Query psy13017
Match_columns 74
No_of_seqs 101 out of 1003
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 17:15:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13017.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13017hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00149 TIGR00149_YbjQ secon 99.9 2E-27 4.3E-32 161.5 6.7 52 2-54 81-132 (132)
2 PF01894 UPF0047: Uncharacteri 99.9 6.1E-27 1.3E-31 156.5 6.4 50 2-52 69-118 (118)
3 COG0432 Uncharacterized conser 99.9 2E-26 4.3E-31 158.7 6.3 52 2-53 86-137 (137)
4 KOG3267|consensus 99.8 1.4E-21 2.9E-26 133.4 3.8 52 2-53 86-137 (138)
5 cd07999 GH7_CBH_EG Glycosyl hy 66.5 7.1 0.00015 31.3 3.2 36 10-45 114-150 (386)
6 PF15585 Imm46: Immunity prote 60.6 14 0.0003 25.5 3.4 48 23-70 78-127 (129)
7 COG3292 Predicted periplasmic 53.2 6.6 0.00014 33.4 1.0 18 22-39 216-233 (671)
8 PF03460 NIR_SIR_ferr: Nitrite 45.4 16 0.00036 20.9 1.6 18 22-39 38-55 (69)
9 COG0077 PheA Prephenate dehydr 44.6 31 0.00066 26.4 3.3 29 26-54 231-271 (279)
10 cd04904 ACT_AAAH ACT domain of 44.3 16 0.00034 21.6 1.4 13 28-40 39-51 (74)
11 PF07762 DUF1618: Protein of u 42.3 25 0.00054 22.5 2.3 11 29-39 4-14 (131)
12 PF11721 Malectin: Di-glucose 39.9 49 0.0011 22.6 3.5 37 15-55 70-114 (174)
13 cd04931 ACT_PAH ACT domain of 39.8 18 0.00039 22.8 1.3 13 28-40 53-65 (90)
14 PF00840 Glyco_hydro_7: Glycos 39.0 28 0.00061 28.4 2.5 35 10-44 120-155 (433)
15 TIGR03500 FliO_TIGR flagellar 39.0 61 0.0013 18.8 3.4 25 23-51 35-59 (69)
16 PF11743 DUF3301: Protein of u 36.4 53 0.0011 20.9 3.0 31 22-55 57-88 (97)
17 PRK11899 prephenate dehydratas 33.3 18 0.00039 27.2 0.6 27 28-54 233-271 (279)
18 PF04347 FliO: Flagellar biosy 33.0 85 0.0018 18.6 3.4 25 23-51 22-46 (84)
19 PF10055 DUF2292: Uncharacteri 31.8 47 0.001 18.4 2.0 13 14-26 16-28 (38)
20 COG4741 Predicted secreted end 30.7 75 0.0016 23.0 3.3 32 10-42 110-141 (175)
21 PF14215 bHLH-MYC_N: bHLH-MYC 29.7 45 0.00097 23.0 2.0 21 14-34 130-150 (163)
22 smart00036 CNH Domain found in 28.2 63 0.0014 23.9 2.7 25 15-39 4-30 (302)
23 PRK11898 prephenate dehydratas 28.1 53 0.0011 24.5 2.3 15 28-42 236-250 (283)
24 COG3443 Predicted periplasmic 26.6 27 0.0006 25.6 0.5 10 27-36 36-45 (193)
25 PF14438 SM-ATX: Ataxin 2 SM d 26.6 58 0.0013 19.3 1.9 43 5-52 4-46 (77)
26 PF00780 CNH: CNH domain; Int 25.2 81 0.0018 21.8 2.7 19 21-39 6-24 (275)
27 cd04930 ACT_TH ACT domain of t 22.7 56 0.0012 21.4 1.4 13 28-40 80-92 (115)
28 PF13382 Adenine_deam_C: Adeni 22.6 2.6E+02 0.0056 19.7 4.8 37 16-52 10-47 (171)
29 cd03702 IF2_mtIF2_II This fami 21.4 94 0.002 19.7 2.2 18 12-29 14-31 (95)
30 PF08845 SymE_toxin: Toxin Sym 21.4 97 0.0021 18.2 2.1 16 12-27 40-55 (57)
31 cd04929 ACT_TPH ACT domain of 21.4 66 0.0014 19.3 1.4 12 28-39 39-50 (74)
32 PRK05892 nucleoside diphosphat 21.2 2.1E+02 0.0046 19.6 4.1 48 16-69 74-125 (158)
33 PF13570 PQQ_3: PQQ-like domai 20.9 1.4E+02 0.003 15.2 2.5 20 18-37 17-37 (40)
34 PF06228 ChuX_HutX: Haem utili 20.8 1.1E+02 0.0023 21.0 2.6 32 22-54 80-111 (141)
35 cd03701 IF2_IF5B_II IF2_IF5B_I 20.0 1E+02 0.0022 19.3 2.2 18 12-29 14-31 (95)
No 1
>TIGR00149 TIGR00149_YbjQ secondary thiamine-phosphate synthase enzyme. Members of this protein family have been studied extensively by crystallography. Members from several different species have been shown to have sufficient thiamin phosphate synthase activity (EC 2.5.1.3) to complement thiE mutants. However, it is presumed that this is a secondary activity, and the primary function of this enzyme remains unknown.
