value=0.00061 Score=53.95 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=66.7
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCch
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPD 192 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 192 (229)
..+.|+.++|...|+.|+.+.|.++.++..+|......++.-+|-.+|.+|+.++|.+.+++.+.++...
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~p 195 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTP 195 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccch
Confidence 7789999999999999999999999999999999999999999999999999999999999999888763
No 244
>KOG4507|consensus
Probab=97.40 E-value=0.00036 Score=59.55 Aligned_cols=106 Identities=15% Similarity=0.123 Sum_probs=92.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHH
Q psy13014 74 EGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRR 153 (229)
Q Consensus 74 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 153 (229)
-|......|+...|+.++..|+...|... .....++|.+ ..+-|-.-.|-..+.+++.++...+-.++.+
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~----~v~~v~la~~------~~~~~~~~da~~~l~q~l~~~~sepl~~~~~ 682 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQ----DVPLVNLANL------LIHYGLHLDATKLLLQALAINSSEPLTFLSL 682 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhh----cccHHHHHHH------HHHhhhhccHHHHHHHHHhhcccCchHHHhc
Confidence 34445668999999999999999998652 4567889999 8888889999999999999998889999999
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhcc
Q psy13014 154 ARLYQQSDKLDEALADYQKILELDPNNRDAYVATKV 189 (229)
Q Consensus 154 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 189 (229)
|.++..+.+.+.|++.|+.|+.++|+++.....+..
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 999999999999999999999999999887665543
No 245
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.39 E-value=0.00047 Score=35.57 Aligned_cols=33 Identities=15% Similarity=0.403 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRS 101 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 101 (229)
++++.+|.++...|++++|+..|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367899999999999999999999999999974
No 246
>KOG1308|consensus
Probab=97.37 E-value=1.2e-05 Score=63.96 Aligned_cols=89 Identities=22% Similarity=0.259 Sum_probs=80.8
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcc
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGAT 202 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~ 202 (229)
.+..|.++.|+++|..+|.++|.....+-..+.++.++++...|+..+..+++++|+....+...+... ..++++.+|.
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~-rllg~~e~aa 202 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAE-RLLGNWEEAA 202 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHH-HHhhchHHHH
Confidence 667899999999999999999999999999999999999999999999999999999998888887776 7778888888
Q ss_pred ccccccc-ccC
Q psy13014 203 KLSPDVF-LHP 212 (229)
Q Consensus 203 ~~~~~~~-~~p 212 (229)
+++..++ ++-
T Consensus 203 ~dl~~a~kld~ 213 (377)
T KOG1308|consen 203 HDLALACKLDY 213 (377)
T ss_pred HHHHHHHhccc
Confidence 8888887 543
No 247
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.33 E-value=0.0011 Score=38.54 Aligned_cols=44 Identities=7% Similarity=0.069 Sum_probs=35.6
Q ss_pred HHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy13014 108 VFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLY 157 (229)
Q Consensus 108 ~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 157 (229)
+..+.+|.. ++++|+|++|..+++.+++++|+|..+......+-
T Consensus 2 d~lY~lAig------~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 2 DCLYYLAIG------HYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHH------HHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hhHHHHHHH------HHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 457788899 99999999999999999999999988766655443
No 248
>KOG0530|consensus
Probab=97.30 E-value=0.0018 Score=50.10 Aligned_cols=157 Identities=13% Similarity=0.102 Sum_probs=105.1
Q ss_pred hhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH-H
Q psy13014 8 QELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS-E 86 (229)
Q Consensus 8 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~ 86 (229)
.++..||.+..++-.+-.++..+..+..+..++++..+ ...|.+-++|...-.+....|++. .
T Consensus 68 d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~----------------e~npKNYQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 68 DAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEII----------------EDNPKNYQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred HHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHH----------------HhCccchhHHHHHHHHHHHhcCcccc
Confidence 45677888887777777777776456677677666655 567777778877777777777777 7
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh------c
Q psy13014 87 SLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ------S 160 (229)
Q Consensus 87 A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------~ 160 (229)
-+++....+..+..+ ..+|..+-.| ...-+.++.-+.+..+.++.+--|-.+|...=-+... .
T Consensus 132 ELef~~~~l~~DaKN-----YHaWshRqW~------~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~ 200 (318)
T KOG0530|consen 132 ELEFTKLMLDDDAKN-----YHAWSHRQWV------LRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISK 200 (318)
T ss_pred hHHHHHHHHhccccc-----hhhhHHHHHH------HHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccH
Confidence 777788888877777 7777777777 6666677777777777777665554444432111111 1
Q ss_pred ccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 161 DKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 161 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
-..+.-+.+..+.+.+.|++..+|..|.-++
T Consensus 201 ~~le~El~yt~~~I~~vP~NeSaWnYL~G~l 231 (318)
T KOG0530|consen 201 AELERELNYTKDKILLVPNNESAWNYLKGLL 231 (318)
T ss_pred HHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 1244455666667777777777776666555
No 249
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.26 E-value=0.00057 Score=34.35 Aligned_cols=31 Identities=42% Similarity=0.579 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKILELDPN 179 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 179 (229)
+++.+|.++...|++++|+..++++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666666654
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.24 E-value=0.0022 Score=54.00 Aligned_cols=105 Identities=16% Similarity=0.086 Sum_probs=66.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC----------
Q psy13014 74 EGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN---------- 143 (229)
Q Consensus 74 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~---------- 143 (229)
+-....+.++...-++.-.+|++++|+. +.+|..+|.- ......+|...++++++..
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdC-----AdAYILLAEE--------eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~ 240 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDC-----ADAYILLAEE--------EASTIVEAEELLRQAVKAGEASLGKSQFL 240 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhh-----hHHHhhcccc--------cccCHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 3344456777888888888888888887 7777777653 2233344444444444321
Q ss_pred -------------CCc--HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC--cHHHHHHhccCc
Q psy13014 144 -------------PSY--LKVYQRRARLYQQSDKLDEALADYQKILELDPN--NRDAYVATKVSP 191 (229)
Q Consensus 144 -------------p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~ 191 (229)
+.+ ..+-.++|+|..++|+.++|++.++..++..|. +..++.++..++
T Consensus 241 ~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~L 305 (539)
T PF04184_consen 241 QHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEAL 305 (539)
T ss_pred hcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHH
Confidence 000 223456788888888888888888888877664 344666666665
No 251
>PRK10941 hypothetical protein; Provisional
Probab=97.20 E-value=0.0071 Score=47.83 Aligned_cols=78 Identities=18% Similarity=0.095 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
...+.++-.++.+.++++.|+.+.+..+.+.|++ +.-+..+|.+ |.++|.+..|...++.-++..|+++
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~d-----p~e~RDRGll------~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPED-----PYEIRDRGLI------YAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHcCCcHHHHHHHHHHHHhCCCch
Confidence 3456677788999999999999999999999999 9999999999 9999999999999999999999998
Q ss_pred HHHHHHHHH
Q psy13014 148 KVYQRRARL 156 (229)
Q Consensus 148 ~~~~~la~~ 156 (229)
.+-.-...+
T Consensus 250 ~a~~ik~ql 258 (269)
T PRK10941 250 ISEMIRAQI 258 (269)
T ss_pred hHHHHHHHH
Confidence 876555444
No 252
>KOG3824|consensus
Probab=97.16 E-value=0.0023 Score=50.74 Aligned_cols=82 Identities=15% Similarity=0.114 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
....+......+.-....|+.++|...|+.|+.+.|.+ +++...+|.. ...-++.-+|-.+|-+|+.+.
T Consensus 112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~-----p~~L~e~G~f------~E~~~~iv~ADq~Y~~ALtis 180 (472)
T KOG3824|consen 112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTN-----PQILIEMGQF------REMHNEIVEADQCYVKALTIS 180 (472)
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCC-----HHHHHHHhHH------HHhhhhhHhhhhhhheeeeeC
Confidence 33555666677778889999999999999999999999 9999999999 888899999999999999999
Q ss_pred CCcHHHHHHHHHH
Q psy13014 144 PSYLKVYQRRARL 156 (229)
Q Consensus 144 p~~~~~~~~la~~ 156 (229)
|.+.+++.+.+..
T Consensus 181 P~nseALvnR~RT 193 (472)
T KOG3824|consen 181 PGNSEALVNRART 193 (472)
T ss_pred CCchHHHhhhhcc
Confidence 9999998887654
No 253
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.16 E-value=0.0056 Score=43.68 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
.....++..++..+...|++++|+..+++++..+|.+ ..+|..+-.+ +...|+...|+..|++...
T Consensus 59 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~-----E~~~~~lm~~------~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 59 ELYLDALERLAEALLEAGDYEEALRLLQRALALDPYD-----EEAYRLLMRA------LAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT------HHHHHHHHHH------HHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHH------HHHCcCHHHHHHHHHHHHH
Confidence 3455677888889999999999999999999999999 9999999999 9999999999999988754
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.014 Score=46.16 Aligned_cols=101 Identities=13% Similarity=0.145 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHH---------
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSK--------- 138 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~--------- 138 (229)
...-+..+......+++.+|...|..++...|.+ ..+...++.| +...|+.+.|...+..
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~-----~~~~~~la~~------~l~~g~~e~A~~iL~~lP~~~~~~~ 202 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN-----SEAKLLLAEC------LLAAGDVEAAQAILAALPLQAQDKA 202 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc-----chHHHHHHHH------HHHcCChHHHHHHHHhCcccchhhH
Confidence 3445566777888899999999999999998888 8888888888 8888887666544432
Q ss_pred -------------------------HHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy13014 139 -------------------------AITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179 (229)
Q Consensus 139 -------------------------al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 179 (229)
.+..+|++..+-+.+|..+...|+.+.|.+.+-..+..+-.
T Consensus 203 ~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 203 AHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 22335777777777777777777777777777777766543
No 255
>KOG2396|consensus
Probab=97.11 E-value=0.0069 Score=51.06 Aligned_cols=96 Identities=9% Similarity=0.069 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhccc-H
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK-L 163 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~ 163 (229)
..-+..|+.|....+.+ ..+|...... ..+.+.+.+-...|.+++..+|+++..|..-|.-.+..+. .
T Consensus 88 ~rIv~lyr~at~rf~~D-----~~lW~~yi~f------~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni 156 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGD-----VKLWLSYIAF------CKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNI 156 (568)
T ss_pred HHHHHHHHHHHHhcCCC-----HHHHHHHHHH------HHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccch
Confidence 44557789999999887 8888887666 5566668999999999999999999999999998888876 9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 164 DEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 164 ~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
+.|...|.++++.+|+.+..|...-++.
T Consensus 157 ~saRalflrgLR~npdsp~Lw~eyfrmE 184 (568)
T KOG2396|consen 157 ESARALFLRGLRFNPDSPKLWKEYFRME 184 (568)
T ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHH
Confidence 9999999999999999999998766554
No 256
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.11 E-value=0.00072 Score=35.94 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=23.7
Q ss_pred HHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 109 FYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 109 ~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
++.++|.+ |..+|++++|+.+|++++.+
T Consensus 1 al~~Lg~~------~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRI------YRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHH------HHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHH------HHHcCCHHHHHHHHHHHHHh
Confidence 46789999 99999999999999996644
No 257
>KOG1585|consensus
Probab=97.10 E-value=0.05 Score=42.03 Aligned_cols=122 Identities=16% Similarity=0.093 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc-hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCS-VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
.|+.+..-...+--.....+.++|+..|++++.+...... ......+...+.+ +.+++.+.+|-..+.+-...
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~------lVrl~kf~Eaa~a~lKe~~~ 179 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV------LVRLEKFTEAATAFLKEGVA 179 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH------hhhhHHhhHHHHHHHHhhhH
Confidence 3555555556666677788899999999999888654322 2235566667777 88999999998777664332
Q ss_pred ------CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh----CCCcHHHHHHhccCc
Q psy13014 143 ------NPSYLKVYQRRARLYQQSDKLDEALADYQKILEL----DPNNRDAYVATKVSP 191 (229)
Q Consensus 143 ------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~ 191 (229)
.|...+.+...-.++....+|..|..+++..-++ .|++.....+|-..+
T Consensus 180 ~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 180 ADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 2445566666667777888999999999997765 345555555555555
No 258
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.08 E-value=0.015 Score=47.68 Aligned_cols=147 Identities=16% Similarity=0.129 Sum_probs=98.2
Q ss_pred CchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy13014 14 PSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNE 93 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 93 (229)
......+...+.+.... |.++.|...+.++..... ......+.+.+..+......|+..+|+..++.
T Consensus 143 ~~~~~~~l~~a~~aRk~-g~~~~A~~~l~~~~~~~~------------~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~ 209 (352)
T PF02259_consen 143 EELAETWLKFAKLARKA-GNFQLALSALNRLFQLNP------------SSESLLPRVFLEYAKLLWAQGEQEEAIQKLRE 209 (352)
T ss_pred hHHHHHHHHHHHHHHHC-CCcHHHHHHHHHHhccCC------------cccCCCcchHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445566666666666 777777666655431000 00112677888999999999999999999988
Q ss_pred HHHhCCC-C----------------------------CchhhHHHHHhHhhhhhhhHHhhcc------CChHHHHHHHHH
Q psy13014 94 ALRSCPR-S----------------------------CSVSRAVFYANRSAALEKLASYLSL------EKPDQSILACSK 138 (229)
Q Consensus 94 al~~~p~-~----------------------------~~~~~~~~~~~lg~~~~~~~~~~~~------~~~~~A~~~~~~ 138 (229)
.+..... . .....+.++..+|.- .... +..+.++..|.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w------~~~~~~~~~~~~~~~~~~~~~~ 283 (352)
T PF02259_consen 210 LLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKW------LDELYSKLSSESSDEILKYYKE 283 (352)
T ss_pred HHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHH------HHhhccccccccHHHHHHHHHH
Confidence 8882111 1 001223444444444 4444 788999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHhccc-----------------HHHHHHHHHHHHHhCCC
Q psy13014 139 AITLNPSYLKVYQRRARLYQQSDK-----------------LDEALADYQKILELDPN 179 (229)
Q Consensus 139 al~~~p~~~~~~~~la~~~~~~~~-----------------~~~A~~~~~~al~~~p~ 179 (229)
+++.+|...++|+..|..+...=. ...|+..|-+++..++.
T Consensus 284 a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 284 ATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999998888765421 23488888888888887
No 259
>KOG1585|consensus
Probab=97.05 E-value=0.059 Score=41.67 Aligned_cols=172 Identities=21% Similarity=0.189 Sum_probs=104.3
Q ss_pred HHHHH-HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy13014 20 IYFSC-FILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSC 98 (229)
Q Consensus 20 ~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 98 (229)
.|..+ ..+... .+++++...+.+++.... .....-+-+.++-..|...-.+..+.+++.+|+++..+.
T Consensus 33 ~yekAAvafRnA-k~feKakdcLlkA~~~yE----------nnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 33 LYEKAAVAFRNA-KKFEKAKDCLLKASKGYE----------NNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHhh-ccHHHHHHHHHHHHHHHH----------hcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34443 334444 677777776666652211 111223444566667777788899999999999999885
Q ss_pred CCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHhcccHHHHHHHHHH
Q psy13014 99 PRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY------LKVYQRRARLYQQSDKLDEALADYQK 172 (229)
Q Consensus 99 p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (229)
-.+.+.+.+ +.+++|.|.....-+++.|++.|.+++.+-..+ ...+-..+.++....++.+|-..+.+
T Consensus 102 ~E~GspdtA------AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 102 VECGSPDTA------AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHhCCcchH------HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 444322212 233444455778899999999999998764333 23355568889999999998877776
Q ss_pred HH----HhCCCcHH--HHHHhccCchHHHhhhhhccccccccc
Q psy13014 173 IL----ELDPNNRD--AYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 173 al----~~~p~~~~--~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
-. +.+..... .+...-.++ .-..++..|.+.+....
T Consensus 176 e~~~~~~~~~y~~~~k~~va~ilv~-L~~~Dyv~aekc~r~~~ 217 (308)
T KOG1585|consen 176 EGVAADKCDAYNSQCKAYVAAILVY-LYAHDYVQAEKCYRDCS 217 (308)
T ss_pred hhhHHHHHhhcccHHHHHHHHHHHH-hhHHHHHHHHHHhcchh
Confidence 43 33333333 222222222 33446666666666543
No 260
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.04 E-value=0.0014 Score=49.78 Aligned_cols=61 Identities=21% Similarity=0.406 Sum_probs=57.1
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHH
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 183 (229)
....++.+.|.+.|.+++.+-|.....|+++|....+.|+++.|...|++.++++|.+...
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 5567899999999999999999999999999999999999999999999999999987653
No 261
>KOG4814|consensus
Probab=97.02 E-value=0.071 Score=46.54 Aligned_cols=102 Identities=21% Similarity=0.197 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc-hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCS-VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
..+.+.|.-+++..+|..+++.|...+.-.|.+.- ..-+....+++.| |..+.+.+.|.+++.+|-+.+|.++
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~C------YL~L~QLD~A~E~~~EAE~~d~~~~ 428 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVC------YLKLEQLDNAVEVYQEAEEVDRQSP 428 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHhhccccH
Confidence 46778899999999999999999999998876532 2246678889999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
-.-...-.+...-|+-++|+.+..+....
T Consensus 429 l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 429 LCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 88888888888889999999988877655
No 262
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.00 E-value=0.00088 Score=33.60 Aligned_cols=33 Identities=30% Similarity=0.373 Sum_probs=29.7
Q ss_pred HHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 108 VFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 108 ~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
.++..+|.+ +...++++.|+.++.++++++|.+
T Consensus 2 ~~~~~~a~~------~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNA------YLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHH------HHHHhhHHHHHHHHHHHHccCCCC
Confidence 467889999 999999999999999999998863
No 263
>KOG3617|consensus
Probab=96.99 E-value=0.0069 Score=54.09 Aligned_cols=154 Identities=11% Similarity=0.078 Sum_probs=96.8
Q ss_pred cCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH----hhh-----hhhhHHHHHHHHHHHHHHHHHcc
Q psy13014 12 KNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLF----YLF-----CSQKLEQTAISLKDEGNALFRLN 82 (229)
Q Consensus 12 ~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~g~~~~~~~ 82 (229)
.||++.++. .+.+-..+ |-+++|...|.+.- ..+..+.... |.. .....-..-..+++.+..+...+
T Consensus 797 q~~~e~eak--vAvLAieL-gMlEeA~~lYr~ck-R~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 797 QNGEEDEAK--VAVLAIEL-GMLEEALILYRQCK-RYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hCCcchhhH--HHHHHHHH-hhHHHHHHHHHHHH-HHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 345444443 33444556 88888888886553 3333333222 111 11122244567889999999999
Q ss_pred CHHHHHHHHHHH----------HHhCCCCCc-----hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc-----
Q psy13014 83 QWSESLAKYNEA----------LRSCPRSCS-----VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL----- 142 (229)
Q Consensus 83 ~~~~A~~~~~~a----------l~~~p~~~~-----~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~----- 142 (229)
+.+.|+++|+++ +.-+|.... .....+|.+-|.. ....|+.+.|+.+|..|-..
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqY------lES~GemdaAl~~Y~~A~D~fs~Vr 946 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQY------LESVGEMDAALSFYSSAKDYFSMVR 946 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHH------HhcccchHHHHHHHHHhhhhhhhee
Confidence 999999999886 222333211 0125678888888 77788888888888776421
Q ss_pred ----------------CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 143 ----------------NPSYLKVYQRRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 143 ----------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
...+-.+.|.+|..|...|++.+|+..|.+|-.
T Consensus 947 I~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred eEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 234455677778888888888888888777643
No 264
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.98 E-value=0.011 Score=45.18 Aligned_cols=99 Identities=12% Similarity=0.095 Sum_probs=71.7
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCC--CCchhhHHHHHhHhhhhhhhHHhhccCCh-------HHHHHHHHHHHhcCC---
Q psy13014 77 ALFRLNQWSESLAKYNEALRSCPR--SCSVSRAVFYANRSAALEKLASYLSLEKP-------DQSILACSKAITLNP--- 144 (229)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~lg~~~~~~~~~~~~~~~-------~~A~~~~~~al~~~p--- 144 (229)
-+.....+++|++.|.-|+-...- ......+.++..+|.+ |..+|+. .+|...|.++++...
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWl------yR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~ 159 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWL------YRDLGDEENEKRFLRKALEFYEEAYENEDFPI 159 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH------hhccCCHHHHHHHHHHHHHHHHHHHHhCcCCC
Confidence 444567788999998888765221 1112357888899999 8888884 456666666665432
Q ss_pred ---CcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH
Q psy13014 145 ---SYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181 (229)
Q Consensus 145 ---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 181 (229)
+.....+.+|.+...+|++++|+.+|.+++.......
T Consensus 160 ~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 160 EGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred CCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 2256888999999999999999999999997755444
No 265
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.94 E-value=0.031 Score=40.36 Aligned_cols=113 Identities=11% Similarity=-0.054 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
.-...+.....+-...++.+++...+...-.+.|.. +.+-..-|.. +...|++.+|+..++.+....|.
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~-----~e~~~~~~~l------~i~r~~w~dA~rlLr~l~~~~~~ 76 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEF-----PELDLFDGWL------HIVRGDWDDALRLLRELEERAPG 76 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCc-----hHHHHHHHHH------HHHhCCHHHHHHHHHHHhccCCC
Confidence 444567778888888999999999999999999999 9999999999 99999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 146 YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.+.+--.++.|+..+|+.+-=.. -..+++..+ ++.+......+.
T Consensus 77 ~p~~kALlA~CL~~~~D~~Wr~~-A~evle~~~-d~~a~~Lv~~Ll 120 (160)
T PF09613_consen 77 FPYAKALLALCLYALGDPSWRRY-ADEVLESGA-DPDARALVRALL 120 (160)
T ss_pred ChHHHHHHHHHHHHcCChHHHHH-HHHHHhcCC-ChHHHHHHHHHH
Confidence 99999999999999999764322 334455544 555554444443
No 266
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.93 E-value=0.02 Score=47.24 Aligned_cols=143 Identities=8% Similarity=-0.023 Sum_probs=93.5
Q ss_pred CchHHHHHHHHHHHHH---hhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH---------c
Q psy13014 14 PSFLYTIYFSCFILFI---LFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFR---------L 81 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---------~ 81 (229)
++.+...+..|+++.. . |+.+.|...+...+. ......++.+...|.+|-. .
T Consensus 176 ~~~~~i~~~yafALnRrn~~-gdre~Al~il~~~l~---------------~~~~~~~d~~gL~GRIyKD~~~~s~~~d~ 239 (374)
T PF13281_consen 176 ANQHNIKFQYAFALNRRNKP-GDREKALQILLPVLE---------------SDENPDPDTLGLLGRIYKDLFLESNFTDR 239 (374)
T ss_pred hcchHHHHHHHHHHhhcccC-CCHHHHHHHHHHHHh---------------ccCCCChHHHHHHHHHHHHHHHHcCccch
Confidence 3456677888888888 7 889999888877542 2344556666666666533 3
Q ss_pred cCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHH-------H-hc----CCCcHHH
Q psy13014 82 NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKA-------I-TL----NPSYLKV 149 (229)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~a-------l-~~----~p~~~~~ 149 (229)
...++|+..|.+++.++|+. ..-.|++.+ +...|.-.....-..+. + +. .-.+-+.
T Consensus 240 ~~ldkAi~~Y~kgFe~~~~~------Y~GIN~AtL------L~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd 307 (374)
T PF13281_consen 240 ESLDKAIEWYRKGFEIEPDY------YSGINAATL------LMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWD 307 (374)
T ss_pred HHHHHHHHHHHHHHcCCccc------cchHHHHHH------HHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHH
Confidence 34899999999999999764 334445555 44444322222111111 1 11 2234455
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHH
Q psy13014 150 YQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184 (229)
Q Consensus 150 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 184 (229)
+-.++.+..-.|++++|++.+++++.+.|......
T Consensus 308 ~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~ 342 (374)
T PF13281_consen 308 VATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELE 342 (374)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHH
Confidence 66677888889999999999999999987655433
No 267
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.86 E-value=0.19 Score=41.61 Aligned_cols=110 Identities=10% Similarity=0.064 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhc---cCChHHHHHHHHH-HHhc
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS---LEKPDQSILACSK-AITL 142 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~---~~~~~~A~~~~~~-al~~ 142 (229)
.+.+...+=..|....+|+.-+...+..-.+ |.........+.+..|.+ +-+ .|+.++|+..+.. +...
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~-p~~~~~~~~~i~~~yafA------LnRrn~~gdre~Al~il~~~l~~~ 212 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTCDVANQHNIKFQYAFA------LNRRNKPGDREKALQILLPVLESD 212 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-CccchhcchHHHHHHHHH------HhhcccCCCHHHHHHHHHHHHhcc
Confidence 4456667777888899999988888777666 211111227777888888 777 8999999999999 5556
Q ss_pred CCCcHHHHHHHHHHHHhc---------ccHHHHHHHHHHHHHhCCCcHHH
Q psy13014 143 NPSYLKVYQRRARLYQQS---------DKLDEALADYQKILELDPNNRDA 183 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~ 183 (229)
.+.+++++...|.+|... ...++|+.+|.++.+++|+.-..
T Consensus 213 ~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G 262 (374)
T PF13281_consen 213 ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSG 262 (374)
T ss_pred CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccch
Confidence 678899999999998643 35889999999999999865444
No 268
>KOG3364|consensus
Probab=96.82 E-value=0.019 Score=40.07 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHcc---CHHHHHHHHHHHHH-hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 70 SLKDEGNALFRLN---QWSESLAKYNEALR-SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 70 ~~~~~g~~~~~~~---~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
..++++.++.... +..+.+.+++..++ -.|.. +-+..+.++.. +.++++|+.++.+++..++..|+
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~----rRe~lyYLAvg------~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER----RRECLYYLAVG------HYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc----chhhhhhhHHH------HHHHhhHHHHHHHHHHHHhhCCC
Confidence 3444444444432 23445555555554 22221 24455555555 55566666666666666666665
Q ss_pred cHHHHHH
Q psy13014 146 YLKVYQR 152 (229)
Q Consensus 146 ~~~~~~~ 152 (229)
|..+.-.
T Consensus 104 n~Qa~~L 110 (149)
T KOG3364|consen 104 NRQALEL 110 (149)
T ss_pred cHHHHHH
Confidence 5554333
No 269
>KOG3364|consensus
Probab=96.77 E-value=0.04 Score=38.49 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=65.0
Q ss_pred HHHHHhHhhhhhhhHHhhccCC---hHHHHHHHHHHHh-cCCCc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH
Q psy13014 107 AVFYANRSAALEKLASYLSLEK---PDQSILACSKAIT-LNPSY-LKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~---~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 181 (229)
....++++.+ +....+ ..+.|..++..++ -.|.. -...|.+|..+.++|+|++++.+....++.+|++.
T Consensus 32 ~~s~f~lAwa------LV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 32 KQSQFNLAWA------LVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred HHHHHHHHHH------HHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 6778888888 776654 5678899999986 44443 46789999999999999999999999999999999
Q ss_pred HHHHHhccCc
Q psy13014 182 DAYVATKVSP 191 (229)
Q Consensus 182 ~~~~~l~~~~ 191 (229)
++......+.
T Consensus 106 Qa~~Lk~~ie 115 (149)
T KOG3364|consen 106 QALELKETIE 115 (149)
T ss_pred HHHHHHHHHH
Confidence 9987666555
No 270
>KOG0546|consensus
Probab=96.77 E-value=0.0027 Score=51.16 Aligned_cols=117 Identities=26% Similarity=0.288 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CC-----------CchhhHHHHHhHhhhhhhhHHhhccCChHHHHH
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCP---RS-----------CSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~-----------~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~ 134 (229)
......|...++.++++.|..-|.++.+.-. .. ....+...+.+++.+ -+..+.+..|+.
T Consensus 223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~------~lk~~~~~~a~~ 296 (372)
T KOG0546|consen 223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAV------GLKVKGRGGARF 296 (372)
T ss_pred hhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHh------cccccCCCccee
Confidence 4455677888999999999999888876422 11 012235567778888 899999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 135 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
....++..++....+++..+..+..+.++++|.++++.+....|++......+..+-
T Consensus 297 ~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 297 RTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred ccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998887776665
No 271
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.77 E-value=0.087 Score=43.16 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
.......+...+....+.|.++-|...+.++...++.... ..+.+.+..+.. ....|+..+|+..++..+...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~-~~~~v~~e~akl------lw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES-LLPRVFLEYAKL------LWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC-CCcchHHHHHHH------HHHcCCHHHHHHHHHHHHHHH
Confidence 5577788999999999999999999999999987633210 026677777888 889999999999998888711
Q ss_pred ---C-------------------------------CcHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHhCCCcHHH
Q psy13014 144 ---P-------------------------------SYLKVYQRRARLYQQS------DKLDEALADYQKILELDPNNRDA 183 (229)
Q Consensus 144 ---p-------------------------------~~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~p~~~~~ 183 (229)
+ ..++++..+|...... +..++++..|.++++++|+...+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~ 294 (352)
T PF02259_consen 215 LSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKA 294 (352)
T ss_pred hhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHH
Confidence 1 0134566677777777 88899999999999999999999
Q ss_pred HHHhccCch
Q psy13014 184 YVATKVSPD 192 (229)
Q Consensus 184 ~~~l~~~~~ 192 (229)
+..++..+.
