RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13014
(229 letters)
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 127 bits (321), Expect = 1e-37
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 8/123 (6%)
Query: 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKL 120
+ + L+ EGN LF+ + +LA Y +AL +AV + NR+A
Sbjct: 21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP--QDQAVLHRNRAAC---- 74
Query: 121 ASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
+L LE D++ SKAI + +K RR++ ++ +LD+A+ D Q+ + L+P N
Sbjct: 75 --HLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132
Query: 181 RDA 183
+
Sbjct: 133 KVF 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 117 bits (296), Expect = 5e-34
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 11/120 (9%)
Query: 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL 124
A+ +K++GN F+ + +++ Y EA++ P A Y+NR+A Y
Sbjct: 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-----KDAKLYSNRAAC------YT 61
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
L + ++ C + I L P+++K Y R+A + +A+ YQK L+LD + ++A
Sbjct: 62 KLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAA 121
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 116 bits (294), Expect = 1e-33
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 11/124 (8%)
Query: 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKL 120
S++ A LK EGN ++ + ++ Y +A+ P + AV++ NR+AA
Sbjct: 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-----ANAVYFCNRAAA---- 55
Query: 121 ASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
Y L ++ C +AI ++P+Y K Y R +K EA+A Y+K LELDP+N
Sbjct: 56 --YSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN 113
Query: 181 RDAY 184
Sbjct: 114 ETYK 117
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 115 bits (290), Expect = 3e-33
Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 11/133 (8%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
A + EG F + W ++ Y E ++ P A Y+NR+AA
Sbjct: 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-----EDARGYSNRAAA------LAK 50
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
L ++I C+KAI +P++++ Y R+A + AL D +
Sbjct: 51 LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSS 110
Query: 186 ATKVSPDLKLKEK 198
A ++ +
Sbjct: 111 AREIDQLYYKASQ 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 115 bits (289), Expect = 5e-33
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
A K++GN F+ + ++ YNEA++ P A+ Y+NR+A L
Sbjct: 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-----ENAILYSNRAAC------LTKLM 61
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
+ +++ C I L+ ++K Y R+A + +A Y+ L++DP+N +A
Sbjct: 62 EFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 116 bits (292), Expect = 6e-33
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKL 120
+ + A LK + N F+ + ++ Y++A+ P S A++Y NRS A
Sbjct: 6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNP-----SNAIYYGNRSLA---- 56
Query: 121 ASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
YL E ++ ++AI L+ Y+K Y RRA K AL DY+ ++++ P++
Sbjct: 57 --YLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114
Query: 181 RDA 183
+DA
Sbjct: 115 KDA 117
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 114 bits (287), Expect = 1e-32
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 11/134 (8%)
Query: 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL 124
+A LK++GN LF ++ E+ A Y A+ P AV+Y NR+ YL
Sbjct: 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-----AVYYTNRALC------YL 54
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+++P+Q++ C +A+ L+ +K + + + + DEA+A+ Q+ L R +
Sbjct: 55 KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 114
Query: 185 VATKVSPDLKLKEK 198
S K+K
Sbjct: 115 GDDIPSALRIAKKK 128
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 114 bits (288), Expect = 2e-32
Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 12/144 (8%)
Query: 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL 124
+ LK EGNA ++S+++ Y +AL P + ++ +NR+AA Y
Sbjct: 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN-----PIYLSNRAAA------YS 56
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ + +++ A ++P Y K + R A Y+K +E + N
Sbjct: 57 ASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDA 116
Query: 185 VATKVSP-DLKLKEKNGATKLSPD 207
+ + K++E N + D
Sbjct: 117 MKRGLETTKRKIEEANRGAEPPAD 140
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 109 bits (275), Expect = 5e-31
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
+ LK++GN + ++L Y+EA++ P V Y+NRSAA Y
Sbjct: 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-----HNHVLYSNRSAA------YAK 50
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
++ K + L P + K Y R+A + ++ +EA Y++ L+ + NN
Sbjct: 51 KGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQL 108
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 103 bits (258), Expect = 5e-28
Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 20/155 (12%)
Query: 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVS-------------RAV 108
KL+ +L+ +GN LF + E++ Y +AL
Sbjct: 6 DKLKS-VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIP 64
Query: 109 FYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALA 168
YAN S YL++ ++ S+ + + K RRA+ + KLDEA
Sbjct: 65 LYANMSQC------YLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEE 118
Query: 169 DYQKILELDPNNRDAYVATKVSPDLKLKEKNGATK 203
D + +L P + EK ++
Sbjct: 119 DLKLLLRNHPAAASVVAREMKIVTERRAEKKADSR 153
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 105 bits (264), Expect = 9e-28
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
+A LK++GN LF ++ E+ A Y A+ P AV+Y NR+ YL
Sbjct: 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-----AVYYTNRALC------YLK 50
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
+++P+Q++ C +A+ L+ +K + + + + DEA+A+ Q+ L R +
Sbjct: 51 MQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110
Query: 186 ATKVSPDLKLKEK 198
S K+K
Sbjct: 111 DDIPSALRIAKKK 123
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 99.8 bits (249), Expect = 2e-26
Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 18/133 (13%)
Query: 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVS-----------RAVFY 110
+K++ A +K+EGN F+ N+ +E++ KY EAL +
Sbjct: 33 EKVQS-AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91
Query: 111 ANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADY 170
N + Y + ++I SK + ++ + +K + L+EA +
Sbjct: 92 LNLATC------YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENL 145
Query: 171 QKILELDPNNRDA 183
K L+PNN D
Sbjct: 146 YKAASLNPNNLDI 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 96.6 bits (241), Expect = 7e-26
Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 18/127 (14%)
Query: 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKL 120
S + AI+ KD GNA ++ + ++ Y++A+ P + FY N++A
Sbjct: 1 SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN-----ITFYNNKAAV---- 51
Query: 121 ASYLSLEKPDQSILACSKAITLNPS-------YLKVYQRRARLYQQSDKLDEALADYQKI 173
Y +K + + C KA+ + K R +Q+ + L A+ + +
Sbjct: 52 --YFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRS 109
Query: 174 LELDPNN 180
L +
Sbjct: 110 LSEFRDP 116
Score = 32.3 bits (74), Expect = 0.042
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 143 NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ + ++A Y K +ELDP+N Y
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFY 45
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 101 bits (253), Expect = 1e-25
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVS----------RAVFYA 111
+KLEQ + +K+ G F+ ++ ++L +Y + + S S R +
Sbjct: 142 EKLEQ-STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL 200
Query: 112 NRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQ 171
N + +L L+ +I +C+KA+ L+ + K RR + + + A AD+Q
Sbjct: 201 NLAMC------HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ 254
Query: 172 KILELDPNNRDA 183
K+L+L PNN+ A
Sbjct: 255 KVLQLYPNNKAA 266
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 100 bits (251), Expect = 3e-25
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Query: 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLAS 122
K + L + L R +++++ +KY +++ P S + K
Sbjct: 229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SVAEYTVRSKERICHCFSKD-- 285
Query: 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182
EKP ++I CS+ + + P + + RA Y + DEA+ DY+ E + N++
Sbjct: 286 ----EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341
Query: 183 AY 184
Sbjct: 342 IR 343
Score = 98.5 bits (246), Expect = 2e-24
Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKP 129
+ G L Q +++L++++ A+ P + + Y R+ +L++ K
Sbjct: 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDN-----YIAYYRRATV------FLAMGKS 53
Query: 130 DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186
++ +K I L + +R L + KLDEA D++K+L+ +P+ ++ A
Sbjct: 54 KAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEA 110
Score = 86.2 bits (214), Expect = 5e-20
Identities = 20/135 (14%), Positives = 49/135 (36%), Gaps = 11/135 (8%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
L+ + F ++ ++ ++ L C A R+ K
Sbjct: 118 DEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD-----AELRELRAECFIKE----- 167
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
+P ++I A L + + + + LY Q + +L++ ++ L+LD +++ +
Sbjct: 168 -GEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA 226
Query: 186 ATKVSPDLKLKEKNG 200
K L ++
Sbjct: 227 HYKQVKKLNKLIESA 241
Score = 65.8 bits (161), Expect = 8e-13
Identities = 9/123 (7%), Positives = 40/123 (32%), Gaps = 23/123 (18%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
+ + ++++ A + + + S +L + S+
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDNTEA-----FYKISTLYYQL------GDHELSLS 209
Query: 135 ACSKAITLNPSYLKVYQRRARL------------YQQSDKLDEALADYQKILELDPNNRD 182
+ + L+ + + + ++ + + +A + Y+ +++ +P+ +
Sbjct: 210 EVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE 269
Query: 183 AYV 185
V
Sbjct: 270 YTV 272
Score = 61.5 bits (150), Expect = 2e-11
Identities = 17/74 (22%), Positives = 29/74 (39%)
Query: 111 ANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADY 170
A+ LE L+ + ++ A+ +P Y RRA ++ K AL D
Sbjct: 1 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL 60
Query: 171 QKILELDPNNRDAY 184
K++ L + A
Sbjct: 61 TKVIALKMDFTAAR 74
Score = 47.3 bits (113), Expect = 1e-06
Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
+ + + E++ +E L+ P + +R+ A YL E D++I
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQMEPDN-----VNALKDRAEA------YLIEEMYDEAIQ 327
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQ 159
A N + ++ + + +
Sbjct: 328 DYEAAQEHNENDQQIREGLEKAQRL 352
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 94.3 bits (235), Expect = 5e-25
Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 18/122 (14%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
+ A+ K+ GN ++ + +L Y++A P + + N++A Y
Sbjct: 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN-----MTYITNQAAV------YFE 50
Query: 126 LEKPDQSILACSKAITLNP-------SYLKVYQRRARLYQQSDKLDEALADYQKILELDP 178
++ C KAI + K Y R Y + +K +A+ Y K L
Sbjct: 51 KGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
Query: 179 NN 180
Sbjct: 111 TP 112
Score = 28.4 bits (64), Expect = 0.87
Identities = 10/23 (43%), Positives = 10/23 (43%)
Query: 162 KLDEALADYQKILELDPNNRDAY 184
D AL Y K ELDP N
Sbjct: 19 DFDTALKHYDKAKELDPTNMTYI 41
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 100 bits (250), Expect = 8e-25
Identities = 25/117 (21%), Positives = 53/117 (45%), Gaps = 11/117 (9%)
Query: 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKP 129
+ G L Q +++L++++ A+ P + + Y R+ +L++ K
Sbjct: 28 KHLELGKKLLAAGQLADALSQFHAAVDGDPDN-----YIAYYRRATV------FLAMGKS 76
Query: 130 DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186
++ +K I L + +R L + KLDEA D++K+L+ +P+ + A
Sbjct: 77 KAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133
Score = 96.7 bits (241), Expect = 2e-23
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Query: 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLAS 122
K + L + L R +++++ +KY +++ P S + K
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SIAEYTVRSKERICHCFSKD-- 308
Query: 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182
EKP ++I CS+ + + P + + RA Y + DEA+ DY+ E + N++
Sbjct: 309 ----EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQ 364
Query: 183 AY 184
Sbjct: 365 IR 366
Score = 85.9 bits (213), Expect = 9e-20
Identities = 21/135 (15%), Positives = 50/135 (37%), Gaps = 11/135 (8%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
L+ + F ++ ++A ++ L C A R+ K
Sbjct: 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD-----AELRELRAECFIKE----- 190
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
+P ++I A L + + + + LY Q + +L++ ++ L+LD +++ +
Sbjct: 191 -GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA 249
Query: 186 ATKVSPDLKLKEKNG 200
K L ++
Sbjct: 250 HYKQVKKLNKLIESA 264
Score = 74.3 bits (183), Expect = 9e-16
Identities = 16/116 (13%), Positives = 42/116 (36%), Gaps = 5/116 (4%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANR-SAALEKLASYLSLEKPDQSI 133
++L SL++ E L+ + + +E + + +
Sbjct: 218 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 277
Query: 134 LACSKAITLNPSY----LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
+ PS ++ +R + + +K EA+ ++L+++P+N +A
Sbjct: 278 SKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333
Score = 58.9 bits (143), Expect = 2e-10
Identities = 12/112 (10%), Positives = 37/112 (33%), Gaps = 11/112 (9%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
+ + + E++ +E L+ P + +R+ A E D++I
Sbjct: 302 CHCFSKDEKPVEAIRVCSEVLQMEPDN-----VNALKDRAEAYLIE------EMYDEAIQ 350
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186
A N + ++ + + + + + ++ + ++ A
Sbjct: 351 DYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKA 402
Score = 35.8 bits (83), Expect = 0.008
Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 12/117 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASY---LSLEK--- 128
A + E++ Y A + + A R + Y L +++
Sbjct: 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395
Query: 129 PDQSILACSK-AITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ I A K A+ +P + + + + ++ + A DP R +
Sbjct: 396 KQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLS-----DPEMRKKF 447
Score = 28.1 bits (63), Expect = 2.6
Identities = 7/62 (11%), Positives = 17/62 (27%), Gaps = 23/62 (37%)
Query: 146 YLKVYQRRARLYQQSDKLDEALAD-----------------------YQKILELDPNNRD 182
+ + + +++AD + ++ DP+N
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI 61
Query: 183 AY 184
AY
Sbjct: 62 AY 63
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 96.1 bits (240), Expect = 2e-24
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 11/117 (9%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
A + EG F + W ++ Y E ++ P A Y+NR+AAL KL S+
Sbjct: 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-----ARGYSNRAAALAKLMSF---- 189
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
++I C+KAI +P++++ Y R+A + AL D +
Sbjct: 190 --PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGS 244
Score = 79.9 bits (198), Expect = 2e-18
Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 12/117 (10%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
A K EGN ++ Q+ E++ YN+A + NR+AA + Y
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKD------ITYLNNRAAAEYEKGEY---- 54
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ +I + A+ Y+ ++ + + L D +K +E + +
Sbjct: 55 --ETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH 109
Score = 74.1 bits (183), Expect = 3e-16
Identities = 15/125 (12%), Positives = 37/125 (29%), Gaps = 20/125 (16%)
Query: 68 AISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEK 119
A+ E + R+ L + + +S + + L K
Sbjct: 64 AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT------EHRTADILTK 117
Query: 120 LASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179
L + ++ + +NP + + + Y A+ Y ++++ P
Sbjct: 118 LRNA------EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE 171
Query: 180 NRDAY 184
+ Y
Sbjct: 172 DARGY 176
Score = 36.8 bits (86), Expect = 0.003
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 144 PSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
S + + ++ + DEA+ Y K EL +
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYL 41
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 90.8 bits (226), Expect = 9e-24
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 13/119 (10%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