Probab=99.94 E-value=2e-27 Score=161.50 Aligned_cols=52 Identities=37% Similarity=0.859 Sum_probs=50.5
Q ss_pred CchhhhHhhhcCCceEEEeeCCEecccCcceEEEEEcCCCCCceEEEEEEecc
Q psy13017 2 ELPAHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTLNGV 54 (74)
Q Consensus 2 d~~AHlkssL~G~SltiPV~dG~L~LGtWQ~Iyl~Efd~gpr~R~v~v~v~Ge 54 (74)
|++|||||+|+|+|++|||.||+|.||+||+|||+||| +||+|+|+|+++||
T Consensus 81 n~~aHlka~L~G~s~tipi~dG~L~LGtwQ~I~l~E~D-g~r~R~v~v~i~Ge 132 (132)
T TIGR00149 81 NMDAHIKSSLLGTSQHVPVENGRLQLGTWQGIFFAEFD-GPRTRRIIVKVQGE 132 (132)
T ss_pred CHHHHHHHHhcCccEEEEEeCCEEcccCccEEEEEECC-CCCCcEEEEEEEeC
Confidence 89999999999999999999999999999999999998 89999999999997
No 2
>PF01894 UPF0047: Uncharacterised protein family UPF0047; InterPro: IPR001602 This family contains small uncharacterised proteins of 14 to 16 kDa mainly from bacteria although the signatures also occur in a hypothetical protein from archaea and from yeast.; PDB: 1VPH_E 2P6C_A 2CU5_A 1VMJ_A 1XBF_B 1VMH_A 1VE0_A 2P6H_B 1VMF_C.
Probab=99.94 E-value=6.1e-27 Score=156.50 Aligned_cols=50 Identities=48% Similarity=0.903 Sum_probs=43.9
Q ss_pred CchhhhHhhhcCCceEEEeeCCEecccCcceEEEEEcCCCCCceEEEEEEe
Q psy13017 2 ELPAHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTLN 52 (74)
Q Consensus 2 d~~AHlkssL~G~SltiPV~dG~L~LGtWQ~Iyl~Efd~gpr~R~v~v~v~ 52 (74)
|++||+||+|+|+|++|||.||+|.||+||+|||+||| +||+|+|+++++
T Consensus 69 n~~aHlks~l~G~S~~vpv~~G~L~LGtwQ~I~l~E~d-gpr~R~v~v~i~ 118 (118)
T PF01894_consen 69 NAPAHLKSSLIGPSLTVPVHDGKLALGTWQGIYLVEFD-GPRERTVVVQIM 118 (118)
T ss_dssp THHHHHHHHHH-SEEEEEEETTEE---TTEEEEEEESS--SSEEEEEEEEE
T ss_pred CccHHHHHHhcCCeEEEEEECCEEccCCcCEEEEEECC-CCCeEEEEEEEC
Confidence 89999999999999999999999999999999999998 599999999986
No 3
>COG0432 Uncharacterized conserved protein [Function unknown]
Probab=99.93 E-value=2e-26 Score=158.69 Aligned_cols=52 Identities=50% Similarity=0.896 Sum_probs=48.4
Q ss_pred CchhhhHhhhcCCceEEEeeCCEecccCcceEEEEEcCCCCCceEEEEEEec
Q psy13017 2 ELPAHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTLNG 53 (74)
Q Consensus 2 d~~AHlkssL~G~SltiPV~dG~L~LGtWQ~Iyl~Efd~gpr~R~v~v~v~G 53 (74)
||+|||||+|+|+|++|||.||+|.|||||+|||+|||++++.|+|+++++|
T Consensus 86 n~~aHlkasllG~S~~iPv~~GrL~LGTWQ~I~~~E~dg~r~~R~v~v~i~g 137 (137)
T COG0432 86 NAPAHLKASLLGPSLTIPVINGRLVLGTWQGIFLVEFDGPRHRRRVVVKIIG 137 (137)
T ss_pred chHHHHHHHhcCceEEEEEeCCeEceecccEEEEEEecCCCCccEEEEEEcC
Confidence 8999999999999999999999999999999999999854444999999987
No 4
>KOG3267|consensus
Probab=99.84 E-value=1.4e-21 Score=133.40 Aligned_cols=52 Identities=50% Similarity=0.941 Sum_probs=51.1
Q ss_pred CchhhhHhhhcCCceEEEeeCCEecccCcceEEEEEcCCCCCceEEEEEEec
Q psy13017 2 ELPAHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTLNG 53 (74)