T Consensus 295 ~~~~a~~~~ 303 (352)
T PF02259_consen 295 WHSWALFND 303 (352)
T ss_pred HHHHHHHHH
Confidence 999998874
No 272
>KOG3617|consensus
Probab=96.73 E-value=0.042 Score=49.38 Aligned_cols=117 Identities=13% Similarity=0.031 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH-Hhhh---hhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVL-FYLF---CSQKLEQTAISLKDEGNALFRLNQWSESLAKYNE 93 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 93 (229)
..++..+.-+-.. ++++.|.++|++.-.-..-+.+.+ .+.. ..-....+...|..-|...-..|+.+.|+.+|..
T Consensus 859 ~Tyy~yA~~Lear-~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 859 NTYYNYAKYLEAR-RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhHHHHHHHHHhh-ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 3567777777777 899999999987643222122111 1111 1112334557788889999999999999999988
Q ss_pred HHHhCCC--------CCc--------hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 94 ALRSCPR--------SCS--------VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 94 al~~~p~--------~~~--------~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
|-.-..- ..+ .....+.+.+|.. |...|+..+|+.+|.+|-.
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~------YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARM------YENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHH------hhhhHHHHHHHHHHHHHHH
Confidence 7443211 000 0114567778888 9999999999999988754
No 273
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.68 E-value=0.082 Score=40.43 Aligned_cols=86 Identities=15% Similarity=-0.015 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHHHHHHccC-------HHHHHHHHHHHHHhCCCC-CchhhHHHHHhHhhhhhhhHHhhccCChHHHHH
Q psy13014 63 KLEQTAISLKDEGNALFRLNQ-------WSESLAKYNEALRSCPRS-CSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~-------~~~A~~~~~~al~~~p~~-~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~ 134 (229)
.....+..+..+|..|...++ ..+|+..|.+++...... ...+...+.+.+|.+ ..++|++++|+.
T Consensus 113 ~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL------~rrlg~~~eA~~ 186 (214)
T PF09986_consen 113 KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGEL------NRRLGNYDEAKR 186 (214)
T ss_pred CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHH------HHHhCCHHHHHH
Confidence 344677788888888888888 456666666666654331 122346788889999 999999999999
Q ss_pred HHHHHHhcCCCcH-HHHHHHH
Q psy13014 135 ACSKAITLNPSYL-KVYQRRA 154 (229)
Q Consensus 135 ~~~~al~~~p~~~-~~~~~la 154 (229)
+|.+++.....+. ..+..+|
T Consensus 187 ~fs~vi~~~~~s~~~~l~~~A 207 (214)
T PF09986_consen 187 WFSRVIGSKKASKEPKLKDMA 207 (214)
T ss_pred HHHHHHcCCCCCCcHHHHHHH
Confidence 9999998754333 3444444
No 274
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.68 E-value=0.0079 Score=39.23 Aligned_cols=61 Identities=20% Similarity=0.126 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCc--HHHHHHhccCc
Q psy13014 131 QSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN--RDAYVATKVSP 191 (229)
Q Consensus 131 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~ 191 (229)
..+..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..++++ ..+...+-.++
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f 68 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIF 68 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHH
Confidence 34677899999999999999999999999999999999999999999876 44544444444
No 275
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.66 E-value=0.17 Score=37.54 Aligned_cols=107 Identities=14% Similarity=0.076 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
....-..++..+|..|.+.|+.++|++.|.++....... ....+.++++-.+ .+..+++.....+..++-..
T Consensus 31 ~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~--~~~id~~l~~irv------~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 31 GKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP--GHKIDMCLNVIRV------AIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH--HHHHHHHHHHHHH------HHHhCCHHHHHHHHHHHHHH
Confidence 334556789999999999999999999999977754332 2346777777778 88899999999999888665
Q ss_pred C--CCcHH----HHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 143 N--PSYLK----VYQRRARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 143 ~--p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
- +.+.. .-...|..+...++|.+|.+.|-.+....
T Consensus 103 ~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 103 IEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 3 22332 23445777888999999999987665443
No 276
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.60 E-value=0.037 Score=36.08 Aligned_cols=74 Identities=14% Similarity=0.164 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHhcccHH
Q psy13014 87 SLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY--LKVYQRRARLYQQSDKLD 164 (229)
Q Consensus 87 A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~ 164 (229)
.+..+++.+..+|++ ..+.+.+|.. +...|++++|++.+-.++..+++. ..+--.+-.++..+|.-+
T Consensus 7 ~~~al~~~~a~~P~D-----~~ar~~lA~~------~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDD-----LDARYALADA------LLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT------HHHHHHHHHH------HHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCC-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 466788999999999 9999999999 999999999999999999998765 444455555555555544
Q ss_pred HHHHHHH
Q psy13014 165 EALADYQ 171 (229)
Q Consensus 165 ~A~~~~~ 171 (229)
.-+..++
T Consensus 76 plv~~~R 82 (90)
T PF14561_consen 76 PLVSEYR 82 (90)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3333333
No 277
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.59 E-value=0.07 Score=39.77 Aligned_cols=101 Identities=10% Similarity=0.020 Sum_probs=71.1
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy13014 21 YFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPR 100 (229)
Q Consensus 21 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 100 (229)
+.++..+... ++++.|...++..+.. ..+.--.+-+-.+++.+.+++|++++|+..++..... .
T Consensus 93 L~lAk~~ve~-~~~d~A~aqL~~~l~~-------------t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~--~ 156 (207)
T COG2976 93 LELAKAEVEA-NNLDKAEAQLKQALAQ-------------TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE--S 156 (207)
T ss_pred HHHHHHHHhh-ccHHHHHHHHHHHHcc-------------chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc--c
Confidence 3345566666 7777777766655411 1122234456778999999999999999987544332 1
Q ss_pred CCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 101 SCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 101 ~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
. .+.....+|.+ +...|+-++|...|.++++..+..+
T Consensus 157 w----~~~~~elrGDi------ll~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 157 W----AAIVAELRGDI------LLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred H----HHHHHHHhhhH------HHHcCchHHHHHHHHHHHHccCChH
Confidence 1 14446668999 9999999999999999999975543
No 278
>KOG1550|consensus
Probab=96.40 E-value=0.14 Score=45.07 Aligned_cols=138 Identities=12% Similarity=0.035 Sum_probs=101.0
Q ss_pred CchHHHHHHHHHHHHHh-h---hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc-----CH
Q psy13014 14 PSFLYTIYFSCFILFIL-F---SEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN-----QW 84 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~~-~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~ 84 (229)
-.+..+.+.+|.++... . .+.+.|..+++.+..... .......+.+.+.+|.+|.+.. ++
T Consensus 241 ~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~-----------~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~ 309 (552)
T KOG1550|consen 241 LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFK-----------KAATKGLPPAQYGLGRLYLQGLGVEKIDY 309 (552)
T ss_pred hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHH-----------HHHhhcCCccccHHHHHHhcCCCCccccH
Confidence 34566677777776643 1 356777777766653200 0111225567888999998843 78
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccC---ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc-
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE---KPDQSILACSKAITLNPSYLKVYQRRARLYQQS- 160 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~- 160 (229)
..|..+|.++-.... +.+.+.+|.+ +..-. +...|..+|..|... .+..+.+++|.|+..-
T Consensus 310 ~~A~~~~~~aA~~g~-------~~a~~~lg~~------~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 310 EKALKLYTKAAELGN-------PDAQYLLGVL------YETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGL 374 (552)
T ss_pred HHHHHHHHHHHhcCC-------chHHHHHHHH------HHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCC
Confidence 889999999998754 6678889999 76554 678999999998774 5788899999998754
Q ss_pred ---ccHHHHHHHHHHHHHhC
Q psy13014 161 ---DKLDEALADYQKILELD 177 (229)
Q Consensus 161 ---~~~~~A~~~~~~al~~~ 177 (229)
-+...|+.++.++.+.+
T Consensus 375 gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc
Confidence 47899999999999998
No 279
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.38 E-value=0.1 Score=43.48 Aligned_cols=62 Identities=24% Similarity=0.411 Sum_probs=55.0
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKIL 174 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 174 (229)
..+-..+..| |+.+++.+-|+.+.-+.|.++|....-+...|.|+..+.+|.+|-..+.-+.
T Consensus 228 SfIetklv~C------YL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 228 SFIETKLVTC------YLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHHHHHh------hhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445668889 9999999999999999999999999999999999999999999887766554
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.37 E-value=0.061 Score=38.85 Aligned_cols=84 Identities=17% Similarity=0.089 Sum_probs=72.3
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHH
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 186 (229)
......+..+ -...++.+.+...+.-.--+.|..+..-..-|.++...|++.+|+..++.+....|..+.....
T Consensus 10 v~gLie~~~~------al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kAL 83 (160)
T PF09613_consen 10 VGGLIEVLSV------ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHH------HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHH
Confidence 4455555666 6778899999999998889999999999999999999999999999999999999999988888
Q ss_pred hccCchHHHhh
Q psy13014 187 TKVSPDLKLKE 197 (229)
Q Consensus 187 l~~~~~~~~~~ 197 (229)
++.|+ ..+++
T Consensus 84 lA~CL-~~~~D 93 (160)
T PF09613_consen 84 LALCL-YALGD 93 (160)
T ss_pred HHHHH-HHcCC
Confidence 88887 44443
No 281
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.29 Score=38.92 Aligned_cols=128 Identities=7% Similarity=-0.018 Sum_probs=81.4
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
|..++..+|++..+...++.++... |+.+.+...+...-...+ ........+...+..-....++.
T Consensus 157 ~~~al~~~~~~~~~~~~la~~~l~~-g~~e~A~~iL~~lP~~~~------------~~~~~~l~a~i~ll~qaa~~~~~- 222 (304)
T COG3118 157 LKQALQAAPENSEAKLLLAECLLAA-GDVEAAQAILAALPLQAQ------------DKAAHGLQAQIELLEQAAATPEI- 222 (304)
T ss_pred HHHHHHhCcccchHHHHHHHHHHHc-CChHHHHHHHHhCcccch------------hhHHHHHHHHHHHHHHHhcCCCH-
Confidence 6778888999999999999999999 988888776644321000 00011111122222222222222
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHhcc
Q psy13014 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS--YLKVYQRRARLYQQSD 161 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~ 161 (229)
..+++.+..+|++ ..+.+.+|.. +...|+++.|.+.+-..++.+-. +..+--.+-.++...|
T Consensus 223 ---~~l~~~~aadPdd-----~~aa~~lA~~------~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 ---QDLQRRLAADPDD-----VEAALALADQ------LHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred ---HHHHHHHHhCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 2355567778988 9999999999 99999999999999888877543 3344444444444444
No 282
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.22 E-value=0.39 Score=39.22 Aligned_cols=154 Identities=14% Similarity=0.066 Sum_probs=101.4
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhh------------hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSE------------IRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLK 72 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (229)
-|++.+..+|++..++.-+...--.. -. .+..+..+++++ ...|.+...+.
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~-~~~~~~~~~~~~a~~E~klsilerAL----------------~~np~~~~L~l 69 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDEL-FRLQSSSKAERRALAERKLSILERAL----------------KHNPDSERLLL 69 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHh-ccccccchhhHHHHHHHHHHHHHHHH----------------HhCCCCHHHHH
Confidence 47788999999999998876544433 21 112222233333 44566666676
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC-----C---
Q psy13014 73 DEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN-----P--- 144 (229)
Q Consensus 73 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p--- 144 (229)
.+=.+..+....++....+++++..+|.+ ..+|...-.. .++ .+..-.+......|.+++..- .
T Consensus 70 ~~l~~~~~~~~~~~l~~~we~~l~~~~~~-----~~LW~~yL~~--~q~-~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~ 141 (321)
T PF08424_consen 70 GYLEEGEKVWDSEKLAKKWEELLFKNPGS-----PELWREYLDF--RQS-NFASFTVSDVRDVYEKCLRALSRRRSGRMT 141 (321)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCC-----hHHHHHHHHH--HHH-HhccCcHHHHHHHHHHHHHHHHHhhccccc
Confidence 66667777788888899999999999988 6666554333 000 112234666666666666431 0
Q ss_pred ----------CcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHH
Q psy13014 145 ----------SYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183 (229)
Q Consensus 145 ----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 183 (229)
.-...+.++.......|-.+.|+..++-.++++--.|..
T Consensus 142 ~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~ 190 (321)
T PF08424_consen 142 SHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPES 190 (321)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccc
Confidence 012356677888889999999999999999997544433
No 283
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.20 E-value=0.015 Score=31.43 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
.++.++|.+|...|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46677888888888888888888887765
No 284
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.17 E-value=0.51 Score=39.19 Aligned_cols=158 Identities=14% Similarity=0.069 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH-----HHHHHHHHH------------h-hhhhhhHHHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFY-----IQFIFHVLF------------Y-LFCSQKLEQTAISLKDEGNAL 78 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~------------~-~~~~~~~~~~~~~~~~~g~~~ 78 (229)
+..+.+-+..-... |+++.+...|+..+.. .......+. + .......|..++++...=...
T Consensus 120 pLIhlLeAQaal~e-G~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r 198 (531)
T COG3898 120 PLIHLLEAQAALLE-GDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEAR 198 (531)
T ss_pred HHHHHHHHHHHHhc-CchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 45666777777777 9999998888644310 000000000 0 011223344445555555556
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy13014 79 FRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQ 158 (229)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 158 (229)
...|+++.|++..+......--.. ..+-...+..+--.+.-.-.-+...|..+...++++.|+-..+-..-+..++
T Consensus 199 ~~~gdWd~AlkLvd~~~~~~vie~----~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf 274 (531)
T COG3898 199 CAAGDWDGALKLVDAQRAAKVIEK----DVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALF 274 (531)
T ss_pred HhcCChHHHHHHHHHHHHHHhhch----hhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHH
Confidence 667777777777655544321110 1111112222100000122235667777777777788877777777788888
Q ss_pred hcccHHHHHHHHHHHHHhCCC
Q psy13014 159 QSDKLDEALADYQKILELDPN 179 (229)
Q Consensus 159 ~~~~~~~A~~~~~~al~~~p~ 179 (229)
..|+..++-..++.+-+.+|.
T Consensus 275 ~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 275 RDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred hccchhhhhhHHHHHHhcCCC
Confidence 888888888888888777774
No 285
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.16 E-value=0.51 Score=37.71 Aligned_cols=115 Identities=19% Similarity=0.129 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccC-------ChHH
Q psy13014 63 KLEQTAISLKDEGNALFR----LNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE-------KPDQ 131 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~-------~~~~ 131 (229)
.....+.+.+.+|..+.. ..+..+|...|.++....-... ......+|.+ |..-. +...
T Consensus 104 a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a----~~~~~~l~~~------~~~g~~~~~~~~~~~~ 173 (292)
T COG0790 104 AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA----ALAMYRLGLA------YLSGLQALAVAYDDKK 173 (292)
T ss_pred hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH----HHHHHHHHHH------HHcChhhhcccHHHHh
Confidence 344566678889998887 5699999999999999843320 2336777777 65431 3347
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 132 SILACSKAITLNPSYLKVYQRRARLYQQ----SDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 132 A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
|+..|.++-... ++.+.+.+|.+|.. ..++++|+.+|.++-+... ..+.+.++.++
T Consensus 174 A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~~~~ 233 (292)
T COG0790 174 ALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLGLMY 233 (292)
T ss_pred HHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHHH
Confidence 999999988776 78889999988865 3489999999999999887 77777777443
No 286
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.12 E-value=0.025 Score=38.09 Aligned_cols=86 Identities=12% Similarity=0.116 Sum_probs=66.0
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHhccc-----------HHHHHHHHHHHHHhCCCcHHHHHHhc
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYL---KVYQRRARLYQQSDK-----------LDEALADYQKILELDPNNRDAYVATK 188 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~l~ 188 (229)
++..|++-+|++..+..+...+++. ..+..-|.++..+.. .--|+++|.++..+.|......+.++
T Consensus 6 ~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la 85 (111)
T PF04781_consen 6 YFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELA 85 (111)
T ss_pred HHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHH
Confidence 8899999999999999999988776 445566888865542 34589999999999999988888887
Q ss_pred cCchHHHhhhhhccccccccc
Q psy13014 189 VSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 189 ~~~~~~~~~~~~a~~~~~~~~ 209 (229)
.=+ .-...+.++++.-.+.+
T Consensus 86 ~~l-~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 86 SQL-GSVKYYKKAVKKAKRGL 105 (111)
T ss_pred HHh-hhHHHHHHHHHHHHHHh
Confidence 654 33455666666655554
No 287
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.10 E-value=0.011 Score=45.00 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=54.8
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 77 ALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
...+.++.+.|.+.|.+++.+-|.. ..-|+.+|.. ..+.|+.+.|.+.|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w-----~~gwfR~g~~------~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEW-----AAGWFRLGEY------TEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchh-----hhhhhhcchh------hhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456788999999999999999998 9999999999 9999999999999999999998763
No 288
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.08 E-value=0.12 Score=42.27 Aligned_cols=98 Identities=10% Similarity=0.093 Sum_probs=75.8
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHh------hccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhccc
Q psy13014 89 AKYNEALRSCPRSCSVSRAVFYANRSAALEKLASY------LSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK 162 (229)
Q Consensus 89 ~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~------~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 162 (229)
.-+++.++.+|.+ ..+|..+...-.++-.. ....-.+.-+..+++|++.+|++...+..+-.+..+..+
T Consensus 6 ~el~~~v~~~P~d-----i~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~ 80 (321)
T PF08424_consen 6 AELNRRVRENPHD-----IEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWD 80 (321)
T ss_pred HHHHHHHHhCccc-----HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Confidence 4578889999998 88888887661111000 001124667889999999999999999998888899999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 163 LDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 163 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.++...-+++++..+|++...|..+-...
T Consensus 81 ~~~l~~~we~~l~~~~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 81 SEKLAKKWEELLFKNPGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 99999999999999999999887665443
No 289
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.08 E-value=0.038 Score=46.76 Aligned_cols=123 Identities=16% Similarity=0.115 Sum_probs=102.4
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy13014 78 LFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLY 157 (229)
Q Consensus 78 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 157 (229)
....|+...|......+++..|.. +......+.+ ...+|.|+++.+.+..+-.+-..-..+..-+-...
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~-----p~~i~l~~~i------~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQD-----PVLIQLRSVI------FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSL 367 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCC-----chhhHHHHHH------HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhh
Confidence 356788889999999999999998 8888889999 99999999999988776665555556666677788
Q ss_pred HhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccC
Q psy13014 158 QQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 158 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
..+|++++|.......+.-.-++++...--+... ..++-+.++...+.+.+ ++|
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa-~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIEDEEVLTVAAGSA-DALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred hchhhHHHHHHHHHHHhccccCChhheeeecccH-HHHhHHHHHHHHHHHHhccCC
Confidence 8999999999999999988888888765555444 78888999999999998 777
No 290
>KOG4507|consensus
Probab=96.05 E-value=0.0072 Score=51.97 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=88.9
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhc
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYL-KVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGA 201 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a 201 (229)
+...|+...|++++..|+...|... ....++|.+....|-.-.|-..+.+++.+.-+.+-..+.+|.++ .-+++..+|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~-l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAY-LALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhH-HHHhhhHHH
Confidence 6678999999999999999999764 46889999999999999999999999999988888999999999 889999999
Q ss_pred cccccccc-ccCCCcccccCC
Q psy13014 202 TKLSPDVF-LHPGQPQIQHNP 221 (229)
Q Consensus 202 ~~~~~~~~-~~p~~~~~~~~~ 221 (229)
++.+..++ ++|+++.++...
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSL 716 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHH
Confidence 99999999 999998877653
No 291
>KOG2581|consensus
Probab=96.02 E-value=0.74 Score=38.33 Aligned_cols=148 Identities=14% Similarity=0.014 Sum_probs=97.0
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy13014 21 YFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPR 100 (229)
Q Consensus 21 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 100 (229)
++++.+++.-+++++++...-+..+..+.... ....+--.+..|+.+..++-..++...-...+...++...-
T Consensus 129 ~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~n-------rRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtL 201 (493)
T KOG2581|consen 129 YLLVLLFLIDQKEYKEADKISDALLASISIQN-------RRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATL 201 (493)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhh
Confidence 33444444433677777776655553322111 11123345567888888888888877766666666554321
Q ss_pred C-CchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc--CC--CcHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 101 S-CSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL--NP--SYLKVYQRRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 101 ~-~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
- .....+.+.+.+-.+ |..-+.|++|-....++.-- .. ..+..++.+|.+..-.++|..|.+++-+|+.
T Consensus 202 rhd~e~qavLiN~LLr~------yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~r 275 (493)
T KOG2581|consen 202 RHDEEGQAVLINLLLRN------YLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALR 275 (493)
T ss_pred cCcchhHHHHHHHHHHH------HhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHH
Confidence 1 111236666667777 88999999998888876522 12 2355678889999999999999999999999
Q ss_pred hCCCcH
Q psy13014 176 LDPNNR 181 (229)
Q Consensus 176 ~~p~~~ 181 (229)
..|.+.
T Consensus 276 kapq~~ 281 (493)
T KOG2581|consen 276 KAPQHA 281 (493)
T ss_pred hCcchh
Confidence 999743
No 292
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.29 Score=42.46 Aligned_cols=113 Identities=14% Similarity=0.018 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHH-HHHHhcC
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILAC-SKAITLN 143 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~-~~al~~~ 143 (229)
++.....+ +.......+....+......++..+|.+ ..++.++|.+ ....|....++..+ ..+....
T Consensus 65 ~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~L~~a------le~~~~~~~~~~~~~~~a~~~~ 132 (620)
T COG3914 65 PELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPEN-----CPAVQNLAAA------LELDGLQFLALADISEIAEWLS 132 (620)
T ss_pred HHHHHHHH-HHhhccccccchhHHHHHhhhHhcCccc-----chHHHHHHHH------HHHhhhHHHHHHHHHHHHHhcC
Confidence 33333344 6777788889989999999999999999 8999999999 66666655555544 4588889
Q ss_pred CCcHHHHHHH------HHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhcc
Q psy13014 144 PSYLKVYQRR------ARLYQQSDKLDEALADYQKILELDPNNRDAYVATKV 189 (229)
Q Consensus 144 p~~~~~~~~l------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 189 (229)
|++......+ +.....+|+..++....++++.+.|.++.....+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~ 184 (620)
T COG3914 133 PDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMT 184 (620)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence 9987765555 888889999999999999999999998766554443
No 293
>KOG0530|consensus
Probab=95.88 E-value=0.32 Score=38.12 Aligned_cols=118 Identities=13% Similarity=0.152 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChH-HHHHHHHHH
Q psy13014 62 QKLEQTAISLKDEGNALFR-LNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPD-QSILACSKA 139 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~-~A~~~~~~a 139 (229)
...|.+-.+|.-.-.++.. ..+..+-++++...+.-+|.+ ..+|..+-.+ ....|++. .-+++.+.+
T Consensus 71 ~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKN-----YQvWHHRr~i------ve~l~d~s~rELef~~~~ 139 (318)
T KOG0530|consen 71 RLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKN-----YQVWHHRRVI------VELLGDPSFRELEFTKLM 139 (318)
T ss_pred HhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccc-----hhHHHHHHHH------HHHhcCcccchHHHHHHH
Confidence 3445555555555555544 344677788889999999999 8899988888 77788887 788999999
Q ss_pred HhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccC
Q psy13014 140 ITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190 (229)
Q Consensus 140 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 190 (229)
+..+..+--+|...-.+...-+.++.-+.+....++.|-.+..+|...-.+
T Consensus 140 l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfv 190 (318)
T KOG0530|consen 140 LDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFV 190 (318)
T ss_pred HhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEE
Confidence 999999999999999999999999999999999999998888888765444
No 294
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.82 E-value=0.99 Score=38.21 Aligned_cols=105 Identities=16% Similarity=0.064 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCCch--------------------------------------
Q psy13014 64 LEQTAISLKDEGNALFRLNQ-WSESLAKYNEALRSCPRSCSV-------------------------------------- 104 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~-------------------------------------- 104 (229)
....+..+...|.-+...|. -++|+..++.+++..+.+...
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 34556667777888888888 788888888888877665220
Q ss_pred ---hhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy13014 105 ---SRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKI 173 (229)
Q Consensus 105 ---~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 173 (229)
...+.-+.++.+.. ++..|+|.++.-+..-..++.| ++.++..+|.|+...++|++|..++.+.
T Consensus 455 i~i~e~eian~LaDAEy----Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 455 ITISEEEIANFLADAEY----LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred ccccHHHHHHHHHHHHH----HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 00111111111100 6788999999999999999999 8999999999999999999999988654
No 295
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.81 E-value=0.38 Score=41.26 Aligned_cols=143 Identities=13% Similarity=0.044 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc-
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL- 142 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~- 142 (229)
-.++-.+++.++.+|.+. ..++-...+++.++.+-++ ...-..++.. |.+ ++-+++..+|.+++..
T Consensus 95 ~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnD-----vv~~ReLa~~------yEk-ik~sk~a~~f~Ka~yrf 161 (711)
T COG1747 95 YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFND-----VVIGRELADK------YEK-IKKSKAAEFFGKALYRF 161 (711)
T ss_pred hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchh-----HHHHHHHHHH------HHH-hchhhHHHHHHHHHHHh
Confidence 346667888999999888 6677788888888887766 6666667766 444 6666666666666532
Q ss_pred -------------------CCCcHHHHHH------------HH--------HHHHhcccHHHHHHHHHHHHHhCCCcHHH
Q psy13014 143 -------------------NPSYLKVYQR------------RA--------RLYQQSDKLDEALADYQKILELDPNNRDA 183 (229)
Q Consensus 143 -------------------~p~~~~~~~~------------la--------~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 183 (229)
-|++.+..+. +| .-|....++.+|+..+...++.+..+..+
T Consensus 162 I~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~a 241 (711)
T COG1747 162 IPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWA 241 (711)
T ss_pred cchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhH
Confidence 2333322221 11 22445678999999999999999988888
Q ss_pred HHHhccCchH-------------------HHhhhhhccccccccc-ccCCCccccc
Q psy13014 184 YVATKVSPDL-------------------KLKEKNGATKLSPDVF-LHPGQPQIQH 219 (229)
Q Consensus 184 ~~~l~~~~~~-------------------~~~~~~~a~~~~~~~~-~~p~~~~~~~ 219 (229)
..++-.-++. .-+++..++.+|+..+ ++.+||-..+
T Consensus 242 r~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnFVfHq 297 (711)
T COG1747 242 RKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNFVFHQ 297 (711)
T ss_pred HHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCceEEec
Confidence 7776555421 1234677788888887 7878876554
No 296
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.80 E-value=0.75 Score=36.73 Aligned_cols=140 Identities=13% Similarity=-0.007 Sum_probs=96.0
Q ss_pred cCCchHHHHHHHHHHHHHhh---hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc------
Q psy13014 12 KNPSFLYTIYFSCFILFILF---SEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN------ 82 (229)
Q Consensus 12 ~~p~~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------ 82 (229)
.+..++.+.+.+|..+..-. .+..+|..+|+++... ..+.-......+|..+..-.
T Consensus 104 a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~---------------g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 104 AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL---------------GNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc---------------CChhHHHHHHHHHHHHHcChhhhccc
Confidence 34566777788887777631 3677777777766521 01111334566666665531
Q ss_pred -CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhc----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy13014 83 -QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS----LEKPDQSILACSKAITLNPSYLKVYQRRARLY 157 (229)
Q Consensus 83 -~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 157 (229)
+...|...|.++-... + +.+...+|.+ |.. ..++.+|+.+|.++-+... ..+.+.++ ++
T Consensus 169 ~~~~~A~~~~~~aa~~~--~-----~~a~~~lg~~------y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~ 232 (292)
T COG0790 169 YDDKKALYLYRKAAELG--N-----PDAQLLLGRM------YEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LM 232 (292)
T ss_pred HHHHhHHHHHHHHHHhc--C-----HHHHHHHHHH------HHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HH
Confidence 2347888888888875 4 7888999988 644 4589999999999999877 88889999 66
Q ss_pred Hhcc---------------cHHHHHHHHHHHHHhCCCcHH
Q psy13014 158 QQSD---------------KLDEALADYQKILELDPNNRD 182 (229)
Q Consensus 158 ~~~~---------------~~~~A~~~~~~al~~~p~~~~ 182 (229)
...| +...|..++.++....+....