K++GN+LF+ + E++ Y++ + + P V Y+N++ AL KL Y
Sbjct: 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-----QNPVGYSNKAMALIKLGEY-- 54
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQK-ILELDPNNRDA 183
Q+I C + + + V R Y+ + A+ Q ++E+D
Sbjct: 55 ----TQAIQMCQQGLRYTSTAEHVAIRSKLQYRL-ELAQGAVGSVQIPVVEVDELPEGY 108
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 93.3 bits (232), Expect = 4e-22
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL 124
++ A++LKD+GN FR ++ +++ YN AL VFY+N SA Y+
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED------PVFYSNLSAC------YV 50
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKI-LELDPNNRDA 183
S+ + + +KA+ L P Y KV RRA + K +A+ D + L D N+
Sbjct: 51 SVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASI 110
Query: 184 Y 184
Sbjct: 111 E 111
Score = 85.6 bits (212), Expect = 2e-19
Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 12/121 (9%)
Query: 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL 124
E+ AISL+ G F N + +A+ PR Y +
Sbjct: 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR------VNSYIYMALI------MA 281
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ KA+ L+ + VY R ++ D+A D+ K ELDP N Y
Sbjct: 282 DRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPY 341
Query: 185 V 185
+
Sbjct: 342 I 342
Score = 83.6 bits (207), Expect = 6e-19
Identities = 19/113 (16%), Positives = 44/113 (38%), Gaps = 8/113 (7%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEK---LASYLSLEKPDQ 131
L N + ++L +Y+ A+ + Y + + K L ++E +
Sbjct: 379 AEILTDKNDFDKALKQYDLAIELENKL-----DGIYVGIAPLVGKATLLTRNPTVENFIE 433
Query: 132 SILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ KA L+P + A++ Q + +DEA+ +++ +L +
Sbjct: 434 ATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL 486
Score = 77.9 bits (192), Expect = 8e-17
Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 19/126 (15%)
Query: 68 AISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEK 119
A+ L G F L + ++ +++A P + Y + +
Sbjct: 296 ALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN-----IFPYIQLACLAYR 350
Query: 120 LASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179
+ D S+A P +V A + + D+AL Y +EL+
Sbjct: 351 ENKF------DDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404
Query: 180 NRDAYV 185
YV
Sbjct: 405 LDGIYV 410
Score = 74.4 bits (183), Expect = 1e-15
Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 18/124 (14%)
Query: 68 AISLKDE-------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKL 120
AI L + N +E +++AL+ + + Y +R
Sbjct: 263 AIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN-----SSVYYHRGQMNFI- 316
Query: 121 ASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
L+ DQ+ KA L+P + Y + A L + +K D+ + + P
Sbjct: 317 -----LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA 371
Query: 181 RDAY 184
+
Sbjct: 372 PEVP 375
Score = 59.8 bits (145), Expect = 1e-10
Identities = 15/125 (12%), Positives = 45/125 (36%), Gaps = 2/125 (1%)
Query: 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLA 121
+K +Q + + F + + + A Y+E+ + + ++ + + +
Sbjct: 151 RKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADE 210
Query: 122 SYL-SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
S+ + ++ + ++ L + + A D +K +EL P
Sbjct: 211 SFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV 270
Query: 181 RDAYV 185
++Y+
Sbjct: 271 -NSYI 274
Score = 43.2 bits (102), Expect = 3e-05
Identities = 11/106 (10%), Positives = 32/106 (30%), Gaps = 13/106 (12%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
+ + + E+ +A + PRS + + E
Sbjct: 415 LVGKATLLTRNPTVENFIEATNLLEKASKLDPRS-----EQAKIGLAQMKLQQ------E 463
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKI 173
D++I ++ L + + Q + ++ K+ + + +
Sbjct: 464 DIDEAITLFEESADLARTMEEKLQAIT--FAEAAKVQQRIRSDPVL 507
Score = 35.1 bits (81), Expect = 0.016
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 143 NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
Y + + + ++ K D+A+ Y LEL + Y
Sbjct: 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDP-VFY 42
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 92.1 bits (229), Expect = 8e-22
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 11/119 (9%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
+ A LK + N F+ + ++ Y++A+ P S A++Y NRS A YL
Sbjct: 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNP-----SNAIYYGNRSLA------YLR 52
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
E ++ ++AI L+ Y+K Y RRA K AL DY+ ++++ P+++DA
Sbjct: 53 TECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK 111
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 88.2 bits (219), Expect = 2e-20
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 12/133 (9%)
Query: 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL 124
+ A+ LK+ GN F ++E++ Y A+ P VFY+N SA
Sbjct: 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE-----PVFYSNISACYIST---- 72
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
++ I +KA+ + P + K RRA + +A+ D + L+ + A
Sbjct: 73 --GDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL-SLNGDFDGAS 129
Query: 185 VATKVSPDLKLKE 197
+ + +L +
Sbjct: 130 IEPMLERNLNKQA 142
Score = 81.7 bits (202), Expect = 3e-18
Identities = 28/120 (23%), Positives = 41/120 (34%), Gaps = 12/120 (10%)
Query: 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL 124
E A++L G F N ++ E++ P Y + L
Sbjct: 240 ENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT------PNSYIFLALTLADK---- 289
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
E + KA+ LNP Y Y R ++Y A D+QK L+P N Y
Sbjct: 290 --ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY 347
Score = 78.2 bits (193), Expect = 6e-17
Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 15/120 (12%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLA----------SYL 124
L + ++ +Y+ A R + + K + L
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQ-----EKIHVGIGPLIGKATILARQSSQDPTQL 439
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
EK + +I +KA L+P + A+L Q +K+DEA+ ++ L +
Sbjct: 440 DEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499
Score = 77.1 bits (190), Expect = 1e-16
Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 11/122 (9%)
Query: 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLAS 122
L T S L E + +A+ P Y +R
Sbjct: 271 NLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY-----PPTYYHRGQM------ 319
Query: 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182
Y L+ + KA +LNP + Y + A L + K E+ A + + P +
Sbjct: 320 YFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPE 379
Query: 183 AY 184
Sbjct: 380 VP 381
Score = 75.9 bits (187), Expect = 3e-16
Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 19/128 (14%)
Query: 66 QTAISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAAL 117
Q A+ L E G F L + + + +A P + Y + L
Sbjct: 300 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN-----VYPYIQLACLL 354
Query: 118 EKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177
K + +S ++ P+ +V A + D A+ Y L+
Sbjct: 355 YKQGKF------TESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408
Query: 178 PNNRDAYV 185
+V
Sbjct: 409 EVQEKIHV 416
Score = 63.6 bits (155), Expect = 5e-12
Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 7/99 (7%)
Query: 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145
+ P S + AV NR + +++I AI L+P+
Sbjct: 5 NGEPDIAQLKGLSP-SQRQAYAVQLKNRGNHFFTA------KNFNEAIKYYQYAIELDPN 57
Query: 146 YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
Y + Y + L++ + K LE+ P++ A
Sbjct: 58 EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKAL 96
Score = 57.8 bits (140), Expect = 5e-10
Identities = 20/134 (14%), Positives = 40/134 (29%), Gaps = 14/134 (10%)
Query: 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL 124
E + L + ++ L + S + YA S AL++L S
Sbjct: 148 ENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSAT 207
Query: 125 -------------SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQ 171
S + + A + L + + + L +A Q
Sbjct: 208 DEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267
Query: 172 KILELDPNNRDAYV 185
+ + L P ++Y+
Sbjct: 268 ESINLHPTP-NSYI 280
Score = 51.3 bits (123), Expect = 7e-08
Identities = 15/110 (13%), Positives = 34/110 (30%), Gaps = 13/110 (11%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
+++ ++ +A PRS + ++ EK D++I
Sbjct: 435 DPTQLDEEKFNAAIKLLTKACELDPRS-----EQAKIGLAQLKLQM------EKIDEAIE 483
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ L + + Q A + ++ K+ + L I Y
Sbjct: 484 LFEDSAILARTMDEKLQ--ATTFAEAAKIQKRLRADPIISAKMELTLARY 531
Score = 50.5 bits (121), Expect = 1e-07
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 128 KPDQSILACSKAITLNPS----YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
++ L+PS Y + R + + +EA+ YQ +ELDPN
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61
Query: 184 Y 184
Y
Sbjct: 62 Y 62
Score = 29.7 bits (67), Expect = 0.92
Identities = 7/102 (6%), Positives = 22/102 (21%), Gaps = 28/102 (27%)
Query: 66 QTAISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAAL 117
A L ++ + E++ + ++ + +
Sbjct: 452 TKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR-----TMDEKLQATT--F 504
Query: 118 EKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ 159
+ A K + +P + Y+
Sbjct: 505 AEAAKIQ-------------KRLRADPIISAKMELTLARYRA 533
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 86.6 bits (214), Expect = 2e-20
Identities = 24/150 (16%), Positives = 56/150 (37%), Gaps = 18/150 (12%)
Query: 46 FYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVS 105
+ + ++ A K +GN+LF+ + E++ +Y A+
Sbjct: 157 GFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQ 216
Query: 106 ------------RAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRR 153
+ + N +A + L++ D++I C+ +T K RR
Sbjct: 217 LYGKYQDMALAVKNPCHLNIAAC------LIKLKRYDEAIGHCNIVLTEEEKNPKALFRR 270
Query: 154 ARLYQQSDKLDEALADYQKILELDPNNRDA 183
+ + ++D A D++K + P+++
Sbjct: 271 GKAKAELGQMDSARDDFRKAQKYAPDDKAI 300
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 83.4 bits (207), Expect = 6e-19
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
NAL +E+ YN ALR CP A N + + ++++
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTH-----ADSLNNLANIKREQ------GNIEEAVR 326
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
KA+ + P + + A + QQ KL EAL Y++ + + P DAY
Sbjct: 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376
Score = 81.8 bits (203), Expect = 2e-18
Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
GN L + ++A Y AL P AV + N + + D +I
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNH-----AVVHGNLACVYYEQ------GLIDLAID 258
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+AI L P + Y A ++ + EA Y L L P + D+
Sbjct: 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL 308
Score = 79.5 bits (197), Expect = 1e-17
Identities = 30/110 (27%), Positives = 42/110 (38%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
GN Q E++ Y ALR P Y N +AAL + ++
Sbjct: 74 GNVYKERGQLQEAIEHYRHALRLKPDF-----IDGYINLAAALVAA------GDMEGAVQ 122
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
A A+ NP V L + +L+EA A Y K +E PN A+
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW 172
Score = 79.5 bits (197), Expect = 1e-17
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
GN L L + E+ A Y +A+ + P AV ++N + +I
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNF-----AVAWSNLGCVFNAQ------GEIWLAIH 190
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
KA+TL+P++L Y + +++ D A+A Y + L L PN+ +
Sbjct: 191 HFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240
Score = 75.7 bits (187), Expect = 3e-16
Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
+ ++ + + + R P + S+ + + D+S
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDN-----TGVLLLLSSIHFQC------RRLDRSAH 54
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ AI NP + Y +Y++ +L EA+ Y+ L L P+ D Y
Sbjct: 55 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGY 104
Score = 56.8 bits (138), Expect = 8e-10
Identities = 10/68 (14%), Positives = 23/68 (33%)
Query: 117 LEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
+E + + C + P V + ++ Q +LD + ++
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 177 DPNNRDAY 184
+P +AY
Sbjct: 63 NPLLAEAY 70
Score = 49.8 bits (120), Expect = 2e-07
Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 19/102 (18%)
Query: 66 QTAISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAAL 117
TA+ L N E++ Y +AL P + ++N ++ L
Sbjct: 295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA-----HSNLASVL 349
Query: 118 EKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ 159
++ K ++++ +AI ++P++ Y ++
Sbjct: 350 QQQ------GKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
Score = 42.1 bits (100), Expect = 8e-05
Identities = 5/35 (14%), Positives = 11/35 (31%)
Query: 150 YQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
A Q+ + A ++ +P+N
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVL 36
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 78.3 bits (194), Expect = 7e-18
Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 19/125 (15%)
Query: 68 AISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEK 119
A+ L GN + E+ + +ALR+ + + L K
Sbjct: 83 ALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-----GDLFYMLGTVLVK 137
Query: 120 LASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179
L E+P ++ +A+ LN + + + LDEAL+ + + E DP
Sbjct: 138 L------EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191
Query: 180 NRDAY 184
+ DA+
Sbjct: 192 HADAF 196
Score = 73.7 bits (182), Expect = 4e-16
Identities = 17/125 (13%), Positives = 36/125 (28%), Gaps = 19/125 (15%)
Query: 68 AISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEK 119
A+ E G L +L Q +L A+ L
Sbjct: 117 ALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND-----TEARFQFGMCLAN 171
Query: 120 LASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179
D+++ + +P + + Y + ++AL K +++ P+
Sbjct: 172 E------GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225
Query: 180 NRDAY 184
+ A
Sbjct: 226 HMLAL 230
Score = 72.2 bits (178), Expect = 1e-15
Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
+ ++ + +A+ A+ Y N + L + + ++++
Sbjct: 30 MGRGSEFGDYEKAAEAFTKAIEENKED-----AIPYINFANLLSSV------NELERALA 78
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
KA+ L+ S Y +Y + EA ++K L N D +
Sbjct: 79 FYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLF 128
Score = 69.9 bits (172), Expect = 1e-14
Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145
S ++ + PR + + + +++ A +KAI N
Sbjct: 3 SSHHHHHHSSGLVPRG-----SHMASMTGGQQ--MGRGSEFGDYEKAAEAFTKAIEENKE 55
Query: 146 YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
Y A L ++L+ ALA Y K LELD + AY
Sbjct: 56 DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAY 94
Score = 47.9 bits (115), Expect = 6e-07
Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 19/102 (18%)
Query: 66 QTAISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAAL 117
Q A+ L + G L E+L+++ P A + N
Sbjct: 149 QRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH-----ADAFYNAGVTY 203
Query: 118 EKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ 159
E ++++ KAI + P ++ + L
Sbjct: 204 AYK------ENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239
Score = 44.8 bits (107), Expect = 7e-06
Identities = 7/59 (11%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 130 DQSILACSKAITLNPSYLKVY----QRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
S + L P + ++ + ++A + K +E + + Y
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60
Score = 27.9 bits (63), Expect = 2.2
Identities = 2/22 (9%), Positives = 5/22 (22%)
Query: 163 LDEALADYQKILELDPNNRDAY 184
+ + + L P
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMA 22
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 76.7 bits (189), Expect = 2e-17
Identities = 19/128 (14%), Positives = 49/128 (38%), Gaps = 11/128 (8%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLAS--- 122
Q+ + + +A Q ++++ + + + + ++ N E +
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR---TEMYYWTNVDKNSEISSKLAT 58
Query: 123 -----YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177
Y D++ L + + P+ + + A + + +AL Y+KIL+L+
Sbjct: 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE 118
Query: 178 PNNRDAYV 185
+N A +
Sbjct: 119 ADNLAANI 126
Score = 65.2 bits (159), Expect = 3e-13
Identities = 13/106 (12%), Positives = 32/106 (30%), Gaps = 10/106 (9%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
Q ++L Y + L+ + + YL+ E+ + +