Q Consensus 2 d~~AHlkssL~G~SltiPV~dG~L~LGtWQ~Iyl~Efd~gpr~R~v~v~v~G 53 (74)
||+||+||+|+|++++|||.+|+|.|||||+|+|+||++.|..|+|+++++|
T Consensus 86 dmpahikssl~g~qltipit~gklslgtwq~i~l~e~r~~p~ar~iv~ti~g 137 (138)
T KOG3267|consen 86 DMPAHIKSSLFGCQLTIPITKGKLSLGTWQDIQLAEFRDAPHARRIVCTIIG 137 (138)
T ss_pred cchhhhhhccccceEEEEeccCeecccccccchhhhhhcCCcccEEEEEEec
Confidence 8999999999999999999999999999999999999999999999999987
No 5
>cd07999 GH7_CBH_EG Glycosyl hydrolase family 7. Glycosyl hydrolase family 7 contains eukaryotic endoglucanases (EGs) and cellobiohydrolases (CBHs) that hydrolyze glycosidic bonds using a double-displacement mechanism. This leads to a net retention of the conformation at the anomeric carbon. Both enzymes work synergistically in the degradation of cellulose,which is the main component of plant cell wall, and is composed of beta-1,4 linked glycosyl units. EG cleaves the beta-1,4 linkages of cellulose and CBH cleaves off cellobiose disaccharide units from the reducing end of the chain. In general, the O-glycosyl hydrolases are a widespread group of enzymes that hydrolyze the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycoside hydrolase family 7.
Probab=66.46 E-value=7.1 Score=31.31 Aligned_cols=36 Identities=28% Similarity=0.407 Sum_probs=30.9
Q ss_pred hhcCCceEEEeeCCEecccCcceEEEEEcC-CCCCce
Q psy13017 10 CFLGSSLTIPISDGKLNLGMWQGIWLCEHR-DQAGSR 45 (74)
Q Consensus 10 sL~G~SltiPV~dG~L~LGtWQ~Iyl~Efd-~gpr~R 45 (74)
-|+|+..++-|.-.+|-.|--..+||+|.| +|.+.|
T Consensus 114 ~Llg~EftFDVD~S~LpCGlNgALYfveMdadGg~s~ 150 (386)
T cd07999 114 KLLGQEFTFDVDMSNLPCGMNGALYLSEMDADGGMSK 150 (386)
T ss_pred EecCCeeEEEeecccCCccccceeeeeeecCCCCccc
Confidence 488999999999999999999999999987 344433
No 6
>PF15585 Imm46: Immunity protein 46
Probab=60.65 E-value=14 Score=25.54 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=36.9
Q ss_pred CEecccCcceEEEEEcCCCCCc--eEEEEEEecccCCCCCCCCCCCCCcc
Q psy13017 23 GKLNLGMWQGIWLCEHRDQAGS--RKLVVTLNGVLGDTKMSPLSPGSPMV 70 (74)
Q Consensus 23 G~L~LGtWQ~Iyl~Efd~gpr~--R~v~v~v~Ge~~~~~~~~~~~~~~~~ 70 (74)
|+++=|.|.=+|..+.++.+.. =+|++..-|+-......=+||-.|+|
T Consensus 78 ~e~aPGSYGlLy~rDDEd~~~~neFrV~vl~RG~~te~~D~~LSP~iP~I 127 (129)
T PF15585_consen 78 AEIAPGSYGLLYIRDDEDPEHFNEFRVFVLARGELTEQRDPFLSPCIPTI 127 (129)
T ss_pred HHhCCCceeEEEEecCCCCCCCCceEEEEEEccEEeeccCCCcCCccccc
Confidence 5678899998998876554433 45666667998888888999999987
No 7
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=53.23 E-value=6.6 Score=33.43 Aligned_cols=18 Identities=39% Similarity=0.640 Sum_probs=16.4
Q ss_pred CCEecccCcceEEEEEcC
Q psy13017 22 DGKLNLGMWQGIWLCEHR 39 (74)
Q Consensus 22 dG~L~LGtWQ~Iyl~Efd 39 (74)
+|+|-.||||+||+.|-.