T Consensus 233 ~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 272 (292)
T COG0790 233 YLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNAC 272 (292)
T ss_pred HhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHH
Confidence 6555 777788888777766655443
No 297
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.76 E-value=0.014 Score=46.50 Aligned_cols=91 Identities=8% Similarity=0.049 Sum_probs=75.1
Q ss_pred HHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHH-HHHHHHhcccHHHHHH
Q psy13014 90 KYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQR-RARLYQQSDKLDEALA 168 (229)
Q Consensus 90 ~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~~~~~~A~~ 168 (229)
.|.++-...|++ +..|...+.. ..+.+.|.+--..|..+++.+|.+++.|.. -+.-+...++++.+..
T Consensus 95 ~~~R~tnkff~D-----~k~w~~y~~Y------~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra 163 (435)
T COG5191 95 ELYRSTNKFFND-----PKIWSQYAAY------VIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRA 163 (435)
T ss_pred eeehhhhcCCCC-----cHHHHHHHHH------HHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHH
Confidence 345555556777 8888887777 666778888889999999999999999887 4566778899999999
Q ss_pred HHHHHHHhCCCcHHHHHHhccCc
Q psy13014 169 DYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 169 ~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.|.+++..+|++|..|...-++.
T Consensus 164 ~f~~glR~N~~~p~iw~eyfr~E 186 (435)
T COG5191 164 MFLKGLRMNSRSPRIWIEYFRME 186 (435)
T ss_pred HHHhhhccCCCCchHHHHHHHHH
Confidence 99999999999999998766554
No 298
>KOG0529|consensus
Probab=95.75 E-value=0.57 Score=38.97 Aligned_cols=171 Identities=17% Similarity=0.169 Sum_probs=111.0
Q ss_pred hhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHHHHccC--H
Q psy13014 8 QELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLF-YLFCSQKLEQTAISLKDEGNALFRLNQ--W 84 (229)
Q Consensus 8 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~--~ 84 (229)
+.++.||+...++-..-.++....-.. ..+..++. ..+...+. ...+....|+.-.+|+....++.+.+. +
T Consensus 54 ~ll~~npe~~t~wN~Rr~~~~~r~~~~--~~~~~ek~----~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~ 127 (421)
T KOG0529|consen 54 ELLEKNPEFYTVWNYRRLIIEERLTRA--QLEPLEKQ----ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDW 127 (421)
T ss_pred HHHhhCchhhhhhhhHHHHHHHhhhhh--cCCHHHHH----HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchH
Confidence 456788888887766544444331210 01111110 01111111 112336778888999999998887654 6
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh-----
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ----- 159 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----- 159 (229)
..-+...+++++.+|.+ -.+|..+=.+++.+ -...+...+-+++..++|.-++.|-.+|.....++..
T Consensus 128 ~~EL~lcek~L~~D~RN-----fh~W~YRRfV~~~~--~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~ 200 (421)
T KOG0529|consen 128 NTELQLCEKALKQDPRN-----FHAWHYRRFVVEQA--ERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKE 200 (421)
T ss_pred HHHHHHHHHHHhcCccc-----ccchHHHHHHHHHH--hcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhcccc
Confidence 88889999999999998 66666655441100 1111235677899999999999999999999888772
Q ss_pred -cc------cHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 160 -SD------KLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 160 -~~------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.| -...-++....|+-.+|+|..+|...-++.
T Consensus 201 ~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl 239 (421)
T KOG0529|consen 201 ADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLL 239 (421)
T ss_pred ccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhh
Confidence 23 245667788889999999999887655554
No 299
>KOG3807|consensus
Probab=95.75 E-value=0.87 Score=37.06 Aligned_cols=172 Identities=12% Similarity=0.030 Sum_probs=100.6
Q ss_pred hhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH-hh---h----hh-hhHHHHHHHHHHHHHH
Q psy13014 7 QQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLF-YL---F----CS-QKLEQTAISLKDEGNA 77 (229)
Q Consensus 7 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~---~----~~-~~~~~~~~~~~~~g~~ 77 (229)
.++|++||+...++.+++.--. .-+.+|...+++++........... .+ . .. .+..-..-+-..+++|
T Consensus 208 ~~ALeIN~eCA~AyvLLAEEEa---~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMC 284 (556)
T KOG3807|consen 208 YQALEINNECATAYVLLAEEEA---TTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMC 284 (556)
T ss_pred HHHHhcCchhhhHHHhhhhhhh---hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHH
Confidence 3588999999999888875433 2355666677666655432222111 00 0 00 0111122345689999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Q psy13014 78 LFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN-PSYLKVYQRRARL 156 (229)
Q Consensus 78 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 156 (229)
..++|+..+|++.+....+-.|-.. ...++-++-.+ +..++-|......+.+-=.+. |.++...+.-|..
T Consensus 285 ARklGrlrEA~K~~RDL~ke~pl~t---~lniheNLiEa------lLE~QAYADvqavLakYDdislPkSA~icYTaALL 355 (556)
T KOG3807|consen 285 ARKLGRLREAVKIMRDLMKEFPLLT---MLNIHENLLEA------LLELQAYADVQAVLAKYDDISLPKSAAICYTAALL 355 (556)
T ss_pred HHHhhhHHHHHHHHHHHhhhccHHH---HHHHHHHHHHH------HHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHH
Confidence 9999999999999999988877431 24456666666 555555544433333322221 4444333322211
Q ss_pred H-------------Hhcc---cHHHHHHHHHHHHHhCCCcHHHHHHhccC
Q psy13014 157 Y-------------QQSD---KLDEALADYQKILELDPNNRDAYVATKVS 190 (229)
Q Consensus 157 ~-------------~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 190 (229)
- .+.| --..|++.+.++++.+|..+.....+..+
T Consensus 356 K~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~ksl 405 (556)
T KOG3807|consen 356 KTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMKSL 405 (556)
T ss_pred HHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHHHhc
Confidence 1 1111 12358999999999999998877766544
No 300
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.73 E-value=0.47 Score=33.85 Aligned_cols=86 Identities=7% Similarity=-0.158 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHH
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLK 148 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (229)
..+...........+.+++...+...--+.|+. +.+-..-|.+ +...|++.+|+..++.+.+-.+..+.
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~-----~e~d~~dg~l------~i~rg~w~eA~rvlr~l~~~~~~~p~ 79 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNL-----KELDMFDGWL------LIARGNYDEAARILRELLSSAGAPPY 79 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-----cccchhHHHH------HHHcCCHHHHHHHHHhhhccCCCchH
Confidence 344455555566899999999999888899998 8888999999 99999999999999999998888888
Q ss_pred HHHHHHHHHHhcccHHH
Q psy13014 149 VYQRRARLYQQSDKLDE 165 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~ 165 (229)
.--.++.|+..+|+.+-
T Consensus 80 ~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 80 GKALLALCLNAKGDAEW 96 (153)
T ss_pred HHHHHHHHHHhcCChHH
Confidence 88889999999998764
No 301
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.72 E-value=0.11 Score=48.22 Aligned_cols=117 Identities=14% Similarity=0.018 Sum_probs=87.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHH-hhccCChHHHHHHHHHHHhcCCCcHHHH
Q psy13014 72 KDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLAS-YLSLEKPDQSILACSKAITLNPSYLKVY 150 (229)
Q Consensus 72 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (229)
.....++...+.|++|+..|++.-...|.- .+-.++.+..|..+..++. ......+++|+.-|++. .-.|.-+--|
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 555 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGR--KEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEY 555 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCc--ccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHH
Confidence 345567778899999999999999998864 1125677888877332222 11123588888888864 4457777789
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 151 QRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 151 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
...|.+|..+|+|++-++++.-|++..|.+|..-...-.+.
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLV 596 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 99999999999999999999999999999987655444443
No 302
>KOG2300|consensus
Probab=95.70 E-value=0.77 Score=39.15 Aligned_cols=144 Identities=6% Similarity=-0.028 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy13014 16 FLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEAL 95 (229)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 95 (229)
.+..++.+|...... +.++.|...|..++.... ...-.+.+-.++|..|...++-++ .|+-.-
T Consensus 366 ~~~ih~LlGlys~sv-~~~enAe~hf~~a~k~t~-------------~~dl~a~~nlnlAi~YL~~~~~ed---~y~~ld 428 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSV-NCYENAEFHFIEATKLTE-------------SIDLQAFCNLNLAISYLRIGDAED---LYKALD 428 (629)
T ss_pred HHHHHHHHhhHhhhc-chHHHHHHHHHHHHHhhh-------------HHHHHHHHHHhHHHHHHHhccHHH---HHHHHH
Confidence 345666777666666 777777777766653211 112244556678888988776555 444444
Q ss_pred HhCCCCCc-----hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHhcccHH
Q psy13014 96 RSCPRSCS-----VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY------LKVYQRRARLYQQSDKLD 164 (229)
Q Consensus 96 ~~~p~~~~-----~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~ 164 (229)
.+.|.+.. .....+++..|.. .+..+++.+|.....+.++..... .-.+..+|.+..-.|+..
T Consensus 429 ~i~p~nt~s~ssq~l~a~~~~v~glf------af~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~ 502 (629)
T KOG2300|consen 429 LIGPLNTNSLSSQRLEASILYVYGLF------AFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTV 502 (629)
T ss_pred hcCCCCCCcchHHHHHHHHHHHHHHH------HHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 45555322 2356778888888 899999999999999999875211 224666788888999999
Q ss_pred HHHHHHHHHHHhC---CCcHH
Q psy13014 165 EALADYQKILELD---PNNRD 182 (229)
Q Consensus 165 ~A~~~~~~al~~~---p~~~~ 182 (229)
++....+-++++. |+.+.
T Consensus 503 es~nmvrpamqlAkKi~Di~v 523 (629)
T KOG2300|consen 503 ESRNMVRPAMQLAKKIPDIPV 523 (629)
T ss_pred HHHhccchHHHHHhcCCCchH
Confidence 9988888887664 45443
No 303
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.62 E-value=0.04 Score=29.67 Aligned_cols=31 Identities=29% Similarity=0.295 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSC 98 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 98 (229)
+.++..+|.++...|++++|..++++++.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4578899999999999999999999999874
No 304
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.54 E-value=0.96 Score=36.09 Aligned_cols=133 Identities=12% Similarity=0.076 Sum_probs=94.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhC----CCCC----
Q psy13014 32 SEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN-QWSESLAKYNEALRSC----PRSC---- 102 (229)
Q Consensus 32 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~----p~~~---- 102 (229)
|+.+.|...+.|+-.... ..........+..+++.|......+ +++.|+..+++++++- +...
T Consensus 7 ~~~~~A~~~~~K~~~~~~--------~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~ 78 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLN--------SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPD 78 (278)
T ss_pred CCHHHHHHHHHHhhhHHh--------cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCc
Confidence 778888888877653321 1112334577789999999999999 9999999999999883 2111
Q ss_pred -chhhHHHHHhHhhhhhhhHHhhccCChH---HHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q psy13014 103 -SVSRAVFYANRSAALEKLASYLSLEKPD---QSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDP 178 (229)
Q Consensus 103 -~~~~~~~~~~lg~~~~~~~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 178 (229)
.+.+..++..++.+ +...+.++ +|....+.+-...|+.+..+...=.++...++.+++.+.+.+.+.--+
T Consensus 79 ~~elr~~iL~~La~~------~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 79 GSELRLSILRLLANA------YLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHHH------HHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 13466778888888 88877655 455566666666788888776655556568888888888888776543
No 305
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.36 E-value=0.11 Score=34.06 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=47.3
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCCc----hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 77 ALFRLNQWSESLAKYNEALRSCPRSCS----VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
.....++|..|++.+.+.+........ .....+..++|.+ +...|++++|+..+++++.+-
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~------~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAEL------HRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHH------HHHhCCHHHHHHHHHHHHHHH
Confidence 346789999999999888887543321 1234567788888 999999999999999998874
No 306
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.34 E-value=0.49 Score=35.06 Aligned_cols=106 Identities=8% Similarity=-0.018 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
.++.-+|..+... |+.+.|...|.+....- .........++.+-.+.+..+++.....+..++-..
T Consensus 37 ~~~~~l~~~~~~~-Gd~~~A~k~y~~~~~~~-------------~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKI-GDLEEALKAYSRARDYC-------------TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHh-hhHHHHHHHHHHHhhhc-------------CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4677889999999 99999999998765221 244567788889999999999999999999999877
Q ss_pred CCCCCchh-hHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 98 CPRSCSVS-RAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 98 ~p~~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
-....+.. +..+...-|.. ++..++|..|...|-.++.-.
T Consensus 103 ~~~~~d~~~~nrlk~~~gL~------~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 103 IEKGGDWERRNRLKVYEGLA------NLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HhccchHHHHHHHHHHHHHH------HHHhchHHHHHHHHHccCcCC
Confidence 54432211 23344555666 778999999999887776544
No 307
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.69 Score=36.42 Aligned_cols=75 Identities=21% Similarity=0.159 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHH
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKV 149 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (229)
...++=..+...++++.|..+.++.+.++|.+ +.-+..+|.+ |.++|-+..|++.+...++.-|+.+.+
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~d-----p~eirDrGli------Y~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPED-----PYEIRDRGLI------YAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCC-----hhhccCcHHH------HHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 34445556777888888888888888888888 7778888888 888888888888888888888888776
Q ss_pred HHHHHH
Q psy13014 150 YQRRAR 155 (229)
Q Consensus 150 ~~~la~ 155 (229)
-...+.
T Consensus 252 ~~ir~~ 257 (269)
T COG2912 252 EMIRAQ 257 (269)
T ss_pred HHHHHH
Confidence 554443
No 308
>KOG1258|consensus
Probab=95.27 E-value=1.3 Score=38.53 Aligned_cols=172 Identities=12% Similarity=0.044 Sum_probs=94.4
Q ss_pred hhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH----HHHHHHHHhhh---------------hhhhHHHHH
Q psy13014 8 QELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYI----QFIFHVLFYLF---------------CSQKLEQTA 68 (229)
Q Consensus 8 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~---------------~~~~~~~~~ 68 (229)
-+--.++.....|......-... |+++.....|++++... .++...+.|+. +.--.+..+
T Consensus 288 hvkpl~~aql~nw~~yLdf~i~~-g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~ 366 (577)
T KOG1258|consen 288 HVKPLDQAQLKNWRYYLDFEITL-GDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP 366 (577)
T ss_pred ccCcccHHHHHHHHHHhhhhhhc-ccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc
Confidence 33334445555555554545555 77777777776665321 12222222221 111223444
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHH---HHHHHHhcCCC
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL---ACSKAITLNPS 145 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~---~~~~al~~~p~ 145 (229)
.+....+...-..|++..|..++++.....|+. ..+-...... ....|+.+.+-. .+.....-..+
T Consensus 367 ~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~-----v~~~l~~~~~------e~r~~~~~~~~~~~~l~s~~~~~~~~ 435 (577)
T KOG1258|consen 367 IIHLLEARFEESNGNFDDAKVILQRIESEYPGL-----VEVVLRKINW------ERRKGNLEDANYKNELYSSIYEGKEN 435 (577)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhhCCch-----hhhHHHHHhH------HHHhcchhhhhHHHHHHHHhcccccC
Confidence 555566666667778888888888777777665 5444444445 556666666653 22222211111
Q ss_pred ---cHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 146 ---YLKVYQRRARLYQQ-SDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 146 ---~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
....+...+..... .++.+.|...+.+++...|.+...+..+..+.
T Consensus 436 ~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 436 NGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFE 485 (577)
T ss_pred cchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHH
Confidence 12334444444333 35677788888888888888887776666554
No 309
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.21 E-value=1.5 Score=36.56 Aligned_cols=85 Identities=16% Similarity=0.087 Sum_probs=54.7
Q ss_pred HHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHH-HHHHHHHHHHhCCCcHHHHHH
Q psy13014 108 VFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDE-ALADYQKILELDPNNRDAYVA 186 (229)
Q Consensus 108 ~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~ 186 (229)
..-..-+.. ++..|+..++-..++.+.+..|+- ..+ +..++...|+... -.+-.++..++.|++.+....
T Consensus 264 Paav~AAra------lf~d~~~rKg~~ilE~aWK~ePHP-~ia--~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~ 334 (531)
T COG3898 264 PAAVVAARA------LFRDGNLRKGSKILETAWKAEPHP-DIA--LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLA 334 (531)
T ss_pred hHHHHHHHH------HHhccchhhhhhHHHHHHhcCCCh-HHH--HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHH
Confidence 344445566 999999999999999999999853 321 1223334555322 234445566889999998887
Q ss_pred hccCchHHHhhhhhcc
Q psy13014 187 TKVSPDLKLKEKNGAT 202 (229)
Q Consensus 187 l~~~~~~~~~~~~~a~ 202 (229)
++... ...+++-.|.
T Consensus 335 va~aA-lda~e~~~AR 349 (531)
T COG3898 335 VAEAA-LDAGEFSAAR 349 (531)
T ss_pred HHHHH-HhccchHHHH
Confidence 77665 4444444443
No 310
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.16 E-value=0.042 Score=29.46 Aligned_cols=29 Identities=28% Similarity=0.611 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
.++..+|.+-...++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35677788888888888888888888765
No 311
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=95.12 E-value=0.11 Score=27.54 Aligned_cols=32 Identities=28% Similarity=0.239 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcccHHHHHHH--HHHHHHhCCC
Q psy13014 148 KVYQRRARLYQQSDKLDEALAD--YQKILELDPN 179 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~--~~~al~~~p~ 179 (229)
+.++.+|..+...|++++|+.. |.-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3456666777777777777777 3356565554
No 312
>KOG2300|consensus
Probab=95.08 E-value=1.9 Score=36.88 Aligned_cols=103 Identities=15% Similarity=0.088 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
....+.+...+|..+..-+.++.|...|..+.+....- +..+.+-.++|.. |...++-+.--+..+ .+.
T Consensus 363 r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~--dl~a~~nlnlAi~------YL~~~~~ed~y~~ld---~i~ 431 (629)
T KOG2300|consen 363 RAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI--DLQAFCNLNLAIS------YLRIGDAEDLYKALD---LIG 431 (629)
T ss_pred HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH--HHHHHHHHhHHHH------HHHhccHHHHHHHHH---hcC
Confidence 34677889999999999999999999999999985432 2235667788999 988776555333333 244
Q ss_pred CCc----------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 144 PSY----------LKVYQRRARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 144 p~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
|.+ ..+++..|...+.++++.||...+.+.++..
T Consensus 432 p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 432 PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 443 3457778888899999999999999999887
No 313
>KOG1310|consensus
Probab=95.08 E-value=0.031 Score=47.66 Aligned_cols=96 Identities=20% Similarity=0.098 Sum_probs=81.3
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhh
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQS---DKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKN 199 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 199 (229)
.+..+....|+.+|.+++...|.....+.+.+.++.+. |+.-.|+.....+++++|....+++.+++++ ..++...
T Consensus 384 ~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL-~el~r~~ 462 (758)
T KOG1310|consen 384 GLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARAL-NELTRYL 462 (758)
T ss_pred hhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHH-HHHhhHH
Confidence 45566678999999999999999999999999998865 4667799999999999999999999999999 8899999
Q ss_pred hccccccccc-ccCCCccccc
Q psy13014 200 GATKLSPDVF-LHPGQPQIQH 219 (229)
Q Consensus 200 ~a~~~~~~~~-~~p~~~~~~~ 219 (229)
+|+.....+. ..|.++..+.
T Consensus 463 eal~~~~alq~~~Ptd~a~~~ 483 (758)
T KOG1310|consen 463 EALSCHWALQMSFPTDVARQN 483 (758)
T ss_pred HhhhhHHHHhhcCchhhhhhh
Confidence 9988887777 6665554443
No 314
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=0.13 Score=40.46 Aligned_cols=68 Identities=19% Similarity=0.166 Sum_probs=62.4
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccC
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 190 (229)
+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|++.+...++.-|+++.+-.....+
T Consensus 191 ~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 191 LLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999876554444
No 315
>KOG2396|consensus
Probab=95.03 E-value=0.28 Score=41.80 Aligned_cols=80 Identities=8% Similarity=0.096 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCC-hHHHHHHHHHHH
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEK-PDQSILACSKAI 140 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~-~~~A~~~~~~al 140 (229)
...+.+...|......+.+.+.+.+--..|.+++...|++ +++|..-|.- .+..+. .+.|.+.+.+++
T Consensus 99 ~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~-----~dLWI~aA~w------efe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 99 NRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNN-----PDLWIYAAKW------EFEINLNIESARALFLRGL 167 (568)
T ss_pred HhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC-----chhHHhhhhh------HHhhccchHHHHHHHHHHh
Confidence 3445577888888888888888999999999999999999 9999998888 777665 899999999999
Q ss_pred hcCCCcHHHHHH
Q psy13014 141 TLNPSYLKVYQR 152 (229)
Q Consensus 141 ~~~p~~~~~~~~ 152 (229)
..+|+++..|..
T Consensus 168 R~npdsp~Lw~e 179 (568)
T KOG2396|consen 168 RFNPDSPKLWKE 179 (568)
T ss_pred hcCCCChHHHHH
Confidence 999999987654
No 316
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.95 E-value=0.2 Score=39.91 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=82.9
Q ss_pred HHHccCHHHHHHHHHHHHHhCC-CC--CchhhHHHHHhHhhhhhhhHHhhccC-ChHHHHHHHHHHHhc----CC---Cc
Q psy13014 78 LFRLNQWSESLAKYNEALRSCP-RS--CSVSRAVFYANRSAALEKLASYLSLE-KPDQSILACSKAITL----NP---SY 146 (229)
Q Consensus 78 ~~~~~~~~~A~~~~~~al~~~p-~~--~~~~~~~~~~~lg~~~~~~~~~~~~~-~~~~A~~~~~~al~~----~p---~~ 146 (229)
...+|+++.|..++.++-...+ .+ .....+..+++.|.. ....+ +++.|+.+++++.++ .+ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~------l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~ 76 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS------LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLS 76 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH------HHHcCCChHHHHHHHHHHHHHHHhhhhccccC
Confidence 3578999999999999977652 22 123356677777777 88888 999999999999887 21 11
Q ss_pred -------HHHHHHHHHHHHhcccHH---HHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 147 -------LKVYQRRARLYQQSDKLD---EALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 147 -------~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
..++..++.++...+.++ +|...++.+-.-.|+.+..+...-.+. .+..+..+..+.+.+++
T Consensus 77 ~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il-~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 77 PDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEIL-LKSFDEEEYEEILMRMI 148 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH-hccCChhHHHHHHHHHH
Confidence 346777899998887654 566666666667788777663332233 22333444444444444
No 317
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.93 E-value=1.5 Score=37.12 Aligned_cols=136 Identities=15% Similarity=0.056 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHH--HHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy13014 16 FLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQ--TAISLKDEGNALFRLNQWSESLAKYNE 93 (229)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~A~~~~~~ 93 (229)
....+...|+++... +++.+|...|.+...... ..|. .-+.+-..-.-.+-.++.+.-......
T Consensus 5 ~~~llc~Qgf~Lqkq-~~~~esEkifskI~~e~~-------------~~~f~lkeEvl~grilnAffl~nld~Me~~l~~ 70 (549)
T PF07079_consen 5 RQYLLCFQGFILQKQ-KKFQESEKIFSKIYDEKE-------------SSPFLLKEEVLGGRILNAFFLNNLDLMEKQLME 70 (549)
T ss_pred HHHHHHHhhHHHHHH-hhhhHHHHHHHHHHHHhh-------------cchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHH
Confidence 345567778999888 999999999987763221 1110 001222222223445666666666666
Q ss_pred HHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC----CCc---------HH--HHHHHHHHHH
Q psy13014 94 ALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN----PSY---------LK--VYQRRARLYQ 158 (229)
Q Consensus 94 al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p~~---------~~--~~~~la~~~~ 158 (229)
.-+..|.. +.+....|.. .++.+.|.+|++.+..--+.- |.. +. .-.-.|.++.
T Consensus 71 l~~~~~~s-----~~l~LF~~L~------~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLI 139 (549)
T PF07079_consen 71 LRQQFGKS-----AYLPLFKALV------AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLI 139 (549)
T ss_pred HHHhcCCc-----hHHHHHHHHH------HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHH
Confidence 66777877 8888889999 999999999998876544331 111 11 1223588899
Q ss_pred hcccHHHHHHHHHHHHHh
Q psy13014 159 QSDKLDEALADYQKILEL 176 (229)
Q Consensus 159 ~~~~~~~A~~~~~~al~~ 176 (229)
.+|++.++...+.+.+..
T Consensus 140 e~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 140 ETGRFSEGRAILNRIIER 157 (549)
T ss_pred hcCCcchHHHHHHHHHHH
Confidence 999999999999887744
No 318
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.89 E-value=0.062 Score=42.55 Aligned_cols=60 Identities=22% Similarity=0.037 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 132 SILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 132 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
|+.+|.+|+.+.|.+...|+.+|.+....|+.=.|+-+|-+++......+.+..++..+.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf 60 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLF 60 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999988777788999999887
No 319
>KOG1550|consensus
Probab=94.83 E-value=0.62 Score=41.06 Aligned_cols=130 Identities=11% Similarity=-0.020 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHH-------hCCCCCchhhHHHHHhHhhhhhhhHHhhccC---
Q psy13014 63 KLEQTAISLKDEGNALFR-----LNQWSESLAKYNEALR-------SCPRSCSVSRAVFYANRSAALEKLASYLSLE--- 127 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~-----~~~~~~A~~~~~~al~-------~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~--- 127 (229)
....+..+...+|.++.. .++.+.|+.++..+.. .. . +.+.+.+|.+ |.+..
T Consensus 239 a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~-----~~a~~~lg~~------Y~~g~~~~ 305 (552)
T KOG1550|consen 239 AKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--L-----PPAQYGLGRL------YLQGLGVE 305 (552)
T ss_pred HhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--C-----CccccHHHHH------HhcCCCCc
Confidence 334566667777777765 4789999999999977 22 2 5567788888 76643
Q ss_pred --ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHhCCCcHHHHHHhccCchH---HHhhhh
Q psy13014 128 --KPDQSILACSKAITLNPSYLKVYQRRARLYQQSD---KLDEALADYQKILELDPNNRDAYVATKVSPDL---KLKEKN 199 (229)
Q Consensus 128 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~~~~~~ 199 (229)
+++.|+.+|.++-... ++.+.+.+|.++..-. ++..|.++|..|... .+..+.+.++.|+.. -..+..
T Consensus 306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHH
Confidence 7788999999998864 5667788899988766 678999999988765 467788888888741 112355
Q ss_pred hccccccccc
Q psy13014 200 GATKLSPDVF 209 (229)
Q Consensus 200 ~a~~~~~~~~ 209 (229)
.|...+.++.
T Consensus 382 ~A~~~~k~aA 391 (552)
T KOG1550|consen 382 LAFAYYKKAA 391 (552)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 320
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.76 E-value=0.23 Score=32.53 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=44.8
Q ss_pred hhccCChHHHHHHHHHHHhcC----CC-----cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q psy13014 123 YLSLEKPDQSILACSKAITLN----PS-----YLKVYQRRARLYQQSDKLDEALADYQKILELDP 178 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~----p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 178 (229)
....|+|..|++.+.+..... .. ...++.++|.++...|++++|+..+++++++-.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 457899999988777776543 21 145788899999999999999999999998754
No 321
>KOG1914|consensus
Probab=94.73 E-value=1.6 Score=37.80 Aligned_cols=86 Identities=9% Similarity=0.097 Sum_probs=63.6
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCcH-HHHHHhccCchHHHhhhh
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL--DPNNR-DAYVATKVSPDLKLKEKN 199 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~-~~~~~l~~~~~~~~~~~~ 199 (229)
|.-.++..-|...|+-.++..++.+..-.....-+..+++-..|...|++++.. .|+.. +.|..+-.-. .+.|++.
T Consensus 411 y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE-S~vGdL~ 489 (656)
T KOG1914|consen 411 YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE-SNVGDLN 489 (656)
T ss_pred HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH-HhcccHH
Confidence 667889999999999999999999998888888899999999999999999887 44322 3444333222 5566666
Q ss_pred hccccccccc
Q psy13014 200 GATKLSPDVF 209 (229)
Q Consensus 200 ~a~~~~~~~~ 209 (229)
..++.-.+..