Sbjct: 95 AEMQVCRGQEKDALRMYEKILQLEADNLAA-----NIFLGNYY-----YLTAEQEKKKLE 144
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
K ++ R + + ++A QK++ P+
Sbjct: 145 TDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190
Score = 64.8 bits (158), Expect = 4e-13
Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 14/133 (10%)
Query: 54 VLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANR 113
+ ++ + E ++ + A + + ++ Y E L+ P N
Sbjct: 40 MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP------------NN 87
Query: 114 SAALEKLA-SYLSLEKPDQSILACSKAITLNPSYLKVYQRRAR-LYQQSDKLDEALADYQ 171
LE A + + ++ K + L L Y +++ + L
Sbjct: 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDY 147
Query: 172 KILELDPNNRDAY 184
K L + A
Sbjct: 148 KKLSSPTKMQYAR 160
Score = 38.2 bits (89), Expect = 0.001
Identities = 6/49 (12%), Positives = 24/49 (48%)
Query: 150 YQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEK 198
++ ++ + +A++ +++ + L+ + + Y T V + ++ K
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSK 55
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 79.3 bits (195), Expect = 2e-17
Identities = 29/139 (20%), Positives = 64/139 (46%), Gaps = 4/139 (2%)
Query: 49 QFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVS--- 105
F + +++ + A +K++G F+ ++ +++ +Y + + +S
Sbjct: 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKE 308
Query: 106 RAVFYANRSAALEKLA-SYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD 164
+ AA LA YL L + +++ C KA+ L+ + K RR ++ +
Sbjct: 309 SKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFE 368
Query: 165 EALADYQKILELDPNNRDA 183
A D++K+LE++P N+ A
Sbjct: 369 SAKGDFEKVLEVNPQNKAA 387
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 75.2 bits (186), Expect = 4e-17
Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G + + ++S+++ + + + A K D+
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFD-----VDVALHLGIAYVKT------GAVDRGTE 63
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+++ P +KV Y Q K D A+ K+ E +P N +
Sbjct: 64 LLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVR 113
Score = 74.0 bits (183), Expect = 1e-16
Identities = 18/127 (14%), Positives = 32/127 (25%), Gaps = 19/127 (14%)
Query: 66 QTAISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAAL 117
+ G A + +L P +
Sbjct: 32 EQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN-----VKVATVLGLTY 86
Query: 118 EKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177
++ +K D ++ K NP V R + DEA+ ++ L L
Sbjct: 87 VQV------QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140
Query: 178 PNNRDAY 184
PN +
Sbjct: 141 PNEGKVH 147
Score = 70.9 bits (175), Expect = 2e-15
Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 19/125 (15%)
Query: 68 AISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEK 119
+++ + G ++ ++ ++ + + P + AL+
Sbjct: 68 SLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-----FNVRFRLGVALDN 122
Query: 120 LASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179
L + D++I + A+ L P+ KV++ A Y+Q + +EAL ++K ELD
Sbjct: 123 L------GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176
Query: 180 NRDAY 184
Sbjct: 177 ASVEL 181
Score = 42.1 bits (100), Expect = 4e-05
Identities = 4/45 (8%), Positives = 19/45 (42%)
Query: 140 ITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ + Y+ + + ++ + +A+ +++ + D + D
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVA 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 76.2 bits (188), Expect = 7e-17
Identities = 25/110 (22%), Positives = 38/110 (34%), Gaps = 7/110 (6%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
L Q LA+ + L S + RA R Y SL +
Sbjct: 12 AVPLQPTLQQEVILARMEQILASRALTDD-ERAQLLYERGVL------YDSLGLRALARN 64
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
S+A+ + P +V+ Q+ D A + +LELDP A+
Sbjct: 65 DFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH 114
Score = 72.7 bits (179), Expect = 1e-15
Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G L + + +++AL P + L + D +
Sbjct: 50 GVLYDSLGLRALARNDFSQALAIRPDM-----PEVFNYLGIYLTQA------GNFDAAYE 98
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
A + L+P+Y + R + A D + DPN+
Sbjct: 99 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRS 148
Score = 59.2 bits (144), Expect = 8e-11
Identities = 12/140 (8%), Positives = 29/140 (20%), Gaps = 35/140 (25%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAAL------EKLASYLS--- 125
G AL+ + + + P A +
Sbjct: 118 GIALYYGGRDKLAQDDLLAFYQDDPND-----PFRSLWLYLAEQKLDEKQAKEVLKQHFE 172
Query: 126 ---------------------LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD 164
++ + +L + + Y LD
Sbjct: 173 KSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD 232
Query: 165 EALADYQKILELDPNNRDAY 184
A A ++ + + +N +
Sbjct: 233 SATALFKLAVANNVHNFVEH 252
Score = 56.9 bits (138), Expect = 5e-10
Identities = 13/111 (11%), Positives = 30/111 (27%), Gaps = 12/111 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G L + + + ++ L P + NR AL + +
Sbjct: 84 GIYLTQAGNFDAAYEAFDSVLELDPTY-----NYAHLNRGIALYYG------GRDKLAQD 132
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
+P+ Q+ D+ +A ++ E + +
Sbjct: 133 DLLAFYQDDPNDPFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQWGWN 182
Score = 48.1 bits (115), Expect = 6e-07
Identities = 7/96 (7%), Positives = 17/96 (17%), Gaps = 11/96 (11%)
Query: 77 ALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILAC 136
+ A + L D +
Sbjct: 190 NISEQTLMERLKADATDNTSLAEHLSET-----NFYLGKYYLSL------GDLDSATALF 238
Query: 137 SKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQK 172
A+ N ++ + + LA+ +
Sbjct: 239 KLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
Score = 26.9 bits (60), Expect = 5.1
Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 148 KVYQRRARLYQQSDKLDEALADYQKILE----LDPNNRDAY 184
+ + A Q + + + LA ++IL D
Sbjct: 6 RKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLL 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 76.2 bits (188), Expect = 8e-17
Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G L + Q S ++ +Y A+ +R Y + +I
Sbjct: 81 GKILMKKGQDSLAIQQYQAAVDRDT-----TRLDMYGQIGSYFYNK------GNFPLAIQ 129
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
K I + KV+ + Y + + +A + + K+LEL PN Y
Sbjct: 130 YMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGY 179
Score = 75.4 bits (186), Expect = 2e-16
Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 8/110 (7%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
+ LF+ N ++E++ +N+ S Y R+ +LA Y + + I
Sbjct: 10 ADFLFKNNNYAEAIEVFNKLEAKKYNS-----PYIYNRRAVCYYELAKY---DLAQKDIE 61
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ + ++ ++ + + A+ YQ ++ D D Y
Sbjct: 62 TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY 111
Score = 67.7 bits (166), Expect = 8e-14
Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 16/118 (13%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G A + ++ ++ + + + L P + Y R+ A K +
Sbjct: 149 GQAYYYNKEYVKADSSFVKVLELKPNI-----YIGYLWRARANAAQDPD---TKQGLAKP 200
Query: 135 ACSKAITL--------NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
K I + ++ + A Y + +A A ++ IL LDP N+ A
Sbjct: 201 YYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAI 258
Score = 41.5 bits (98), Expect = 8e-05
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+N V R A +++ EA+ + K+ N+ Y
Sbjct: 1 MND---DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIY 40
Score = 37.3 bits (87), Expect = 0.002
Identities = 8/91 (8%), Positives = 22/91 (24%), Gaps = 12/91 (13%)
Query: 75 GNALFRLNQWS---ESLAKYNEALRSCPRSCSVSRAVF---YANRSAALEKLASYLSLEK 128
A + + + Y + + C + + + Y
Sbjct: 183 ARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY------YTINRD 236
Query: 129 PDQSILACSKAITLNPSYLKVYQRRARLYQQ 159
++ A + L+P+ K +
Sbjct: 237 KVKADAAWKNILALDPTNKKAIDGLKMKLEH 267
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 76.2 bits (188), Expect = 1e-16
Identities = 16/111 (14%), Positives = 37/111 (33%), Gaps = 4/111 (3%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLAS-YLSLEKPDQSI 133
G F+ +W + + +AL + + L L L+K +++
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE---PLLNNLGHVCRKLKKYAEAL 256
Query: 134 LACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+A+ L P Y ++ + A+ + L L ++ +
Sbjct: 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV 307
Score = 58.1 bits (141), Expect = 3e-10
Identities = 16/124 (12%), Positives = 31/124 (25%), Gaps = 12/124 (9%)
Query: 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLA 121
L++ + + + + + P A L +L
Sbjct: 16 DGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-----FHASCLPVHIGTLVEL- 69
Query: 122 SYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQ-QSDKLDEALADYQKILELDPNN 180
K ++ K + L PS + Y K + A K L+
Sbjct: 70 -----NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY 124
Query: 181 RDAY 184
A+
Sbjct: 125 GPAW 128
Score = 57.3 bits (139), Expect = 5e-10
Identities = 12/109 (11%), Positives = 31/109 (28%), Gaps = 11/109 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G++ ++ +++A Y A + + +
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLMKGC-----HLPMLYIGLEYGLT------NNSKLAER 180
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
S+A+++ P V + Q+ + A + LE +
Sbjct: 181 FFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE 229
Score = 57.3 bits (139), Expect = 5e-10
Identities = 13/96 (13%), Positives = 30/96 (31%), Gaps = 11/96 (11%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G+ +L +++E+L + +AL P++ S Y+ + + ++
Sbjct: 243 GHVCRKLKKYAEALDYHRQALVLIPQNAST-----YSAIGYIHSLM------GNFENAVD 291
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADY 170
A+ L + EA
Sbjct: 292 YFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327
Score = 53.8 bits (130), Expect = 8e-09
Identities = 16/139 (11%), Positives = 34/139 (24%), Gaps = 34/139 (24%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLA------------- 121
L LN+ +E ++ + P + V + +
Sbjct: 63 IGTLVELNKANELFYLSHKLVDLYPSN-----PVSWFAVGCYYLMVGHKNEHARRYLSKA 117
Query: 122 ----------------SYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDE 165
S+ + DQ++ A A L Y ++
Sbjct: 118 TTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177
Query: 166 ALADYQKILELDPNNRDAY 184
A + + L + P +
Sbjct: 178 AERFFSQALSIAPEDPFVM 196
Score = 47.7 bits (114), Expect = 1e-06
Identities = 12/102 (11%), Positives = 30/102 (29%), Gaps = 11/102 (10%)
Query: 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP 144
S E++ + V + + + S + +P
Sbjct: 5 KPSETVIPESVDGLQENLDV-----VVSLAERHYYNCDF------KMCYKLTSVVMEKDP 53
Query: 145 SYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186
+ + +K +E K+++L P+N ++ A
Sbjct: 54 FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFA 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 72.4 bits (179), Expect = 2e-16
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
GNA ++ + E++ Y +AL PRS A + N A K D++I
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRS-----AEAWYNLGNAYYKQ------GDYDEAIE 56
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
KA+ L+P + + Y + DEA+ YQK LELDP + +A+
Sbjct: 57 YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW 106
Score = 69.0 bits (170), Expect = 3e-15
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 19/121 (15%)
Query: 68 AISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEK 119
A+ L GNA ++ + E++ Y +AL PRS A + N A K
Sbjct: 27 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-----AEAWYNLGNAYYK 81
Query: 120 LASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179
D++I KA+ L+P + + Y + DEA+ YQK LELDP
Sbjct: 82 Q------GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Query: 180 N 180
+
Sbjct: 136 S 136
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 75.5 bits (186), Expect = 3e-16
Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 23/160 (14%)
Query: 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR---SCPRSCSVS--------RAVF 109
K+ + LK+ GN F+ W ++ KY + LR + +
Sbjct: 216 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSC 275
Query: 110 YANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALAD 169
N A L + ++ +C +A+ ++PS K RRA+ +Q + D+ALAD
Sbjct: 276 VLNIGAC------KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALAD 329
Query: 170 YQKILELDPNNRD-----AYVATKVSPDLKLKEKNGATKL 204
+K E+ P ++ V K+ K KEK K+
Sbjct: 330 LKKAQEIAPEDKAIQAELLKVKQKIK-AQKDKEKAAYAKM 368
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 70.1 bits (173), Expect = 7e-16
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
GNA ++ + E++ Y +AL P + A + N A K D++I
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNN-----AEAWYNLGNAYYKQ------GDYDEAIE 64
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
KA+ L+P+ + + Y + DEA+ YQK LELDPNN +A
Sbjct: 65 YYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK 114
Score = 40.1 bits (95), Expect = 8e-05
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 142 LNPS-YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
++P + + Y + DEA+ YQK LELDPNN +A+
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW 46
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 74.9 bits (184), Expect = 8e-16
Identities = 11/111 (9%), Positives = 29/111 (26%), Gaps = 11/111 (9%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
+A + + L P A + ++ ++ +
Sbjct: 30 ADAELGMGDTTAGEMAVQRGLALHPGH-----PEAVARLGRV------RWTQQRHAEAAV 78
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
+A P + + + + + + A A Y + +L P
Sbjct: 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITA 129
Score = 51.8 bits (124), Expect = 5e-08
Identities = 9/56 (16%), Positives = 16/56 (28%)
Query: 129 PDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ +L A+ P + A Q+ L L P + +A
Sbjct: 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV 60
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 74.1 bits (182), Expect = 2e-15
Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 16/129 (12%)
Query: 66 QTAISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVS--RAVFYANRSA 115
Q++ +L G F + ++ + AL ++ S A +AN
Sbjct: 465 QSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524
Query: 116 ALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILE 175
A KL + D +I A ++ + L+ + V+ A +Y A+ + L
Sbjct: 525 AYRKL------KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578
Query: 176 LDPNNRDAY 184
+ PN A
Sbjct: 579 ISPNEIMAS 587
Score = 67.6 bits (165), Expect = 3e-13
Identities = 27/156 (17%), Positives = 52/156 (33%), Gaps = 33/156 (21%)
Query: 57 YLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAA 116
YL LE+++ L + + LF +++ + LA + L P Y A+
Sbjct: 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-----YNLDVYPLHLAS 348
Query: 117 LEKL----------------------------ASYLSLEKPDQSILACSKAITLNPSYLK 148
L + YL + K ++ SK+ T++P +
Sbjct: 349 LHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP 408
Query: 149 VYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ A + + D+A++ Y L Y
Sbjct: 409 AWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPY 444
Score = 59.9 bits (145), Expect = 1e-10
Identities = 10/106 (9%), Positives = 27/106 (25%), Gaps = 11/106 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
++ + ++++ Y A R + + Y +L +
Sbjct: 414 AHSFAIEGEHDQAISAYTTAARLFQGT-----HLPYLFLGMQHMQL------GNILLANE 462
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
+ L + + + A+ +Q L L
Sbjct: 463 YLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508
Score = 58.7 bits (142), Expect = 3e-10
Identities = 24/136 (17%), Positives = 37/136 (27%), Gaps = 26/136 (19%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQS-- 132
G L+ + + Y EAL + + + A E+ L L S
Sbjct: 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266
Query: 133 ------------------------ILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALA 168
+I + +A + + LA
Sbjct: 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLA 326
Query: 169 DYQKILELDPNNRDAY 184
KILE+DP N D Y
Sbjct: 327 ITTKILEIDPYNLDVY 342
Score = 57.5 bits (139), Expect = 6e-10
Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G +N+ SE+ ++++ P+ + + + + + DQ+I
Sbjct: 380 GIYYLCVNKISEARRYFSKSSTMDPQF-----GPAWIGFAHS------FAIEGEHDQAIS 428
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
A + A L Y + Q + A Q L +
Sbjct: 429 AYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLL 478
Score = 54.8 bits (132), Expect = 5e-09
Identities = 12/115 (10%), Positives = 33/115 (28%), Gaps = 11/115 (9%)
Query: 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKP 129
SL Y ++ +S + ++ L + +
Sbjct: 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDL-----LLCKADTLFVRSRF------ 321