T Consensus 216 qg~LWVGTdqGv~~~e~~ 233 (671)
T COG3292 216 QGRLWVGTDQGVYLQEAE 233 (671)
T ss_pred cCcEEEEeccceEEEchh
Confidence 699999999999999864
No 8
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=45.44 E-value=16 Score=20.87 Aligned_cols=18 Identities=28% Similarity=0.328 Sum_probs=15.2
Q ss_pred CCEecccCcceEEEEEcC
Q psy13017 22 DGKLNLGMWQGIWLCEHR 39 (74)
Q Consensus 22 dG~L~LGtWQ~Iyl~Efd 39 (74)
+|.+.|.+||.|+|...+
T Consensus 38 ~~~irlT~~Q~l~l~~v~ 55 (69)
T PF03460_consen 38 DGEIRLTTRQNLQLRGVP 55 (69)
T ss_dssp TSEEEEETTSCEEEEEEE
T ss_pred CCeEEECCCCeEEEeCCC
Confidence 589999999999987653
No 9
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=44.63 E-value=31 Score=26.39 Aligned_cols=29 Identities=10% Similarity=0.184 Sum_probs=21.8
Q ss_pred cccCcceEEEEEcCCCCCc------------eEEEEEEecc
Q psy13017 26 NLGMWQGIWLCEHRDQAGS------------RKLVVTLNGV 54 (74)
Q Consensus 26 ~LGtWQ~Iyl~Efd~gpr~------------R~v~v~v~Ge 54 (74)
..+-|+++||+|+.....+ +...++++|.
T Consensus 231 k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~~~t~~~kilGs 271 (279)
T COG0077 231 KTGLGEYLFFIDIEGHIDDPLVKEALEELKEITEFVKILGS 271 (279)
T ss_pred CCCCeeEEEEEEEecCcCcHhHHHHHHHHHhheeEEEEEee
Confidence 3478999999999865554 3567777776
No 10
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=44.34 E-value=16 Score=21.58 Aligned_cols=13 Identities=0% Similarity=-0.174 Sum_probs=11.1
Q ss_pred cCcceEEEEEcCC
Q psy13017 28 GMWQGIWLCEHRD 40 (74)
Q Consensus 28 GtWQ~Iyl~Efd~ 40 (74)
..|+.+||+|++.
T Consensus 39 ~~~~y~Ffvd~~~ 51 (74)
T cd04904 39 NGSEYEFFVDCEV 51 (74)
T ss_pred CCceEEEEEEEEc
Confidence 4699999999973
No 11
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=42.26 E-value=25 Score=22.47 Aligned_cols=11 Identities=36% Similarity=1.192 Sum_probs=8.7
Q ss_pred CcceEEEEEcC
Q psy13017 29 MWQGIWLCEHR 39 (74)
Q Consensus 29 tWQ~Iyl~Efd 39 (74)
-||||.||+..
T Consensus 4 l~~GIL~CD~~ 14 (131)
T PF07762_consen 4 LWRGILFCDVF 14 (131)
T ss_pred CCCCEEEEECC
Confidence 37999999943
No 12
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=39.91 E-value=49 Score=22.60 Aligned_cols=37 Identities=27% Similarity=0.465 Sum_probs=23.5
Q ss_pred ceEEE-eeCCEecccCcceEEEEEcC-CC------CCceEEEEEEeccc
Q psy13017 15 SLTIP-ISDGKLNLGMWQGIWLCEHR-DQ------AGSRKLVVTLNGVL 55 (74)
Q Consensus 15 SltiP-V~dG~L~LGtWQ~Iyl~Efd-~g------pr~R~v~v~v~Ge~ 55 (74)
+-.|| +.+|.=.+ .++|+|.. .. +.+|.+-|.+.|+.
T Consensus 70 ~Y~ip~~~~G~Y~V----~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~ 114 (174)
T PF11721_consen 70 SYDIPVVPNGTYTV----RLHFAELYFGASGGASGPGQRVFDVYVNGET 114 (174)
T ss_dssp EEEEE--S-EEEEE----EEEEE-SSS--------SSSS-EEEEETTEE
T ss_pred EEEEecCCCcEEEE----EEEeccccccccccccCCCceEEEEEecceE
Confidence 45688 88888666 57999954 35 67899999998863
No 13
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.79 E-value=18 Score=22.79 Aligned_cols=13 Identities=0% Similarity=-0.189 Sum_probs=11.0
Q ss_pred cCcceEEEEEcCC
Q psy13017 28 GMWQGIWLCEHRD 40 (74)
Q Consensus 28 GtWQ~Iyl~Efd~ 40 (74)
..||.+||+|++.