T Consensus 490 si~~lekR~~ 499 (656)
T KOG1914|consen 490 SILKLEKRRF 499 (656)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 322
>KOG4151|consensus
Probab=94.73 E-value=0.14 Score=45.63 Aligned_cols=115 Identities=29% Similarity=0.462 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
..+......|+.+++.+++..|...|..++.+-|.+ ....+....+.+.|++ ...++++..++..++-++...|.
T Consensus 51 ~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~-~~~~a~~~~~~~s~~m----~~~l~~~~~~~~E~~la~~~~p~ 125 (748)
T KOG4151|consen 51 SRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKD-HHVVATLRSNQASCYM----QLGLGEYPKAIPECELALESQPR 125 (748)
T ss_pred HHHHHHHhhhhHHhhhhhhhccchhhhhhheecccc-chhhhhHHHHHHHHHh----hcCccchhhhcCchhhhhhccch
Confidence 344456678899999999999999999999998843 2334666777777722 34567999999999999999999
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHH
Q psy13014 146 YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 185 (229)
...++...+.+|..+++++-|++.+.-....+|.+..+.-
T Consensus 126 i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 126 ISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 9999999999999999999999998888899999865543
No 323
>KOG2422|consensus
Probab=94.52 E-value=3 Score=36.45 Aligned_cols=166 Identities=15% Similarity=0.113 Sum_probs=108.5
Q ss_pred CccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh--------hhhHHHHHHHHHHH
Q psy13014 3 PLPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFC--------SQKLEQTAISLKDE 74 (229)
Q Consensus 3 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 74 (229)
|.-..-.|.-.|-+...+..++.+.... |+.+.+.+..++++..++...+....+.. .........+++..
T Consensus 270 ~n~v~~lL~ssPYHvdsLLqva~~~r~q-gD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~ 348 (665)
T KOG2422|consen 270 PNNVLILLISSPYHVDSLLQVADIFRFQ-GDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRY 348 (665)
T ss_pred CcceeeeeccCCcchhHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHH
Confidence 3334445667799999999999999988 99999999999999887766654442211 11223333455556
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC-CCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHH-----HhcCCCcHH
Q psy13014 75 GNALFRLNQWSESLAKYNEALRSCPR-SCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKA-----ITLNPSYLK 148 (229)
Q Consensus 75 g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~a-----l~~~p~~~~ 148 (229)
-..+.+.|.+.-|.+...-.++++|. + +.....+-..+ .++.++|+=-|..++.. +..-|+.+.
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eD-----Pl~~l~~ID~~-----ALrareYqwiI~~~~~~e~~n~l~~~PN~~y 418 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSED-----PLGILYLIDIY-----ALRAREYQWIIELSNEPENMNKLSQLPNFGY 418 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCC-----chhHHHHHHHH-----HHHHHhHHHHHHHHHHHHhhccHhhcCCchH
Confidence 66677899999999999999999998 4 44433333330 34556666666666554 333354322
Q ss_pred HHHHHHHHHHhccc---HHHHHHHHHHHHHhCCCc
Q psy13014 149 VYQRRARLYQQSDK---LDEALADYQKILELDPNN 180 (229)
Q Consensus 149 ~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~ 180 (229)
-..+|..|..... -+.|...+.+|+...|..
T Consensus 419 -S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~v 452 (665)
T KOG2422|consen 419 -SLALARFFLRKNEEDDRQSALNALLQALKHHPLV 452 (665)
T ss_pred -HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcHH
Confidence 2223444443333 567888999999988843
No 324
>KOG4814|consensus
Probab=94.48 E-value=1.4 Score=38.96 Aligned_cols=69 Identities=14% Similarity=0.140 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
.....+.....++.||....+.++|++++++|-+.+|.+ +-.-..+-.+ ....+..++|+....+....
T Consensus 389 ~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~-----~l~q~~~~~~------~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 389 YSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQS-----PLCQLLMLQS------FLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccc-----HHHHHHHHHH------HHHhcchHHHHHHHHHHHhh
Confidence 444557788899999999999999999999999999998 7776667677 77889999999888766544
No 325
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.45 E-value=0.06 Score=43.06 Aligned_cols=82 Identities=10% Similarity=0.139 Sum_probs=70.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhH-hhhhhhhHHhhccCChHHHHHHHHHH
Q psy13014 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANR-SAALEKLASYLSLEKPDQSILACSKA 139 (229)
Q Consensus 61 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~l-g~~~~~~~~~~~~~~~~~A~~~~~~a 139 (229)
....+.++..|...+......+.|.+--..|.++++..|.+ .++|..- +.- +...++.+.+...+.++
T Consensus 100 tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n-----vdlWI~~c~~e------~~~~ani~s~Ra~f~~g 168 (435)
T COG5191 100 TNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN-----VDLWIYCCAFE------LFEIANIESSRAMFLKG 168 (435)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----ceeeeeeccch------hhhhccHHHHHHHHHhh
Confidence 34556788889888888888999999999999999999999 8888874 444 77889999999999999
Q ss_pred HhcCCCcHHHHHHH
Q psy13014 140 ITLNPSYLKVYQRR 153 (229)
Q Consensus 140 l~~~p~~~~~~~~l 153 (229)
+..+|.++..|+..
T Consensus 169 lR~N~~~p~iw~ey 182 (435)
T COG5191 169 LRMNSRSPRIWIEY 182 (435)
T ss_pred hccCCCCchHHHHH
Confidence 99999999877654
No 326
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.45 E-value=0.21 Score=26.38 Aligned_cols=32 Identities=9% Similarity=0.027 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHH--HHHHHHhCCC
Q psy13014 69 ISLKDEGNALFRLNQWSESLAK--YNEALRSCPR 100 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~--~~~al~~~p~ 100 (229)
+.++.+|..+.++|++++|+.. |.-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4678899999999999999999 4488777765
No 327
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.34 E-value=0.19 Score=39.72 Aligned_cols=62 Identities=10% Similarity=0.167 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy13014 87 SLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ 159 (229)
Q Consensus 87 A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 159 (229)
|..+|.+|+.+.|.+ ...|+.+|.+ ....|+.-.|+-+|-+++-.....+.+.-++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~-----G~p~nQLAvl------~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN-----GNPYNQLAVL------ASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTB-----SHHHHHHHHH------HHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC-----CCcccchhhh------hccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 678999999999999 9999999999 9999999999999999998776668888888888877
No 328
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.31 E-value=0.62 Score=29.33 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
......|.-++..++..+|+..+.++++..++. ..+..+.-.+..+ |...|+|.+.+++.-.=+.
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~--~~rf~~lG~l~qA------~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDR--EDRFRVLGYLIQA------HMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCCh--HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 345567888889999999999999999998876 1234444555566 7888999988887655443
No 329
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.28 E-value=0.18 Score=42.85 Aligned_cols=115 Identities=10% Similarity=0.133 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
...|..+......+.+....|.|+.+...+.-+-..-... .....-+-.. .+.+++++.|.....-.+.
T Consensus 317 r~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~-----~~~~~~~~r~------~~~l~r~~~a~s~a~~~l~ 385 (831)
T PRK15180 317 RNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT-----DSTLRCRLRS------LHGLARWREALSTAEMMLS 385 (831)
T ss_pred HhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC-----chHHHHHHHh------hhchhhHHHHHHHHHHHhc
Confidence 4556666667778888999999999998876655543332 2223333344 7788999999998888887
Q ss_pred cCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHh
Q psy13014 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVAT 187 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 187 (229)
..-.+++...--|.....+|-+++|...+++.+.++|.....|.+.
T Consensus 386 ~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~ 431 (831)
T PRK15180 386 NEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNF 431 (831)
T ss_pred cccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceee
Confidence 7777777777677777888899999999999999988766555443
No 330
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.23 E-value=0.43 Score=34.07 Aligned_cols=74 Identities=12% Similarity=0.016 Sum_probs=64.4
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhh
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKE 197 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 197 (229)
-...++.+.+...++..--+.|+.+..-..-|.++...|++.+|+..++...+-.+..+.....++.|+ .-+++
T Consensus 20 aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL-~al~D 93 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL-NAKGD 93 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH-HhcCC
Confidence 455889999999999888899999999999999999999999999999999999988888887788776 44443
No 331
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.15 E-value=0.8 Score=31.46 Aligned_cols=88 Identities=13% Similarity=-0.001 Sum_probs=58.6
Q ss_pred ccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccC
Q psy13014 4 LPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQ 83 (229)
Q Consensus 4 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 83 (229)
+|-..+...+--+...+..++-.+..+ |+++++....++++.......... .......+.+.+..|..+...|+
T Consensus 42 iP~eEaFDh~GFDA~chA~Ls~A~~~L-gry~e~L~sA~~aL~YFNRRGEL~-----qdeGklWIaaVfsra~Al~~~Gr 115 (144)
T PF12968_consen 42 IPAEEAFDHDGFDAFCHAGLSGALAGL-GRYDECLQSADRALRYFNRRGELH-----QDEGKLWIAAVFSRAVALEGLGR 115 (144)
T ss_dssp S-TTS---HHHHHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHHHHH--TT-----STHHHHHHHHHHHHHHHHHHTT-
T ss_pred CChHhhcccccHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHhhccccc-----cccchhHHHHHHHHHHHHHhcCC
Confidence 344555555555677788888889999 999999887776664443332222 12233556678899999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy13014 84 WSESLAKYNEALRS 97 (229)
Q Consensus 84 ~~~A~~~~~~al~~ 97 (229)
.++|+..|+.+.++
T Consensus 116 ~~eA~~~fr~agEM 129 (144)
T PF12968_consen 116 KEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999998765
No 332
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.01 E-value=0.13 Score=27.60 Aligned_cols=30 Identities=13% Similarity=0.190 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSC 98 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 98 (229)
.++..+|.+....++|++|+.-|.+++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999874
No 333
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=0.46 Score=41.24 Aligned_cols=120 Identities=17% Similarity=0.050 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHh--HhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhccc
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYAN--RSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK 162 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~--lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 162 (229)
.-++..+...+.++|.+ +.++.. +... +...+....+......++..+|++..++.++|.+....|.
T Consensus 48 ~~~~~a~~~~~~~~~~~-----~~llla~~lsi~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~ 116 (620)
T COG3914 48 ALAIYALLLGIAINDVN-----PELLLAAFLSIL------LAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGL 116 (620)
T ss_pred hHHHHHHHccCccCCCC-----HHHHHHHHHHhh------ccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhh
Confidence 33666666677777776 444222 5777 7888999899999999999999999999999999998888
Q ss_pred HHHHHHHHHH-HHHhCCCcHHHHHHhccCch-----HHHhhhhhccccccccc-ccCCCc
Q psy13014 163 LDEALADYQK-ILELDPNNRDAYVATKVSPD-----LKLKEKNGATKLSPDVF-LHPGQP 215 (229)
Q Consensus 163 ~~~A~~~~~~-al~~~p~~~~~~~~l~~~~~-----~~~~~~~~a~~~~~~~~-~~p~~~ 215 (229)
.-.+...+.. +....|.+......+-.++. .-++.-.++.....++. +.|++.
T Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~ 176 (620)
T COG3914 117 QFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYP 176 (620)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhh
Confidence 7777766666 89999999988887755541 22333333444444444 555543
No 334
>KOG0529|consensus
Probab=93.74 E-value=0.62 Score=38.74 Aligned_cols=102 Identities=18% Similarity=0.217 Sum_probs=82.7
Q ss_pred HccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccC--ChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy13014 80 RLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE--KPDQSILACSKAITLNPSYLKVYQRRARLY 157 (229)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 157 (229)
+....+.-+.+...+++.+|++ ..+|+.+..+ +.+.+ ++..-++.++++++.+|.+-.+|...=.+.
T Consensus 87 k~~~ld~eL~~~~~~L~~npks-----Y~aW~hR~w~------L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~ 155 (421)
T KOG0529|consen 87 KQALLDEELKYVESALKVNPKS-----YGAWHHRKWV------LQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVV 155 (421)
T ss_pred HHHhhHHHHHHHHHHHHhCchh-----HHHHHHHHHH------HHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHH
Confidence 3345777888899999999999 9999999999 66554 467889999999999999988777665555
Q ss_pred Hhccc----HHHHHHHHHHHHHhCCCcHHHHHHhccCch
Q psy13014 158 QQSDK----LDEALADYQKILELDPNNRDAYVATKVSPD 192 (229)
Q Consensus 158 ~~~~~----~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 192 (229)
..... ..+-++..++++..++++-.+|.....+..
T Consensus 156 ~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 156 EQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 44433 466788888999999999999998887774
No 335
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.62 E-value=0.098 Score=25.28 Aligned_cols=23 Identities=22% Similarity=0.021 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcccHHHHHHHHH
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQ 171 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~ 171 (229)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566666666666666666553
No 336
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.55 E-value=0.64 Score=37.00 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=56.7
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
..++..++.. +...++++.++..+++.+..+|-+...|..+-.+|...|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~------~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEA------LIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHH------HHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4445555666 888999999999999999999999999999999999999999999999988764
No 337
>KOG2041|consensus
Probab=93.28 E-value=1.5 Score=39.28 Aligned_cols=85 Identities=15% Similarity=0.201 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
.+...-.++.++|..+..+..|++|.++|.+.-. .-+...| ++.+.+|++ ++.....
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-------------~e~~~ec------ly~le~f~~----LE~la~~ 847 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-------------TENQIEC------LYRLELFGE----LEVLART 847 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------hHhHHHH------HHHHHhhhh----HHHHHHh
Confidence 3455667899999999999999999999865422 2234455 556555555 3333333
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHH
Q psy13014 143 NPSYLKVYQRRARLYQQSDKLDEALADY 170 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (229)
-|++...+-.+|.++...|--++|++.|
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 4555555555666666666656555554
No 338
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=93.16 E-value=1 Score=37.37 Aligned_cols=86 Identities=17% Similarity=0.091 Sum_probs=68.3
Q ss_pred HHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc--------------C------------CCc-
Q psy13014 94 ALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL--------------N------------PSY- 146 (229)
Q Consensus 94 al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~--------------~------------p~~- 146 (229)
.++.+|-+ .+.+..++.+ +..+|+...|.+.+++|+-. + +.|
T Consensus 32 ll~~~PyH-----idtLlqls~v------~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR 100 (360)
T PF04910_consen 32 LLQKNPYH-----IDTLLQLSEV------YRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENR 100 (360)
T ss_pred HHHHCCCc-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccch
Confidence 36778988 9999999999 99999999999998888621 1 111
Q ss_pred --HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-cHHHHHHhccC
Q psy13014 147 --LKVYQRRARLYQQSDKLDEALADYQKILELDPN-NRDAYVATKVS 190 (229)
Q Consensus 147 --~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 190 (229)
-.++++....+.+.|-+.-|.++.+-.+++||. |+-.....-..
T Consensus 101 ~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~ 147 (360)
T PF04910_consen 101 QFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDY 147 (360)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHH
Confidence 236777888899999999999999999999999 77654443333
No 339
>KOG1258|consensus
Probab=93.14 E-value=2.6 Score=36.83 Aligned_cols=130 Identities=12% Similarity=0.043 Sum_probs=101.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHH
Q psy13014 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAI 140 (229)
Q Consensus 61 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al 140 (229)
....+.....|......-...|+++...-.|++++--.... ...|...+.- ....|+.+-|-..+..+.
T Consensus 290 kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y-----~efWiky~~~------m~~~~~~~~~~~~~~~~~ 358 (577)
T KOG1258|consen 290 KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY-----DEFWIKYARW------MESSGDVSLANNVLARAC 358 (577)
T ss_pred CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh-----HHHHHHHHHH------HHHcCchhHHHHHHHhhh
Confidence 34455666778888888889999999999999999888777 8889998888 777788888888888777
Q ss_pred hcC-CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcc
Q psy13014 141 TLN-PSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGAT 202 (229)
Q Consensus 141 ~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~ 202 (229)
++. |..+..+..-+..-...|++..|...+++..+--|+...+-.....+. .+.++.+.+.
T Consensus 359 ~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e-~r~~~~~~~~ 420 (577)
T KOG1258|consen 359 KIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWE-RRKGNLEDAN 420 (577)
T ss_pred hhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHH-HHhcchhhhh
Confidence 765 666777777888888899999999999999888888877665555554 4444444443
No 340
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.88 E-value=1 Score=35.87 Aligned_cols=67 Identities=16% Similarity=0.126 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
.....++..++..+...++++.++..+++.+..+|.+ -..|..+-.. |...|+...|+..|++.-+.
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~-----E~~~~~lm~~------y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYD-----EPAYLRLMEA------YLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccc-----hHHHHHHHHH------HHHcCCchHHHHHHHHHHHH
Confidence 3456788889999999999999999999999999998 8889999899 99999999999999887653
No 341
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.86 E-value=3.9 Score=37.52 Aligned_cols=132 Identities=11% Similarity=0.023 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
|......++..... .++.++.....+....++. .+........+...-..|.+....+++++|....+.++.
T Consensus 415 P~Lvll~aW~~~s~-~r~~ea~~li~~l~~~l~~-------~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~ 486 (894)
T COG2909 415 PRLVLLQAWLLASQ-HRLAEAETLIARLEHFLKA-------PMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV 486 (894)
T ss_pred chHHHHHHHHHHHc-cChHHHHHHHHHHHHHhCc-------CcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44445556666666 6777776666554432221 011112234445566678889999999999999999999
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC----CCc--HHHHHHHHHHHHhccc
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN----PSY--LKVYQRRARLYQQSDK 162 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p~~--~~~~~~la~~~~~~~~ 162 (229)
.-|......+..+...+|.+ ..-.|++++|..+...+.+.. .-. ..+.+..+.++...|+
T Consensus 487 ~L~~~~~~~r~~~~sv~~~a------~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 487 QLPEAAYRSRIVALSVLGEA------AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred hcccccchhhhhhhhhhhHH------HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence 98887666678889999999 999999999999988887762 222 3345556778888883
No 342
>KOG0985|consensus
Probab=92.83 E-value=2 Score=40.17 Aligned_cols=113 Identities=8% Similarity=0.059 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC-chhhHHHHHhHhhh--------------hhhhHH-hhccCCh
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSC-SVSRAVFYANRSAA--------------LEKLAS-YLSLEKP 129 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~lg~~--------------~~~~~~-~~~~~~~ 129 (229)
+++..+...-....+.|.|++-+.++..+-+...... +.....++...+.+ ....|. .+..+.|
T Consensus 1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y 1210 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMY 1210 (1666)
T ss_pred CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhh
Confidence 4555666677777778888888887777765533221 11111111111111 111121 5566677
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 130 DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 130 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
+.|.-.|.. ..-|-.+|..+..+|+|+.|+..-++|- +...|...+..|
T Consensus 1211 ~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAn-----s~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1211 EAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKAN-----STKTWKEVCFAC 1259 (1666)
T ss_pred HHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHH
Confidence 777666653 4457789999999999999999988773 344555554444
No 343
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.78 E-value=1.5 Score=27.70 Aligned_cols=53 Identities=17% Similarity=0.072 Sum_probs=41.8
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHH---HHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQ---RRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~---~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
++..++.++|+..+.++++..++.+.-+. .+..+|...|+|.+++.+.-.=+.
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999887766444 456678899999998877554443
No 344
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.70 E-value=1 Score=37.80 Aligned_cols=105 Identities=9% Similarity=-0.032 Sum_probs=72.8
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy13014 24 CFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCS--QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRS 101 (229)
Q Consensus 24 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 101 (229)
|...+.. ++|..|+.-|..+++........-..+... ....-...+--.+..||..+++.+-|+.+..+.|.++|.+
T Consensus 183 as~~yrq-k~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 183 ASSCYRQ-KKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHhh-HHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 4445566 777777777766654332111111101111 1122233456678899999999999999999999999998
Q ss_pred CchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHH
Q psy13014 102 CSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAI 140 (229)
Q Consensus 102 ~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al 140 (229)
..-+...|.| +..+.+|.+|...+--+.
T Consensus 262 -----frnHLrqAav------fR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 262 -----FRNHLRQAAV------FRRLERYSEAARSAMIAD 289 (569)
T ss_pred -----hhHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 8889999999 999999999987766554
No 345
>KOG1839|consensus
Probab=92.23 E-value=1.5 Score=41.62 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---CchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHH
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRS---CSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKA 139 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~a 139 (229)
..+..+..+..++..+...+++++|+..-.++.-+.... ........+.+++.. .+..++...|...+.++
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~------~f~~~~~~~al~~~~ra 1041 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALY------EFAVKNLSGALKSLNRA 1041 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHH------HHhccCccchhhhHHHH
Confidence 557888999999999999999999999988887664321 112247788899988 88889999999999888
Q ss_pred Hhc--------CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 140 ITL--------NPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 140 l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
..+ .|.-.....+++.++...++++.|+.+.+.|++.+
T Consensus 1042 ~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1042 LKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred HHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 765 35555667889999999999999999999999864
No 346
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=92.18 E-value=3.7 Score=32.13 Aligned_cols=71 Identities=11% Similarity=0.049 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHH
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPR-SCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAI 140 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al 140 (229)
..........+|..|+..|++++|+.+|+.+...... ........+...+..| ...+|+.+..+...-+.+
T Consensus 174 ~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~C------a~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 174 NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLEC------AKRLGDVEDYLTTSLELL 245 (247)
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH------HHHhCCHHHHHHHHHHHh
Confidence 4445556678888888888888888888888665432 2222335556666777 778888777777665544
No 347
>KOG1839|consensus
Probab=92.12 E-value=1.6 Score=41.46 Aligned_cols=151 Identities=17% Similarity=0.154 Sum_probs=109.0
Q ss_pred ccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHH
Q psy13014 11 SKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAK 90 (229)
Q Consensus 11 ~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 90 (229)
.+.|+....+..++.++... ++.++|+..-.++..... .......++....+-+++...+..++...|...
T Consensus 967 ~~h~~~~~~~~~La~l~~~~-~d~~~Ai~~~~ka~ii~e--------R~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~ 1037 (1236)
T KOG1839|consen 967 VLHPEVASKYRSLAKLSNRL-GDNQEAIAQQRKACIISE--------RVLGKDSPNTKLAYGNLALYEFAVKNLSGALKS 1037 (1236)
T ss_pred hcchhHHHHHHHHHHHHhhh-cchHHHHHhcccceeeec--------hhccCCCHHHHHHhhHHHHHHHhccCccchhhh
Confidence 35667777788888888888 888888887665542111 011245678888999999999999999999999
Q ss_pred HHHHHHhCCCCCc---hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC-----CC---cHHHHHHHHHHHHh
Q psy13014 91 YNEALRSCPRSCS---VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN-----PS---YLKVYQRRARLYQQ 159 (229)
Q Consensus 91 ~~~al~~~p~~~~---~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~---~~~~~~~la~~~~~ 159 (229)
+.++..+.--... .....+..+++.+ +...++++.|+.+.+.|+..+ |. ....+..++.....
T Consensus 1038 ~~ra~~l~~Ls~ge~hP~~a~~~~nle~l------~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s 1111 (1236)
T KOG1839|consen 1038 LNRALKLKLLSSGEDHPPTALSFINLELL------LLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFES 1111 (1236)
T ss_pred HHHHHHhhccccCCCCCchhhhhhHHHHH------HhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhh
Confidence 9888776311110 1126667888988 889999999999999998864 22 23456677888888
Q ss_pred cccHHHHHHHHHHHHHh
Q psy13014 160 SDKLDEALADYQKILEL 176 (229)
Q Consensus 160 ~~~~~~A~~~~~~al~~ 176 (229)
++++..|+...+....+
T Consensus 1112 ~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1112 MKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hHHHHHHHHHHhhHHHH
Confidence 88888877777666544
No 348
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.10 E-value=2.6 Score=31.77 Aligned_cols=75 Identities=17% Similarity=0.253 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC----cHHHHHHHHHHHH
Q psy13014 83 QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS----YLKVYQRRARLYQ 158 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~ 158 (229)
.-++|...|-++-.. |.-. .+.+.+.+|.. | ...+.++|+..+.+++++.+. +++.+..++.++.
T Consensus 121 ~d~~A~~~fL~~E~~-~~l~---t~elq~aLAty------Y-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~ 189 (203)
T PF11207_consen 121 GDQEALRRFLQLEGT-PELE---TAELQYALATY------Y-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQ 189 (203)
T ss_pred CcHHHHHHHHHHcCC-CCCC---CHHHHHHHHHH------H-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 345566665444332 2111 27777777765 5 467888888888888887533 4778888888888
Q ss_pred hcccHHHHHH
Q psy13014 159 QSDKLDEALA 168 (229)
Q Consensus 159 ~~~~~~~A~~ 168 (229)
..|+++.|--
T Consensus 190 ~~~~~e~AYi 199 (203)
T PF11207_consen 190 KLKNYEQAYI 199 (203)
T ss_pred Hhcchhhhhh
Confidence 8888888753
No 349
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.02 E-value=0.25 Score=23.81 Aligned_cols=24 Identities=13% Similarity=-0.072 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYN 92 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~ 92 (229)
.+...+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999998875
No 350
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.38 E-value=4.2 Score=30.10 Aligned_cols=99 Identities=9% Similarity=0.027 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHH-hcCCCcHH
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAI-TLNPSYLK 148 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~ 148 (229)
+....|.+..+.|+...|+..|..+-...|.. -..+..+...-+.+ +...|.|+.-..-.+..- ..+|-...
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~P-~~~rd~ARlraa~l------LvD~gsy~dV~srvepLa~d~n~mR~s 168 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSIP-QIGRDLARLRAAYL------LVDNGSYDDVSSRVEPLAGDGNPMRHS 168 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCCc-chhhHHHHHHHHHH------HhccccHHHHHHHhhhccCCCChhHHH
Confidence 44444555555555555555555544433321 00111222222333 444455554333332211 11222233
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
+---+|.+-.+.|++.+|.++|.....
T Consensus 169 ArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 169 AREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 344455555666666666666655554
No 351
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.35 E-value=10 Score=33.93 Aligned_cols=142 Identities=11% Similarity=0.002 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
..+++.+|.+++....+++.|..++++++..... ..-..-....-+.++.++.+.+... |....++.++
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~----------~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~ 127 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCER----------HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIE 127 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc----------cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHH
Confidence 4578888999887668999999999988743321 0111223344556688888888887 9999999999
Q ss_pred hCCCCCchhhHHHHHhH-hhhhhhhHHhhccCChHHHHHHHHHHHhcC--CCcHHH----HHHHHHHHHhcccHHHHHHH
Q psy13014 97 SCPRSCSVSRAVFYANR-SAALEKLASYLSLEKPDQSILACSKAITLN--PSYLKV----YQRRARLYQQSDKLDEALAD 169 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~l-g~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~----~~~la~~~~~~~~~~~A~~~ 169 (229)
............++..+ ... ....+++..|++.++...... +.++.+ ....+.++...+..+++++.
T Consensus 128 ~~~~~~~~~w~~~frll~~~l------~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~ 201 (608)
T PF10345_consen 128 DSETYGHSAWYYAFRLLKIQL------ALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLEL 201 (608)
T ss_pred HHhccCchhHHHHHHHHHHHH------HHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHH
Confidence 86653111112222222 222 333479999999999988765 344432 33346777777878888888
Q ss_pred HHHHHH
Q psy13014 170 YQKILE 175 (229)
Q Consensus 170 ~~~al~ 175 (229)
+.++..
T Consensus 202 l~~~~~ 207 (608)
T PF10345_consen 202 LQRAIA 207 (608)
T ss_pred HHHHHH
Confidence 887743
No 352
>KOG0546|consensus
Probab=91.30 E-value=0.15 Score=41.47 Aligned_cols=126 Identities=14% Similarity=0.063 Sum_probs=88.4
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc
Q psy13014 27 LFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFC---SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCS 103 (229)
Q Consensus 27 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 103 (229)
.+.. +++..|...+.+.............+... ............+.+.+-+..+.+..|+..-..++..++..
T Consensus 232 ~~kk-~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~-- 308 (372)
T KOG0546|consen 232 EFKK-QRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSK-- 308 (372)
T ss_pred hhhh-ccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhh--
Confidence 4555 77888887777666544321111111110 01112233455668888889999999998888888877777
Q ss_pred hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHH
Q psy13014 104 VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD 164 (229)
Q Consensus 104 ~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 164 (229)
..+++.++.. +..+.++++|++++..+....|++....-.+..+-....++.
