BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13017
(74 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0A2L1|YJBQ_SALTY UPF0047 protein YjbQ OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=yjbQ PE=3 SV=1
Length = 138
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 2 ELPAHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTLNG 53
++P+H+K+ LG SL +P+ G+L LG WQGIWL EHR G RK++ TL G
Sbjct: 86 DMPSHIKSSVLGVSLLLPVRQGRLQLGTWQGIWLGEHRIHGGPRKIIATLQG 137
>sp|P0A2L2|YJBQ_SALTI UPF0047 protein YjbQ OS=Salmonella typhi GN=yjbQ PE=3 SV=1
Length = 138
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 2 ELPAHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTLNG 53
++P+H+K+ LG SL +P+ G+L LG WQGIWL EHR G RK++ TL G
Sbjct: 86 DMPSHIKSSVLGVSLLLPVRQGRLQLGTWQGIWLGEHRIHGGPRKIIATLQG 137
>sp|P0AF48|YJBQ_ECOLI UPF0047 protein YjbQ OS=Escherichia coli (strain K12) GN=yjbQ PE=3
SV=1
Length = 138
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 38/52 (73%)
Query: 2 ELPAHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTLNG 53
++P+H+K+ LG+SL +P+ G++ G WQGIWL EHR GSR+++ TL G
Sbjct: 86 DMPSHIKSSMLGTSLVLPVHKGRIQTGTWQGIWLGEHRIHGGSRRIIATLQG 137
>sp|P0AF49|YJBQ_ECO57 UPF0047 protein YjbQ OS=Escherichia coli O157:H7 GN=yjbQ PE=3 SV=1
Length = 138
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 38/52 (73%)
Query: 2 ELPAHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTLNG 53
++P+H+K+ LG+SL +P+ G++ G WQGIWL EHR GSR+++ TL G
Sbjct: 86 DMPSHIKSSMLGTSLVLPVHKGRIQTGTWQGIWLGEHRIHGGSRRIIATLQG 137
>sp|O14155|YE72_SCHPO UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC4A8.02c PE=3 SV=1
Length = 142
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 39/53 (73%)
Query: 2 ELPAHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTLNGV 54
++PAHVK+ +G SLT+PI++GKL+LG WQ I L E R Q SR +V T+ G+
Sbjct: 87 DMPAHVKSSLIGPSLTVPITNGKLSLGTWQDIQLAEFRRQPHSRTIVCTIIGL 139
>sp|P74125|Y1880_SYNY3 UPF0047 protein sll1880 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=sll1880 PE=3 SV=1
Length = 147
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 37/52 (71%)
Query: 2 ELPAHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTLNG 53
++PAH+++ +S IPI +G+L LG WQG++L EHR + R+++V ++G
Sbjct: 94 DMPAHIRSALTKTSEHIPIVNGRLGLGTWQGVFLWEHRQRPHQREVIVHVSG 145
>sp|O28229|Y2050_ARCFU UPF0047 protein AF_2050 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_2050 PE=3 SV=1
Length = 126
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 5 AHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVV 49
AH+KA LG+S+ +P+ GKL LG WQ I E D +R+++V
Sbjct: 80 AHLKATLLGNSVVVPVESGKLALGTWQRILFLEF-DGPRTRRVIV 123
>sp|O26865|Y771_METTH UPF0047 protein MTH_771 OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=MTH_771 PE=3 SV=1
Length = 143
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 5 AHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTLNG 53
+H++A LG S T+P+ +G ++LG WQ I+ E D +R++ V++ G
Sbjct: 94 SHLRAVLLGGSQTVPVINGSMDLGTWQSIFFAE-LDGPRNRRIRVSVAG 141
>sp|Q58481|Y1081_METJA UPF0047 protein MJ1081 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ1081 PE=3 SV=1
Length = 138
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 5 AHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTLNG 53
AH+K+ +G S TI I DGK LG WQGI+ E D R+ V + G
Sbjct: 89 AHIKSSLVGCSQTIIIKDGKPLLGTWQGIFFAEF-DGPRRREFYVKIIG 136
>sp|O05243|YUGU_BACSU UPF0047 protein YugU OS=Bacillus subtilis (strain 168) GN=yugU PE=3
SV=2
Length = 132
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 5 AHVKACFLGSSLTIPISDGKLNLGMWQGIWLCE 37
AH+K+ +G+S + + +G+L LG WQGI+ CE
Sbjct: 85 AHMKSSTVGASQHVIVENGRLILGTWQGIYFCE 117
>sp|A3QK15|AACS_DANRE Acetoacetyl-CoA synthetase OS=Danio rerio GN=aacs PE=2 SV=1
Length = 673
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 9 ACFLGSSLTIPISDGKL---NLGMWQGIWLCE 37
+CF+G ++T+P+ G++ NLGM W CE
Sbjct: 444 SCFMGQNMTVPVYRGEIQARNLGMAVESWSCE 475
>sp|P67122|Y2586_MYCBO UPF0047 protein Mb2586c OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=Mb2586c PE=3 SV=1
Length = 129
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 6 HVKACFLGSSLTIPISDGKLNLGMWQGIWLCE 37
H+ F+ S+T+P+S G+ LG WQ I L +
Sbjct: 81 HLLPAFVAPSVTVPVSGGQPLLGTWQSIVLVD 112
>sp|P67121|Y2556_MYCTU UPF0047 protein Rv2556c/MT2633 OS=Mycobacterium tuberculosis
GN=Rv2556c PE=3 SV=1
Length = 129
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 6 HVKACFLGSSLTIPISDGKLNLGMWQGIWLCE 37
H+ F+ S+T+P+S G+ LG WQ I L +
Sbjct: 81 HLLPAFVAPSVTVPVSGGQPLLGTWQSIVLVD 112
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,464,647
Number of Sequences: 539616
Number of extensions: 921893
Number of successful extensions: 1835
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1823
Number of HSP's gapped (non-prelim): 14
length of query: 74
length of database: 191,569,459
effective HSP length: 45
effective length of query: 29
effective length of database: 167,286,739
effective search space: 4851315431
effective search space used: 4851315431
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)