T Consensus 53 ~~~~Y~FfVDieg 65 (90)
T cd04931 53 NKDEYEFFINLDK 65 (90)
T ss_pred CCceEEEEEEEEc
Confidence 4699999999973
No 14
>PF00840 Glyco_hydro_7: Glycosyl hydrolase family 7; InterPro: IPR001722 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 7 GH7 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family C. Exoglucanases and cellobiohydrolases [] play a role in the conversion of cellulose to glucose by cutting the dissaccharide cellobiose from the nonreducing end of the cellulose polymer chain. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) via a linker region that is rich in proline and/or hydroxy-amino acids. In type I exoglucanases, the CBD domain is found at the C-terminal extremity of these enzyme (this short domain forms a hairpin loop structure stabilised by 2 disulphide bridges).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2Y9N_A 2Y9L_A 2RFW_D 2RFZ_A 2RFY_D 2RG0_C 1EG1_C 1OVW_D 2OVW_A 4OVW_A ....
Probab=39.05 E-value=28 Score=28.36 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=24.8
Q ss_pred hhcCCceEEEeeCCEecccCcceEEEEEcC-CCCCc
Q psy13017 10 CFLGSSLTIPISDGKLNLGMWQGIWLCEHR-DQAGS 44 (74)
Q Consensus 10 sL~G~SltiPV~dG~L~LGtWQ~Iyl~Efd-~gpr~ 44 (74)
-|+|+..++-|.=-+|-.|--..+||+|.+ +|.+.
T Consensus 120 ~L~~~EftFdVD~S~lpCG~NgALYf~eM~~dGG~~ 155 (433)
T PF00840_consen 120 KLLNQEFTFDVDVSNLPCGLNGALYFVEMDADGGKS 155 (433)
T ss_dssp E-TTEEEEEEEETTT--TTEEEEEEEE---TTTTTT
T ss_pred eeCCCeEEEEEeccCCCCcccccEEEEeecCCCCcc
Confidence 378999999999999999999999999977 34444
No 15
>TIGR03500 FliO_TIGR flagellar biosynthetic protein FliO. This short protein found in flagellar biosynthesis operons contains a highly hydrophobic N-terminal sequence followed generally by two basic amino acids. This region is reminiscent of but distinct from the twin-arginine translocation signal sequence. Some instances of this gene have been names "FliZ" but phylogenetic tree building supports a single FliO family.
Probab=39.03 E-value=61 Score=18.82 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=18.6
Q ss_pred CEecccCcceEEEEEcCCCCCceEEEEEE
Q psy13017 23 GKLNLGMWQGIWLCEHRDQAGSRKLVVTL 51 (74)
Q Consensus 23 G~L~LGtWQ~Iyl~Efd~gpr~R~v~v~v 51 (74)
+++.||.-++++++|.. +|.+++-+
T Consensus 35 ~~~~Lg~~~~l~vV~v~----~~~~llgv 59 (69)
T TIGR03500 35 ESLPLGPKESLVLVEVG----DRQLLLGV 59 (69)
T ss_pred EEEeECCCCEEEEEEEC----CEEEEEEE
Confidence 45889999999999985 45555544
No 16
>PF11743 DUF3301: Protein of unknown function (DUF3301); InterPro: IPR021732 This family is conserved in Proteobacteria, but the function is not known.
Probab=36.39 E-value=53 Score=20.92 Aligned_cols=31 Identities=16% Similarity=0.334 Sum_probs=21.1
Q ss_pred CCEecccCcceEEEEEcCC-CCCceEEEEEEeccc
Q psy13017 22 DGKLNLGMWQGIWLCEHRD-QAGSRKLVVTLNGVL 55 (74)
Q Consensus 22 dG~L~LGtWQ~Iyl~Efd~-gpr~R~v~v~v~Ge~ 55 (74)
+|++ .|+.+|-+||-. |.....-.+.+.|..
T Consensus 57 ~g~~---~~~r~y~FEFS~~G~~ry~G~l~m~G~~ 88 (97)
T PF11743_consen 57 RGRL---RWRRVYQFEFSSDGEDRYQGELVMLGRR 88 (97)
T ss_pred CCCe---EEEEEEEEEEeCCChhcceEEEEEECCe
Confidence 5655 479999999873 554455666666764
No 17
>PRK11899 prephenate dehydratase; Provisional
Probab=33.30 E-value=18 Score=27.16 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=18.6
Q ss_pred cCcceEEEEEcCCCCCc------------eEEEEEEecc
Q psy13017 28 GMWQGIWLCEHRDQAGS------------RKLVVTLNGV 54 (74)
Q Consensus 28 GtWQ~Iyl~Efd~gpr~------------R~v~v~v~Ge 54 (74)
+.|+++||+|++....+ ....+.++|.