T Consensus 309 ---tka~~Rr~~~------~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~ 360 (372)
T KOG0546|consen 309 ---TKAHYRRGQA------YKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYN 360 (372)
T ss_pred ---CcHHHHHHhH------HHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHH
Confidence 8889999999 999999999999999999999999887666665555554443
No 353
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.66 E-value=14 Score=34.19 Aligned_cols=157 Identities=12% Similarity=-0.033 Sum_probs=108.2
Q ss_pred CchHHHHHHHHHHHHHhhhhhhhhHHHHHHH------HHHHHHHH----------HHHHhhhhh--hhHHHHHHHHHHHH
Q psy13014 14 PSFLYTIYFSCFILFILFSEIRTDCHQFERQ------VFYIQFIF----------HVLFYLFCS--QKLEQTAISLKDEG 75 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~------~~~~~~~~----------~~~~~~~~~--~~~~~~~~~~~~~g 75 (229)
|+-...+..-+..+... |...+|+++.-.+ ...+.... .+..+.+.. ....+++......+
T Consensus 344 ~~~~~lH~~Aa~w~~~~-g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~a 422 (894)
T COG2909 344 ARLKELHRAAAEWFAEH-GLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQA 422 (894)
T ss_pred CchhHHHHHHHHHHHhC-CChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHH
Confidence 44466777777777777 8888777755221 11111110 011111211 12236677788889
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCCc----hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc-----
Q psy13014 76 NALFRLNQWSESLAKYNEALRSCPRSCS----VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY----- 146 (229)
Q Consensus 76 ~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----- 146 (229)
.......++.+|..+..++-..-+.... +..+..-...|.+ ....|+.++|++..+.++..-|.+
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~v------al~~~~~e~a~~lar~al~~L~~~~~~~r 496 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQV------ALNRGDPEEAEDLARLALVQLPEAAYRSR 496 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHH------HHhcCCHHHHHHHHHHHHHhcccccchhh
Confidence 9999999999999999888776443211 1234555566777 888999999999999999987765
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 147 LKVYQRRARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
..++...|.+..-.|++++|..+...+.+..
T Consensus 497 ~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 497 IVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred hhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 3467788999999999999999999998873
No 354
>KOG1914|consensus
Probab=90.58 E-value=2.4 Score=36.78 Aligned_cols=138 Identities=9% Similarity=0.022 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
+..|.+...|+.+-..+-.+ .+++..+.|++.+...|.. +.+|..-... .+..++|+.-...|.+++.
T Consensus 14 e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s-----~r~W~~yi~~------El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 14 EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSS-----PRAWKLYIER------ELASKDFESVEKLFSRCLV 81 (656)
T ss_pred hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCC-----cHHHHHHHHH------HHHhhhHHHHHHHHHHHHH
Confidence 57889999999888777666 9999999999999999999 8888888888 8889999999999999886
Q ss_pred cCCCcHHHHHH-HHHHHHhcccHHHHH----HHHHHHH---HhCCCcHHHHHHhccCch--------HHHhhhhhccccc
Q psy13014 142 LNPSYLKVYQR-RARLYQQSDKLDEAL----ADYQKIL---ELDPNNRDAYVATKVSPD--------LKLKEKNGATKLS 205 (229)
Q Consensus 142 ~~p~~~~~~~~-la~~~~~~~~~~~A~----~~~~~al---~~~p~~~~~~~~l~~~~~--------~~~~~~~~a~~~~ 205 (229)
.--+ .+.|.. +..+-...++...+. +.|+-++ -.++.....|......++ +..++...-.+-|
T Consensus 82 kvLn-lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriY 160 (656)
T KOG1914|consen 82 KVLN-LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIY 160 (656)
T ss_pred HHhh-HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHH
Confidence 5332 333332 344444444433322 2333332 235555556665554432 2333455556667
Q ss_pred ccccccC
Q psy13014 206 PDVFLHP 212 (229)
Q Consensus 206 ~~~~~~p 212 (229)
.+++.-|
T Consensus 161 qral~tP 167 (656)
T KOG1914|consen 161 QRALVTP 167 (656)
T ss_pred HHHhcCc
Confidence 7777666
No 355
>KOG3783|consensus
Probab=90.53 E-value=11 Score=32.80 Aligned_cols=37 Identities=11% Similarity=-0.039 Sum_probs=28.3
Q ss_pred hcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q psy13014 9 ELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVF 46 (229)
Q Consensus 9 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 46 (229)
..+..|+++...+..+..+... |+.+.|...++..+.
T Consensus 259 ~~~~~p~ga~wll~~ar~l~~~-g~~eaa~~~~~~~v~ 295 (546)
T KOG3783|consen 259 YRKRYPKGALWLLMEARILSIK-GNSEAAIDMESLSIP 295 (546)
T ss_pred HHHhCCCCccHHHHHHHHHHHc-ccHHHHHHHHHhccc
Confidence 3456788888888888888888 887777777766554
No 356
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=90.24 E-value=0.68 Score=38.88 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=42.9
Q ss_pred hhccCChHHHHHHHHHHHhcC---------CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 123 YLSLEKPDQSILACSKAITLN---------PSYLKVYQRRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
+.-+|+|..|++.++. ++++ +-+..++|..|-+|..+++|.+|+..|..++.
T Consensus 132 h~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 132 HCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999998864 3333 33466899999999999999999999998873
No 357
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.78 E-value=0.89 Score=25.20 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=18.4
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 151 QRRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 151 ~~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
+.+|.+|..+|+.+.|.+.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567777777777777777777774
No 358
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=89.78 E-value=1.7 Score=36.56 Aligned_cols=130 Identities=18% Similarity=0.175 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHH-------HHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEA-------LRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~a-------l~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
.+..+..++.-.|+|..|++..+.. +...|.. ....++..|.+ |+.+++|..|+..|...+..
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~----~is~~YyvGFa------ylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPAC----HISTYYYVGFA------YLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcch----heehHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 4456667888899999999987543 1111221 26789999999 99999999999999987643
Q ss_pred CCCcHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCC--cHHHHHHhccCchHHHhhhhh-ccccccccc
Q psy13014 143 NPSYLKVYQRRARLYQ-QSDKLDEALADYQKILELDPN--NRDAYVATKVSPDLKLKEKNG-ATKLSPDVF 209 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~-a~~~~~~~~ 209 (229)
-...-..+.....-+- -.+..++....+--++.+.|. +..+...+..-+.+++.++.. .+..|...+
T Consensus 194 i~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF 264 (404)
T PF10255_consen 194 IQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELF 264 (404)
T ss_pred HHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 1111001111111111 124456666666667777775 344444444334344433222 344444444
No 359
>KOG4014|consensus
Probab=89.76 E-value=6.9 Score=29.27 Aligned_cols=142 Identities=12% Similarity=-0.020 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH-----ccCHHHHHHH
Q psy13014 16 FLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFR-----LNQWSESLAK 90 (229)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~A~~~ 90 (229)
.|++-..+|..+--...+++.|...|.+-- ..-..+...+.+|..++. .++...|++.
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nC-----------------den~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~ 95 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNC-----------------DENSYPKSCYKYGMYMLAGKGGDDASLSKAIRP 95 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cccCCcHHHHHhhhhhhcccCCCccCHHHHHHH
Confidence 455666666655554466777777665443 233455566777776654 5678999999
Q ss_pred HHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhcc-----C--ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc---
Q psy13014 91 YNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSL-----E--KPDQSILACSKAITLNPSYLKVYQRRARLYQQS--- 160 (229)
Q Consensus 91 ~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~-----~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--- 160 (229)
|..+...+ . +.+..++|.+ +..- + +.++|.+++.++..++ +..+.+++...+...
T Consensus 96 ~~~aC~~n--~-----~~aC~~~gLl------~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k 160 (248)
T KOG4014|consen 96 MKIACDAN--I-----PQACRYLGLL------HWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEK 160 (248)
T ss_pred HHHHhccC--C-----HHHHhhhhhh------hccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchh
Confidence 99998853 3 7777778877 5432 2 3779999999987764 455555555555433
Q ss_pred ---------------------ccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 161 ---------------------DKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 161 ---------------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
++.++|.+.--+|-+++ ++.+-.++.+++
T Consensus 161 ~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMy 210 (248)
T KOG4014|consen 161 FKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMY 210 (248)
T ss_pred hcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHH
Confidence 56677777777776664 344444555554
No 360
>KOG1463|consensus
Probab=89.69 E-value=9.8 Score=31.25 Aligned_cols=145 Identities=14% Similarity=-0.003 Sum_probs=96.1
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCCchh-hHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHH
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSC-PRSCSVS-RAVFYANRSAALEKLASYLSLEKPDQSILACSKA 139 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~a 139 (229)
...............+|+..++..+|...+..|-... .-++.+- .+.+=..-|.. +....+|.-|-.+|=+|
T Consensus 162 DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIl------ha~ekDykTafSYFyEA 235 (411)
T KOG1463|consen 162 DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGIL------HAAEKDYKTAFSYFYEA 235 (411)
T ss_pred ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccce------eecccccchHHHHHHHH
Confidence 3445556677778888888999999988887775542 2222211 23333334666 77779999999999999
Q ss_pred HhcCC---CcHHH---HHHHHHHHHhcccHHH--HHHHHHHHHHhCCCcHHHHHHhccCch-HHHhhhhhccccccccc-
Q psy13014 140 ITLNP---SYLKV---YQRRARLYQQSDKLDE--ALADYQKILELDPNNRDAYVATKVSPD-LKLKEKNGATKLSPDVF- 209 (229)
Q Consensus 140 l~~~p---~~~~~---~~~la~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~~a~~~~~~~~- 209 (229)
++-.. ++..+ +-.+-.|-..++..++ ++-.-+.+++.+..+.++...++.... +.++++..|+.+|..-+
T Consensus 236 fEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~ 315 (411)
T KOG1463|consen 236 FEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELA 315 (411)
T ss_pred HccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHh
Confidence 87532 22333 3333344444555554 555556677888888888888888764 66788999999998887
Q ss_pred ccC
Q psy13014 210 LHP 212 (229)
Q Consensus 210 ~~p 212 (229)
.||
T Consensus 316 ~D~ 318 (411)
T KOG1463|consen 316 EDP 318 (411)
T ss_pred cCh
Confidence 666
No 361
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.56 E-value=6.9 Score=29.02 Aligned_cols=128 Identities=12% Similarity=0.027 Sum_probs=95.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc----HH
Q psy13014 73 DEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY----LK 148 (229)
Q Consensus 73 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~ 148 (229)
.-+.-+.+.+..++|+..|...-+..-.+.. ..+.+..|.+ ....|+...|+..|+++-.-.|-. ..
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg~g~Yp---vLA~mr~at~------~a~kgdta~AV~aFdeia~dt~~P~~~rd~ 133 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTGYGSYP---VLARMRAATL------LAQKGDTAAAVAAFDEIAADTSIPQIGRDL 133 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCcch---HHHHHHHHHH------HhhcccHHHHHHHHHHHhccCCCcchhhHH
Confidence 3445556789999999999888777654432 5667888999 999999999999999887765432 23
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHH-HHhCCCcHHHHHHhccCchHHHhhhhhcccccccccc
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKI-LELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVFL 210 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 210 (229)
+..+-+.++...|.|++-..-.+-. -.-+|--..+.-.|+... .+.+++.+|.+.|..+.-
T Consensus 134 ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa-~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 134 ARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAA-YKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHH-HhccchHHHHHHHHHHHc
Confidence 4566688899999999987776653 234555566777888776 788899999888876653
No 362
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.53 E-value=1.6 Score=34.96 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=41.7
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKI 173 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 173 (229)
|...|.+.+|++..++++.++|-+...+..+-.++..+|+--.+++.|++.
T Consensus 289 yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 289 YLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 777888888888888888888888888888888888888877777776654
No 363
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=89.41 E-value=1.2 Score=21.92 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=14.4
Q ss_pred ChHHHHHHHHHHHhcCCCcHHHHHHHH
Q psy13014 128 KPDQSILACSKAITLNPSYLKVYQRRA 154 (229)
Q Consensus 128 ~~~~A~~~~~~al~~~p~~~~~~~~la 154 (229)
+.+.|...|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 345555555555555555555555444
No 364
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.24 E-value=1.7 Score=34.74 Aligned_cols=60 Identities=17% Similarity=0.041 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHH
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKA 139 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~a 139 (229)
..+...+..|...|.+.+|+...++++.++|-+ ...+..+-.+ +..+|+--.|+.+|++.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~-----e~~nk~lm~~------la~~gD~is~~khyery 339 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLS-----EQDNKGLMAS------LATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhh-----hHHHHHHHHH------HHHhccchhhhhHHHHH
Confidence 345566778899999999999999999999998 8888888888 88999988888887764
No 365
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.00 E-value=1.5 Score=33.03 Aligned_cols=60 Identities=12% Similarity=0.002 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHH
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSI 133 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~ 133 (229)
+++...+.+|..|. ..+.++|+..+.+++++.+.+ +...++++..|+.+ +.++|+++.|-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~-~~~n~eil~sLas~------~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD-DNFNPEILKSLASI------YQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHH------HHHhcchhhhh
Confidence 56777788886665 889999999999999996543 11238999999999 99999999874
No 366
>KOG0686|consensus
Probab=88.91 E-value=13 Score=31.30 Aligned_cols=115 Identities=15% Similarity=0.053 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC----
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN---- 143 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~---- 143 (229)
-.++..+|.-|...|+.+.|+++|.++-...... ......+.++-.+ -..+|+|..-..+..+|..--
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~--khvInm~ln~i~V------SI~~~nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA--KHVINMCLNLILV------SIYMGNWGHVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch--HHHHHHHHHHHHH------HHhhcchhhhhhHHHHHHhCchhhh
Confidence 4678899999999999999999999954433322 2235667777777 777899888877777776541
Q ss_pred ----CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHH--------hCCCcHHHHHHhccC
Q psy13014 144 ----PSYLKVYQRRARLYQQSDKLDEALADYQKILE--------LDPNNRDAYVATKVS 190 (229)
Q Consensus 144 ----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--------~~p~~~~~~~~l~~~ 190 (229)
.-.+.....-|.+...+++|..|..+|-.+.. +.|.+..++..+..+
T Consensus 222 ~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcAL 280 (466)
T KOG0686|consen 222 NLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCAL 280 (466)
T ss_pred hHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhh
Confidence 11233556667888888899999999876642 246666666655544
No 367
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.55 E-value=18 Score=32.46 Aligned_cols=116 Identities=16% Similarity=0.098 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCc-hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHH
Q psy13014 63 KLEQTAISLKDEGNALF-RLNQWSESLAKYNEALRSCPRSCS-VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAI 140 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al 140 (229)
.....+.+.+.+|.+++ ...+++.|..++++++.+...+.- +....+.+.++.+ +.+.+... |...++++|
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i------~~~~~~~~-a~~~l~~~I 126 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARI------YFKTNPKA-ALKNLDKAI 126 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH------HHhcCHHH-HHHHHHHHH
Confidence 44578889999999998 689999999999999998754322 2245556667778 77777766 999999998
Q ss_pred hcCCC----cHHHHHHHH--HHHHhcccHHHHHHHHHHHHHhC--CCcHHHHH
Q psy13014 141 TLNPS----YLKVYQRRA--RLYQQSDKLDEALADYQKILELD--PNNRDAYV 185 (229)
Q Consensus 141 ~~~p~----~~~~~~~la--~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~ 185 (229)
+.-.+ .....+++- ......+++..|++.++.+.... +.++.+..
T Consensus 127 ~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v 179 (608)
T PF10345_consen 127 EDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV 179 (608)
T ss_pred HHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence 87544 233333332 22323379999999999998876 45665443
No 368
>KOG0890|consensus
Probab=88.47 E-value=12 Score=38.36 Aligned_cols=117 Identities=9% Similarity=0.020 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
.........|...|.+....|+++.|....-+|.+..+ +.++...|.. +...|+...|+..+++.++
T Consensus 1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~-------~~i~~E~AK~------lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL-------PEIVLERAKL------LWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc-------chHHHHHHHH------HHhhccHHHHHHHHHHHHH
Confidence 34567888999999999999999999999999888763 7789999999 9999999999999999996
Q ss_pred cC-CC----------c------HHHHHHHHHHHHhcccH--HHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 142 LN-PS----------Y------LKVYQRRARLYQQSDKL--DEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 142 ~~-p~----------~------~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.+ |+ . ..+.+..+.-....+++ ++-+..|+.+.++.|.....++.+|.-+
T Consensus 1731 ~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1731 KNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred hhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 64 32 1 12344444455555654 3577889999999998888777777433
No 369
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=87.69 E-value=6.9 Score=30.61 Aligned_cols=86 Identities=10% Similarity=0.082 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHhCCCCC-chhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC------cHHHHHHHHH
Q psy13014 83 QWSESLAKYNEALRSCPRSC-SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS------YLKVYQRRAR 155 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~ 155 (229)
.....++.+.+|+....... ......+...+|.- |+..|++++|+..++.+....-. ...++..+..
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~e------y~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~ 226 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEE------YFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLE 226 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 34455667777776654321 22345667778888 99999999999999999655322 2446777889
Q ss_pred HHHhcccHHHHHHHHHHHH
Q psy13014 156 LYQQSDKLDEALADYQKIL 174 (229)
Q Consensus 156 ~~~~~~~~~~A~~~~~~al 174 (229)
|...+|+.+..+...-+.+
T Consensus 227 Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 227 CAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHhCCHHHHHHHHHHHh
Confidence 9999999988877655443
No 370
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.54 E-value=9.4 Score=30.45 Aligned_cols=126 Identities=12% Similarity=0.093 Sum_probs=87.6
Q ss_pred hhHHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHH
Q psy13014 62 QKLEQTAISLKDEGNALFR--LNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKA 139 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~a 139 (229)
...|.+-++|...-.++-. ..++..-...-++.+..++.+ ...|..+-.++.-....+.-..+....++-..+
T Consensus 102 k~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrN-----yH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~ 176 (328)
T COG5536 102 KDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRN-----YHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSL 176 (328)
T ss_pred hcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccc-----cceeeeEeeeeecchhhccchhHHHHHHhHHHH
Confidence 4566666666655555443 366778888889999999988 777777766621111123445566667788888
Q ss_pred HhcCCCcHHHHHHHHH---HHHhccc------HHHHHHHHHHHHHhCCCcHHHHHHhccCch
Q psy13014 140 ITLNPSYLKVYQRRAR---LYQQSDK------LDEALADYQKILELDPNNRDAYVATKVSPD 192 (229)
Q Consensus 140 l~~~p~~~~~~~~la~---~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 192 (229)
|..++.|..+|...-. ..+..|+ +++-+++...++..+|++...|.-+..+..
T Consensus 177 I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~ 238 (328)
T COG5536 177 IETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSS 238 (328)
T ss_pred HhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhc
Confidence 9999999998887732 2233333 677788888899999999999987776653
No 371
>PF12854 PPR_1: PPR repeat
Probab=87.11 E-value=2 Score=22.10 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHH
Q psy13014 146 YLKVYQRRARLYQQSDKLDEALADYQK 172 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (229)
+..+|..+-..+.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 566788888888888898888888764
No 372
>KOG3616|consensus
Probab=86.55 E-value=23 Score=32.53 Aligned_cols=52 Identities=12% Similarity=0.166 Sum_probs=30.2
Q ss_pred HHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy13014 108 VFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKI 173 (229)
Q Consensus 108 ~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 173 (229)
..|-.++.- |...|+|+.|.+.|.++=.. .---..|.+.|++++|...-+++
T Consensus 766 ~yy~~iadh------yan~~dfe~ae~lf~e~~~~--------~dai~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 766 GYYGEIADH------YANKGDFEIAEELFTEADLF--------KDAIDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred ccchHHHHH------hccchhHHHHHHHHHhcchh--------HHHHHHHhccccHHHHHHHHHHh
Confidence 345556666 77777888777777654221 11233455667777666555444
No 373
>KOG3807|consensus
Probab=86.52 E-value=9.5 Score=31.31 Aligned_cols=93 Identities=13% Similarity=0.073 Sum_probs=61.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc----------
Q psy13014 73 DEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL---------- 142 (229)
Q Consensus 73 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~---------- 142 (229)
.+-....+.++..+-+..-..+++++|.. +.++..++.- ..--..+|...++++++.
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eC-----A~AyvLLAEE--------Ea~Ti~~AE~l~k~ALka~e~~yr~sqq 255 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNEC-----ATAYVLLAEE--------EATTIVDAERLFKQALKAGETIYRQSQQ 255 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchh-----hhHHHhhhhh--------hhhhHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44455566777888888888999999988 7777776644 112223333333333321
Q ss_pred -------------CCCcHH--HHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q psy13014 143 -------------NPSYLK--VYQRRARLYQQSDKLDEALADYQKILELDP 178 (229)
Q Consensus 143 -------------~p~~~~--~~~~la~~~~~~~~~~~A~~~~~~al~~~p 178 (229)
...+.. .-.++|+|..++|+..+|++.++...+--|
T Consensus 256 ~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 256 CQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 111222 334689999999999999999998877666
No 374
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=86.52 E-value=1.5 Score=21.53 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=25.5
Q ss_pred ccHHHHHHHHHHHHHhCCCcHHHHHHhccC
Q psy13014 161 DKLDEALADYQKILELDPNNRDAYVATKVS 190 (229)
Q Consensus 161 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 190 (229)
|+.+.|...|++++...|.++..|......
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567899999999999999999998876543
No 375
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=86.11 E-value=9.6 Score=35.90 Aligned_cols=130 Identities=11% Similarity=0.034 Sum_probs=83.0
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHc-------cCHHHHHHHHHHHHHh
Q psy13014 25 FILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRL-------NQWSESLAKYNEALRS 97 (229)
Q Consensus 25 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------~~~~~A~~~~~~al~~ 97 (229)
.++... ..|+.|...|.+.....+ ...+--++.+..|.+...+ ..+.+|+..|++.-.
T Consensus 483 ~~~~~~-~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 547 (932)
T PRK13184 483 DAFLAE-KLYDQALIFYRRIRESFP-------------GRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG- 547 (932)
T ss_pred HHHHhh-HHHHHHHHHHHHHhhcCC-------------CcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-
Confidence 445555 677778777766653222 2234445667777766543 246777777766543
Q ss_pred CCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHH-------HHHHHHhcccHHHHHHHH
Q psy13014 98 CPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQR-------RARLYQQSDKLDEALADY 170 (229)
Q Consensus 98 ~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~~~~~~A~~~~ 170 (229)
.|.- +-=|...|.+ |..+|+|++-++++.-|++..|+++..-.. +-.+... .-..|....
T Consensus 548 ~~~~-----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 614 (932)
T PRK13184 548 GVGA-----PLEYLGKALV------YQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRREALVFM 614 (932)
T ss_pred CCCC-----chHHHhHHHH------HHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 3443 6668888889 999999999999999999999998764333 2222222 223455555
Q ss_pred HHHHHhCCCcHH
Q psy13014 171 QKILELDPNNRD 182 (229)
Q Consensus 171 ~~al~~~p~~~~ 182 (229)
--++..-|....
T Consensus 615 ~~~~~~~~~~~~ 626 (932)
T PRK13184 615 LLALWIAPEKIS 626 (932)
T ss_pred HHHHHhCccccc
Confidence 556666676543
No 376
>KOG3616|consensus
Probab=85.84 E-value=24 Score=32.34 Aligned_cols=149 Identities=11% Similarity=0.114 Sum_probs=81.6
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH---hh------hhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy13014 24 CFILFILFSEIRTDCHQFERQVFYIQFIFHVLF---YL------FCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEA 94 (229)
Q Consensus 24 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 94 (229)
|.-+... |+++.|+..|-.+-..+..+...++ |. ...+........+-.++.-|...|+|+.|.+.|.++
T Consensus 713 g~hl~~~-~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 713 GDHLEQI-GQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred hHHHHHH-HhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 3444445 7888888777554444433333332 11 111111122233445666666777777777666443
Q ss_pred ------HHhCCCCCc--------------hhhHHHHHhHhhhhhhhHH-------hhccCChHHHHHHHHHHH------h
Q psy13014 95 ------LRSCPRSCS--------------VSRAVFYANRSAALEKLAS-------YLSLEKPDQSILACSKAI------T 141 (229)
Q Consensus 95 ------l~~~p~~~~--------------~~~~~~~~~lg~~~~~~~~-------~~~~~~~~~A~~~~~~al------~ 141 (229)
+.+...... +....+|...+.-+.+.|. |...|.+++||+.|++.- .
T Consensus 792 ~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmir 871 (1636)
T KOG3616|consen 792 DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIR 871 (1636)
T ss_pred chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHH
Confidence 332222111 1123334444444555553 566788899999887642 1
Q ss_pred ----cCCCc-HHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy13014 142 ----LNPSY-LKVYQRRARLYQQSDKLDEALADYQKI 173 (229)
Q Consensus 142 ----~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~a 173 (229)
..|++ ..++..+|.-+...|+...|...|-++
T Consensus 872 lv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 872 LVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 12333 456778888888888888888877665
No 377
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=84.96 E-value=9.9 Score=27.02 Aligned_cols=53 Identities=17% Similarity=0.041 Sum_probs=38.7
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHH
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDE 165 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 165 (229)
.+.....+.. .+..|++.-|.+..+.++..+|++..+...++.++..+|.-.+
T Consensus 70 ~d~vl~~A~~------~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 70 ADKVLERAQA------ALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHH------HHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 4445555566 7888999999999999999999999888888888888776443
No 378
>KOG0890|consensus
Probab=84.67 E-value=12 Score=38.32 Aligned_cols=22 Identities=9% Similarity=-0.094 Sum_probs=15.3
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHH
Q psy13014 22 FSCFILFILFSEIRTDCHQFERQ 44 (229)
Q Consensus 22 ~~~~~~~~~~~~~~~a~~~~~~~ 44 (229)
.++.+-+.. +.+..|..++++.
T Consensus 1388 tLa~aSfrc-~~y~RalmylEs~ 1409 (2382)
T KOG0890|consen 1388 TLARASFRC-KAYARALMYLESH 1409 (2382)
T ss_pred HHHHHHHhh-HHHHHHHHHHHHh
Confidence 345556666 7888888888773
No 379
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=84.40 E-value=7.8 Score=24.23 Aligned_cols=31 Identities=10% Similarity=0.099 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
.+..+...|..+-+.|++.+|+.+|++++..
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3445556666677777777777777666543
No 380
>KOG2422|consensus
Probab=83.75 E-value=18 Score=31.90 Aligned_cols=117 Identities=12% Similarity=0.027 Sum_probs=80.8
Q ss_pred HccCHHHHHHHHHHHHHhCCCCC-------chhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc----------
Q psy13014 80 RLNQWSESLAKYNEALRSCPRSC-------SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL---------- 142 (229)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~p~~~-------~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~---------- 142 (229)
....|++|...|.-++...+.+. .....+....++.+ +..+|+.+-|.....++|-.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~------~r~qgD~e~aadLieR~Ly~~d~a~hp~F~ 323 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADI------FRFQGDREMAADLIERGLYVFDRALHPNFI 323 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHH------HHHhcchhhHHHHHHHHHHHHHHHhccccc
Confidence 35668899999988877644331 12247788899999 88899988777666666521
Q ss_pred -----------CCCcH---HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-cHHHHHHhccCchHHHhhhhhcc
Q psy13014 143 -----------NPSYL---KVYQRRARLYQQSDKLDEALADYQKILELDPN-NRDAYVATKVSPDLKLKEKNGAT 202 (229)
Q Consensus 143 -----------~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~ 202 (229)
.|.|- .+++..-..+...|-+.-|.++++-.++++|. ||-+...+-.++..+.+++.-.+
T Consensus 324 ~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI 398 (665)
T KOG2422|consen 324 PFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWII 398 (665)
T ss_pred cccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHH
Confidence 12222 23445556667789999999999999999998 88776666666655555544433
No 381
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=83.71 E-value=8.7 Score=28.66 Aligned_cols=51 Identities=22% Similarity=0.159 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCc
Q psy13014 129 PDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180 (229)
Q Consensus 129 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 180 (229)
.+..++..++.++..| ++..+.+++.++...|+.++|.....++..+.|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 4455677778888888 68889999999999999999999999999999943
No 382
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=83.28 E-value=4.3 Score=28.82 Aligned_cols=51 Identities=16% Similarity=0.035 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhh
Q psy13014 146 YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKE 197 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 197 (229)
........+......|++..|.+....++..+|++..+....+.++ +.++.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al-~~lg~ 119 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADAL-EQLGY 119 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH-HHHHH
Confidence 3456677888889999999999999999999999999999999888 55554
No 383
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.11 E-value=2.4 Score=23.46 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=23.4
Q ss_pred HhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 111 ANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 111 ~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
+.+|.+ |..+|+.+.|...+++++..