Query: 130 DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ +K + ++P L VY +S + ++ +++ P +
Sbjct: 322 IDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTW 376
Score = 48.3 bits (115), Expect = 7e-07
Identities = 12/86 (13%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G+A +L + ++ N+ L +V + + YL + P +I
Sbjct: 523 GHAYRKLKMYDAAIDALNQGLLLSTNDANV-----HTAIALV------YLHKKIPGLAIT 571
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQS 160
+++ ++P+ + R +++
Sbjct: 572 HLHESLAISPNEIMASDLLKRALEEN 597
Score = 42.9 bits (101), Expect = 4e-05
Identities = 20/139 (14%), Positives = 40/139 (28%), Gaps = 17/139 (12%)
Query: 58 LFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSR-AVFYANRSAA 116
F +K + + N F L Q Y A + +R + +
Sbjct: 104 AFVGEK----VLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159
Query: 117 LEKLASY-----------LSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDE 165
L KL + + + + + + R ++Y D
Sbjct: 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEA-SMCYLRGQVYTNLSNFDR 218
Query: 166 ALADYQKILELDPNNRDAY 184
A Y++ L +D +A+
Sbjct: 219 AKECYKEALMVDAKCYEAF 237
Score = 30.6 bits (69), Expect = 0.47
Identities = 8/65 (12%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 122 SYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181
L ++ + K + + + + A++Y + A K + ++
Sbjct: 93 DALMQQQYKCAAFVGEKVLDITGNPNDAFW-LAQVYCCTGDYARAKCLLTKEDLYNRSSA 151
Query: 182 DAYVA 186
Y+A
Sbjct: 152 CRYLA 156
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 71.4 bits (176), Expect = 2e-15
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 11/115 (9%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS-----LEKP 129
+L + +L + PR Y S A L
Sbjct: 46 ARTQLKLGLVNPALENGKTLVARTPRY-----LGGYMVLSEAYVALYRQAEDRERGKGYL 100
Query: 130 DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+Q++ A +NP Y ++ +R +Y + D+A A ++ L L+ +
Sbjct: 101 EQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTP-EIR 154
Score = 71.0 bits (175), Expect = 2e-15
Identities = 17/121 (14%), Positives = 39/121 (32%), Gaps = 22/121 (18%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G L+ L ++ +L + AL+ P+ + K L + ++
Sbjct: 12 GVQLYALGRYDAALTLFERALKENPQD-----PEALYWLARTQLK------LGLVNPALE 60
Query: 135 ACSKAITLNPSYLKVY-----------QRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
+ P YL Y ++ + L++AL+ + ++P
Sbjct: 61 NGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPL 120
Query: 184 Y 184
+
Sbjct: 121 H 121
Score = 63.7 bits (156), Expect = 1e-12
Identities = 16/120 (13%), Positives = 33/120 (27%), Gaps = 20/120 (16%)
Query: 68 AISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEK 119
A + G L + ++ A +AL + +
Sbjct: 110 AERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT------PEIRSALAELYLS 163
Query: 120 LASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179
+ + D+++ +KA+ P L + R A K +EA +
Sbjct: 164 M------GRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217
Score = 62.6 bits (153), Expect = 3e-12
Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 12/113 (10%)
Query: 72 KDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQ 131
+ + ++L+ +A R PR A + R L + D+
Sbjct: 88 RQAEDRERGKGYLEQALSVLKDAERVNPRY-----APLHLQRGLVYALL------GERDK 136
Query: 132 SILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ + +A+ L ++ A LY +LDEALA Y K LE P + D
Sbjct: 137 AEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLR 188
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 72.3 bits (178), Expect = 3e-15
Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 11/128 (8%)
Query: 57 YLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAA 116
Y F + + +EG ++ +L +E+ + ++ P R + +
Sbjct: 10 YPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-----EREEAWRSLGLT 64
Query: 117 LEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
+ EK +I+A + A L+P + V+ A + + ALA + L
Sbjct: 65 QAEN------EKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 118
Query: 177 DPNNRDAY 184
P
Sbjct: 119 QPQYEQLG 126
Score = 71.9 bits (177), Expect = 4e-15
Identities = 18/133 (13%), Positives = 45/133 (33%), Gaps = 11/133 (8%)
Query: 52 FHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYA 111
+ L + ++ ++++ E N++ E + AL P + +A
Sbjct: 122 YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL-----HA 176
Query: 112 NRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQ 171
+ D + +A+ L P +++ + ++ EAL Y
Sbjct: 177 SLGVLYNLS------NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYN 230
Query: 172 KILELDPNNRDAY 184
+ L+++P
Sbjct: 231 RALDINPGYVRVM 243
Score = 69.2 bits (170), Expect = 3e-14
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G N + + A A+ P A + A L +P +++
Sbjct: 179 GVLYNLSNNYDSAAANLRRAVELRPDD-----AQLWNKLGATLANG------NRPQEALD 227
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
A ++A+ +NP Y++V A Y + D A + + +
Sbjct: 228 AYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPT 277
Score = 58.8 bits (143), Expect = 2e-10
Identities = 12/127 (9%), Positives = 35/127 (27%), Gaps = 26/127 (20%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G + ++ N A P+ +A + + + ++
Sbjct: 62 GLTQAENEKDGLAIIALNHARMLDPKD-----IAVHAALAVSHTNE------HNANAALA 110
Query: 135 ACSKAITLNPSYLKVYQRRAR---------------LYQQSDKLDEALADYQKILELDPN 179
+ + P Y ++ + + ++ E LE++PN
Sbjct: 111 SLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN 170
Query: 180 NRDAYVA 186
+ + +
Sbjct: 171 DAQLHAS 177
Score = 47.3 bits (113), Expect = 1e-06
Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 31/131 (23%)
Query: 66 QTAISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAAL 117
+ A+ L+ + G L N+ E+L YN AL P R N + +
Sbjct: 196 RRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY---VRV--MYNMAVSY 250
Query: 118 EKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRA------------RLYQQSDKLDE 165
++ Y D + +AI + + L ++ D
Sbjct: 251 SNMSQY------DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304
Query: 166 ALADYQKILEL 176
Y + +E
Sbjct: 305 VELTYAQNVEP 315
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 71.1 bits (175), Expect = 3e-15
Identities = 24/128 (18%), Positives = 43/128 (33%), Gaps = 19/128 (14%)
Query: 66 QTAISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAAL 117
+ A++ G L+ ++ E+ + EA + Y RS
Sbjct: 95 RKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD----------TLYPERSRVF 144
Query: 118 EKLAS-YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
E L L ++KP Q+ K++ LN + V A L + + A Y +
Sbjct: 145 ENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQG 204
Query: 177 DPNNRDAY 184
N +
Sbjct: 205 GGQNARSL 212
Score = 59.6 bits (145), Expect = 6e-11
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 121 ASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
YL +Q+ + KA+ ++PS + A ++Q + A +Y+K L D N
Sbjct: 45 LGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN 104
Query: 181 RDAY 184
Sbjct: 105 ARVL 108
Score = 54.6 bits (132), Expect = 3e-09
Identities = 15/112 (13%), Positives = 33/112 (29%), Gaps = 13/112 (11%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G + ++ +AL P S A +A + + +P +
Sbjct: 44 GLGYLQRGNTEQAKVPLRKALEIDPSS-----ADAHAALAVVFQTE------MEPKLADE 92
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILE--LDPNNRDAY 184
KA+ + +V + + +EA + + L P +
Sbjct: 93 EYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVF 144
Score = 54.6 bits (132), Expect = 3e-09
Identities = 11/109 (10%), Positives = 32/109 (29%), Gaps = 11/109 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G ++ + +++ + ++LR + + L K + +
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRN-----QPSVALEMADLLYKE------REYVPARQ 196
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
+ RL + + D A + ++ L P + +
Sbjct: 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245
Score = 50.0 bits (120), Expect = 1e-07
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 109 FYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALA 168
+ + S+ L S++ + P K Y + Y Q ++A
Sbjct: 6 HHHHHSSGLVPRGSHMGDQNP-------LKTDKGRDEARDAYIQLGLGYLQRGNTEQAKV 58
Query: 169 DYQKILELDPNNRDAY 184
+K LE+DP++ DA+
Sbjct: 59 PLRKALEIDPSSADAH 74
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 72.9 bits (179), Expect = 3e-15
Identities = 18/110 (16%), Positives = 29/110 (26%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G L L +A P+ V A+ S + L E + +
Sbjct: 249 GGGKQALETVQRLLPVLCQAHGLTPQQ-----VVAIASNSGGKQAL------ETVQRLLP 297
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+A L P + Q + + L + L P A
Sbjct: 298 VLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAI 347
Score = 72.5 bits (178), Expect = 4e-15
Identities = 17/110 (15%), Positives = 28/110 (25%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G L L +A P+ V A+ + L E + +
Sbjct: 181 GGGKQALETVQRLLPVLCQAHGLTPQQ-----VVAIASNGGGKQAL------ETVQRLLP 229
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+A L P + Q + + L + L P A
Sbjct: 230 VLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAI 279
Score = 72.5 bits (178), Expect = 5e-15
Identities = 15/110 (13%), Positives = 26/110 (23%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
L L +A P V A+ + L + + +
Sbjct: 351 DGGKQALETVQRLLPVLCQAHGLTPEQ-----VVAIASNGGGKQALETV------QRLLP 399
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+A L P + Q + + L + L P A
Sbjct: 400 VLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAI 449
Score = 71.7 bits (176), Expect = 8e-15
Identities = 17/119 (14%), Positives = 29/119 (24%), Gaps = 11/119 (9%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
Q +++ L L +A P V A+ + L
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ-----VVAIASHDGGKQAL----- 153
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
E + +A L P + Q + + L + L P A
Sbjct: 154 -ETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAI 211
Score = 70.2 bits (172), Expect = 3e-14
Identities = 16/110 (14%), Positives = 27/110 (24%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
L L +A P+ V A+ + L E + +
Sbjct: 283 SGGKQALETVQRLLPVLCQAHGLTPQQ-----VVAIASNGGGKQAL------ETVQRLLP 331
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+A L P + Q + + L + L P A
Sbjct: 332 VLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAI 381
Score = 70.2 bits (172), Expect = 3e-14
Identities = 15/112 (13%), Positives = 28/112 (25%), Gaps = 11/112 (9%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G L L +A P V A+ + L + + +
Sbjct: 385 GGGKQALETVQRLLPVLCQAHGLTPEQ-----VVAIASHDGGKQALETV------QRLLP 433
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186
+A L P + + + L+ L N+ +A
Sbjct: 434 VLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALA 485
Score = 64.4 bits (157), Expect = 3e-12
Identities = 18/127 (14%), Positives = 37/127 (29%), Gaps = 9/127 (7%)
Query: 61 SQKLEQTAISLK---DEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAAL 117
+ +L + L A E++ + AL P + + + V A+
Sbjct: 23 AGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGK 82
Query: 118 EKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177
+ L + + + +A L P + Q + + L + L
Sbjct: 83 QALETV------QRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 136
Query: 178 PNNRDAY 184
P A
Sbjct: 137 PEQVVAI 143
Score = 34.3 bits (79), Expect = 0.026
Identities = 11/81 (13%), Positives = 18/81 (22%), Gaps = 6/81 (7%)
Query: 104 VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKL 163
+ + S A A + + L+ L +R +
Sbjct: 1 LEHHHHHHQWSGARALEALL------TVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVH 54
Query: 164 DEALADYQKILELDPNNRDAY 184
A L L P A
Sbjct: 55 AWRNALTGAPLNLTPEQVVAI 75
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 72.9 bits (178), Expect = 4e-15
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
+ L + + E+L Y EA+R P A Y+N L+++ + ++
Sbjct: 50 ASVLQQQGKLQEALMHYKEAIRISPTF-----ADAYSNMGNTLKEM------QDVQGALQ 98
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
++AI +NP++ + A +++ S + EA+A Y+ L+L P+ DAY
Sbjct: 99 CYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYC 149
Score = 46.3 bits (109), Expect = 3e-06
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182
++++ KA+ + P + + A + QQ KL EAL Y++ + + P D
Sbjct: 19 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 78
Query: 183 AY 184
AY
Sbjct: 79 AY 80
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 69.7 bits (171), Expect = 3e-14
Identities = 15/128 (11%), Positives = 34/128 (26%), Gaps = 11/128 (8%)
Query: 57 YLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAA 116
Y F + + +EG + ++ + A++ P+ +
Sbjct: 53 YQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH-----MEAWQYLGTT 107
Query: 117 LEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
+ E+ +I A + + L P A + +A + L
Sbjct: 108 QAEN------EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 161
Query: 177 DPNNRDAY 184
P
Sbjct: 162 TPAYAHLV 169
Score = 68.9 bits (169), Expect = 6e-14
Identities = 17/111 (15%), Positives = 41/111 (36%), Gaps = 9/111 (8%)
Query: 74 EGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSI 133
+L + + E + A+R P S + D+++
Sbjct: 187 ILGSLLSDSLFLEVKELFLAAVRLDPTS---IDPDVQCGLGVLFNLS------GEYDKAV 237
Query: 134 LACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ A+++ P+ ++ + ++ +EA+A Y++ LEL P +
Sbjct: 238 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 288
Score = 68.1 bits (167), Expect = 1e-13
Identities = 15/110 (13%), Positives = 37/110 (33%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G ++ +++ + AL P + + A L + ++++
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALSVRPND-----YLLWNKLGATLANG------NQSEEAVA 272
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
A +A+ L P Y++ EA+ + + L + +R
Sbjct: 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 322
Score = 66.6 bits (163), Expect = 4e-13
Identities = 18/114 (15%), Positives = 47/114 (41%), Gaps = 8/114 (7%)
Query: 72 KDEGNALFRLNQWSE-SLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPD 130
K + A L+ + + + A Y++ + + + E+ L
Sbjct: 29 KRDAEAHPWLSDYDDLTSATYDKGYQFEEEN-------PLRDHPQPFEEGLRRLQEGDLP 81
Query: 131 QSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
++L A+ +P +++ +Q ++++ A++ ++ LEL P+N+ A
Sbjct: 82 NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 135
Score = 58.5 bits (142), Expect = 2e-10
Identities = 13/126 (10%), Positives = 26/126 (20%), Gaps = 26/126 (20%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G Q +++ L P + + + Q+
Sbjct: 105 GTTQAENEQELLAISALRRCLELKPDN-----QTALMALAVSFTNE------SLQRQACE 153
Query: 135 ACSKAITLNPSYLKVYQRRARLY---------------QQSDKLDEALADYQKILELDPN 179
+ P+Y + E + + LDP
Sbjct: 154 ILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPT 213
Query: 180 NRDAYV 185
+ D V
Sbjct: 214 SIDPDV 219
Score = 49.3 bits (118), Expect = 3e-07
Identities = 19/133 (14%), Positives = 35/133 (26%), Gaps = 30/133 (22%)
Query: 66 QTAISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAAL 117
A+S++ G L NQ E++A Y AL P R+ N +
Sbjct: 241 TAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY---IRS--RYNLGISC 295
Query: 118 EKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLY-----------QQSDKLDEA 166
L +++ +A+ + + + D
Sbjct: 296 INL------GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349
Query: 167 LADYQKILELDPN 179
A + L
Sbjct: 350 GAADARDLSTLLT 362
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 67.8 bits (166), Expect = 4e-14
Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 15/118 (12%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
AISL +EG W +L ++ R N Y L+
Sbjct: 6 AISLWNEGVLAADKKDWKGALDAFSAVQDPHSR--------ICFNIGCM------YTILK 51
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQK-ILELDPNNRDAY 184
++ A +++I + Y +R LY Q++K D A+ D ++ +++L N Y
Sbjct: 52 NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDY 109
Score = 53.2 bits (128), Expect = 6e-09
Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 27/126 (21%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G L +E+ + ++ AV Y R Y EK D +I
Sbjct: 44 GCMYTILKNMTEAEKAFTRSINRDKHL-----AVAYFQRGML------YYQTEKYDLAIK 92
Query: 135 ACSKAIT-LNPSYLKVYQR---------------RARLYQQSDKLDEALADYQKILELDP 178
+A+ L + L Y+ A +Y + ++ +A +
Sbjct: 93 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152
Query: 179 NNRDAY 184
R +
Sbjct: 153 EPRHSK 158
Score = 40.9 bits (96), Expect = 1e-04
Identities = 14/113 (12%), Positives = 35/113 (30%), Gaps = 25/113 (22%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLA---------SYLS 125
G ++ ++ ++ EAL + + + Y + A Y
Sbjct: 78 GMLYYQTEKYDLAIKDLKEALIQLRGN----QLIDYKILGLQFKLFACEVLYNIAFMYAK 133