T Consensus 233 ~~~~Y~F~id~eg~~~d~~v~~aL~~l~~~~~~~kvLGs 271 (279)
T PRK11899 233 SFTATQFYADIEGHPEDRNVALALEELRFFSEEVRILGV 271 (279)
T ss_pred CCceEEEEEEEECCCCCHHHHHHHHHHHHhcCcEEEeee
Confidence 57999999999753332 2455667765
No 18
>PF04347 FliO: Flagellar biosynthesis protein, FliO; InterPro: IPR022781 FliO is an essential component of the flagellum-specific protein export apparatus []. It is an integral membrane protein. Its precise molecular function is unknown. FliO is a short protein found in flagellar biosynthesis operons, and which contains a highly hydrophobic N-terminal sequence followed generally by two basic amino acids. This region is reminiscent of but distinct from the twin-arginine translocation signal sequence. Some instances of this gene have been names "FliZ" but phylogenetic tree building supports a single FliO family.; GO: 0043064 flagellum organization, 0016021 integral to membrane, 0019861 flagellum
Probab=32.99 E-value=85 Score=18.61 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=18.6
Q ss_pred CEecccCcceEEEEEcCCCCCceEEEEEE
Q psy13017 23 GKLNLGMWQGIWLCEHRDQAGSRKLVVTL 51 (74)
Q Consensus 23 G~L~LGtWQ~Iyl~Efd~gpr~R~v~v~v 51 (74)
.++.||.=++|+++|.. +|.+++-+
T Consensus 22 ~~~~Lg~~~~l~lV~v~----~~~~Llgv 46 (84)
T PF04347_consen 22 ERLPLGPKKSLVLVEVG----GRYLLLGV 46 (84)
T ss_pred EEEEECCCCEEEEEEEC----CEEEEEEE
Confidence 35889999999999985 45565544
No 19
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=31.81 E-value=47 Score=18.38 Aligned_cols=13 Identities=46% Similarity=0.669 Sum_probs=10.7
Q ss_pred CceEEEeeCCEec
Q psy13017 14 SSLTIPISDGKLN 26 (74)
Q Consensus 14 ~SltiPV~dG~L~ 26 (74)
-|++|-|.||++.
T Consensus 16 GsV~iiiqdG~vv 28 (38)
T PF10055_consen 16 GSVTIIIQDGRVV 28 (38)
T ss_pred ceEEEEEECCEEE
Confidence 3789999999864
No 20
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=30.72 E-value=75 Score=23.04 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=27.7
Q ss_pred hhcCCceEEEeeCCEecccCcceEEEEEcCCCC
Q psy13017 10 CFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQA 42 (74)
Q Consensus 10 sL~G~SltiPV~dG~L~LGtWQ~Iyl~Efd~gp 42 (74)
-++|..+-+.|=|| |.=|.-..|.|+|..+|.
T Consensus 110 RfIGTPvD~iVFdG-Ls~G~i~~IvFvEVKtGk 141 (175)
T COG4741 110 RFIGTPVDFIVFDG-LSEGNIESIVFVEVKTGK 141 (175)
T ss_pred eeeCCCceEEEEcC-CCcCceeEEEEEEEecCC
Confidence 47899999999999 666999999999987763
No 21
>PF14215 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription factors N-terminal
Probab=29.68 E-value=45 Score=23.03 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=17.5
Q ss_pred CceEEEeeCCEecccCcceEE
Q psy13017 14 SSLTIPISDGKLNLGMWQGIW 34 (74)
Q Consensus 14 ~SltiPV~dG~L~LGtWQ~Iy 34 (74)
.=+.|||.+|=|.||+-+-|.
T Consensus 130 Tiv~IPv~~GVvELGSt~~I~ 150 (163)
T PF14215_consen 130 TIVCIPVPNGVVELGSTEKIP 150 (163)
T ss_pred eEEEEEecCCEEEeeeeeeec
Confidence 556799999999999987663
No 22
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=28.17 E-value=63 Score=23.87 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=20.1
Q ss_pred ceEEEeeCC--EecccCcceEEEEEcC
Q psy13017 15 SLTIPISDG--KLNLGMWQGIWLCEHR 39 (74)
Q Consensus 15 SltiPV~dG--~L~LGtWQ~Iyl~Efd 39 (74)
..+.|+..+ .|.+||=+|||+.+.+
T Consensus 4 ~~~~~~~~~~~~lL~GTe~Gly~~~~~ 30 (302)
T smart00036 4 KWNHPITCDGKWLLVGTEEGLYVLNIS 30 (302)
T ss_pred eEccccccCCcEEEEEeCCceEEEEcc
Confidence 345677766 8999999999999865
No 23
>PRK11898 prephenate dehydratase; Provisional
Probab=28.14 E-value=53 Score=24.46 Aligned_cols=15 Identities=7% Similarity=0.191 Sum_probs=11.9
Q ss_pred cCcceEEEEEcCCCC
Q psy13017 28 GMWQGIWLCEHRDQA 42 (74)
Q Consensus 28 GtWQ~Iyl~Efd~gp 42 (74)
..|+.+||+|++...
