BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13017
(74 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VMF|A Chain A, Crystal Structure Of A Ybjq-Like Fold Protein Of Unknown
Function (Bh3498) From Bacillus Halodurans At 1.46 A
Resolution
pdb|1VMF|B Chain B, Crystal Structure Of A Ybjq-Like Fold Protein Of Unknown
Function (Bh3498) From Bacillus Halodurans At 1.46 A
Resolution
pdb|1VMF|C Chain C, Crystal Structure Of A Ybjq-Like Fold Protein Of Unknown
Function (Bh3498) From Bacillus Halodurans At 1.46 A
Resolution
Length = 145
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 4 PAHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTL 51
AH+K +G + T+ IS+G+L LG WQG++ CE +RK VV L
Sbjct: 95 AAHLKTSTVGHAQTLIISEGRLVLGTWQGVYFCEFDGPRTNRKFVVKL 142
>pdb|1VMH|A Chain A, Crystal Structure Of An Uncharacterized Conserved Protein
YjbqUPF0047 Family, Ortholog Yugu B.Subtilis (Ca_c0907)
From Clostridium Acetobutylicum At 1.31 A Resolution
Length = 144
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 5 AHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTL 51
AH+KA +GSS I I +GKL LG WQGI+ E D RK+ V +
Sbjct: 98 AHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEF-DGPRDRKVFVKI 143
>pdb|1XBF|A Chain A, X-Ray Structure Northeast Structural Genomics Consortium
Target Car10 From C. Acetobutylicum
pdb|1XBF|B Chain B, X-Ray Structure Northeast Structural Genomics Consortium
Target Car10 From C. Acetobutylicum
pdb|1XBF|C Chain C, X-Ray Structure Northeast Structural Genomics Consortium
Target Car10 From C. Acetobutylicum
Length = 140
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 5 AHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTL 51
AH+KA GSS I I +GKL LG WQGI+ E D RK+ V +
Sbjct: 86 AHIKASLXGSSQQIIIENGKLKLGTWQGIYFTEF-DGPRDRKVFVKI 131
>pdb|1VPH|A Chain A, Crystal Structure Of A Ybjq-Like Protein Of Unknown
Function (Sso2532) From Sulfolobus Solfataricus P2 At
1.76 A Resolution
pdb|1VPH|B Chain B, Crystal Structure Of A Ybjq-Like Protein Of Unknown
Function (Sso2532) From Sulfolobus Solfataricus P2 At
1.76 A Resolution
pdb|1VPH|C Chain C, Crystal Structure Of A Ybjq-Like Protein Of Unknown
Function (Sso2532) From Sulfolobus Solfataricus P2 At
1.76 A Resolution
pdb|1VPH|D Chain D, Crystal Structure Of A Ybjq-Like Protein Of Unknown
Function (Sso2532) From Sulfolobus Solfataricus P2 At
1.76 A Resolution
pdb|1VPH|E Chain E, Crystal Structure Of A Ybjq-Like Protein Of Unknown
Function (Sso2532) From Sulfolobus Solfataricus P2 At
1.76 A Resolution
pdb|1VPH|F Chain F, Crystal Structure Of A Ybjq-Like Protein Of Unknown
Function (Sso2532) From Sulfolobus Solfataricus P2 At
1.76 A Resolution
Length = 149
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 5 AHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTLNG 53
AH+ A FLG+ P+ +GKL G WQ I+L E R + V + G
Sbjct: 100 AHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHITVEILG 148
>pdb|1VE0|A Chain A, Crystal Structure Of Uncharacterized Protein St2072 From
Sulfolobus Tokodaii
Length = 134
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 5 AHVKACFLGSSLTIPISDGKLNLGMWQGIWLCE 37
AHV + +G+S +PI +GKL+LG WQ I L E
Sbjct: 86 AHVISAIIGNSRVVPIIEGKLDLGTWQRIILLE 118
>pdb|2P6C|A Chain A, Crystal Structure Of Hypothetical Protein Aq_2013 From
Aquifex Aeolicus Vf5.
pdb|2P6C|B Chain B, Crystal Structure Of Hypothetical Protein Aq_2013 From
Aquifex Aeolicus Vf5
Length = 137
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 5 AHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLV 48
AH+K + +PI++GKL+LG WQ I+ E Q R ++
Sbjct: 89 AHLKNLLTHLQVVLPITNGKLDLGPWQEIFYAEFDGQRPKRVVI 132
>pdb|2P6H|A Chain A, Crystal Structure Of Hypothetical Protein Ape1520 From
Aeropyrum Pernix K1
pdb|2P6H|B Chain B, Crystal Structure Of Hypothetical Protein Ape1520 From
Aeropyrum Pernix K1
Length = 134
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 5 AHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTL 51
AH+ +G S IP+ G+L+LG WQ I E G R+ V L
Sbjct: 86 AHLGNTIIGDSRVIPVVGGRLSLGTWQRILFVE---MDGPRERTVNL 129
>pdb|1VMJ|A Chain A, Crystal Structure Of A Putative Thiamin Phosphate Synthase
(Tm0723) From Thermotoga Maritima Msb8 At 1.52 A
Resolution
Length = 151
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 5 AHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLV 48
AH+K +G + I I+D K++LG W+ ++ E R LV
Sbjct: 103 AHLKRTIMGREVVIAITDRKMDLGPWEQVFYGEFDGMRPKRVLV 146
>pdb|2CU5|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1486 From Thermus Thermophilus Hb8
pdb|2CU5|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1486 From Thermus Thermophilus Hb8
pdb|2CU5|C Chain C, Crystal Structure Of The Conserved Hypothetical Protein
Tt1486 From Thermus Thermophilus Hb8
Length = 129
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 5 AHVKACFLGSSLTIPISDGKLNLGMWQGIWLCE 37
AH+K+ G L + G+L LG WQ ++L E
Sbjct: 83 AHLKSLLTGVHLLLLAEKGRLRLGRWQQVFLAE 115
>pdb|1FEP|A Chain A, Ferric Enterobactin Receptor
Length = 724
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 28 GMWQGIWLC-----EHRDQAGSRKLVVTLNGVLGD 57
G W G W EH+++ +++ +L G LGD
Sbjct: 151 GEWHGSWDAYFNAPEHKEEGATKRTNFSLTGPLGD 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,242,948
Number of Sequences: 62578
Number of extensions: 72153
Number of successful extensions: 132
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 123
Number of HSP's gapped (non-prelim): 10
length of query: 74
length of database: 14,973,337
effective HSP length: 44
effective length of query: 30
effective length of database: 12,219,905
effective search space: 366597150
effective search space used: 366597150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)