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDP 178
E+ ++ + A ++ + K+D+A+ K +P
Sbjct: 134 KEEWKKAEEQLALATSMKSEP------------RHSKIDKAMECVWKQKLYEP 174
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 69.3 bits (170), Expect = 5e-14
Identities = 18/128 (14%), Positives = 40/128 (31%), Gaps = 11/128 (8%)
Query: 57 YLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAA 116
Y F ++ + +EG + ++ A+ P A +
Sbjct: 54 YYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-----GDAEAWQFLGIT 108
Query: 117 LEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
+ E +I+A + + L P+ LK A Y + +A + ++
Sbjct: 109 QAEN------ENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ 162
Query: 177 DPNNRDAY 184
+P +
Sbjct: 163 NPKYKYLV 170
Score = 68.9 bits (169), Expect = 6e-14
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 7/113 (6%)
Query: 72 KDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQ 131
+ + + Q +++ + + + A E+ L
Sbjct: 31 RRNWISENQEAQNQVTVSASEKGYYFHT-------ENPFKDWPGAFEEGLKRLKEGDLPV 83
Query: 132 SILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+IL AI +P + +Q +++ A+ Q+ LEL PNN A
Sbjct: 84 TILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKAL 136
Score = 68.5 bits (168), Expect = 8e-14
Identities = 15/110 (13%), Positives = 41/110 (37%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G +++ ++ +N AL P + A L ++ ++++
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALTVRPED-----YSLWNRLGATLANG------DRSEEAVE 268
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
A ++A+ + P +++ EA++++ L L +R+
Sbjct: 269 AYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQ 318
Score = 68.5 bits (168), Expect = 9e-14
Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 9/114 (7%)
Query: 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPD 130
+ + + Y EA + + +
Sbjct: 180 TRRMSKSPVDSSVLEGVKELYLEAAHQNG---DMIDPDLQTGLGVLFHLS------GEFN 230
Query: 131 QSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
++I A + A+T+ P ++ R D+ +EA+ Y + LE+ P +
Sbjct: 231 RAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSR 284
Score = 52.0 bits (125), Expect = 3e-08
Identities = 12/121 (9%), Positives = 26/121 (21%), Gaps = 21/121 (17%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G ++ L P + + + +
Sbjct: 106 GITQAENENEQAAIVALQRCLELQPNN-----LKALMALAVSYTNT------SHQQDACE 154
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQ----------SDKLDEALADYQKILELDPNNRDAY 184
A I NP Y + + + S L+ Y + + + D
Sbjct: 155 ALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD 214
Query: 185 V 185
+
Sbjct: 215 L 215
Score = 44.3 bits (105), Expect = 1e-05
Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 38/140 (27%)
Query: 66 QTAISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAAL 117
A++++ E G L ++ E++ Y AL P R+ N +
Sbjct: 237 NAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF---IRS--RYNLGISC 291
Query: 118 EKLASYLSLEKPDQSILACSKAITLNPSY--------------LKVYQRRARLYQQSDKL 163
L +Y +++ A++L + R A +L
Sbjct: 292 INLGAY------REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPEL 345
Query: 164 DEA-----LADYQKILELDP 178
+A L + LDP
Sbjct: 346 FQAANLGDLDVLLRAFNLDP 365
Score = 42.7 bits (101), Expect = 5e-05
Identities = 6/74 (8%), Positives = 16/74 (21%)
Query: 111 ANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADY 170
R + + + S + L +
Sbjct: 29 MARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFM 88
Query: 171 QKILELDPNNRDAY 184
+ + DP + +A+
Sbjct: 89 EAAILQDPGDAEAW 102
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 64.4 bits (158), Expect = 8e-14
Identities = 12/108 (11%), Positives = 41/108 (37%), Gaps = 13/108 (12%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G + ++ES+ + +A++ P + ++ + AL L E+ ++++
Sbjct: 13 GVLQYDAGNYTESIDLFEKAIQLDPEE-----SKYWLMKGKALYNL------ERYEEAVD 61
Query: 135 ACSKAITLNPSYLKV--YQRRARLYQQSDKLDEALADYQKILELDPNN 180
+ I + + +A + + + + +L+ ++
Sbjct: 62 CYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
Score = 55.9 bits (136), Expect = 1e-10
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 6/74 (8%)
Query: 110 YANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALAD 169
Y +SI KAI L+P K + + + ++ +EA+
Sbjct: 9 YYLEGVLQYDA------GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62
Query: 170 YQKILELDPNNRDA 183
Y ++ + + +
Sbjct: 63 YNYVINVIEDEYNK 76
Score = 40.1 bits (95), Expect = 7e-05
Identities = 7/43 (16%), Positives = 17/43 (39%)
Query: 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ + Y L + E++ ++K ++LDP +
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYW 43
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 64.4 bits (157), Expect = 2e-13
Identities = 17/122 (13%), Positives = 37/122 (30%), Gaps = 11/122 (9%)
Query: 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL 124
E T L G ++ +W ++ + A ++ A + L Y
Sbjct: 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD-----ARYFLGLGACRQSLGLY- 68
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+Q++ + S ++ + + A + Q LD A + + L
Sbjct: 69 -----EQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHE 123
Query: 185 VA 186
Sbjct: 124 AL 125
Score = 45.5 bits (108), Expect = 1e-06
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 138 KAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
L+ L+ Q+ K D+A +Q + LD + +
Sbjct: 9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYF 55
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 62.7 bits (153), Expect = 4e-13
Identities = 14/117 (11%), Positives = 33/117 (28%), Gaps = 11/117 (9%)
Query: 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP 144
+ L + + Y E+ D ++ A+ +P
Sbjct: 2 QAITERLEAMLAQGTDN-----MLLRFTLGKT------YAEHEQFDAALPHLRAALDFDP 50
Query: 145 SYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGA 201
+Y ++ + Q A ++ L + D V ++ L+ + A
Sbjct: 51 TYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDA 107
Score = 32.7 bits (75), Expect = 0.028
Identities = 2/22 (9%), Positives = 6/22 (27%)
Query: 163 LDEALADYQKILELDPNNRDAY 184
+ + +L +N
Sbjct: 1 MQAITERLEAMLAQGTDNMLLR 22
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 66.1 bits (161), Expect = 7e-13
Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 10/113 (8%)
Query: 75 GNALFRLNQW---SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQ 131
A +RL+ W ++ +A+R P + + L K+ E+ +
Sbjct: 179 AIASYRLDNWPPSQNAIDPLRQAIRLNPDN-----QYLKVLLALKLHKM--REEGEEEGE 231
Query: 132 SILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+A+ P V + A+ Y++ D+ D+A+ +K LE PNN +
Sbjct: 232 GEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284
Score = 57.6 bits (139), Expect = 5e-10
Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 8/117 (6%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSV--SRAVFYANRSAALEKLASYLS------L 126
R ++ +++ +AL P + + Y + + L L
Sbjct: 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313
Query: 127 EKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
E ++ KA N + +V A L+ +D+ +EA +QK +
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370
Score = 53.8 bits (129), Expect = 1e-08
Identities = 15/117 (12%), Positives = 37/117 (31%), Gaps = 10/117 (8%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSR---AVFYANRSAALEKLASYLSLEKPDQ 131
+ + + S+ ++ C + S R K + ++
Sbjct: 101 AWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKC----GGNQNER 156
Query: 132 SILACSKAITLNPSYLKVYQRRARLYQQSDKL---DEALADYQKILELDPNNRDAYV 185
+ + KA+ P + A + D A+ ++ + L+P+N+ V
Sbjct: 157 AKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKV 213
Score = 51.5 bits (123), Expect = 6e-08
Identities = 15/107 (14%), Positives = 38/107 (35%), Gaps = 21/107 (19%)
Query: 78 LFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACS 137
L+++ +++ + E ++ +S L+K+A
Sbjct: 382 LYQMKCEDKAIHHFIEGVKINQKS------REKEKMKDKLQKIAK--------------- 420
Query: 138 KAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
++ N + + A L + ++K+ +A D ++ LE A
Sbjct: 421 MRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467
Score = 48.4 bits (115), Expect = 6e-07
Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 8/118 (6%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRS----CSVSRAVFYANRSAALEKLASYL----SL 126
Q +L +A + + V + N + + +
Sbjct: 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV 117
Query: 127 EKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+K S + L + RL ++ + A ++K LE P N +
Sbjct: 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFT 175
Score = 44.9 bits (106), Expect = 1e-05
Identities = 21/135 (15%), Positives = 40/135 (29%), Gaps = 36/135 (26%)
Query: 75 GNALFRL----NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLAS-YLSLEKP 129
L ++ + E EAL P + L A Y ++P
Sbjct: 216 ALKLHKMREEGEEEGEGEKLVEEALEKAP------------GVTDVLRSAAKFYRRKDEP 263
Query: 130 DQSILACSKAITLNPSYLKVYQRRARLYQQ-------------------SDKLDEALADY 170
D++I KA+ P+ ++ + Y+ + + A+A
Sbjct: 264 DKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHL 323
Query: 171 QKILELDPNNRDAYV 185
+K E + N
Sbjct: 324 KKADEANDNLFRVCS 338
Score = 27.6 bits (61), Expect = 4.4
Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 1/54 (1%)
Query: 136 CSKAITLNPSYL-KVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATK 188
+ N + + A L + + AL +K EL +
Sbjct: 39 FYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR 92
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 65.4 bits (159), Expect = 1e-12
Identities = 16/117 (13%), Positives = 30/117 (25%), Gaps = 11/117 (9%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
+++ L L +A P V A+ + L E
Sbjct: 260 VVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ-----VVAIASHGGGKQAL------E 308
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ + +A L P + Q + + L + L P+ A
Sbjct: 309 TVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAI 365
Score = 65.4 bits (159), Expect = 2e-12
Identities = 15/117 (12%), Positives = 31/117 (26%), Gaps = 11/117 (9%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
+++ L L +A P + V A+ + L +
Sbjct: 226 VVAIASHDGGKQALETMQRLLPVLCQAHGLPP-----DQVVAIASNIGGKQALETV---- 276
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ + +A L P + Q + + L + L P+ A
Sbjct: 277 --QRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAI 331
Score = 65.4 bits (159), Expect = 2e-12
Identities = 14/110 (12%), Positives = 27/110 (24%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
L L +A P ++ V A+ + L + + +
Sbjct: 606 IGGKQALETVQRLLPVLCQAHGLTP-----AQVVAIASHDGGKQALETV------QRLLP 654
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+A L P + Q + + L + L A
Sbjct: 655 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAI 704
Score = 63.9 bits (155), Expect = 5e-12
Identities = 16/110 (14%), Positives = 28/110 (25%), Gaps = 12/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G L L +A P ++ A+ +LE + +
Sbjct: 369 GGGKQALETVQRLLPVLCQAHGLTP------------DQVVAIASNGGKQALETVQRLLP 416
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+A L P + Q + + L + L P A
Sbjct: 417 VLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAI 466
Score = 63.9 bits (155), Expect = 5e-12
Identities = 22/145 (15%), Positives = 41/145 (28%), Gaps = 16/145 (11%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
+++ G L L +A P V A+ + L E
Sbjct: 294 VVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQ-----VVAIASHDGGKQAL------E 342
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVAT 187
+ + +A L P + Q + + L + L P+ A +
Sbjct: 343 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 402
Query: 188 KVSPDLKLKEK-----NGATKLSPD 207
L+ ++ A L+PD
Sbjct: 403 GGKQALETVQRLLPVLCQAHGLTPD 427
Score = 62.4 bits (151), Expect = 2e-11
Identities = 16/119 (13%), Positives = 30/119 (25%), Gaps = 11/119 (9%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
+++ L L +A P V A+ + L
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQ-----VVAIASHDGGKQAL----- 239
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
E + + +A L P + Q + + L + L P+ A
Sbjct: 240 -ETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAI 297
Score = 59.3 bits (143), Expect = 2e-10
Identities = 14/110 (12%), Positives = 25/110 (22%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
L L +A P V A+ + L + + +
Sbjct: 504 IGGKQALATVQRLLPVLCQAHGLTPDQ-----VVAIASNGGGKQALETV------QRLLP 552
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+A L P + Q + + L + L A
Sbjct: 553 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAI 602
Score = 59.3 bits (143), Expect = 2e-10
Identities = 14/110 (12%), Positives = 27/110 (24%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
L L +A P + V A+ + L + + +
Sbjct: 640 DGGKQALETVQRLLPVLCQAHGLTP-----DQVVAIASNGGGKQALETV------QRLLP 688
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+A L + Q + + L + L P+ A
Sbjct: 689 VLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAI 738
Score = 58.1 bits (140), Expect = 4e-10
Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
Query: 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145
E++ AL P + + ++ V A+ + +LE + + +A L P+
Sbjct: 171 EAVHASRNALTGAPLNLTPAQVVAIASNNGG------KQALETVQRLLPVLCQAHGLTPA 224
Query: 146 YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ Q + + L + L P+ A
Sbjct: 225 QVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAI 263
Score = 55.0 bits (132), Expect = 5e-09
Identities = 15/110 (13%), Positives = 28/110 (25%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G L L +A + V A+ + + L + + +
Sbjct: 674 GGGKQALETVQRLLPVLCQAHGLTQ-----EQVVAIASNNGGKQALETV------QRLLP 722
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+A L P + Q + + L + L P A
Sbjct: 723 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAI 772
Score = 53.9 bits (129), Expect = 1e-08
Identities = 15/119 (12%), Positives = 29/119 (24%), Gaps = 11/119 (9%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
+++ G L L +A P V A+ + L +
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ-----VVAIASNGGGKQALETV-- 581
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ + +A L + Q + + L + L P A
Sbjct: 582 ----QRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAI 636
Score = 53.1 bits (127), Expect = 2e-08
Identities = 15/110 (13%), Positives = 25/110 (22%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
L L + P V A+ + L + Q +
Sbjct: 436 DGGKQALETVQRLLPVLCQTHGLTPAQ-----VVAIASHDGGKQALETV------QQLLP 484
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+A L P + Q + L + L P+ A
Sbjct: 485 VLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAI 534
Score = 50.4 bits (120), Expect = 2e-07
Identities = 16/121 (13%), Positives = 36/121 (29%), Gaps = 5/121 (4%)
Query: 73 DEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQS 132
D+ A+ ++L L + ++ ++ A+ +LE +
Sbjct: 869 DQVVAIASNIGGKQALETVQRLLPVLCQDHGLT-----LDQVVAIASNGGKQALETVQRL 923
Query: 133 ILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPD 192
+ + L P + + Q + + L + L PN A +
Sbjct: 924 LPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASNGGKQA 983
Query: 193 L 193
L
Sbjct: 984 L 984
Score = 46.9 bits (111), Expect = 2e-06
Identities = 16/120 (13%), Positives = 37/120 (30%), Gaps = 9/120 (7%)
Query: 68 AISLK-DEGNALFRLNQWSESLAKYNEALRSCPRSCSVS--RAVFYANRSAALEKLASYL 124
A L ++ A+ N ++L L ++ ++ + V A+ + L +
Sbjct: 693 AHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV- 751
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ + +A L P+ + Q + + L + L A
Sbjct: 752 -----QRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAI 806
Score = 45.4 bits (107), Expect = 8e-06
Identities = 18/150 (12%), Positives = 43/150 (28%), Gaps = 9/150 (6%)
Query: 73 DEGNALFRLNQWSESLAKYNEALRSCPRSCSVS--RAVFYANRSAALEKLASYLSLEKPD 130
+ A+ ++L L ++ ++ + V A+ + L +
Sbjct: 801 AQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETV------Q 854
Query: 131 QSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190
+ + + L P + Q + + L + L + A +
Sbjct: 855 RLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGK 914
Query: 191 PDLKLKEKNGATKLSPDVFLHPGQPQIQHN 220
L+ ++ L D L P Q +
Sbjct: 915 QALETVQRLLPV-LCQDHGLTPDQVVAIAS 943
Score = 40.8 bits (95), Expect = 2e-04
Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 5/118 (4%)
Query: 68 AISLK-DEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSL 126
A L + A+ ++L L + ++ A A + +L
Sbjct: 761 AHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLT----LAQVVAIASNIGGKQAL 816
Query: 127 EKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
E + + +A L + Q + + L + L P+ A
Sbjct: 817 ETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAI 874
Score = 36.2 bits (83), Expect = 0.009