T Consensus 236 ~~~~y~F~vd~eg~~ 250 (283)
T PRK11898 236 GLGTYFFFIDVEGHI 250 (283)
T ss_pred CCccEEEEEEEEccC
Confidence 469999999997433
No 24
>COG3443 Predicted periplasmic or secreted protein [General function prediction only]
Probab=26.60 E-value=27 Score=25.61 Aligned_cols=10 Identities=30% Similarity=0.710 Sum_probs=7.8
Q ss_pred ccCcceEEEE
Q psy13017 27 LGMWQGIWLC 36 (74)
Q Consensus 27 LGtWQ~Iyl~ 36 (74)
=|.||+||-.
T Consensus 36 ~G~WQSVYPy 45 (193)
T COG3443 36 DGDWQSVYPY 45 (193)
T ss_pred cCcceeechh
Confidence 4899999853
No 25
>PF14438 SM-ATX: Ataxin 2 SM domain; PDB: 1M5Q_1.
Probab=26.58 E-value=58 Score=19.28 Aligned_cols=43 Identities=12% Similarity=0.392 Sum_probs=27.6
Q ss_pred hhhHhhhcCCceEEEeeCCEecccCcceEEEEEcCCCCCceEEEEEEe
Q psy13017 5 AHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTLN 52 (74)
Q Consensus 5 AHlkssL~G~SltiPV~dG~L~LGtWQ~Iyl~Efd~gpr~R~v~v~v~ 52 (74)
-|+-+.++|..++|=+.||.. ++|||-. ++..+.+=.|+++.-
T Consensus 4 ~~l~~~lvG~~V~V~~~~G~~----yeGif~s-~s~~~~~~~vvLk~a 46 (77)
T PF14438_consen 4 VYLLTNLVGQTVEVTTKNGSV----YEGIFHS-ASPESNEFDVVLKMA 46 (77)
T ss_dssp HHHHHTTTTSEEEEEETTS-E----EEEEEEE-E-T---T--EEEEEE
T ss_pred HHHHHhCcCCEEEEEECCCCE----EEEEEEe-CCCcccceeEEEEee
Confidence 578899999999999999986 6788764 322221334555543
No 26
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=25.21 E-value=81 Score=21.82 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=16.1
Q ss_pred eCCEecccCcceEEEEEcC
Q psy13017 21 SDGKLNLGMWQGIWLCEHR 39 (74)
Q Consensus 21 ~dG~L~LGtWQ~Iyl~Efd 39 (74)
.+-+|.+||-.|+|+.+.+
T Consensus 6 ~~~~L~vGt~~Gl~~~~~~ 24 (275)
T PF00780_consen 6 WGDRLLVGTEDGLYVYDLS 24 (275)
T ss_pred CCCEEEEEECCCEEEEEec
Confidence 3567999999999999984
No 27
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.69 E-value=56 Score=21.43 Aligned_cols=13 Identities=8% Similarity=-0.419 Sum_probs=11.0
Q ss_pred cCcceEEEEEcCC
Q psy13017 28 GMWQGIWLCEHRD 40 (74)
Q Consensus 28 GtWQ~Iyl~Efd~ 40 (74)
..|+.+||+|++.
T Consensus 80 ~~~eY~FfIdieg 92 (115)
T cd04930 80 EGGDLEVLVRCEV 92 (115)
T ss_pred CCceEEEEEEEEe
Confidence 5699999999873
No 28
>PF13382 Adenine_deam_C: Adenine deaminase C-terminal domain; PDB: 3T8L_B 3T81_A 3NQB_A.
Probab=22.56 E-value=2.6e+02 Score=19.67 Aligned_cols=37 Identities=11% Similarity=0.255 Sum_probs=19.4
Q ss_pred eEEEeeCCEecccCcceEEEEE-cCCCCCceEEEEEEe
Q psy13017 16 LTIPISDGKLNLGMWQGIWLCE-HRDQAGSRKLVVTLN 52 (74)
Q Consensus 16 ltiPV~dG~L~LGtWQ~Iyl~E-fd~gpr~R~v~v~v~ 52 (74)
+.+||.||.+..-.-+.+-++- ++.....+++.+-++
T Consensus 10 ~~~~v~dG~~~~~~~~dl~kiavi~R~~~~g~~~~g~v 47 (171)
T PF13382_consen 10 VEVPVKDGEVVPDPERDLLKIAVIERHGGTGNIGIGFV 47 (171)
T ss_dssp EEEEEETTEEE----TTEEEEEEE--SSSS--EEEEEE
T ss_pred EEEeeeCCEEecCCCCCEEEEEEEEcCCCCCCEEEEEE
Confidence 5699999999987556664433 443344566777654
No 29
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=21.38 E-value=94 Score=19.71 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=16.1
Q ss_pred cCCceEEEeeCCEecccC
Q psy13017 12 LGSSLTIPISDGKLNLGM 29 (74)
Q Consensus 12 ~G~SltiPV~dG~L~LGt 29 (74)
.|.-.++.|.+|.|..|.