T Consensus 3 LdLA~a------yie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARA------YIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHH------HHHcCChHHHHHHHHHHHHc
Confidence 568888 99999999999999999964
No 384
>KOG2581|consensus
Probab=83.07 E-value=27 Score=29.50 Aligned_cols=73 Identities=7% Similarity=-0.056 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
.+.....+=..|...+.|++|.....++.--...+ ....+...+.+|.+ ..-+.+|..|.+++-.|+...|.+
T Consensus 208 qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~s-nne~ARY~yY~GrI------kaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 208 QAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAAS-NNEWARYLYYLGRI------KAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccc-cHHHHHHHHHHhhH------HHhhcchhHHHHHHHHHHHhCcch
Confidence 33444455556666666777666655543211111 11235566667777 777777777777777777766654
No 385
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=82.80 E-value=23 Score=31.41 Aligned_cols=87 Identities=9% Similarity=0.083 Sum_probs=62.2
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy13014 78 LFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLY 157 (229)
Q Consensus 78 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 157 (229)
+.+.+..+.+....+.-+.-.... +...+..+.. +-..++.++|-++|++.+..+|+ ..++..|.-+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 84 (578)
T PRK15490 18 LKQEKKLAQAVALIDSELPTEALT-----SLAMLKKAEF------LHDVNETERAYALYETLIAQNND--EARYEYARRL 84 (578)
T ss_pred HHHHhhHHHHHHHHHHhCCccchh-----HHHHHHHhhh------hhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHH
Confidence 344555666666665555444433 5556666777 77888899999999999998887 6677888888
Q ss_pred HhcccHHHHHHHHHHHHHhCCCc
Q psy13014 158 QQSDKLDEALADYQKILELDPNN 180 (229)
Q Consensus 158 ~~~~~~~~A~~~~~~al~~~p~~ 180 (229)
.+.|-...|...++ ++.|.-
T Consensus 85 ~~~~~~~~~~~~~~---~~~~~~ 104 (578)
T PRK15490 85 YNTGLAKDAQLILK---KVSNGV 104 (578)
T ss_pred HhhhhhhHHHHHHH---HhCccH
Confidence 88888888887776 455543
No 386
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.77 E-value=5.7 Score=30.58 Aligned_cols=60 Identities=15% Similarity=0.118 Sum_probs=55.4
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 182 (229)
+.+.++..+|+.....-++-+|.+...-..+=..+.-.|++++|...++-+-+++|++..
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 667889999999999999999999998888889999999999999999999999998764
No 387
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=82.39 E-value=17 Score=28.27 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHh-----cCCCcHH---HHHHHHHHH-HhcccHHHHHHHHHHHHH
Q psy13014 130 DQSILACSKAIT-----LNPSYLK---VYQRRARLY-QQSDKLDEALADYQKILE 175 (229)
Q Consensus 130 ~~A~~~~~~al~-----~~p~~~~---~~~~la~~~-~~~~~~~~A~~~~~~al~ 175 (229)
++|...|++|+. +.|.+|. ...+.+..+ .-+|+.++|+...++++.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 567777777765 4566654 344555555 458899998888888764
No 388
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=82.33 E-value=23 Score=28.03 Aligned_cols=80 Identities=10% Similarity=0.057 Sum_probs=48.9
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH----------------HHhCCCCCchhhHHHHHhHhhh
Q psy13014 53 HVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEA----------------LRSCPRSCSVSRAVFYANRSAA 116 (229)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a----------------l~~~p~~~~~~~~~~~~~lg~~ 116 (229)
..+.|-........++..+..+|..+++.+++.+|..+|-.. ....|.. .+.+..+|..
T Consensus 75 ~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e-----~dlfi~RaVL 149 (260)
T PF04190_consen 75 AAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSE-----ADLFIARAVL 149 (260)
T ss_dssp HHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS-------HHHHHHHHHH
T ss_pred HHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcc-----hhHHHHHHHH
Confidence 334344222334478899999999999999999999887221 1112333 5666666655
Q ss_pred hhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 117 LEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 117 ~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
.|..+++...|...++.-++.
T Consensus 150 -----~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 -----QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -----HHHHTTBHHHHHHHHHHHHHH
T ss_pred -----HHHHhcCHHHHHHHHHHHHHH
Confidence 267789988888766655544
No 389
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=81.65 E-value=11 Score=26.09 Aligned_cols=70 Identities=17% Similarity=0.096 Sum_probs=51.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc------h----hhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHH-
Q psy13014 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCS------V----SRAVFYANRSAALEKLASYLSLEKPDQSILACSKA- 139 (229)
Q Consensus 71 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~----~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~a- 139 (229)
+..+|...++.+++-.++-+|++|+.+..+-.. . .......|+|.. +...|+.+-.+++++-|
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~F------WR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADF------WRSQGDSDYELKYLQLAS 77 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHH------HHHcCChHHHHHHHHHHH
Confidence 456888999999999999999999887433210 1 124457788889 99999999998888654
Q ss_pred ---HhcCCCc
Q psy13014 140 ---ITLNPSY 146 (229)
Q Consensus 140 ---l~~~p~~ 146 (229)
+.+-|..
T Consensus 78 E~VltLiPQC 87 (140)
T PF10952_consen 78 EKVLTLIPQC 87 (140)
T ss_pred HHHHHhccCC
Confidence 4445543
No 390
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=81.46 E-value=6.1 Score=23.98 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
+..+...|..+-+.|++++|+.+|.+++..
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 334556677777788888888888777664
No 391
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=81.42 E-value=13 Score=31.89 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=21.0
Q ss_pred cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy13014 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKI 173 (229)
Q Consensus 126 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 173 (229)
+|+.+.|.+..++ .+++..|..+|......|+++-|.++|+++
T Consensus 331 lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 331 LGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp CT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 4555555443322 224445555555555555555555555443
No 392
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=81.38 E-value=34 Score=29.44 Aligned_cols=45 Identities=11% Similarity=-0.001 Sum_probs=26.0
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHH
Q psy13014 79 FRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKA 139 (229)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~a 139 (229)
.+.|+.+.|.+... ..++ +..|..+|.. .+..|+++-|..+|.++
T Consensus 329 l~lg~L~~A~~~a~-----~~~~-----~~~W~~Lg~~------AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 329 LQLGNLDIALEIAK-----ELDD-----PEKWKQLGDE------ALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHCT-HHHHHHHCC-----CCST-----HHHHHHHHHH------HHHTTBHHHHHHHHHHC
T ss_pred HhcCCHHHHHHHHH-----hcCc-----HHHHHHHHHH------HHHcCCHHHHHHHHHhh
Confidence 45566666555431 1123 5667777777 77777777777666654
No 393
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=80.48 E-value=12 Score=23.47 Aligned_cols=10 Identities=10% Similarity=0.069 Sum_probs=4.5
Q ss_pred HHhcCCCcHH
Q psy13014 139 AITLNPSYLK 148 (229)
Q Consensus 139 al~~~p~~~~ 148 (229)
++...|+++.
T Consensus 39 ~~~~~pD~~~ 48 (75)
T cd02682 39 IVKNYPDSPT 48 (75)
T ss_pred HHHhCCChHH
Confidence 3334455544
No 394
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=79.78 E-value=17 Score=25.73 Aligned_cols=55 Identities=15% Similarity=0.012 Sum_probs=38.2
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
....|.-++=-+.+....+.+..++..+..+|.+|.++|+..+|-+.+.+|-+..
T Consensus 96 lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 96 LVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 4456666666666666666666789999999999999999999999999887654
No 395
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=79.24 E-value=23 Score=30.52 Aligned_cols=139 Identities=8% Similarity=-0.001 Sum_probs=92.2
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
+..|.+...|+.+-..+-.++.+++-.+.|++...-.|-. +.+|...-.- -...+++......|.+++.
T Consensus 36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~-----~~aw~ly~s~------ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIM-----EHAWRLYMSG------ELARKDFRSVESLFGRCLK 104 (660)
T ss_pred hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccc-----cHHHHHHhcc------hhhhhhHHHHHHHHHHHHh
Confidence 5889999999999999999999999999999999988876 5555544333 3456788888888888876
Q ss_pred cCCCcHHHHHHHHHHHHhcc---------cHHHHHHHHHHHHHhCCCcHHHHHHhccCch--------HHHhhhhhcccc
Q psy13014 142 LNPSYLKVYQRRARLYQQSD---------KLDEALADYQKILELDPNNRDAYVATKVSPD--------LKLKEKNGATKL 204 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~---------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--------~~~~~~~~a~~~ 204 (229)
..-+ .+.|...-..-.+.+ ..-+|.+..-.+.-.+|.....|...+..+. +..++.+.-.+-
T Consensus 105 k~l~-ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 105 KSLN-LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred hhcc-HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 5432 444433222211111 1334544444455567888888887776653 333445555666
Q ss_pred cccccccC
Q psy13014 205 SPDVFLHP 212 (229)
Q Consensus 205 ~~~~~~~p 212 (229)
|.+++--|
T Consensus 184 Y~ral~tP 191 (660)
T COG5107 184 YMRALQTP 191 (660)
T ss_pred HHHHHcCc
Confidence 66666555
No 396
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=78.49 E-value=7.7 Score=24.31 Aligned_cols=31 Identities=19% Similarity=0.189 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
.+..+...|..+-+.|+|++|+.+|..++..
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445666777778888888888888888764
No 397
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.41 E-value=26 Score=27.14 Aligned_cols=62 Identities=13% Similarity=0.042 Sum_probs=48.4
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 75 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
...+.+.++..+|+...+.-++-.|.+ ......+=.. +.-.|+|++|..-++-+-++.|+..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtd-----a~~RhflfqL------lcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTD-----AGGRHFLFQL------LCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCcc-----ccchhHHHHH------HhhcchHHHHHHHHHHHhhcCcccc
Confidence 345667788889999998888888887 6555555566 6678999999988888888888764
No 398
>KOG1464|consensus
Probab=78.17 E-value=34 Score=27.46 Aligned_cols=166 Identities=13% Similarity=0.144 Sum_probs=100.3
Q ss_pred cchhhcccCCchHHH----HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH----------HHHHhhhhhh--------
Q psy13014 5 PYQQELSKNPSFLYT----IYFSCFILFILFSEIRTDCHQFERQVFYIQFIF----------HVLFYLFCSQ-------- 62 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~~~~~-------- 62 (229)
.|++.+++.|+...+ +-.+-.+.+.+ +++++-...|...+..+.... .++.+...+.
T Consensus 49 sF~kVlelEgEKgeWGFKALKQmiKI~f~l-~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~F 127 (440)
T KOG1464|consen 49 SFQKVLELEGEKGEWGFKALKQMIKINFRL-GNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEF 127 (440)
T ss_pred HHHHHHhcccccchhHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 478888888877654 33345577788 899988888876665443221 1222221111
Q ss_pred --------hHHHHHHHH----HHHHHHHHHccCHHHHHHHHHHHHHhCCCC-Cc------hhhHHHHHhHhhhhhhhHHh
Q psy13014 63 --------KLEQTAISL----KDEGNALFRLNQWSESLAKYNEALRSCPRS-CS------VSRAVFYANRSAALEKLASY 123 (229)
Q Consensus 63 --------~~~~~~~~~----~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~------~~~~~~~~~lg~~~~~~~~~ 123 (229)
.+..+-..| ..+|..++..++|.+-...+.+.-...... .. .-...+|..--.. |
T Consensus 128 YeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm------Y 201 (440)
T KOG1464|consen 128 YETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM------Y 201 (440)
T ss_pred HHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh------h
Confidence 011112222 368888888888888777766654432211 11 1123445544556 7
Q ss_pred hccCChHHHHHHHHHHHhcCCC--cHHHHHH----HHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 124 LSLEKPDQSILACSKAITLNPS--YLKVYQR----RARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 124 ~~~~~~~~A~~~~~~al~~~p~--~~~~~~~----la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
..+.+..+-...|++++.+... ++...-- =|..+..-|++++|-..|-.|++-.
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 7788888888889999887643 2222211 2566778899999999998888653
No 399
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=77.35 E-value=12 Score=30.66 Aligned_cols=95 Identities=21% Similarity=0.305 Sum_probs=68.0
Q ss_pred cCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHh
Q psy13014 82 NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN--PSYLKVYQRRARLYQQ 159 (229)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~ 159 (229)
-+|..-...|+-...+.|+ +.+-.|++.+ .-...-.+.++...+.+.... ....-.+--.|..+.+
T Consensus 310 tDW~~I~aLYdaL~~~apS------PvV~LNRAVA------la~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~r 377 (415)
T COG4941 310 TDWPAIDALYDALEQAAPS------PVVTLNRAVA------LAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLAR 377 (415)
T ss_pred CChHHHHHHHHHHHHhCCC------CeEeehHHHH------HHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHH
Confidence 4566666667777777675 6667777777 656566677777776555431 2223456667999999
Q ss_pred cccHHHHHHHHHHHHHhCCCcHHHHHHhc
Q psy13014 160 SDKLDEALADYQKILELDPNNRDAYVATK 188 (229)
Q Consensus 160 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 188 (229)
+|+.++|...|++++.+.++..+..+...
T Consensus 378 Lgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 378 LGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred hCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 99999999999999999998877665443
No 400
>PF13041 PPR_2: PPR repeat family
Probab=76.74 E-value=11 Score=20.99 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=19.6
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
...|..+-.. +.+.|++++|.+.|++..+..
T Consensus 3 ~~~yn~li~~------~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 3 VVTYNTLISG------YCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred hHHHHHHHHH------HHHCcCHHHHHHHHHHHHHcC
Confidence 3445555556 667777777777777766543
No 401
>KOG0985|consensus
Probab=76.74 E-value=74 Score=30.65 Aligned_cols=151 Identities=11% Similarity=0.031 Sum_probs=88.0
Q ss_pred hhhhhhHHHHHHHHHHH---HHHHHHHHhhh---hhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchh
Q psy13014 32 SEIRTDCHQFERQVFYI---QFIFHVLFYLF---CSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVS 105 (229)
Q Consensus 32 ~~~~~a~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 105 (229)
+-+++|...|++.-... +....-+..++ .....-+.+..|..+|.+..+.+...+|++.|-++ ++
T Consensus 1062 ~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika-----dD---- 1132 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DD---- 1132 (1666)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CC----
Confidence 55677777776654322 22222222221 11233466789999999999999999999999554 22
Q ss_pred hHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc----------------------------CCCcHHHHHHHHHHH
Q psy13014 106 RAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL----------------------------NPSYLKVYQRRARLY 157 (229)
Q Consensus 106 ~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~----------------------------~p~~~~~~~~la~~~ 157 (229)
+..|...-.+ ..+.|.|++-+.++.-|.+. .|+.+. .-..|.-.
T Consensus 1133 -ps~y~eVi~~------a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~-i~~vGdrc 1204 (1666)
T KOG0985|consen 1133 -PSNYLEVIDV------ASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVAN-IQQVGDRC 1204 (1666)
T ss_pred -cHHHHHHHHH------HHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchh-HHHHhHHH
Confidence 4556666666 55667777666666555432 122221 23345555
Q ss_pred HhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcccccccc
Q psy13014 158 QQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDV 208 (229)
Q Consensus 158 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 208 (229)
+..|.|+.|.-.|.. ..-+..++..+ -.++++..|+..-+++
T Consensus 1205 f~~~~y~aAkl~y~~--------vSN~a~La~TL-V~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1205 FEEKMYEAAKLLYSN--------VSNFAKLASTL-VYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhhhhhHHHHHHHHH--------hhhHHHHHHHH-HHHHHHHHHHHHhhhc
Confidence 666677766666532 33444555444 6677777776655544
No 402
>KOG2041|consensus
Probab=76.60 E-value=40 Score=30.78 Aligned_cols=72 Identities=6% Similarity=-0.109 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH------HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy13014 19 TIYFSCFILFILFSEIRTDCHQFERQVFYIQ------FIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKY 91 (229)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 91 (229)
++...|..+..+ -.|.+|..+|...-.... .....-.........|++...+-.+|..+...|.-++|++.|
T Consensus 798 A~r~ig~~fa~~-~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 798 AFRNIGETFAEM-MEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 445555556666 666666666643221111 111111111222344555555555666666666666666655
No 403
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=75.95 E-value=9.3 Score=23.98 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
.+...|..+-+.|+|++|+.+|.+++..
T Consensus 8 ~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 8 EVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555666666666666666666553
No 404
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=75.69 E-value=6.2 Score=18.98 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHH
Q psy13014 150 YQRRARLYQQSDKLDEALADYQKIL 174 (229)
Q Consensus 150 ~~~la~~~~~~~~~~~A~~~~~~al 174 (229)
|..+-.++.+.|++++|.+.|++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3344455555566666666555543
No 405
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=75.56 E-value=8.9 Score=23.24 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=10.8
Q ss_pred HHHHHHhcccHHHHHHHHHHHH
Q psy13014 153 RARLYQQSDKLDEALADYQKIL 174 (229)
Q Consensus 153 la~~~~~~~~~~~A~~~~~~al 174 (229)
.|.-.-..|++++|+.+|.+++
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444555555555555444
No 406
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.15 E-value=13 Score=27.66 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 84 WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
.+..++..++.++..|+ +..+.+++.+ +...|+.++|.....++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P~------~~~~~~~a~~------l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD------PNVYQRYALA------LALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCCC------HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCCc
Confidence 44555566777777786 8899999999 99999999999999999999993
No 407
>PF13041 PPR_2: PPR repeat family
Probab=74.50 E-value=11 Score=20.89 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 146 YLKVYQRRARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
+..+|..+-..+.+.|++++|.+.|++..+..
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 45678888899999999999999999988664
No 408
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=74.10 E-value=9.6 Score=26.29 Aligned_cols=32 Identities=22% Similarity=0.516 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRS 101 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 101 (229)
.-..+|+.+...|++++|..+|-+|+...|..
T Consensus 65 ~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 65 QQVQLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 34578999999999999999999999999985
No 409
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=73.35 E-value=44 Score=26.43 Aligned_cols=26 Identities=12% Similarity=-0.013 Sum_probs=16.2
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHH
Q psy13014 145 SYLKVYQRRARLYQQSDKLDEALADY 170 (229)
Q Consensus 145 ~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (229)
.++..+..+|..+.+-|++.+|..+|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 35667777777777777777666655
No 410
>KOG2758|consensus
Probab=72.77 E-value=52 Score=27.05 Aligned_cols=155 Identities=10% Similarity=-0.014 Sum_probs=85.1
Q ss_pred cccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHH
Q psy13014 10 LSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLA 89 (229)
Q Consensus 10 l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 89 (229)
-...|+...++|..+...+.. |+|..|..++--+..... ..+++...+++..--.-.-+.+|+-|.+
T Consensus 122 ynf~~e~i~~lykyakfqyeC-GNY~gAs~yLY~~r~l~~------------~~d~n~lsalwGKlASEIL~qnWd~A~e 188 (432)
T KOG2758|consen 122 YNFTPERIETLYKYAKFQYEC-GNYSGASDYLYFYRALVS------------DPDRNYLSALWGKLASEILTQNWDGALE 188 (432)
T ss_pred cCCCHHHHHHHHHHHHHHHhc-cCcccHHHHHHHHHHhcC------------CcchhhHHHHHHHHHHHHHHhhHHHHHH
Confidence 346788899999999999999 999998887644432211 2333334444433333344455555555
Q ss_pred HHHHHHHhC---CCCC--------------------------c-----------------hhhHHHHHhHhhhhhhhHHh
Q psy13014 90 KYNEALRSC---PRSC--------------------------S-----------------VSRAVFYANRSAALEKLASY 123 (229)
Q Consensus 90 ~~~~al~~~---p~~~--------------------------~-----------------~~~~~~~~~lg~~~~~~~~~ 123 (229)
-+.+.-+.- +-.. + ..-+.+...++.+ .
T Consensus 189 dL~rLre~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLatA------v 262 (432)
T KOG2758|consen 189 DLTRLREYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLATA------V 262 (432)
T ss_pred HHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHHHH------h
Confidence 554443321 1110 0 0113444444444 3
Q ss_pred hcc-CChHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHH
Q psy13014 124 LSL-EKPDQSILACSKAITLNPSY-LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183 (229)
Q Consensus 124 ~~~-~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 183 (229)
... .....+++.+-++|+...-. -+.....-.|++-.=+++.|...++++-+.=-+|...
T Consensus 263 vtnk~~rr~~lkdlvkVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeVl~nDfFL 324 (432)
T KOG2758|consen 263 VTNKRRRRNRLKDLVKVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLRECEEVLVNDFFL 324 (432)
T ss_pred hcchHhhHHHHHHHHHHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHHHHHHhcchhH
Confidence 333 55666777777777654221 1123334455566667888887777776655554443
No 411
>KOG0276|consensus
Probab=71.33 E-value=30 Score=30.91 Aligned_cols=34 Identities=9% Similarity=0.089 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
..+...-|..+|.+..+.+++..|.+++.++-..
T Consensus 662 e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 662 EANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 4456678999999999999999999999988654
No 412
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=71.25 E-value=12 Score=23.44 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=10.9
Q ss_pred HHHHHhcccHHHHHHHHHHHHH
Q psy13014 154 ARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 154 a~~~~~~~~~~~A~~~~~~al~ 175 (229)
|.-.-..|+|++|+.+|..+++
T Consensus 13 Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 13 AVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3334445555555555555543
No 413
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=71.23 E-value=7.1 Score=24.38 Aligned_cols=14 Identities=14% Similarity=0.226 Sum_probs=7.1
Q ss_pred ccHHHHHHHHHHHH
Q psy13014 161 DKLDEALADYQKIL 174 (229)
Q Consensus 161 ~~~~~A~~~~~~al 174 (229)
|+|++|..+|..++
T Consensus 20 ~~y~eA~~~Y~~~i 33 (75)
T cd02677 20 GDYEAAFEFYRAGV 33 (75)
T ss_pred hhHHHHHHHHHHHH
Confidence 55555555554444
No 414
>KOG3783|consensus
Probab=71.21 E-value=48 Score=29.05 Aligned_cols=87 Identities=7% Similarity=-0.071 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
..|..+.-....+..+...|+.+.|+..++..+. + .........++.+|.+ +.-+.+|.+|..++......
T Consensus 262 ~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~-~~kQ~~~l~~fE~aw~------~v~~~~~~~aad~~~~L~de 332 (546)
T KOG3783|consen 262 RYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--I-RMKQVKSLMVFERAWL------SVGQHQYSRAADSFDLLRDE 332 (546)
T ss_pred hCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--H-HHHHHHHHHHHHHHHH------HHHHHHHHHHhhHHHHHHhh
Confidence 4456666666777777777778888888887777 2 2223346677888888 88888999999999887776
Q ss_pred CCCcHHHHHHH-HHHHH
Q psy13014 143 NPSYLKVYQRR-ARLYQ 158 (229)
Q Consensus 143 ~p~~~~~~~~l-a~~~~ 158 (229)
..-+.-.|..+ |.|+.
T Consensus 333 sdWS~a~Y~Yfa~cc~l 349 (546)
T KOG3783|consen 333 SDWSHAFYTYFAGCCLL 349 (546)
T ss_pred hhhhHHHHHHHHHHHHh
Confidence 54333333333 45554
No 415
>KOG4014|consensus
Probab=70.95 E-value=34 Score=25.74 Aligned_cols=109 Identities=9% Similarity=-0.011 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhh-----ccCChHHHHHHHHHHH
Q psy13014 67 TAISLKDEGNALFR-LNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL-----SLEKPDQSILACSKAI 140 (229)
Q Consensus 67 ~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~-----~~~~~~~A~~~~~~al 140 (229)
.|.....+|..+.. +.+|++|...|..-..-+.- +...+.+|.. ++ ..++...|++.+..+.
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~y------~kSCyKyG~y------~~~GKgG~~~~l~~a~r~~~~aC 100 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENSY------PKSCYKYGMY------MLAGKGGDDASLSKAIRPMKIAC 100 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC------cHHHHHhhhh------hhcccCCCccCHHHHHHHHHHHh
Confidence 44555566655532 45566666666554443321 4445555544 32 2356899999999887
Q ss_pred hcCCCcHHHHHHHHHHHHhc-----c--cHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 141 TLNPSYLKVYQRRARLYQQS-----D--KLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 141 ~~~p~~~~~~~~la~~~~~~-----~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
. -+.+.+..++|.++..- + +..+|..+++++-.++- ..+-+.|..++
T Consensus 101 ~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~--~~aCf~LS~m~ 154 (248)
T KOG4014|consen 101 D--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLED--GEACFLLSTMY 154 (248)
T ss_pred c--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCC--chHHHHHHHHH
Confidence 7 56678888888887643 2 37789999998876653 34444444443
No 416
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=70.92 E-value=13 Score=19.15 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=9.4
Q ss_pred cHHHHHHHHHHHHHh
Q psy13014 162 KLDEALADYQKILEL 176 (229)
Q Consensus 162 ~~~~A~~~~~~al~~ 176 (229)
++++|+.+|+++.+.
T Consensus 23 d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 23 DYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHc
Confidence 466677777666543
No 417
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=70.40 E-value=7.6 Score=30.07 Aligned_cols=97 Identities=21% Similarity=0.222 Sum_probs=56.4
Q ss_pred HHHccCHHHHHHHHHHHHHhC---CCCCchh----hHHHHHhHhhhhhhhHHhhccCCh-HHH-HHHHHHHHhc-C-CCc
Q psy13014 78 LFRLNQWSESLAKYNEALRSC---PRSCSVS----RAVFYANRSAALEKLASYLSLEKP-DQS-ILACSKAITL-N-PSY 146 (229)
Q Consensus 78 ~~~~~~~~~A~~~~~~al~~~---p~~~~~~----~~~~~~~lg~~~~~~~~~~~~~~~-~~A-~~~~~~al~~-~-p~~ 146 (229)
.+..|+|+.|++....+|+.+ |+..... .++-...-+.. ....|.. +.. ...+..+..- + |+.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~------~~~ag~~~e~~~~~~~~~l~~~~dmpd~ 166 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALK------AASAGESVEPYFLRVFLDLTTEWDMPDE 166 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHH------HHHcCCCCChHHHHHHHHHHhcCCCChH
Confidence 356899999999999999985 4332211 12222222333 3344442 222 2222322221 1 333
Q ss_pred H--HHHHHHHHHH---------HhcccHHHHHHHHHHHHHhCCCc
Q psy13014 147 L--KVYQRRARLY---------QQSDKLDEALADYQKILELDPNN 180 (229)
Q Consensus 147 ~--~~~~~la~~~---------~~~~~~~~A~~~~~~al~~~p~~ 180 (229)
+ +.+-..|..+ ...++...|+.++++|++++|..
T Consensus 167 vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 167 VRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 3 3455567777 35678899999999999999874
No 418
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=70.21 E-value=65 Score=27.09 Aligned_cols=72 Identities=15% Similarity=0.109 Sum_probs=44.7
Q ss_pred CCchHH--HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHH
Q psy13014 13 NPSFLY--TIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAK 90 (229)
Q Consensus 13 ~p~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 90 (229)
||.... -....+..++.. +++..|...+......++ ....-........|..+...-++.+|.+.
T Consensus 125 ~p~~~~~~~~~~~a~~l~n~-~~y~aA~~~l~~l~~rl~------------~~~~~~~~~~l~~~y~~WD~fd~~~A~~~ 191 (379)
T PF09670_consen 125 NPYEVFGDREWRRAKELFNR-YDYGAAARILEELLRRLP------------GREEYQRYKDLCEGYDAWDRFDHKEALEY 191 (379)
T ss_pred CHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCC------------chhhHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 454443 234455667777 889999988877663211 00111223344456666788999999999
Q ss_pred HHHHHHh
Q psy13014 91 YNEALRS 97 (229)
Q Consensus 91 ~~~al~~ 97 (229)
++..+..
T Consensus 192 l~~~~~~ 198 (379)
T PF09670_consen 192 LEKLLKR 198 (379)
T ss_pred HHHHHHH
Confidence 9988775
No 419
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=70.09 E-value=12 Score=18.72 Aligned_cols=13 Identities=38% Similarity=0.577 Sum_probs=6.5
Q ss_pred cHHHHHHHHHHHH
Q psy13014 162 KLDEALADYQKIL 174 (229)
Q Consensus 162 ~~~~A~~~~~~al 174 (229)
+..+|+.+++++.
T Consensus 20 d~~~A~~~~~~Aa 32 (36)
T smart00671 20 DLEKALEYYKKAA 32 (36)
T ss_pred CHHHHHHHHHHHH
Confidence 4455555555444
No 420
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=69.64 E-value=13 Score=23.35 Aligned_cols=20 Identities=10% Similarity=0.174 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhCCCcHH
Q psy13014 163 LDEALADYQKILELDPNNRD 182 (229)
Q Consensus 163 ~~~A~~~~~~al~~~p~~~~ 182 (229)
|.+|++.|..+++..|+...