Identities = 14/103 (13%), Positives = 31/103 (30%), Gaps = 5/103 (4%)
Query: 87 SLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146
+L+++ AL + + + + S + +++L + + P
Sbjct: 93 ALSQHPAALGTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQ 152
Query: 147 LKVYQRRARLYQQSDKLDEALADYQKIL-----ELDPNNRDAY 184
L Q + EA+ + L L P A
Sbjct: 153 LDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAI 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 60.7 bits (148), Expect = 2e-12
Identities = 11/62 (17%), Positives = 29/62 (46%)
Query: 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182
+L + +++ + + +P Y+ Y +LY++ D+ D+A+ Y + +E+
Sbjct: 17 HLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76
Query: 183 AY 184
Sbjct: 77 QK 78
Score = 40.7 bits (96), Expect = 3e-05
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 143 NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+P A+ + + D ALA +++++E DP+ Y
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTY 44
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 59.8 bits (145), Expect = 6e-12
Identities = 14/77 (18%), Positives = 27/77 (35%)
Query: 110 YANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALAD 169
Y +E+ S L L ++ LA P + ++ +++K A+
Sbjct: 14 YMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIA 73
Query: 170 YQKILELDPNNRDAYVA 186
LDP + + A
Sbjct: 74 LNHARMLDPKDIAVHAA 90
Score = 55.2 bits (133), Expect = 3e-10
Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 13/124 (10%)
Query: 57 YLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAA 116
Y F + + +EG ++ +L +E+ + + P R A
Sbjct: 6 YPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEP------------EREEA 53
Query: 117 LEKL-ASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILE 175
L + EK +I+A + A L+P + V+ A + + ALA + L
Sbjct: 54 WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL 113
Query: 176 LDPN 179
P
Sbjct: 114 SQPQ 117
Score = 32.8 bits (75), Expect = 0.030
Identities = 10/73 (13%), Positives = 20/73 (27%), Gaps = 13/73 (17%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLA-SYLSLEKPDQSI 133
G + ++ N A P A LA S+ + + ++
Sbjct: 58 GLTQAENEKDGLAIIALNHARMLDP------------KDIAVHAALAVSHTNEHNANAAL 105
Query: 134 LACSKAITLNPSY 146
+ + P Y
Sbjct: 106 ASLRAWLLSQPQY 118
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 58.6 bits (143), Expect = 8e-12
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 110 YANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALAD 169
+ N A K D++I KA+ L+P+ + + Y + DEA+
Sbjct: 12 WYNLGNAYYKQ------GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 170 YQKILELDPNNRDAY 184
YQK LELDPNN +A
Sbjct: 66 YQKALELDPNNAEAK 80
Score = 38.9 bits (92), Expect = 1e-04
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 142 LNPS-YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
++P + + Y + DEA+ YQK LELDPNN +A+
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 61.5 bits (150), Expect = 9e-12
Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 20/129 (15%)
Query: 66 QTAISLKDE--------GNALF-RLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAA 116
+ A+S+K + G L RLN+ +ES+A +++AL Y A
Sbjct: 66 RQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD----------PTYPTPYIA 115
Query: 117 LEKLAS-YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILE 175
+ + +++ P + ++ AR + +L +A ++K
Sbjct: 116 NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQS 175
Query: 176 LDPNNRDAY 184
+
Sbjct: 176 RVEVLQADD 184
Score = 56.5 bits (137), Expect = 4e-10
Identities = 12/64 (18%), Positives = 28/64 (43%)
Query: 121 ASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
Y+ + Q+ + A+ +P + RA +YQ D+A +++ L + P++
Sbjct: 16 MEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS 75
Query: 181 RDAY 184
+
Sbjct: 76 AEIN 79
Score = 54.6 bits (132), Expect = 2e-09
Identities = 20/127 (15%), Positives = 50/127 (39%), Gaps = 14/127 (11%)
Query: 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKL 120
++K Q + R + ++ A +AL+S P++ + + R+ +
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN-----ELAWLVRAEIYQY- 54
Query: 121 ASYLSLEKPDQSILACSKAITLNPSYLKVYQRRAR-LYQQSDKLDEALADYQKILE--LD 177
L+ D++ + +A+++ P ++ L + ++ E++A + K L
Sbjct: 55 -----LKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTY 109
Query: 178 PNNRDAY 184
P A
Sbjct: 110 PTPYIAN 116
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 60.8 bits (147), Expect = 4e-11
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 10/103 (9%)
Query: 82 NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141
+ ++L + E L S A + AL Y ++ + SKA+
Sbjct: 82 EEMEKTLQQMEEVLGSAQVE-----AQALMLKGKALNVTPDYS-----PEAEVLLSKAVK 131
Query: 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
L P ++ + + +Y + + A + L N
Sbjct: 132 LEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQ 174
Score = 56.9 bits (137), Expect = 1e-09
Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 20/124 (16%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKP---DQ 131
G ++ + + ++ AL C V N S L +L + E
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTHCKN------KVSLQNLSMVLRQLQTDSGDEHSRHVMD 197
Query: 132 SILACSKAITLNPSYLKVYQRRARLY--------QQSDKLDEALADYQKILELD---PNN 180
S+ A+ ++ + + Y Q +AL+ Y + ++D +N
Sbjct: 198 SVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257
Query: 181 RDAY 184
D +
Sbjct: 258 PDLH 261
Score = 52.3 bits (125), Expect = 3e-08
Identities = 14/119 (11%), Positives = 37/119 (31%), Gaps = 20/119 (16%)
Query: 75 GNALFRL-NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSI 133
G AL + E+ ++A++ P + K +
Sbjct: 109 GKALNVTPDYSPEAEVLLSKAVKLEP-----ELVEAWNQLGEVYWKKGDV------TSAH 157
Query: 134 LACSKAITLNPSYLKVYQRRARLYQQ--------SDKLDEALADYQKILELDPNNRDAY 184
S A+T + + + L Q S + +++ + +++D + ++
Sbjct: 158 TCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSW 216
Score = 51.9 bits (124), Expect = 4e-08
Identities = 11/120 (9%), Positives = 32/120 (26%), Gaps = 5/120 (4%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
+ + L K + R ++ S
Sbjct: 25 TGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCF----RDSYFETHSVEDAGRKQQDV 80
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD-EALADYQKILELDPNNRDAY 184
E+ ++++ + + + + + + EA K ++L+P +A+
Sbjct: 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAW 140
Score = 51.5 bits (123), Expect = 5e-08
Identities = 29/168 (17%), Positives = 55/168 (32%), Gaps = 27/168 (16%)
Query: 75 GNALFR--------LNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSL 126
GNA ++L+ Y +A + ++ S + NR+ +
Sbjct: 220 GNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA--SSNPDLHLNRATLHKYE------ 271
Query: 127 EKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186
E +++ S+A L+P++ + QR +L + +L L K + +
Sbjct: 272 ESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLR 331
Query: 187 TKVSPDL------KLKEKNGATKLSPDVFLHPGQPQIQHNPETIHGGK 228
+ +L P L PG N T+ GK
Sbjct: 332 PAHLGPCGDGRYQSASGQKMTLELKPLSTLQPG-----VNSGTVVLGK 374
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 56.0 bits (135), Expect = 2e-10
Identities = 7/116 (6%), Positives = 30/116 (25%), Gaps = 11/116 (9%)
Query: 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPD 130
+ + + E+ + + + +A + +
Sbjct: 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-----VDYIMGLAAIYQIKEQF------Q 87
Query: 131 QSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186
Q+ + A L + + + +A ++ +++ + + A
Sbjct: 88 QAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKA 143
Score = 38.6 bits (90), Expect = 4e-04
Identities = 6/47 (12%), Positives = 15/47 (31%)
Query: 138 KAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ + A + +++EA ++ + D N D
Sbjct: 27 DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYI 73
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 55.7 bits (133), Expect = 5e-10
Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 12/128 (9%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVS-------RAVFYANRSAALEKL 120
A + ++ E+ A A+ A +A + AL L
Sbjct: 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL 70
Query: 121 ASY-LSLEKPDQSILACSKAITLNPS----YLKVYQRRARLYQQSDKLDEALADYQKILE 175
S+ +L D+++ ++ LN ++ RA + EA+ +++K++E
Sbjct: 71 RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130
Query: 176 LDPNNRDA 183
+ +
Sbjct: 131 MIEERKGE 138
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 56.2 bits (135), Expect = 1e-09
Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 6/110 (5%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
+ W L ++ L+ R+ SV + R + Y ++ +
Sbjct: 207 QWVIQEFKLWDNELQYVDQLLKEDVRNNSV-----WNQRYFVISNTTGYNDRAVLEREVQ 261
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ I L P + + Q L + ++L+L P++ Y
Sbjct: 262 YTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPY 310
Score = 54.3 bits (130), Expect = 6e-09
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 12/111 (10%)
Query: 75 GNALFRLNQ-WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSI 133
L L + E + + P++ V + +R +E L P Q +
Sbjct: 138 RVLLKSLQKDLHEEMNYITAIIEEQPKNYQV-----WHHRRVLVEWL------RDPSQEL 186
Query: 134 LACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ + + +Q R + Q+ D L ++L+ D N +
Sbjct: 187 EFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW 237
Score = 51.2 bits (122), Expect = 7e-08
Identities = 14/116 (12%), Positives = 40/116 (34%), Gaps = 17/116 (14%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
+ L S+ L + L ++ + +R +++ + D +
Sbjct: 173 RVLVEWLRDPSQELEFIADILNQDAKN-----YHAWQHRQWVIQEF------KLWDNELQ 221
Query: 135 ACSKAITLNPSYLKVYQRRARL------YQQSDKLDEALADYQKILELDPNNRDAY 184
+ + + V+ +R + Y L+ + ++++L P+N A+
Sbjct: 222 YVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAW 277
Score = 40.8 bits (95), Expect = 2e-04
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 119 KLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK-LDEALADYQKILELD 177
A E+ +++ AI LN + V+ R L + K L E + I+E
Sbjct: 103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162
Query: 178 PNNRDAY 184
P N +
Sbjct: 163 PKNYQVW 169
Score = 34.7 bits (79), Expect = 0.019
Identities = 8/46 (17%), Positives = 19/46 (41%)
Query: 139 AITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
I + + VY + Q+ ++ + A + +EL+ N +
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVW 134
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 55.9 bits (134), Expect = 2e-09
Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 122 SYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181
S L K D+S A + I L S+L Y ++Y+ EA Y L P
Sbjct: 286 SALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344
Query: 182 DAYVA 186
Y
Sbjct: 345 TLYWI 349
Score = 41.6 bits (97), Expect = 1e-04
Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 9/102 (8%)
Query: 82 NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILA--CSKA 139
+ + E ++S P A ++ S L++ + L
Sbjct: 213 KSLNRASELLGEIVQSSPEF-----TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267
Query: 140 ITLNPSYL--KVYQRRARLYQQSDKLDEALADYQKILELDPN 179
+TL +YQ +A K DE+ ++L+ +
Sbjct: 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS 309
Score = 38.5 bits (89), Expect = 0.001
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Query: 116 ALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSD--KLDEALADYQKI 173
LE L+ L+ P + K + + L + + D L+ A +I
Sbjct: 166 LLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEI 225
Query: 174 LELDPNNRDAY 184
++ P A
Sbjct: 226 VQSSPEFTYAR 236
Score = 29.3 bits (65), Expect = 1.2
Identities = 13/97 (13%), Positives = 24/97 (24%), Gaps = 13/97 (13%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
+ + ES N + + Y E ++
Sbjct: 284 AVSALVKGKTDESYQAINTGIDLEMS------WLNYVLLGKVYEMKG------MNREAAD 331
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQS-DKLDEALADY 170
A A L P +Y ++Q S + L +
Sbjct: 332 AYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYLDKF 368
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 53.4 bits (128), Expect = 2e-09
Identities = 14/114 (12%), Positives = 33/114 (28%), Gaps = 11/114 (9%)
Query: 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKP 129
L ++ + ++ + + F+ A + + +
Sbjct: 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD-----SRFFLGLGACRQAM------GQY 71
Query: 130 DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
D +I + S ++ + A Q +L EA + EL N +
Sbjct: 72 DLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125
Score = 44.9 bits (106), Expect = 3e-06
Identities = 6/63 (9%), Positives = 15/63 (23%)
Query: 122 SYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181
+ + + L+ + + Q + D A+ Y +D
Sbjct: 30 NQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP 89
Query: 182 DAY 184
Sbjct: 90 RFP 92
Score = 39.9 bits (93), Expect = 1e-04
Identities = 8/47 (17%), Positives = 17/47 (36%)
Query: 138 KAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
++ L+ A QS ++A +Q + LD + +
Sbjct: 12 MLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFF 58
Score = 28.7 bits (64), Expect = 1.1
Identities = 7/92 (7%), Positives = 21/92 (22%), Gaps = 11/92 (11%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G + Q+ ++ Y+ L + ++
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIX-----------EPRFPFHAAECLLQXGELAEAES 110
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEA 166
A L + + + R+ + +
Sbjct: 111 GLFLAQELIANXPEFXELSTRVSSMLEAIKLK 142
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 51.6 bits (124), Expect = 3e-09
Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 117 LEKLASYLSLEKPDQSILACSKAITLNP-SYLKVYQRRARLYQQSDKLDEALADYQKILE 175
L+ + ++ + ++ A + + P + Y Y++ +AL +YQ +E
Sbjct: 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63
Query: 176 LDPNNRDAY 184
L+P++
Sbjct: 64 LNPDSPALQ 72
Score = 43.9 bits (104), Expect = 3e-06
Identities = 18/100 (18%), Positives = 28/100 (28%), Gaps = 18/100 (18%)
Query: 73 DEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQS 132
L +L E L++ P Y A K L ++
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGK----DEAYYLMGNAYRK------LGDWQKA 54
Query: 133 ILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQK 172
+ AI LNP + R+ + + L Y K
Sbjct: 55 LNNYQSAIELNPDSPALQARK--------MVMDILNFYNK 86
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 51.8 bits (124), Expect = 1e-08
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 8/110 (7%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G N +S SL Y +AL+ + + YA + L AS Q+
Sbjct: 51 GEYYLWQNDYSNSLLAYRQALQLRGENAEL-----YAALATVLYYQASQ---HMTAQTRA 102
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
KA+ L+ + + A +A+ +QK+++L+ +
Sbjct: 103 MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152
Score = 50.6 bits (121), Expect = 4e-08
Identities = 16/76 (21%), Positives = 29/76 (38%)
Query: 111 ANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADY 170
A + L + S + P+ + A I NP + + Y + +L Y
Sbjct: 8 AEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAY 67
Query: 171 QKILELDPNNRDAYVA 186
++ L+L N + Y A
Sbjct: 68 RQALQLRGENAELYAA 83
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 1e-06
Identities = 26/215 (12%), Positives = 61/215 (28%), Gaps = 59/215 (27%)
Query: 40 QFERQVFYI---------------QFIFHVLFYLFC-----SQKLEQTAISLKDEGNALF 79
+ + ++F++ Q + + + + S ++ S++ E L
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 80 RLNQWSESL-----AKYNEALR----SCP-----RSCSVSRAVFYANRS----------- 114
+ + L + +A SC R V+ + A +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 115 ---AALEKLASYLSLEKPDQSILACS---KAITLNPSYLKVYQRRARLYQQ--SDKLDEA 166
L YL D + + +++ ++ ++ DKL
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 167 LADYQKILE-LDPNN-RDAYVATKVSP-DLKLKEK 198
+ + L L+P R + V P +
Sbjct: 359 I---ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Score = 42.1 bits (98), Expect = 8e-05
Identities = 39/216 (18%), Positives = 64/216 (29%), Gaps = 56/216 (25%)
Query: 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQF-ERQVFYIQFIFHVLFYLFCSQK 63
P + E + PS + +Y + D F + V +Q K
Sbjct: 97 PIKTE-QRQPSMMTRMYIEQ------RDRLYNDNQVFAKYNVSRLQPY----------LK 139
Query: 64 LEQTAISLKDEGNALFRLN-------QWSESLAKYNEALRSCPRSCSVSRAVFYAN---- 112
L Q + L+ N L ++ W +A + S C + +F+ N
Sbjct: 140 LRQALLELRPAKNVL--IDGVLGSGKTW---VA--LDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 113 --RSAALEKLAS-YLSLEKPDQSILACSKAITLNPSYLKVYQRR---ARLYQQS-DKLD- 164
LE L ++ S S I L ++ RR ++ Y+ L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 165 -------EALADYQ-KILELDPNNRDAYVATKVSPD 192
A + KIL R V +S
Sbjct: 253 VQNAKAWNAF-NLSCKILLT---TRFKQVTDFLSAA 284
Score = 34.4 bits (78), Expect = 0.032
Identities = 31/193 (16%), Positives = 58/193 (30%), Gaps = 63/193 (32%)
Query: 10 LSKNP-SFLYTIYFSCFILFILFSEIRTDCHQ--------------------FERQVFYI 48
+ K P +I S ++ + E H+ + Q FY
Sbjct: 417 VEKQPKESTISIP-SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY- 474
Query: 49 QFI-FHV----------LF---YL---FCSQKLEQTAISLKDEGNALFRLNQWSESLAKY 91
I H+ LF +L F QK+ + + G+ L L Q L Y
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ----LKFY 530
Query: 92 NEAL-RSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKA----ITLNPSY 146
+ + P+ Y A+ L K +++++ I L
Sbjct: 531 KPYICDNDPK---------YERLVNAILDF-----LPKIEENLICSKYTDLLRIALMAED 576
Query: 147 LKVYQRRARLYQQ 159
+++ + Q+
Sbjct: 577 EAIFEEAHKQVQR 589
Score = 32.5 bits (73), Expect = 0.13
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 18/92 (19%)
Query: 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGA 201
L +Y + +Q + + + L D Y +++ P LKL++
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA--L 144
Query: 202 TKLSPDVFLHPGQPQIQHNPETIHG----GKT 229
+L P + I G GKT
Sbjct: 145 LELRPAKNV------------LIDGVLGSGKT 164
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 43.9 bits (104), Expect = 3e-06
Identities = 10/102 (9%), Positives = 38/102 (37%), Gaps = 8/102 (7%)
Query: 81 LNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAI 140
L ++++ Y +A+ S + ++ Y + + +L + ++ + +
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAEC--YLGLGST------FRTLGEYRKAEAVLANGV 54
Query: 141 TLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182
P++ + A + + ++ + KI+ ++
Sbjct: 55 KQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96
Score = 42.0 bits (99), Expect = 2e-05
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 126 LEKPDQSILACSKAITLN---PSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182
L Q++ KAI + Y ++ + +A A ++ PN++
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 183 AYV 185
V
Sbjct: 63 LRV 65
Score = 35.8 bits (83), Expect = 0.003
Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 15/94 (15%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G+ L ++ ++ A ++ P + L +L + +Q +
Sbjct: 34 GSTFRTLGEYRKAEAVLANGVKQFPNH-----QALRVFYAMVLY------NLGRYEQGVE 82
Query: 135 ACSKAITLNPSY--LKVYQRRARLYQQSDKLDEA 166
K I ++ Y++ Y LDE
Sbjct: 83 LLLKIIAETSDDETIQSYKQAILFYADK--LDET 114
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 45.5 bits (107), Expect = 4e-06
Identities = 13/112 (11%), Positives = 35/112 (31%), Gaps = 9/112 (8%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
L +L++ + + + + A + + +A EKL +
Sbjct: 137 VQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKL---------QDAYY 187
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186
+ L + +A + + + A Q+ L+ D + + +
Sbjct: 188 IFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239
Score = 40.1 bits (93), Expect = 3e-04
Identities = 23/123 (18%), Positives = 51/123 (41%), Gaps = 7/123 (5%)
Query: 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASY 123
L++ S E A+ ++ S ++ + + R +SR+V N + L + Y
Sbjct: 54 LDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDRE--MSRSVDVTNTTFLLMAASIY 111
Query: 124 LSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
+ PD ++ + +L + V + + D+LD A + +K+ + D +
Sbjct: 112 FYDQNPDAALRTLHQGDSLECMAMTVQ-----ILLKLDRLDLARKELKKMQDQDEDATLT 166
Query: 184 YVA 186
+A
Sbjct: 167 QLA 169
Score = 39.0 bits (90), Expect = 7e-04
Identities = 9/106 (8%), Positives = 34/106 (32%), Gaps = 12/106 (11%)
Query: 76 NALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILA 135
+ + ++ + E C + + ++A +++ + + +
Sbjct: 174 SLAAGGEKLQDAYYIFQEMADKCSPT-----LLLLNGQAAC------HMAQGRWEAAEGV 222
Query: 136 CSKAITLNPSYLKVYQRRARLYQQSDKLDEALADY-QKILELDPNN 180
+A+ + + + L Q K E Y ++ + ++
Sbjct: 223 LQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 44.9 bits (106), Expect = 8e-06
Identities = 19/121 (15%), Positives = 43/121 (35%), Gaps = 12/121 (9%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
A + + G L L + E++ +A + + A + AL++ +
Sbjct: 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA------AMALDRAGKLMEPL 129
Query: 128 KPDQSILACSKAITL------NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181
+++ +A + ++ + +RL + K DEA A QK +
Sbjct: 130 DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME 189
Query: 182 D 182
+
Sbjct: 190 N 190
Score = 39.9 bits (93), Expect = 3e-04
Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 11/126 (8%)
Query: 58 LFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAAL 117
++ TA D L S+++ Y +A + +A +++ L
Sbjct: 105 MYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRL 164
Query: 118 EKLASYLSLEKPDQSILACSKAITLN------PSYLKVYQRRARLYQQSDKLDEALADYQ 171
+ +K D++ + K ++ P+ K + + A +
Sbjct: 165 -----LVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219
Query: 172 KILELD 177
+ +
Sbjct: 220 ESYSIP 225
Score = 36.0 bits (83), Expect = 0.006
Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 14/134 (10%)
Query: 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLAS 122
+ A A Q ++ Y + + + S+ A A A E+
Sbjct: 31 DYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHA---AK---AFEQAGM 84
Query: 123 -YLSLEKPDQSILACSKAITL-----NPSYL-KVYQRRARLYQQSDKLDEALADYQKILE 175
L++ +++ KA + P R +L + D L +A+ YQ+
Sbjct: 85 MLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLD-LSKAVHLYQQAAA 143
Query: 176 LDPNNRDAYVATKV 189
+ N A ++
Sbjct: 144 VFENEERLRQAAEL 157
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 1e-05
Identities = 40/188 (21%), Positives = 62/188 (32%), Gaps = 59/188 (31%)
Query: 12 KNPSFLYTIYF----SCFI----LFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQK 63
NP L TI+F I ++F E D ++F + H Y F S+K
Sbjct: 1667 NNPVNL-TIHFGGEKGKRIRENYSAMIF-ETIVDGKLKTEKIFK-EINEHSTSYTFRSEK 1723
Query: 64 --LEQTAISLKDEGN---ALFRLNQWSESLAKYNEALRSCPRSCSVSRAVF-------YA 111
L T AL + A + E L+S + + A F YA
Sbjct: 1724 GLLSATQ-------FTQPALTLM-----EKAAF-EDLKS--KGLIPADATFAGHSLGEYA 1768
Query: 112 NRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQ 171
AL LA +S+E + + V+ R Q + DE
Sbjct: 1769 ----ALASLADVMSIE--S--------LVEV------VFY-RGMTMQVAVPRDELGRSNY 1807
Query: 172 KILELDPN 179
++ ++P
Sbjct: 1808 GMIAINPG 1815
Score = 36.2 bits (83), Expect = 0.008
Identities = 37/226 (16%), Positives = 69/226 (30%), Gaps = 58/226 (25%)
Query: 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIF----HVLFYLFCS 61
Y +EL LY Y ++ L + R + +F ++L +L
Sbjct: 169 YFEELRD----LYQTYHV--LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 62 QK------LEQTAISLKDEGNALFRLNQW---SESLAKYNEALRSCPRSCSV-SRAV--- 108
L IS + +L + ++ L LRS + + S+ +
Sbjct: 223 SNTPDKDYLLSIPISCP--LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 109 -----------FYANRSAALEKL----------ASYLSLEKPDQSILACSKAITLN-PSY 146
F+ + A+ L SL SIL S PS
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP---PSILEDSLENNEGVPSP 337
Query: 147 -LKVYQR---RARLYQQSDKLDEALADYQKI-LELDPNNRDAYVAT 187
L + + ++ +K + L +++ + L N V +
Sbjct: 338 MLSI--SNLTQEQVQDYVNKTNSHLPAGKQVEISL-VNGAKNLVVS 380
Score = 29.6 bits (66), Expect = 1.1
Identities = 34/201 (16%), Positives = 60/201 (29%), Gaps = 79/201 (39%)
Query: 56 FYLFCSQKLEQTAISLKDE---------------GN----ALFRLNQWSES-LAKYNEAL 95
F + S +E + + D+ GN +L Q +++ L K E +
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 96 RSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRAR 155
++ + R A +K S L +A+ + A+
Sbjct: 124 KN-----------YITARIMAKR------PFDKKSNSALF--RAVG---------EGNAQ 155
Query: 156 LY-----Q--QSDKLDEALAD----YQKILE---------LDPNNRDAYVATKVSP---D 192
L Q D +E L D Y ++ L R A KV +
Sbjct: 156 LVAIFGGQGNTDDYFEE-LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 193 LK--LKEKNGATKLSPDV-FL 210
+ L+ + PD +L
Sbjct: 215 ILEWLENPSNT----PDKDYL 231
Score = 26.9 bits (59), Expect = 6.5
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 16/71 (22%)
Query: 87 SLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146
+ YN V+ A AL+ + + L+ K Q I I L S
Sbjct: 1842 EIVNYN-----VENQQYVA-----AGDLRALDTVTNVLNFIK-LQKI----DIIELQKS- 1885
Query: 147 LKVYQRRARLY 157
L + + L+
Sbjct: 1886 LSLEEVEGHLF 1896
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR,
tetratricopeptide repeat like, TPR-like, transport
protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Length = 158
Score = 41.7 bits (97), Expect = 4e-05
Identities = 18/123 (14%), Positives = 40/123 (32%), Gaps = 20/123 (16%)
Query: 73 DEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL----SLEK 128
D R+ + + +S P A L +L+ + + +
Sbjct: 7 DTETEFDRILLFEQIRQDAENTYKSNPLD-----ADNLTRWGGVLLELSQFHSISDAKQM 61
Query: 129 PDQSILACSKAITLNPSYLK-------VYQRRARLYQQSDK----LDEALADYQKILELD 177
++I +A+ ++P + Y A L + D A +Q+ ++
Sbjct: 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121
Query: 178 PNN 180
P+N
Sbjct: 122 PDN 124
Score = 27.0 bits (59), Expect = 4.3
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 10/65 (15%)
Query: 130 DQSILACSKAITLNPSYLKVYQRRARLYQQ----------SDKLDEALADYQKILELDPN 179
+Q NP R + + + EA+ +++ L +DP
Sbjct: 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 78
Query: 180 NRDAY 184
+A
Sbjct: 79 KDEAV 83
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 40.4 bits (95), Expect = 2e-04
Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 15/119 (12%)
Query: 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLAS-Y 123
E + + L EG L + ++ + A++ SA +L + Y
Sbjct: 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTED--------LKTLSAIYSQLGNAY 57
Query: 124 LSLEKPDQSILACSKAITL------NPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
L +++ +TL K + DEA+ Q+ L++
Sbjct: 58 FYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 116
Score = 28.8 bits (65), Expect = 1.4
Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 15/118 (12%)
Query: 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFY-ANRSAALEKLAS-YL 124
+ + GNA L ++ + Y + L ++R + A + + L + Y
Sbjct: 226 ERRAYSNLGNAYIFLGEFETASEYYKKTL-------LLARQLKDRAVEAQSCYSLGNTYT 278
Query: 125 SLEKPDQSI------LACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
L+ +++I LA ++ + + Y D+A+ +K LE+
Sbjct: 279 LLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336
Score = 27.3 bits (61), Expect = 4.6
Identities = 14/120 (11%), Positives = 44/120 (36%), Gaps = 19/120 (15%)
Query: 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSA---ALEKLAS- 122
+ + GN + L + +++ + + L +++ + +++A A L +
Sbjct: 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRL-------LIAKE--FGDKAAERRAYSNLGNA 236
Query: 123 YLSLEKPDQSI------LACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
Y+ L + + + L ++ + + Y ++A+ + K L +
Sbjct: 237 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 38.0 bits (89), Expect = 0.001
Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 15/117 (12%)
Query: 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLAS-YLS 125
+ + L EG L + ++ + A++ SA +L + Y
Sbjct: 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTED--------LKTLSAIYSQLGNAYFY 55
Query: 126 LEKPDQSI------LACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
L +++ L ++ I K + DEA+ Q+ L++
Sbjct: 56 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 112
Score = 29.1 bits (66), Expect = 1.2
Identities = 15/120 (12%), Positives = 43/120 (35%), Gaps = 19/120 (15%)
Query: 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSA---ALEKLAS- 122
+ + GN + L + +++ + + L +++ + +++A A L +
Sbjct: 182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRL-------LIAKE--FGDKAAERRAYSNLGNA 232
Query: 123 YLSLEKPDQSILACSKAITLN------PSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
Y+ L + + + K + L + Y ++A+ + K L +
Sbjct: 233 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292
Score = 28.0 bits (63), Expect = 2.6
Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 15/118 (12%)
Query: 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFY-ANRSAALEKLAS-YL 124
+ + GNA L ++ + Y + L ++R + A + + L + Y
Sbjct: 222 ERRAYSNLGNAYIFLGEFETASEYYKKTL-------LLARQLKDRAVEAQSCYSLGNTYT 274
Query: 125 SLEKPDQSILACSKAITLN------PSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
L+ +++I K + + + Y D+A+ +K LE+
Sbjct: 275 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 37.7 bits (88), Expect = 0.002
Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 15/119 (12%)
Query: 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLAS-Y 123
+ L EG L +A + A+++ SA +L + Y
Sbjct: 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTED--------LRTLSAIYSQLGNAY 96
Query: 124 LSLEKPDQSI------LACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
L ++++ L +K++ K + + DEA ++ L L
Sbjct: 97 FYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL 155
Score = 30.7 bits (70), Expect = 0.40
Identities = 15/119 (12%), Positives = 39/119 (32%), Gaps = 17/119 (14%)
Query: 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAA--LEKLAS-Y 123
+ + GN+ L Q+ ++ Y L +++ + A L + Y
Sbjct: 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTL-------ALAVEL-GEREVEAQSCYSLGNTY 313
Query: 124 LSLEKPDQSILACSKAITL------NPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
L + + +I ++ + + + + + AL ++ L+L
Sbjct: 314 TLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372
Score = 29.6 bits (67), Expect = 0.81
Identities = 15/121 (12%), Positives = 42/121 (34%), Gaps = 21/121 (17%)
Query: 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAV-FYANRSAALEKLAS-YL 124
+ + GN + L + ++ + E L ++R A A L + ++
Sbjct: 222 QGRACGNLGNTYYLLGDFQAAIEHHQERL-------RIAREFGDRAAERRANSNLGNSHI 274
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRR---------ARLYQQSDKLDEALADYQKILE 175
L + + + + + L +++ +R Y + + A+ + + L
Sbjct: 275 FLGQFEDAAEHYKRTLAL---AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331
Query: 176 L 176
+
Sbjct: 332 I 332
Score = 26.5 bits (59), Expect = 7.3
Identities = 20/142 (14%), Positives = 48/142 (33%), Gaps = 36/142 (25%)
Query: 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRS---AALE 118
+ L + GNA F L +++++ + L +++++ +R +
Sbjct: 80 EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT-------LAKSM--NDRLGEAKSSG 130
Query: 119 KLAS-YLSLEKPDQSILACSKAITLNPS-----------------------YLKVYQRRA 154
L + + + D++ + C + +TL +L
Sbjct: 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGK 190
Query: 155 RLYQQSDKLDEALADYQKILEL 176
+ L A+ YQ+ L+L
Sbjct: 191 FGDDVKEALTRAVEFYQENLKL 212
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.40A {Vibrio
parahaemolyticus} SCOP: e.61.1.1
Length = 273
Score = 34.6 bits (79), Expect = 0.016
Identities = 10/67 (14%), Positives = 23/67 (34%)
Query: 117 LEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
+ + + LS + Q++ +AI +P + L + A + ++L
Sbjct: 1 MTQWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60
Query: 177 DPNNRDA 183
P
Sbjct: 61 FPEYLPG 67
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.016
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 116 ALEKLASYLSLEKPDQSILACSKAITLNPS 145
AL+KL + L L D + A+ + +
Sbjct: 21 ALKKLQASLKLYADDS-----APALAIKAT 45
Score = 27.6 bits (60), Expect = 2.2
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 19/45 (42%)
Query: 158 QQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGAT 202
Q KL +L Y ++ +P L +K AT
Sbjct: 20 QALKKLQASLKLYA------DDS---------APALAIK----AT 45
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 34.8 bits (80), Expect = 0.019
Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 4/112 (3%)
Query: 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL 124
+ L L + Q ++ E L FY L+ +
Sbjct: 258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHK----FYKELFLFLQAVYKET 313
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
E+ +L+ + L+ + A +++ S ++A A Y+K+L+
Sbjct: 314 VDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365
Score = 30.6 bits (69), Expect = 0.46
Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 14/127 (11%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKL--ASYLS 125
A A + + Q S+ +AL Y+ R+ + +Y
Sbjct: 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIY------QNHPLYSIRTIQSLFVIAGNYDD 194
Query: 126 LEKPDQSILACSKAITL------NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179
+ D+++ A+ L + A Y +S A+ +QK ++
Sbjct: 195 FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254
Query: 180 NRDAYVA 186
+
Sbjct: 255 KVPDLLP 261
Score = 29.8 bits (67), Expect = 0.71
Identities = 15/130 (11%), Positives = 35/130 (26%), Gaps = 12/130 (9%)
Query: 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPR-SCSVSRAVFYANRSAALEKLASY 123
+T SL + ++L AL A+ N + + Y
Sbjct: 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANS------Y 232