T Consensus 29 Y~~aie~l~~~lk~e~d~~~ 48 (77)
T cd02683 29 YQEGIDLLMQVLKGTKDEAK 48 (77)
T ss_pred HHHHHHHHHHHHhhCCCHHH
Confidence 34455555555566775543
No 421
>KOG1497|consensus
Probab=69.63 E-value=32 Score=28.13 Aligned_cols=96 Identities=20% Similarity=0.133 Sum_probs=67.9
Q ss_pred hHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc--------HHHHHHHHHHHHhcccHHHHHHHHHHH--HH
Q psy13014 106 RAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY--------LKVYQRRARLYQQSDKLDEALADYQKI--LE 175 (229)
Q Consensus 106 ~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~a--l~ 175 (229)
...+...+|.+ |.+.+++..|-..+. ++..+... ...+..+|.+|...++..+|..+..++ +.
T Consensus 102 v~~irl~LAsi------YE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~ 174 (399)
T KOG1497|consen 102 VASIRLHLASI------YEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQ 174 (399)
T ss_pred HHHHHHHHHHH------HHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 46677888999 999999999888775 44444311 235778899999999999988888775 34
Q ss_pred hCCCcHHHHHHhccCch---HHHhhhhhcccccccc
Q psy13014 176 LDPNNRDAYVATKVSPD---LKLKEKNGATKLSPDV 208 (229)
Q Consensus 176 ~~p~~~~~~~~l~~~~~---~~~~~~~~a~~~~~~~ 208 (229)
.+..+......+..|+. ...+++.+|.+.|.+.
T Consensus 175 a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyel 210 (399)
T KOG1497|consen 175 AESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYEL 210 (399)
T ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577777777766663 3345566666655544
No 422
>PRK11619 lytic murein transglycosylase; Provisional
Probab=68.41 E-value=95 Score=28.27 Aligned_cols=93 Identities=9% Similarity=-0.057 Sum_probs=53.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHH
Q psy13014 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVY 150 (229)
Q Consensus 71 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (229)
...+|......+...+|...+..+.....+ .......... -...++++.+..++...-..........
T Consensus 282 ~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~------~~~~e~r~r~------Al~~~dw~~~~~~i~~L~~~~~~~~rw~ 349 (644)
T PRK11619 282 RDIVAWRLMGNDVTDEQAKWRDDVIMRSQS------TSLLERRVRM------ALGTGDRRGLNTWLARLPMEAKEKDEWR 349 (644)
T ss_pred HHHHHHHHHhccCCHHHHHHHHhcccccCC------cHHHHHHHHH------HHHccCHHHHHHHHHhcCHhhccCHhhH
Confidence 344444333333245565555554433211 2223333334 4467788777777766433334456778
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 151 QRRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 151 ~~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
|-+|.++..+|+.++|...|+++..
T Consensus 350 YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 350 YWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888888888888888888888743
No 423
>KOG2561|consensus
Probab=68.37 E-value=72 Score=27.41 Aligned_cols=103 Identities=16% Similarity=0.112 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc------hhhHHHHHhHhhhhhhhHHhhccCCh----------HH
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCS------VSRAVFYANRSAALEKLASYLSLEKP----------DQ 131 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~~~~~lg~~~~~~~~~~~~~~~----------~~ 131 (229)
...++..|.+......|.+|+.++-.|-+.+...+. ++-+.+-..+-+| |+.+.+. ..
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWC------YfrLknitcL~DAe~RL~r 236 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWC------YFRLKNITCLPDAEVRLVR 236 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhhe------ehhhcccccCChHHHHHHH
Confidence 345677888899999999999888666554322211 0114555566777 7776552 22
Q ss_pred HHHHHHHH--------HhcC-CCcH------HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 132 SILACSKA--------ITLN-PSYL------KVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 132 A~~~~~~a--------l~~~-p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
|...|.++ ..+. |..+ ..+..-|.+.+.+|+-++|.++++.+...
T Consensus 237 a~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 237 ARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred HHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 22333222 1222 2222 23445599999999999999999988643
No 424
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=68.16 E-value=19 Score=22.31 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
..+...|...-..|++++|+.+|..++..
T Consensus 7 ~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 7 IELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455566666677777777777666554
No 425
>KOG0687|consensus
Probab=67.54 E-value=69 Score=26.40 Aligned_cols=108 Identities=7% Similarity=0.044 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC-chhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSC-SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
..+-.+++.+.|..|.+.|+-+.|.+.+.+.....-.-. .-+..-....+|.. |....-..+-++-.+..++.
T Consensus 100 E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglf------y~D~~lV~~~iekak~liE~ 173 (393)
T KOG0687|consen 100 ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLF------YLDHDLVTESIEKAKSLIEE 173 (393)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHh------hccHHHHHHHHHHHHHHHHh
Confidence 456678999999999999999999999888776543211 11123344556666 65555556667777777776
Q ss_pred CCCcHH---HHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 143 NPSYLK---VYQRRARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 143 ~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
..+... .-...|.......++.+|-..|-.++..-
T Consensus 174 GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 174 GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 654432 22334666677788888888887777543
No 426
>KOG1464|consensus
Probab=67.49 E-value=28 Score=27.87 Aligned_cols=50 Identities=14% Similarity=0.303 Sum_probs=40.9
Q ss_pred cCChHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 126 LEKPDQSILACSKAITLNPSYL----KVYQRRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 126 ~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
....++|+..|.+++++.|.-. +++-..-.+.+.+++|++-...|++.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 5689999999999999988753 4666777888899999888888877664
No 427
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=67.28 E-value=20 Score=22.15 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
.+...|..+-..|++++|+.+|..++..
T Consensus 10 ~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 10 ELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555566667777777777666553
No 428
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=66.89 E-value=20 Score=22.62 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
+......|..+-..|+.++|+.+|++++..
T Consensus 8 A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 8 AFEEISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 334445555555566666666666666654
No 429
>KOG1463|consensus
Probab=66.60 E-value=57 Score=27.05 Aligned_cols=100 Identities=17% Similarity=0.126 Sum_probs=68.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC-----C
Q psy13014 71 LKDEGNALFRLNQWSESLAKYNEALRSCPR-SCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN-----P 144 (229)
Q Consensus 71 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p 144 (229)
-..+...|+..++|.+|+......++--.. +.+....+++..-..+ |+.+.+..+|...+..|-... |
T Consensus 131 earli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~------y~~l~Nl~KakasLTsART~AnaiYcp 204 (411)
T KOG1463|consen 131 EARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKA------YHALRNLPKAKASLTSARTTANAIYCP 204 (411)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHH------HHHHhcchhHHHHHHHHHHhhcccccC
Confidence 346777899999999999988777654211 1111235667777778 888999999888877664431 3
Q ss_pred CcHH--HHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 145 SYLK--VYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 145 ~~~~--~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
.... .-..-|..+..-.+|.-|..+|-.+++-
T Consensus 205 PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEg 238 (411)
T KOG1463|consen 205 PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEG 238 (411)
T ss_pred HHHHHHHHHhccceeecccccchHHHHHHHHHcc
Confidence 2222 2233477777778999999999998865
No 430
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=65.86 E-value=18 Score=22.56 Aligned_cols=30 Identities=20% Similarity=0.080 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
+..+...|...-..|+|++|+..|..+++.
T Consensus 6 ai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 6 AHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 334555666667788999999999888876
No 431
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=65.55 E-value=15 Score=17.93 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 150 YQRRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 150 ~~~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
|..+-..+.+.|++++|.+.|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455566677777777777766543
No 432
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=63.68 E-value=15 Score=29.20 Aligned_cols=98 Identities=19% Similarity=0.165 Sum_probs=62.7
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhH----HhhccCChHHHHHHHHHHHhcCCCc------H
Q psy13014 78 LFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLA----SYLSLEKPDQSILACSKAITLNPSY------L 147 (229)
Q Consensus 78 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~----~~~~~~~~~~A~~~~~~al~~~p~~------~ 147 (229)
++..++.-.|+..|...+.-.|.+ ..+...-+.|++++= .+...-..+.|.+++++|+-..... .
T Consensus 5 L~D~~e~L~~L~~~~~~~~~~~~N-----L~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG 79 (368)
T COG5091 5 LYDEKEPLKALHLYDEILKGSPTN-----LTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIG 79 (368)
T ss_pred hhcccchHHHhhhhhhhhccCCcc-----eeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceee
Confidence 445556667777777777777766 222222222211111 0223345678999999998764322 2
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCc
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELDPNN 180 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 180 (229)
-+-++.+..++.+++|+.|..+|.+|..+.-++
T Consensus 80 ~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 80 LVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred eehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 356778999999999999999999999886543
No 433
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=62.99 E-value=24 Score=31.10 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHH
Q psy13014 65 EQTAISLKDEGNALFR--LNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAI 140 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al 140 (229)
...|.++-++|...-. ...-..++..|.+++............-.|..+|.. +++.++|.+|+..+.++-
T Consensus 274 ~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~------~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 274 ARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGY------YYRHKRYREALRSWAEAA 345 (618)
T ss_dssp TT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHH------HHHTT-HHHHHHHHHHHH
T ss_pred hhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhH------HHHHHHHHHHHHHHHHHH
Confidence 3556666666665433 233456677888887763222222236678889999 999999999998887764
No 434
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=62.90 E-value=17 Score=30.46 Aligned_cols=44 Identities=14% Similarity=-0.023 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhccc------------HHHHHHHHHHHH
Q psy13014 129 PDQSILACSKAITLNPSYLKVYQRRARLYQQSDK------------LDEALADYQKIL 174 (229)
Q Consensus 129 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al 174 (229)
...|+.++++|.. .++|.+|..+|.++..+|+ |.+|...+.+|-
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN 389 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKAN 389 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHh
Confidence 4567777777765 5667788888888887775 455555555554
No 435
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=62.87 E-value=28 Score=21.44 Aligned_cols=27 Identities=26% Similarity=0.242 Sum_probs=17.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 71 LKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 71 ~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
+...|...-..|++++|+.+|..++..
T Consensus 9 l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 9 LIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555566667777777777776654
No 436
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=61.77 E-value=20 Score=22.71 Aligned_cols=17 Identities=24% Similarity=0.141 Sum_probs=10.2
Q ss_pred ChHHHHHHHHHHHhcCC
Q psy13014 128 KPDQSILACSKAITLNP 144 (229)
Q Consensus 128 ~~~~A~~~~~~al~~~p 144 (229)
.|+.|.+..++++..+.
T Consensus 4 ~~~~A~~~I~kaL~~dE 20 (79)
T cd02679 4 YYKQAFEEISKALRADE 20 (79)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 45666666666666543
No 437
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=61.74 E-value=1.1e+02 Score=26.63 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=40.8
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
+...|++.-|-..|+-.+...|+++..-...-..+...++-..|...|++++..
T Consensus 442 ~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 442 YYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred HHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 556788888888888888888887776666667777777777777777766644
No 438
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=61.52 E-value=40 Score=29.76 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh------CCCcHHHHHHhccCc
Q psy13014 130 DQSILACSKAITL-----NPSYLKVYQRRARLYQQSDKLDEALADYQKILEL------DPNNRDAYVATKVSP 191 (229)
Q Consensus 130 ~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~ 191 (229)
..+++.|.+||.. +..+...|..+|-.+++.++|.+|+..+-.+-.. ..+|.++|..+-.+.
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleIA 368 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEIA 368 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHHH
Confidence 3445555555543 3456677889999999999999999999887543 334556666555444
No 439
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=61.40 E-value=29 Score=21.60 Aligned_cols=28 Identities=7% Similarity=0.020 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
.+...|...-..|+|++|..+|..++..
T Consensus 8 ~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 8 ELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3445555566667777777777777664
No 440
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=61.32 E-value=1.1e+02 Score=26.32 Aligned_cols=118 Identities=19% Similarity=0.137 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---CchhhHHHHHhHhhhhh-hhHH---hhc----cCChHHHHH-
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRS---CSVSRAVFYANRSAALE-KLAS---YLS----LEKPDQSIL- 134 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~lg~~~~-~~~~---~~~----~~~~~~A~~- 134 (229)
........|..++..|+|.+|+..|+..+..-|-. ...+...+.-.+..|-+ =+|- ..+ ....+....
T Consensus 203 ~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~ 282 (422)
T PF06957_consen 203 SLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRN 282 (422)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHH
Confidence 33445668889999999999999999998874422 11222233333333300 0110 001 112222222
Q ss_pred ----HHHHHHhcCCCcHHHHHHHHHH-HHhcccHHHHHHHHHHHHHhCCCcHHHH
Q psy13014 135 ----ACSKAITLNPSYLKVYQRRARL-YQQSDKLDEALADYQKILELDPNNRDAY 184 (229)
Q Consensus 135 ----~~~~al~~~p~~~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~ 184 (229)
.|-.-.++.|.|...-.+.|+. .++.++|..|-...++.++++|....+.
T Consensus 283 lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~ 337 (422)
T PF06957_consen 283 LELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAE 337 (422)
T ss_dssp HHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHH
Confidence 2222234556665554555444 4588999999999999999999876543
No 441
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=60.74 E-value=49 Score=23.02 Aligned_cols=75 Identities=17% Similarity=0.130 Sum_probs=51.7
Q ss_pred HHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc---------------HHHHHHHHHHHHhcccHHHHHHHHHHH-
Q psy13014 110 YANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY---------------LKVYQRRARLYQQSDKLDEALADYQKI- 173 (229)
Q Consensus 110 ~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a- 173 (229)
+..+|.. .++.+++-.++-+|..|+.+..+- +....++|..+...|+.+-.+++++-|
T Consensus 4 htllAd~------a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 4 HTLLADQ------AFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred HHHHHHH------HhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence 4556777 888888888888888887653111 235778999999999999888888654
Q ss_pred ---HHhCCCcH-----HHHHHhccC
Q psy13014 174 ---LELDPNNR-----DAYVATKVS 190 (229)
Q Consensus 174 ---l~~~p~~~-----~~~~~l~~~ 190 (229)
+.+-|.-+ .....+|-+
T Consensus 78 E~VltLiPQCp~~~C~afi~sLGCC 102 (140)
T PF10952_consen 78 EKVLTLIPQCPNTECEAFIDSLGCC 102 (140)
T ss_pred HHHHHhccCCCCcchHHHHHhhhcc
Confidence 45555533 234455544
No 442
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=60.44 E-value=59 Score=23.13 Aligned_cols=62 Identities=16% Similarity=0.094 Sum_probs=39.9
Q ss_pred HHHHHHH-HHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 71 LKDEGNA-LFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 71 ~~~~g~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
+..+|.- ...+|+-++--+.+....+....+ +.....+|.+ |.++|+..+|-+.+.+|.+..
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~-----p~~L~kia~A------y~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEIN-----PEFLVKIANA------YKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S------HHHHHHHHHH------HHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCC-----HHHHHHHHHH------HHHhcchhhHHHHHHHHHHhc
Confidence 3444443 345566666556666666544444 8999999999 999999999999999988754
No 443
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=59.84 E-value=32 Score=21.38 Aligned_cols=28 Identities=18% Similarity=0.096 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
.+...|...-..|++++|+.+|..++..
T Consensus 8 ~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 8 ALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445556666667777777777666654
No 444
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=59.77 E-value=1.1e+02 Score=25.89 Aligned_cols=70 Identities=6% Similarity=-0.113 Sum_probs=47.4
Q ss_pred HHHHHHHHHH--HHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHH
Q psy13014 64 LEQTAISLKD--EGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACS 137 (229)
Q Consensus 64 ~~~~~~~~~~--~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~ 137 (229)
.|........ .+..+++.++|..|...|..+....+..........+..++.++. +...-++++|.+.++
T Consensus 124 nP~~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~----~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 124 DPYNVEGNTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYL----HWDRFEHEEALDYLN 195 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHH----HHHccCHHHHHHHHh
Confidence 3444444433 555889999999999999999988654322223555666666621 456778888888888
No 445
>KOG4151|consensus
Probab=59.13 E-value=24 Score=32.18 Aligned_cols=82 Identities=17% Similarity=0.237 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHH
Q psy13014 63 KLEQTAISLKDEGNALFR--LNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAI 140 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al 140 (229)
.....+....+.+.++.+ .++|.+++.-..-++...|.. ..+...++.+ |...+..+-|++...-..
T Consensus 86 ~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i-----~~~Ll~r~~~------y~al~k~d~a~rdl~i~~ 154 (748)
T KOG4151|consen 86 DHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRI-----SKALLKRARK------YEALNKLDLAVRDLRIVE 154 (748)
T ss_pred cchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchH-----HHHHhhhhhH------HHHHHHHHHHHHHHHHHh
Confidence 344556666677776655 678999999999999999987 7788889999 999999999999988888
Q ss_pred hcCCCcHHHHHHHHH
Q psy13014 141 TLNPSYLKVYQRRAR 155 (229)
Q Consensus 141 ~~~p~~~~~~~~la~ 155 (229)
...|.+..+.-....
T Consensus 155 ~~~p~~~~~~eif~e 169 (748)
T KOG4151|consen 155 KMDPSNVSASEIFEE 169 (748)
T ss_pred cCCCCcchHHHHHHH
Confidence 889998665443333
No 446
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=59.11 E-value=33 Score=28.53 Aligned_cols=47 Identities=13% Similarity=0.078 Sum_probs=41.6
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHH
Q psy13014 81 LNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSK 138 (229)
Q Consensus 81 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~ 138 (229)
....-+|+..++.++..+|.+ ..+...+..+ |..+|-...|...|..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n-----~~~~LlLvrl------Y~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHN-----YQLKLLLVRL------YSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCc-----HHHHHHHHHH------HHHcCCHHHHHHHHHh
Confidence 455678889999999999999 9999999999 9999999999998865
No 447
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=59.09 E-value=30 Score=25.88 Aligned_cols=48 Identities=4% Similarity=-0.018 Sum_probs=34.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHH
Q psy13014 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134 (229)
Q Consensus 75 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~ 134 (229)
..++.+.|.|++|.+.+++.+. +|++ ......|..+ -...+.+..-++
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~-----~~~r~kL~~I------I~~Kd~~h~~lq 165 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPES-----QKLRMKLLMI------IREKDPAHPVLQ 165 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCc-----hhHHHHHHHH------HHccccccHHHH
Confidence 3478999999999999999999 7777 5556666666 444444444433
No 448
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=59.08 E-value=27 Score=21.53 Aligned_cols=15 Identities=7% Similarity=0.220 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhCCC
Q psy13014 165 EALADYQKILELDPN 179 (229)
Q Consensus 165 ~A~~~~~~al~~~p~ 179 (229)
+|++.|.+++...|+
T Consensus 33 ~a~e~l~~~~~~~~~ 47 (77)
T smart00745 33 KAIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHHhccCCC
Confidence 344444444455554
No 449
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=59.02 E-value=97 Score=25.18 Aligned_cols=145 Identities=13% Similarity=0.012 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCCchh-hHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHH
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSC-PRSCSVS-RAVFYANRSAALEKLASYLSLEKPDQSILACSKA 139 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~a 139 (229)
...+.....+.....+|+..++..++...+..|-... .-.|.+. .+.+=..-|.. +....+|.-|-.+|-++
T Consensus 159 DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIl------hcdd~dyktA~SYF~Ea 232 (421)
T COG5159 159 DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGIL------HCDDRDYKTASSYFIEA 232 (421)
T ss_pred cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccce------eeccccchhHHHHHHHH
Confidence 4555666777777888888888888877776665442 2222211 12222333555 66778999999999888
Q ss_pred HhcCC---CcHHH-----HHHHHHHHHhcccHHHHHHHHHHHHH-hCCCcHHHHHHhccCch-HHHhhhhhccccccccc
Q psy13014 140 ITLNP---SYLKV-----YQRRARLYQQSDKLDEALADYQKILE-LDPNNRDAYVATKVSPD-LKLKEKNGATKLSPDVF 209 (229)
Q Consensus 140 l~~~p---~~~~~-----~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~-~~~~~~~~a~~~~~~~~ 209 (229)
++-.. .+.++ |..+..+..+.-.--+++-.-+.+++ .+....++....+..+. +.+.++..|+++|..-+
T Consensus 233 ~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el 312 (421)
T COG5159 233 LEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDEL 312 (421)
T ss_pred HhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHh
Confidence 87532 23333 22333333332222223222233333 34445556655555553 45667888888887766
Q ss_pred -ccC
Q psy13014 210 -LHP 212 (229)
Q Consensus 210 -~~p 212 (229)
-||
T Consensus 313 ~~D~ 316 (421)
T COG5159 313 HQDS 316 (421)
T ss_pred ccCH
Confidence 554
No 450
>KOG0276|consensus
Probab=58.98 E-value=35 Score=30.50 Aligned_cols=49 Identities=12% Similarity=0.065 Sum_probs=37.1
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
..++|+++.|.+...+ .++..-|-.+|.+....+++..|.++|.++..+
T Consensus 647 al~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 3457888887765544 356667888999999999999999999887544
No 451
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=58.47 E-value=32 Score=23.71 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=13.1
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCCcH
Q psy13014 153 RARLYQQSDKLDEALADYQKILELDPNNR 181 (229)
Q Consensus 153 la~~~~~~~~~~~A~~~~~~al~~~p~~~ 181 (229)
+|..+...|++++|..+|-+|+...|.-.
T Consensus 69 lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 69 LGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 34444444444444444444444444433
No 452
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=58.42 E-value=25 Score=21.96 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=15.3
Q ss_pred HHHHHhcccHHHHHHHHHHHHHh
Q psy13014 154 ARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 154 a~~~~~~~~~~~A~~~~~~al~~ 176 (229)
|.-.-..|+|++|+.+|..+++.
T Consensus 13 A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 13 AFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHhhHhhhHHHHHHHHHHHHHH
Confidence 33344567788888888777754
No 453
>PF15469 Sec5: Exocyst complex component Sec5
Probab=57.19 E-value=60 Score=23.90 Aligned_cols=65 Identities=25% Similarity=0.332 Sum_probs=37.3
Q ss_pred hhccCChHHHHHHHHHHHhcCCCc---HHH----HHH--------HHHHHHhc----ccHHHHHHHHHHHHHhCCCcHHH
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSY---LKV----YQR--------RARLYQQS----DKLDEALADYQKILELDPNNRDA 183 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~---~~~----~~~--------la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~ 183 (229)
+...|+|+.++..|.++-.+.... ... |.. ...++..+ ...++....+...++++|+...+
T Consensus 96 ~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~~s~~~~~~~i~~Ll~L~~~~dPi 175 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPPSSQEEFLKLIRKLLELNVEEDPI 175 (182)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCCCCHH
Confidence 567899999999999987764332 111 110 11111111 24566666666677777766555
Q ss_pred HHHh
Q psy13014 184 YVAT 187 (229)
Q Consensus 184 ~~~l 187 (229)
|..+
T Consensus 176 ~~~l 179 (182)
T PF15469_consen 176 WYWL 179 (182)
T ss_pred HHHH
Confidence 5543
No 454
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=57.03 E-value=35 Score=28.38 Aligned_cols=47 Identities=23% Similarity=0.218 Sum_probs=42.1
Q ss_pred CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy13014 127 EKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKI 173 (229)
Q Consensus 127 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 173 (229)
...-+|+..++.++...|.|......+..+|..+|-...|...|...
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 34568899999999999999999999999999999999999988653
No 455
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=56.12 E-value=33 Score=24.61 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCC
Q psy13014 70 SLKDEGNALFRLN-QWSESLAKYNEALRSCPRS 101 (229)
Q Consensus 70 ~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~ 101 (229)
.-..+|..+...| +..+|..+|-+|+.+.|..
T Consensus 92 ~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP 124 (148)
T TIGR00985 92 QEVQLGEELMAQGTNVDEGAVHFYNALKVYPQP 124 (148)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCH
Confidence 3457899999999 9999999999999999985
No 456
>KOG1538|consensus
Probab=56.12 E-value=1.6e+02 Score=26.90 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=27.7
Q ss_pred hccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy13014 124 LSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKI 173 (229)
Q Consensus 124 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 173 (229)
...+++.+|....++--+. -+.+|+..|.-+....++++|.+.|.+|
T Consensus 784 ve~~~W~eAFalAe~hPe~---~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 784 VETQRWDEAFALAEKHPEF---KDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred eecccchHhHhhhhhCccc---cccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 3445566655554442222 2345777777777777777777776655
No 457
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=55.56 E-value=35 Score=21.12 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=9.5
Q ss_pred HHHHhcccHHHHHHHHHHHH
Q psy13014 155 RLYQQSDKLDEALADYQKIL 174 (229)
Q Consensus 155 ~~~~~~~~~~~A~~~~~~al 174 (229)
.-.-..|++++|+.+|.+++
T Consensus 14 v~~D~~g~y~eA~~~Y~~ai 33 (75)
T cd02678 14 IEEDNAGNYEEALRLYQHAL 33 (75)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 33444455555555444444
No 458
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=55.55 E-value=28 Score=17.81 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHH
Q psy13014 129 PDQSILACSKAITLNPSYLKVYQRRA 154 (229)
Q Consensus 129 ~~~A~~~~~~al~~~p~~~~~~~~la 154 (229)
++.|...|++.+...|+ +..|...|
T Consensus 3 ~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred HHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 45566666666665543 44444443
No 459
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=55.18 E-value=25 Score=17.28 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHH
Q psy13014 133 ILACSKAITLNPSYLKVYQRRARLY 157 (229)
Q Consensus 133 ~~~~~~al~~~p~~~~~~~~la~~~ 157 (229)
++...+++..+|.+..+|..+-.+.
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll 27 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLL 27 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHH
Confidence 4455566666666666655554443
No 460
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=54.51 E-value=1.1e+02 Score=24.61 Aligned_cols=96 Identities=18% Similarity=0.231 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH------
Q psy13014 84 WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLY------ 157 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~------ 157 (229)
.+.-+.....+++.+|.+ ..+|..+-.+++ .+-..++..-....++.+..+|.|--.|...-.+.
T Consensus 90 ldneld~~~~~lk~~PK~-----YqiW~HR~~~Le----~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~ 160 (328)
T COG5536 90 LDNELDFLDEALKDNPKN-----YQIWHHRQWMLE----LFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDL 160 (328)
T ss_pred hhcHHHHHHHHHhcCCch-----hhhhHHHHHHHH----hCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhh
Confidence 466677788999999999 899998888722 23336688888889999999999977766554444
Q ss_pred HhcccHHHHHHHHHHHHHhCCCcHHHHHHhc
Q psy13014 158 QQSDKLDEALADYQKILELDPNNRDAYVATK 188 (229)
Q Consensus 158 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 188 (229)
..-..+....++-..++..|+.+..+|...-
T Consensus 161 ~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~ 191 (328)
T COG5536 161 FNFSDLKHELEYTTSLIETDIYNNSAWHHRY 191 (328)
T ss_pred ccchhHHHHHHhHHHHHhhCCCChHHHHHHH
Confidence 4445566667777888999999999988773
No 461
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=53.85 E-value=1.6e+02 Score=26.10 Aligned_cols=80 Identities=11% Similarity=-0.017 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhccc
Q psy13014 83 QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK 162 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 162 (229)
.+.--.-.+.+.+....+ -.++..++.| |... ..++=...+++.++.+=++...-..++..|.+ ++
T Consensus 81 k~~~veh~c~~~l~~~e~------kmal~el~q~------y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik 146 (711)
T COG1747 81 KNQIVEHLCTRVLEYGES------KMALLELLQC------YKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IK 146 (711)
T ss_pred HHHHHHHHHHHHHHhcch------HHHHHHHHHH------HHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hc
Confidence 333333445666665443 6788889999 8776 66777888899999998888888888888887 77
Q ss_pred HHHHHHHHHHHHHh
Q psy13014 163 LDEALADYQKILEL 176 (229)
Q Consensus 163 ~~~A~~~~~~al~~ 176 (229)
.+.+...|.+++..
T Consensus 147 ~sk~a~~f~Ka~yr 160 (711)
T COG1747 147 KSKAAEFFGKALYR 160 (711)
T ss_pred hhhHHHHHHHHHHH
Confidence 78888888888743
No 462
>KOG4056|consensus
Probab=53.64 E-value=44 Score=23.60 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=28.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy13014 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRS 101 (229)
Q Consensus 71 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 101 (229)
-..+|+.++.+|+++++..++-.|+.+.|..
T Consensus 84 qv~lGE~L~~qg~~e~ga~h~~nAi~vcgqp 114 (143)
T KOG4056|consen 84 QVQLGEELLAQGNEEEGAEHLANAIVVCGQP 114 (143)
T ss_pred HHHhHHHHHHccCHHHHHHHHHHHHhhcCCH
Confidence 4478999999999999999999999999886
No 463
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=53.07 E-value=40 Score=20.70 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=8.7
Q ss_pred HHhcccHHHHHHHHHHHH
Q psy13014 157 YQQSDKLDEALADYQKIL 174 (229)
Q Consensus 157 ~~~~~~~~~A~~~~~~al 174 (229)
.-..|++++|+.+|..++
T Consensus 16 ~D~~g~~~~Al~~Y~~a~ 33 (75)
T cd02656 16 EDEDGNYEEALELYKEAL 33 (75)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 333455555555554444
No 464
>KOG1497|consensus
Probab=52.45 E-value=1.3e+02 Score=24.77 Aligned_cols=103 Identities=13% Similarity=0.090 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CCc-hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh-
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPR--SCS-VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT- 141 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~-~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~- 141 (229)
.-......+|.+|-+.++|.+|-..+.- +.++.. ..+ .-....+..+|.. |...++-.+|..+.+++--
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarl------yLe~~d~veae~~inRaSil 173 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARL------YLEDDDKVEAEAYINRASIL 173 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHH------HHhcCcHHHHHHHHHHHHHh
Confidence 3456778899999999999998877632 222221 111 1235677788888 9999999999999988743
Q ss_pred -cCCCcHHHHHH----HHHHHHhcccHHHHHHHHHHHHH
Q psy13014 142 -LNPSYLKVYQR----RARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 142 -~~p~~~~~~~~----la~~~~~~~~~~~A~~~~~~al~ 175 (229)
.+..|...... .|.++-..++|=+|-..|-+...
T Consensus 174 ~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 174 QAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455554443 35555666777777776665543
No 465
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.24 E-value=76 Score=21.91 Aligned_cols=64 Identities=8% Similarity=-0.077 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHH
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAI 140 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al 140 (229)
.+++....+|...+.... ++.+.|.......-... .+..|..-|.. +...|++++|.+.|..+|
T Consensus 63 ~nD~RylkiWi~ya~~~~------~~~~if~~l~~~~IG~~---~A~fY~~wA~~------le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 63 KNDERYLKIWIKYADLSS------DPREIFKFLYSKGIGTK---LALFYEEWAEF------LEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp TT-HHHHHHHHHHHTTBS------HHHHHHHHHHHHTTSTT---BHHHHHHHHHH------HHHTT-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCccHH---HHHHHHHHHHH------HHHcCCHHHHHHHHHhhC
Confidence 356666677776665332 78888887777543221 18888889999 999999999999998875
No 466
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=52.22 E-value=28 Score=16.94 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 150 YQRRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 150 ~~~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
|..+-.++.+.|+++.|...|..-.+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455566666666666666655443
No 467
>KOG0292|consensus
Probab=51.89 E-value=2.2e+02 Score=27.11 Aligned_cols=117 Identities=17% Similarity=0.134 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---CchhhHHHHHh--------HhhhhhhhHHhhccCChHHH--HHH
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRS---CSVSRAVFYAN--------RSAALEKLASYLSLEKPDQS--ILA 135 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~--------lg~~~~~~~~~~~~~~~~~A--~~~ 135 (229)
..-...|.-....|++.+|++.|...+-.-|-. ...+.+.+... .|..++-...-+.....+++ ++.
T Consensus 992 ~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAa 1071 (1202)
T KOG0292|consen 992 NKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAA 1071 (1202)
T ss_pred HHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHH
Confidence 345567777888999999999999998875532 11111222211 12221111112223445555 444
Q ss_pred HHHHHhcCCCcHH-HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHH
Q psy13014 136 CSKAITLNPSYLK-VYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185 (229)
Q Consensus 136 ~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 185 (229)
|-.-..+.|-+.. ++..--.++++++++..|-....+.+++.|..+.+..
T Consensus 1072 YFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1072 YFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence 4444566776644 3444456788999999999999999999998877654
No 468
>KOG0292|consensus
Probab=51.64 E-value=1.1e+02 Score=28.93 Aligned_cols=116 Identities=15% Similarity=0.140 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH------------ccCH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFR------------LNQW 84 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~ 84 (229)
..-.+..|.-+... |++.+|.+.|...+..+...- ...+.....+..+..++..|.. ....
T Consensus 991 l~~kl~~gy~ltt~-gKf~eAie~Frsii~~i~l~v------vd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~ 1063 (1202)
T KOG0292|consen 991 LNKKLQKGYKLTTE-GKFGEAIEKFRSIIYSIPLLV------VDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNL 1063 (1202)
T ss_pred HHHHHHHHHhhhcc-CcHHHHHHHHHHHHhheeEEE------ecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchH
Confidence 44556677778888 999999999987764432110 0111222333334444433322 1223
Q ss_pred HHH--HHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHH
Q psy13014 85 SES--LAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKV 149 (229)
Q Consensus 85 ~~A--~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (229)
+++ +..|=.-..+.|-+ +..+...--.+ +++++++..|.....+.+++.|..+.+
T Consensus 1064 ~~~~ElAaYFt~~~Lqp~H----~ilalrtA~n~------ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1064 EQQLELAAYFTHCKLQPMH----RILALRTAMNV------FFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred HHHHHHHHHhhcCCCCcHH----HHHHHHHHHHH------HHHhccHHHHHHHHHHHHhhCCCChHH
Confidence 333 22222223333332 12222222344 889999999999999999999977654
No 469
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=51.23 E-value=43 Score=20.80 Aligned_cols=19 Identities=26% Similarity=0.186 Sum_probs=9.6
Q ss_pred HHHhcccHHHHHHHHHHHH
Q psy13014 156 LYQQSDKLDEALADYQKIL 174 (229)
Q Consensus 156 ~~~~~~~~~~A~~~~~~al 174 (229)
-.-..|++++|+.+|..++
T Consensus 15 ~~D~~g~y~eA~~lY~~al 33 (75)
T cd02684 15 KKDQRGDAAAALSLYCSAL 33 (75)
T ss_pred HHHHhccHHHHHHHHHHHH
Confidence 3344455555555555554
No 470
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=50.96 E-value=28 Score=29.25 Aligned_cols=52 Identities=12% Similarity=0.058 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhcc------CChHHHHHHHHHHHhc
Q psy13014 84 WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSL------EKPDQSILACSKAITL 142 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~------~~~~~A~~~~~~al~~ 142 (229)
...|+.++++|..- +. |..|..+|.++.++|+.+.. +-|.+|...+.+|-..
T Consensus 334 ~~~Al~yL~kA~d~--dd-----PetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 334 IKKALEYLKKAQDE--DD-----PETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHHS---------TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcc--CC-----hhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 57788888888773 33 77899999997777775432 2366777777776554
No 471
>KOG1920|consensus
Probab=50.34 E-value=1.1e+02 Score=29.88 Aligned_cols=18 Identities=6% Similarity=-0.045 Sum_probs=8.9
Q ss_pred hhccCChHHHHHHHHHHH
Q psy13014 123 YLSLEKPDQSILACSKAI 140 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al 140 (229)
+..++++-+|-......+
T Consensus 1009 L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1009 LVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHcccchhHHHHHHHHh
Confidence 444555555555444433
No 472
>KOG0686|consensus
Probab=49.49 E-value=1.7e+02 Score=25.05 Aligned_cols=146 Identities=14% Similarity=0.055 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy13014 19 TIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSC 98 (229)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 98 (229)
++--+|.-|... |+++.|...|.++...= ....+....+.+.-.+..-+|+|..-..+..+|.+.-
T Consensus 152 a~~Dl~dhy~~c-G~l~~Alr~YsR~RdYC-------------Ts~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~ 217 (466)
T KOG0686|consen 152 ALEDLGDHYLDC-GQLDNALRCYSRARDYC-------------TSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTP 217 (466)
T ss_pred HHHHHHHHHHHh-ccHHHHHhhhhhhhhhh-------------cchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCc
Confidence 444556666666 88888877776533111 2334556677777778888888888877777776651
Q ss_pred CCCCc---hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc--------CCCcHHHHHHHH-HHHHhcccHH--
Q psy13014 99 PRSCS---VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL--------NPSYLKVYQRRA-RLYQQSDKLD-- 164 (229)
Q Consensus 99 p~~~~---~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la-~~~~~~~~~~-- 164 (229)
..+.. ...+.+...-|.+ .+.++.|..|..++-.+..- .|.+..+|..+. .+-+.-.++.
T Consensus 218 ~~~~~~~q~v~~kl~C~agLa------~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~ 291 (466)
T KOG0686|consen 218 DANENLAQEVPAKLKCAAGLA------NLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLN 291 (466)
T ss_pred hhhhhHHHhcCcchHHHHHHH------HHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHH
Confidence 00100 0013345555666 77788999999988766432 355555555442 2222222232
Q ss_pred -HHHHHHHHHHHhCCCcHHHH
Q psy13014 165 -EALADYQKILELDPNNRDAY 184 (229)
Q Consensus 165 -~A~~~~~~al~~~p~~~~~~ 184 (229)
..-..|+..+++.|.-.+..
T Consensus 292 vi~n~~Fk~flel~Pqlr~il 312 (466)
T KOG0686|consen 292 VIKNESFKLFLELEPQLREIL 312 (466)
T ss_pred HHcchhhhhHHhcChHHHHHH
Confidence 23356777788887655433
No 473
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=49.29 E-value=61 Score=27.70 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=20.6
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
.++.++|..|..+.++.|++.|...
T Consensus 310 ~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 310 AFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp CCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHhccHHHHHHHHHHHHHcCCCHH
Confidence 6789999999999999999998653
No 474
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=48.79 E-value=1.7e+02 Score=24.92 Aligned_cols=102 Identities=14% Similarity=0.080 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHH-hhccCC--------------hHHHH
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLAS-YLSLEK--------------PDQSI 133 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~-~~~~~~--------------~~~A~ 133 (229)
.....+|..++..++|+-|...|+.+.+-.-.+ .+|..+|.+.+=.|. .+..+. .+.|.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D------kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~ 282 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKND------KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAY 282 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc------hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHH
Confidence 467789999999999999999999988865432 334444444222221 333331 34455
Q ss_pred HHHHHH----HhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 134 LACSKA----ITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 134 ~~~~~a----l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
..|.++ ......-..+....+.++...+.+.+|...+-+....
T Consensus 283 ~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 283 YTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 555552 1112233456677778888888888877776666655
No 475
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=48.07 E-value=90 Score=21.54 Aligned_cols=31 Identities=13% Similarity=0.077 Sum_probs=18.5
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhh
Q psy13014 81 LNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAA 116 (229)
Q Consensus 81 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~ 116 (229)
.+.....+.+++..+..++.+ +..+..+..+
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~-----~~~~~~li~l 50 (140)
T smart00299 20 RNLLEELIPYLESALKLNSEN-----PALQTKLIEL 50 (140)
T ss_pred CCcHHHHHHHHHHHHccCccc-----hhHHHHHHHH
Confidence 455666666666666665544 5555555555
No 476
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=47.64 E-value=2.1e+02 Score=25.69 Aligned_cols=62 Identities=10% Similarity=0.073 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHH
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACS 137 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~ 137 (229)
.....+...+..+..+...++.++|-.+|+..+..+|++ .++..+.- +.+.|-...|...+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~------~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 37 TEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDE-------ARYEYARR------LYNTGLAKDAQLILK 98 (578)
T ss_pred ccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcc-------hHHHHHHH------HHhhhhhhHHHHHHH
Confidence 445667778888999999999999999999999999876 34444555 555565566666655
No 477
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=46.64 E-value=1.6e+02 Score=24.03 Aligned_cols=104 Identities=14% Similarity=0.107 Sum_probs=67.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCC-CCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC-----
Q psy13014 72 KDEGNALFRLNQWSESLAKYNEALRSCP-RSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS----- 145 (229)
Q Consensus 72 ~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----- 145 (229)
+..+..-.-.+.-++-++-+++.++... ++.......++.++|.. |.+.++-+.+.+++.+.++..-.
T Consensus 79 fD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aey------Y~qi~D~~ng~~~~~~~~~~a~stg~Ki 152 (412)
T COG5187 79 FDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEY------YCQIMDIQNGFEWMRRLMRDAMSTGLKI 152 (412)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH------HHHHhhhhhHHHHHHHHHHHHHhcccch
Confidence 3344443444555666666766555432 33334467889999999 88999988888888777654321
Q ss_pred -cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH
Q psy13014 146 -YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181 (229)
Q Consensus 146 -~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 181 (229)
-.-.-.++|.+|....-.++.++.....++...+..
T Consensus 153 Dv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 153 DVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 122445677777777777888888877777766544
No 478
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=46.05 E-value=1.1e+02 Score=28.69 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=12.1
Q ss_pred HHHHHHHHhcccHHHHHHHHHHH
Q psy13014 151 QRRARLYQQSDKLDEALADYQKI 173 (229)
Q Consensus 151 ~~la~~~~~~~~~~~A~~~~~~a 173 (229)
...|.+|...|++.+|...|+.|
T Consensus 939 ~~aa~aye~~gK~~Ea~gay~sA 961 (1243)
T COG5290 939 ISAAKAYEVEGKYIEAHGAYDSA 961 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555444
No 479
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=45.29 E-value=43 Score=17.41 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhccc---HHHHHHHHHHHHHhC
Q psy13014 148 KVYQRRARLYQQSDK---LDEALADYQKILELD 177 (229)
Q Consensus 148 ~~~~~la~~~~~~~~---~~~A~~~~~~al~~~ 177 (229)
.+-+++|.++.+... ..+++..++..+..+
T Consensus 2 qt~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~~ 34 (35)
T PF14852_consen 2 QTQFNYAWGLVKSNNREDQQEGIALLEELYRDE 34 (35)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHCCCS
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 355677777776653 455666666655443
No 480
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=45.24 E-value=1.6e+02 Score=23.64 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=68.7
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChH----HHHHHHHHHHhcCCCcHHHHH
Q psy13014 76 NALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPD----QSILACSKAITLNPSYLKVYQ 151 (229)
Q Consensus 76 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~----~A~~~~~~al~~~p~~~~~~~ 151 (229)
..+.+.++|++=-..+.+......++......-.....+.. .+...... .-.+.++.=++-.|++.-++.
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~------l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~L 81 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSST------LFDMDSVVDAWQARLAVLKAWVAACPKSYHAHL 81 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhcc------ccCcchhhhHHHhHHHHHHHHHHHCCCChHHHH
Confidence 45667888888888888877654332111111111111111 11221111 245555656778999999888
Q ss_pred HHHHHHHhc----------------------ccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 152 RRARLYQQS----------------------DKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 152 ~la~~~~~~----------------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.+|..+... .-.+.|+..+.+++.++|....+...+-.+.
T Consensus 82 a~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s 143 (277)
T PF13226_consen 82 AMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINIS 143 (277)
T ss_pred HHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 888887653 2357899999999999999998887776665
No 481
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.96 E-value=97 Score=20.73 Aligned_cols=42 Identities=17% Similarity=0.102 Sum_probs=34.8
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHH
Q psy13014 144 PSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185 (229)
Q Consensus 144 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 185 (229)
+--+-.+-.+|.+|.+.|+-+.|+..|+.--.+-|+......
T Consensus 69 ~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmD 110 (121)
T COG4259 69 AVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMD 110 (121)
T ss_pred CCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHH
Confidence 334667888999999999999999999998888888765443
No 482
>KOG2114|consensus
Probab=43.34 E-value=2.7e+02 Score=26.28 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
.....++...|..++..|++++|...|-+.+..
T Consensus 365 d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 365 DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 356678889999999999999999999888765
No 483
>PF15469 Sec5: Exocyst complex component Sec5
Probab=40.24 E-value=1.4e+02 Score=21.86 Aligned_cols=75 Identities=8% Similarity=0.121 Sum_probs=39.1
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCC--CchhhHHHHHhHhhhhhhhHH--hhc----cCChHHHHHHHHHHHhcCCCcHHH
Q psy13014 78 LFRLNQWSESLAKYNEALRSCPRS--CSVSRAVFYANRSAALEKLAS--YLS----LEKPDQSILACSKAITLNPSYLKV 149 (229)
Q Consensus 78 ~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~lg~~~~~~~~--~~~----~~~~~~A~~~~~~al~~~p~~~~~ 149 (229)
+...|+|+.++..|.++-.+.... .......+|...-.+...... +.. ....++........++++|..-.+
T Consensus 96 ~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~~s~~~~~~~i~~Ll~L~~~~dPi 175 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPPSSQEEFLKLIRKLLELNVEEDPI 175 (182)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCCCCHH
Confidence 467899999999999998875443 110001111111111000000 111 135667777777778887765444
Q ss_pred HHH
Q psy13014 150 YQR 152 (229)
Q Consensus 150 ~~~ 152 (229)
|..
T Consensus 176 ~~~ 178 (182)
T PF15469_consen 176 WYW 178 (182)
T ss_pred HHH
Confidence 443
No 484
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=40.14 E-value=1.2e+02 Score=20.86 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=36.3
Q ss_pred HHHHHHHHHHh--cCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy13014 131 QSILACSKAIT--LNPSYLKVYQRRARLYQQSDKLDEALADYQKIL 174 (229)
Q Consensus 131 ~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 174 (229)
.+.+.|..... +.-..+..|...|..+...|++++|.+.|+.++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 77777777665 456778889999999999999999999999875
No 485
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.53 E-value=89 Score=23.47 Aligned_cols=37 Identities=5% Similarity=0.075 Sum_probs=26.8
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQS 160 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 160 (229)
+++.|.+++|.+.+++... +|++...-..+..+-...
T Consensus 121 Cm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 121 CMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcc
Confidence 6788999999999999888 777766644455444333
No 486
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.75 E-value=2.3e+02 Score=23.19 Aligned_cols=100 Identities=18% Similarity=0.123 Sum_probs=67.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-CchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc-----CC
Q psy13014 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRS-CSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL-----NP 144 (229)
Q Consensus 71 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p 144 (229)
-..+...+++.|+|.+|+....-.+.--... .+.....++..-..+ |....+..++...+..|-.. .|
T Consensus 128 e~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKv------yh~irnv~KskaSLTaArt~Ans~YCP 201 (421)
T COG5159 128 ECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKV------YHEIRNVSKSKASLTAARTLANSAYCP 201 (421)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHH------HHHHHhhhhhhhHHHHHHHHhhccCCC
Confidence 3456778899999999999987776542111 111236677777888 88888888777766555433 24
Q ss_pred CcHHHH--HHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 145 SYLKVY--QRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 145 ~~~~~~--~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
....+- ..-|..+..-.+|.-|..+|-.+++-
T Consensus 202 pqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 202 PQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred HHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 443332 23377777888899999999888764
No 487
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=37.01 E-value=2.4e+02 Score=23.56 Aligned_cols=70 Identities=19% Similarity=0.095 Sum_probs=47.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhC--CCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHH
Q psy13014 74 EGNALFRLNQWSESLAKYNEALRSC--PRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQ 151 (229)
Q Consensus 74 ~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 151 (229)
.+.+.....-...++...+.....- ..+ ..++..+|.. +.++|+.++|-..|++++.+.++.....+
T Consensus 335 RAVAla~~~Gp~agLa~ve~L~~~~~L~gy-----~~~h~~Radl------L~rLgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 335 RAVALAMREGPAAGLAMVEALLARPRLDGY-----HLYHAARADL------LARLGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred HHHHHHHhhhHHhHHHHHHHhhcccccccc-----cccHHHHHHH------HHHhCChHHHHHHHHHHHHhcCChHHHHH
Confidence 3334444444555555555554431 222 4567778899 99999999999999999999998877555
Q ss_pred HHH
Q psy13014 152 RRA 154 (229)
Q Consensus 152 ~la 154 (229)
...
T Consensus 404 l~~ 406 (415)
T COG4941 404 LRQ 406 (415)
T ss_pred HHH
Confidence 443
No 488
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=36.45 E-value=1.5e+02 Score=20.84 Aligned_cols=35 Identities=9% Similarity=0.151 Sum_probs=22.0
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLY 157 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 157 (229)
++..-+.+.|...|.++++..|++..++..+-..+
T Consensus 86 ~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 86 WIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp HHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 33444567888888888888888877766655444
No 489
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=36.09 E-value=2.4e+02 Score=23.06 Aligned_cols=107 Identities=7% Similarity=0.026 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC-chhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSC-SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
..+..+++.++|..|.+.++.+.+.+...+.++..-... +.+.--.-..+|.+ |-.+.-.++.++..+..++.
T Consensus 111 E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~------y~d~~vV~e~lE~~~~~iEk 184 (412)
T COG5187 111 ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLI------YGDRKVVEESLEVADDIIEK 184 (412)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHh------hccHHHHHHHHHHHHHHHHh
Confidence 456778999999999999999999999888877543211 11122334556777 65655667778888888877
Q ss_pred CCCcHH---HHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 143 NPSYLK---VYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 143 ~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
..+... .-...|.-.....++.+|-..+..++..
T Consensus 185 GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 185 GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 655432 2334566677777888888888776644
No 490
>KOG4459|consensus
Probab=35.88 E-value=93 Score=26.78 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q psy13014 19 TIYFSCFILFILFSEIRTDCHQFERQVFYI 48 (229)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 48 (229)
..|.-|...... +++.++..+++.++...
T Consensus 33 ~ay~~gl~~y~~-~~w~~~v~~le~ALr~~ 61 (471)
T KOG4459|consen 33 LAYSHGLESYEE-ENWPEAVRFLERALRLF 61 (471)
T ss_pred HHHHHHHhhhhh-ccHHHHHHHHHHHHHHH
Confidence 344556666666 77888888777766443
No 491
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=35.56 E-value=1.6e+02 Score=24.49 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCc---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy13014 130 DQSILACSKAITLNPSY---LKVYQRRARLYQQSDKLDEALADYQKILELDPN 179 (229)
Q Consensus 130 ~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 179 (229)
++....++..+..=|+- +..|.-+|.+....|.++..+..|++|+.....
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
No 492
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=34.01 E-value=1.2e+02 Score=21.85 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=17.2
Q ss_pred hhccC-ChHHHHHHHHHHHhcCCCcHH
Q psy13014 123 YLSLE-KPDQSILACSKAITLNPSYLK 148 (229)
Q Consensus 123 ~~~~~-~~~~A~~~~~~al~~~p~~~~ 148 (229)
+...| +.++|..+|-+||...|.-..
T Consensus 100 L~~~g~~~~ega~hf~nAl~Vc~qP~~ 126 (148)
T TIGR00985 100 LMAQGTNVDEGAVHFYNALKVYPQPQQ 126 (148)
T ss_pred HHhCCCchHHHHHHHHHHHHhCCCHHH
Confidence 66666 677777777777777665444
No 493
>KOG4279|consensus
Probab=33.66 E-value=43 Score=30.87 Aligned_cols=108 Identities=13% Similarity=0.179 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc-hhhHHHHHhHhhhhhhhHHhh---ccCChHHHHHHHHHHHhcC
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCS-VSRAVFYANRSAALEKLASYL---SLEKPDQSILACSKAITLN 143 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~lg~~~~~~~~~~---~~~~~~~A~~~~~~al~~~ 143 (229)
++...++-..|....+|+.-++..+..-.+ |+.++ .+...+.+..+.+ +- +-|+-++|+...-.+++..
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFA------LNRRNr~GDRakAL~~~l~lve~e 273 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFA------LNRRNRPGDRAKALNTVLPLVEKE 273 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeeh------hcccCCCccHHHHHHHHHHHHHhc
Confidence 445556666677778888777776655444 53322 1112222333333 22 3477889998888888765
Q ss_pred -CCcHHHHHHHHHHHHh---------cccHHHHHHHHHHHHHhCCCcHH
Q psy13014 144 -PSYLKVYQRRARLYQQ---------SDKLDEALADYQKILELDPNNRD 182 (229)
Q Consensus 144 -p~~~~~~~~la~~~~~---------~~~~~~A~~~~~~al~~~p~~~~ 182 (229)
|..++.+..-|.+|.. .+..+.|+++|+++++..|.-..
T Consensus 274 g~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s 322 (1226)
T KOG4279|consen 274 GPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS 322 (1226)
T ss_pred CCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc
Confidence 4456777777888764 46788999999999999997543
No 494
>KOG4563|consensus
Probab=33.56 E-value=97 Score=25.91 Aligned_cols=57 Identities=12% Similarity=0.017 Sum_probs=43.7
Q ss_pred HHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHhcccHHHHHHHH
Q psy13014 108 VFYANRSAALEKLASYLSLEKPDQSILACSKAITLN--------PSYLKVYQRRARLYQQSDKLDEALADY 170 (229)
Q Consensus 108 ~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (229)
.-....|.- .+..+++++|...|..|..+. -....+++.+|.+++.+++.+.++-.+
T Consensus 42 e~lv~~G~~------~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 42 EELVQAGRR------ALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHhhhH------HHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334556666 888999999999999998763 234678899999999998887766543
No 495
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=33.44 E-value=1.4e+02 Score=20.14 Aligned_cols=34 Identities=15% Similarity=0.056 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSC 98 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 98 (229)
-..+..++..|..+...|+.+.|.-.|-+.+.+.
T Consensus 35 ~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 35 LRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp HHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3566778899999999999999999999988763
No 496
>KOG2582|consensus
Probab=32.60 E-value=2.2e+02 Score=24.00 Aligned_cols=103 Identities=13% Similarity=0.011 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHH-h---c
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAI-T---L 142 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al-~---~ 142 (229)
-......++....+.+.....+....+++..-..... -...++..+-.+ ....++|.-+..+++--+ + -
T Consensus 101 f~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~-qlT~~H~~l~~~------~L~ak~y~~~~p~ld~divei~~~ 173 (422)
T KOG2582|consen 101 FFPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNG-QLTSIHADLLQL------CLEAKDYASVLPYLDDDIVEICKA 173 (422)
T ss_pred HHHHHHHHHHHHHhcCCccccchHHHHHHHHhccCcc-chhhhHHHHHHH------HHHhhcccccCCccchhHHHHhcc
Confidence 3345667788888888888888888888775322211 124455666666 555666555543332211 1 1
Q ss_pred CCCc-HH----HHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 143 NPSY-LK----VYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 143 ~p~~-~~----~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
+|.. ++ .+++=|.++..+++++.|..+|+.++-.
T Consensus 174 n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 174 NPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT 212 (422)
T ss_pred CCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc
Confidence 3433 22 2344478888999999999999988765
No 497
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=31.60 E-value=94 Score=16.99 Aligned_cols=32 Identities=19% Similarity=0.040 Sum_probs=27.0
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhcccHHHH
Q psy13014 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEA 166 (229)
Q Consensus 135 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 166 (229)
.+..+|--+|++.....-+|.-+...|+...|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 46678888999999999999999999988655
No 498
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=31.56 E-value=1.2e+02 Score=18.06 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=36.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHh--HhhhhhhhHHhhccCChHHHHHH
Q psy13014 72 KDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYAN--RSAALEKLASYLSLEKPDQSILA 135 (229)
Q Consensus 72 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~--lg~~~~~~~~~~~~~~~~~A~~~ 135 (229)
+..|..++..|+|-+|=+.++..-...+.. .......... .|.. ..+.|+...|...
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~-~~~~lqglIq~A~a~~------h~~~gn~~gA~~l 61 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGP-ERDFLQGLIQLAVALY------HLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CC-HHHHHHHHHHHHHHHH------HHHCTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcc-hHHHHHHHHHHHHHHH------HHHhCCHHHHHHh
Confidence 346778889999999999999998766544 2222222233 3333 5677888877654
No 499
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=30.99 E-value=16 Score=32.21 Aligned_cols=98 Identities=23% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHH--H
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEAL--RSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKA--I 140 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~a--l 140 (229)
+........-+..+.+.|++..|...+...- .+.+.. ........|.+ ....|+++.|+..+... .
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q----~~~~~Ll~A~l------al~~~~~~~Al~~L~~~~~~ 90 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQ----QARYQLLRARL------ALAQGDPEQALSLLNAQDLW 90 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHH----HHHHHHHHHHH------HHhcCCHHHHHHHhccCCcc
Confidence 4555666777788888888888888887665 233332 25555666777 77888888888887641 1
Q ss_pred hcCCC-cHHHHHHHHHHHHhcccHHHHHHHHHH
Q psy13014 141 TLNPS-YLKVYQRRARLYQQSDKLDEALADYQK 172 (229)
Q Consensus 141 ~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (229)
.+.+. ....+..+|.++...|++-+|...+-.
T Consensus 91 ~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~ 123 (536)
T PF04348_consen 91 QLPPEQQARYHQLRAQAYEQQGDPLAAARERIA 123 (536)
T ss_dssp ---------------------------------
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11121 123455567777777777666655433
No 500
>KOG4056|consensus
Probab=30.79 E-value=1.5e+02 Score=20.98 Aligned_cols=31 Identities=3% Similarity=-0.051 Sum_probs=14.7
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCCcHHH
Q psy13014 153 RARLYQQSDKLDEALADYQKILELDPNNRDA 183 (229)
Q Consensus 153 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 183 (229)
+|..+...|+++++..++-.|+.+-|.-...
T Consensus 87 lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqL 117 (143)
T KOG4056|consen 87 LGEELLAQGNEEEGAEHLANAIVVCGQPAQL 117 (143)
T ss_pred hHHHHHHccCHHHHHHHHHHHHhhcCCHHHH
Confidence 3444444445555545554444444444333
Done!