Query: 124 LSLEKPDQSILACSKAITLN-----PSYLKVYQRRARLYQQSDKLDEALADYQKILELDP 178
++ KA ++ KV + ++ + +A ++ L+
Sbjct: 233 DRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT 292
Query: 179 NNRDAYVATK 188
+
Sbjct: 293 ARSHKFYKEL 302
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 33.8 bits (77), Expect = 0.021
Identities = 10/74 (13%), Positives = 24/74 (32%)
Query: 115 AALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKIL 174
L++++ L + Q++ S V +A ++ + + A I
Sbjct: 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP 67
Query: 175 ELDPNNRDAYVATK 188
+N + K
Sbjct: 68 LEYQDNSYKSLIAK 81
Score = 33.4 bits (76), Expect = 0.030
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 143 NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186
N S + ++ Q + +AL Q + + + D +A
Sbjct: 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLA 45
Score = 26.5 bits (58), Expect = 6.4
Identities = 19/133 (14%), Positives = 44/133 (33%), Gaps = 23/133 (17%)
Query: 73 DEGNALFRLNQWSESLAKYNEALRSCPRS----CSVSRAVFYANRSAALEKLASYLSLEK 128
+ + L + + +++L + + + + ++L + + LE
Sbjct: 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY 70
Query: 129 PDQSILACSKAITL-------------------NPSYLKVYQRRARLYQQSDKLDEALAD 169
D S + + L NP ++ A Y Q + +EAL
Sbjct: 71 QDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALEL 130
Query: 170 YQKILELDPNNRD 182
IL+++ +D
Sbjct: 131 LWNILKVNLGAQD 143
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 34.2 bits (78), Expect = 0.025
Identities = 14/102 (13%), Positives = 25/102 (24%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
E+ AL P SR V + L Q
Sbjct: 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 80
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
++ + L +++ + L A +K +L
Sbjct: 81 QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 122
Score = 29.2 bits (65), Expect = 1.1
Identities = 13/119 (10%), Positives = 29/119 (24%), Gaps = 14/119 (11%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPR---SCSVSRAVFYANRSAALEKLAS 122
SL + LF + +A + R+
Sbjct: 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL------ 144
Query: 123 YLSLEKPDQSILACSKAITLN-----PSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
+ + D++ + I + L+ + LD A + ++ L
Sbjct: 145 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 203
Score = 28.8 bits (64), Expect = 1.7
Identities = 8/35 (22%), Positives = 11/35 (31%)
Query: 153 RARLYQQSDKLDEALADYQKILELDPNNRDAYVAT 187
RA++ DEA + LE P
Sbjct: 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIV 54
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 33.8 bits (77), Expect = 0.036
Identities = 16/134 (11%), Positives = 37/134 (27%), Gaps = 14/134 (10%)
Query: 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLAS 122
++ + + ++ A++ R + +L
Sbjct: 72 NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG------ANFKFELGE 125
Query: 123 YLSLE--KPDQSILACSKAITL------NPSYLKVYQRRARLYQQSDKLDEALADYQKIL 174
L + ++I A K + + A L + EA Y K++
Sbjct: 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLI 185
Query: 175 ELDPNNRDAYVATK 188
+ NR + + K
Sbjct: 186 KSSMGNRLSQWSLK 199
Score = 31.5 bits (71), Expect = 0.17
Identities = 15/113 (13%), Positives = 41/113 (36%), Gaps = 15/113 (13%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
+ Q+ E+ Y++ ++S + R ++ + L+K L+ +
Sbjct: 165 ADLKALDGQYIEASDIYSKLIKSSMGN----RLSQWSLKDYFLKKGLCQLAATDAVAAAR 220
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQ---------SDKLDEALADYQKILELDP 178
+ + +P++ R + + S++L E ++ + LD
Sbjct: 221 TLQEGQSEDPNFAD--SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271
Score = 28.4 bits (63), Expect = 1.8
Identities = 16/146 (10%), Positives = 39/146 (26%), Gaps = 14/146 (9%)
Query: 52 FHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYA 111
F LF S K E+ A + + + + +A ++ + A
Sbjct: 21 FMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEA---- 76
Query: 112 NRSAALEKLAS-YLSLEKPDQSILACSKAITLNPSYL------KVYQRRARLY-QQSDKL 163
+ + S ++ + AI + +
Sbjct: 77 --GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDY 134
Query: 164 DEALADYQKILELDPNNRDAYVATKV 189
+A+ Y+ E ++ ++ K
Sbjct: 135 AKAIDCYELAGEWYAQDQSVALSNKC 160
Score = 26.5 bits (58), Expect = 7.8
Identities = 19/125 (15%), Positives = 40/125 (32%), Gaps = 13/125 (10%)
Query: 63 KLEQTAISLKDEGNAL-FRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLA 121
+ + A + G L L+ +++++ Y A + SV+ + + A L
Sbjct: 112 QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADL---- 167
Query: 122 SYLSLEKPDQSILACSKAI-------TLNPSYLKVYQRRARLYQQSDKLDEALADYQKIL 174
+ ++ SK I S + ++ + A Q+
Sbjct: 168 -KALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226
Query: 175 ELDPN 179
DPN
Sbjct: 227 SEDPN 231
>3pbt_A Penicillin-binding protein 3; PBP3, hydrolase-antibiotic complex;
HET: UE1; 1.64A {Pseudomonas aeruginosa} PDB: 3pbn_A*
3pbo_A* 3pbr_A* 3pbs_A* 3pbq_A* 3oc2_A 3ocl_A* 3ocn_A*
Length = 538
Score = 33.4 bits (77), Expect = 0.063
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 133 ILACS---KAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKV 189
LA S + NP L + R Q + L + + +E + Y+ +
Sbjct: 31 PLAVSTPVTTLWANPKELMTAKERWP--QLAAALGQDTKLFADRIEQNAEREFIYLVRGL 88
Query: 190 SPDL 193
+P+
Sbjct: 89 TPEQ 92
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 31.9 bits (73), Expect = 0.12
Identities = 15/119 (12%), Positives = 34/119 (28%), Gaps = 16/119 (13%)
Query: 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVF--YANRSAALEKLAS-Y 123
+L G W + + E + ++ SA ++A+
Sbjct: 65 EHRALHQVGMVERMAGNWDAARRCFLEERE-------LLASLPEDPLAASANAYEVATVA 117
Query: 124 LSLEKPDQSILACSKAITL------NPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
L + K++ + ++ L QQ L EA + + ++
Sbjct: 118 LHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176
Score = 29.2 bits (66), Expect = 0.75
Identities = 13/119 (10%), Positives = 33/119 (27%), Gaps = 16/119 (13%)
Query: 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAV-FYANRSAALEKLAS-YL 124
+ + G ++++ E+ A + + ++ + AL ++
Sbjct: 25 ASGARFMLGYVYAFMDRFDEARASFQALQQ-------QAQKSGDHTAEHRALHQVGMVER 77
Query: 125 SLEKPDQSILACSKAITL-------NPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
D + + L + A + L A +Y+K L
Sbjct: 78 MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 31.3 bits (71), Expect = 0.23
Identities = 14/115 (12%), Positives = 38/115 (33%), Gaps = 4/115 (3%)
Query: 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLA 121
L + ++L + ++ +++ + ++ V Y + L+ L
Sbjct: 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVI----YLSEFEFLKSLY 313
Query: 122 SYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
E+ Q ++ L A+ Y + +A A + K+ ++
Sbjct: 314 LSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368
Score = 29.0 bits (65), Expect = 1.1
Identities = 11/116 (9%), Positives = 35/116 (30%), Gaps = 12/116 (10%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLA-SYLSL 126
A + + + Q S+ +A + A ++L L
Sbjct: 143 AEFFFKMSESYYYMKQTYFSMDYARQAY-----EIYKEHEAYNIRLLQCHSLFATNFLDL 197
Query: 127 EKPDQSILACSKAITL------NPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
++ + +I KA ++ + + ++A+ +++ + +
Sbjct: 198 KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253
Score = 27.1 bits (60), Expect = 4.9
Identities = 15/118 (12%), Positives = 37/118 (31%), Gaps = 13/118 (11%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPR-SCSVSRAVFYANRSAALEKLASYL 124
+ L Q+ ++++ + +A N
Sbjct: 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLC------KN 235
Query: 125 SLEKPDQSILACSKAITLN------PSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
S + + +I +AI + PS + Y +++ + K+D+A + K +
Sbjct: 236 SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR
domain, ATPase, protein secret protein transport; 2.00A
{Mycobacterium tuberculosis}
Length = 282
Score = 30.1 bits (67), Expect = 0.53
Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 12/112 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS-LEKPDQSI 133
+W++ + + A + + + + V + +A L L + + S
Sbjct: 142 AVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP 201
Query: 134 L--ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
AC++AI A + A+A + + P + A
Sbjct: 202 AGEACARAIAWY---------LAMARRSQGNESAAVALLEWLQTTHPEPKVA 244
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 29.8 bits (68), Expect = 0.61
Identities = 11/120 (9%), Positives = 27/120 (22%), Gaps = 16/120 (13%)
Query: 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRS---AALEKLAS- 122
A + + + + ++ ++ Y E L F +
Sbjct: 194 VAKTKNNLASCYLKQGKFKQAETLYKEILTRA------HEREFGSVDDENKPIWMHAEER 247
Query: 123 YLSLEKPDQSILACSKAITLN------PSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
K P+ + LY++ K + A + +
Sbjct: 248 EECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307
Score = 28.7 bits (65), Expect = 1.6
Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 19/122 (15%)
Query: 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRS---AALEKLAS- 122
A L N++ ++ N+AL ++ + A L LA
Sbjct: 68 VATMLNILALVYRDQNKYKDAANLLNDAL-------AIREKTLGKDHPAVAATLNNLAVL 120
Query: 123 YLSLEKPDQSILACSKAITL--------NPSYLKVYQRRARLYQQSDKLDEALADYQKIL 174
Y K ++ C +A+ + +P K A L Q K +E YQ+ L
Sbjct: 121 YGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180
Query: 175 EL 176
E+
Sbjct: 181 EI 182
Score = 27.5 bits (62), Expect = 3.8
Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 19/121 (15%)
Query: 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRS---AALEKLAS- 122
A +L + + ++ E+ AL + V + L LA
Sbjct: 110 VAATLNNLAVLYGKRGKYKEAEPLCKRAL-------EIREKVLGKDHPDVAKQLNNLALL 162
Query: 123 YLSLEKPDQSILACSKAITLN--------PSYLKVYQRRARLYQQSDKLDEALADYQKIL 174
+ K ++ +A+ + P+ K A Y + K +A Y++IL
Sbjct: 163 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222
Query: 175 E 175
Sbjct: 223 T 223
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S
cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4
PDB: 1dfd_A 1fxr_A
Length = 64
Score = 27.4 bits (61), Expect = 0.85
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 82 NQWSESLAKYNEALRSCPRSC 102
+ S + EA+ +CP C
Sbjct: 38 DVEGASQEEVEEAMDTCPVQC 58
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 28.1 bits (63), Expect = 1.2
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
Query: 122 SYLSLEKPDQSILACSKAITLNPSYLKV---YQRRARLYQQSDKLDEALADYQKILELDP 178
SY + + ++ P++ K + K EA Q++ P
Sbjct: 48 SYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107
Query: 179 NNRDAYVATKVSPDLKLKEK 198
+ A VA + ++L ++
Sbjct: 108 GSDAARVAQERLQSIRLGQQ 127
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 1.8
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 16/56 (28%)
Query: 65 EQTA-ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEK 119
EQ + D + + +W E K E + +S +EK
Sbjct: 93 EQRKRLQELDAASKV-MEQEWREKAKKDLEE--------------WNQRQSEQVEK 133
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane
protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Length = 225
Score = 28.0 bits (63), Expect = 2.0
Identities = 17/153 (11%), Positives = 44/153 (28%), Gaps = 36/153 (23%)
Query: 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL 124
+ + + W +++ + P Y+ + L+ + +Y
Sbjct: 1 DNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP-------YSQQ-VQLDLIYAYY 52
Query: 125 SLEKPDQSILACSKAITLNPS--------YLK--VYQRR-----ARLYQQSD------KL 163
+ A + I LNP+ Y++ + +
Sbjct: 53 KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQA 112
Query: 164 DEALADYQKILELDPNNRDAYVATKVSPDLKLK 196
A +D+ K++ PN ++ + D +
Sbjct: 113 RAAFSDFSKLVRGYPN-------SQYTTDATKR 138
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 28.3 bits (64), Expect = 2.2
Identities = 14/119 (11%), Positives = 29/119 (24%), Gaps = 16/119 (13%)
Query: 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVF---YANRSAALEKLAS- 122
A + + + + ++ ++ Y E L F +
Sbjct: 168 VAKTKNNLASCYLKQGKYQDAETLYKEILTRA------HEKEFGSVNGDNKPIWMHAEER 221
Query: 123 YLSLEKPDQSILACSKAITLN------PSYLKVYQRRARLYQQSDKLDEALADYQKILE 175
S +K S P+ + LY++ KL+ A
Sbjct: 222 EESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280
Score = 26.7 bits (60), Expect = 5.7
Identities = 25/121 (20%), Positives = 41/121 (33%), Gaps = 19/121 (15%)
Query: 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRS---AALEKLAS- 122
A L N++ E+ N+AL ++ + A L LA
Sbjct: 42 VATMLNILALVYRDQNKYKEAAHLLNDAL-------AIREKTLGKDHPAVAATLNNLAVL 94
Query: 123 YLSLEKPDQSILACSKAITL--------NPSYLKVYQRRARLYQQSDKLDEALADYQKIL 174
Y K ++ C +A+ + +P K A L Q K +E Y++ L
Sbjct: 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154
Query: 175 E 175
E
Sbjct: 155 E 155
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase,
transferase-transferase inhibitor; HET: SUC 3CX FPP 778;
2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A*
3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Length = 349
Score = 27.9 bits (61), Expect = 2.6
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 120 LASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK-LDEALADYQKILELDP 178
A EK ++++ + +NP++ V+Q R L +K L++ L + +
Sbjct: 61 RAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL 120
Query: 179 NN 180
+
Sbjct: 121 KS 122
>3ue3_A Septum formation, penicillin binding protein 3, peptidoglycan
synthetase; transpeptidase, transferase; 2.30A
{Acinetobacter}
Length = 554
Score = 27.2 bits (61), Expect = 5.4
Identities = 7/91 (7%), Positives = 21/91 (23%), Gaps = 6/91 (6%)
Query: 103 SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK 162
S + + + + + + P+ A +
Sbjct: 35 STPIMKIVIDPRDYWDAKTQFDEITAELKKDPNNRRLRRQLPNKNLNLDELADV------ 88
Query: 163 LDEALADYQKILELDPNNRDAYVATKVSPDL 193
+ +K + +R + +V P
Sbjct: 89 VGMDRKTLKKHMTDRARSRYLVLQREVPPQQ 119
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum,
metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB:
1tjc_A
Length = 104
Score = 25.7 bits (56), Expect = 6.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 157 YQQSDKLDEALADYQKILELDPNNRDA 183
Q LD+AL +K+LELDP ++ A
Sbjct: 56 VYQQGDLDKALLLTKKLLELDPEHQRA 82
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 26.4 bits (58), Expect = 7.6
Identities = 17/119 (14%), Positives = 31/119 (26%), Gaps = 29/119 (24%)
Query: 73 DEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQS 132
G E A + SA E L +L PD +
Sbjct: 72 GIGPVDRAALGDPEHSE-----------YEKKVIAELHRLESAQAEFLMDHLGQAGPDDT 120
Query: 133 IL------------------ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKI 173
++ + + +TL+ + RRAR + D + + +
Sbjct: 121 LVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT 179
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 26.7 bits (58), Expect = 7.7
Identities = 19/191 (9%), Positives = 55/191 (28%), Gaps = 13/191 (6%)
Query: 1 MKPLPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFC 60
++ + + ++ + IY ++ C Q + Y + + +
Sbjct: 49 LQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY- 107
Query: 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKL 120
+ +Q + + + + + + L V + ++ N A +
Sbjct: 108 HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI--- 164
Query: 121 ASYLSLEKPDQSILACSKAITLNPSY-------LKVYQRRARLYQQSDKLDEALADYQKI 173
Y + I + + + +KV A+ + +E+L K
Sbjct: 165 --YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222
Query: 174 LELDPNNRDAY 184
+E+
Sbjct: 223 IEISCRINSMA 233
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces
cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A*
1how_A 2jd5_A
Length = 373
Score = 26.6 bits (59), Expect = 7.8
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 137 SKAITLNPSYLKVYQRR---ARLYQQSDKLDEALADY-QKILELDPNNR 181
S+ + N S LK + Y+ S + ++D+ +L+LDP R
Sbjct: 277 SRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKR 325
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics,
protein structure initiative; 1.97A {Xylella fastidiosa
TEMECULA1} PDB: 3lki_A*
Length = 338
Score = 26.4 bits (59), Expect = 8.1
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 81 LNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAAL 117
L +++ + C S+ + +A AL
Sbjct: 269 LYTFAQQFDDAAALIDFCHDPESIVSTLRFAAAVGAL 305
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.397
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,410,926
Number of extensions: 188526
Number of successful extensions: 1220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 746
Number of HSP's successfully gapped: 346
Length of query: 229
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 139
Effective length of database: 4,188,903
Effective search space: 582257517
Effective search space used: 582257517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)