T Consensus 14 ~G~vatviV~~GtL~~Gd 31 (95)
T cd03702 14 RGPVATVLVQNGTLKVGD 31 (95)
T ss_pred CCccEEEEEEcCeEeCCC
Confidence 578889999999999986
No 30
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=21.37 E-value=97 Score=18.19 Aligned_cols=16 Identities=19% Similarity=0.497 Sum_probs=14.5
Q ss_pred cCCceEEEeeCCEecc
Q psy13017 12 LGSSLTIPISDGKLNL 27 (74)
Q Consensus 12 ~G~SltiPV~dG~L~L 27 (74)
+|..+.|-|.+|+|.+
T Consensus 40 ~G~~v~V~v~~g~lvI 55 (57)
T PF08845_consen 40 IGDPVKVRVMPGCLVI 55 (57)
T ss_pred CCCEEEEEEECCEEEE
Confidence 7999999999999975
No 31
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.35 E-value=66 Score=19.34 Aligned_cols=12 Identities=0% Similarity=-0.272 Sum_probs=10.5
Q ss_pred cCcceEEEEEcC
Q psy13017 28 GMWQGIWLCEHR 39 (74)
Q Consensus 28 GtWQ~Iyl~Efd 39 (74)
..|+..||+|++
T Consensus 39 ~~~~y~F~id~e 50 (74)
T cd04929 39 RSSEFEIFVDCE 50 (74)
T ss_pred CCceEEEEEEEE
Confidence 459999999997
No 32
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=21.20 E-value=2.1e+02 Score=19.62 Aligned_cols=48 Identities=19% Similarity=0.129 Sum_probs=26.3
Q ss_pred eEEEeeCCEecccCcceEEEEEcCCCCCceEEEEEEecccCCC----CCCCCCCCCCc
Q psy13017 16 LTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTLNGVLGDT----KMSPLSPGSPM 69 (74)
Q Consensus 16 ltiPV~dG~L~LGtWQ~Iyl~Efd~gpr~R~v~v~v~Ge~~~~----~~~~~~~~~~~ 69 (74)
..+...+++..+|++=-+. +.++ +...+++.|...+. ...-.|+.||+
T Consensus 74 ~ii~~~~~~V~~Gs~Vtl~---~~~g---~~~~~~IVg~~e~d~~~~~~~~IS~~SPl 125 (158)
T PRK05892 74 PTPWSGSETLPGGTEVTLR---FPDG---EVETMHVISVVEETPVGREAETLTADSPL 125 (158)
T ss_pred EEecCCCCEEEcCcEEEEE---ECCC---CEEEEEEeCchhcCcccccCCEEccCCHH
Confidence 3446677899999974443 2322 34455666543321 23445666664
No 33
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=20.88 E-value=1.4e+02 Score=15.19 Aligned_cols=20 Identities=10% Similarity=0.396 Sum_probs=12.8
Q ss_pred EEeeCCEecccCcc-eEEEEE
Q psy13017 18 IPISDGKLNLGMWQ-GIWLCE 37 (74)
Q Consensus 18 iPV~dG~L~LGtWQ-~Iyl~E 37 (74)
+-+.||++..|++. .+|-++
T Consensus 17 ~~v~~g~vyv~~~dg~l~ald 37 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDGNLYALD 37 (40)
T ss_dssp -EECTSEEEEE-TTSEEEEEE
T ss_pred CEEECCEEEEEcCCCEEEEEe
Confidence 46779999999984 455444
No 34
>PF06228 ChuX_HutX: Haem utilisation ChuX/HutX; InterPro: IPR010413 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2OVI_A 2PH0_B 3FM2_B 2HQV_A.
Probab=20.83 E-value=1.1e+02 Score=21.03 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=22.1
Q ss_pred CCEecccCcceEEEEEcCCCCCceEEEEEEecc
Q psy13017 22 DGKLNLGMWQGIWLCEHRDQAGSRKLVVTLNGV 54 (74)
Q Consensus 22 dG~L~LGtWQ~Iyl~Efd~gpr~R~v~v~v~Ge 54 (74)
+|.|.+..|..|+|++-. -.+....-+++..+
T Consensus 80 ~gHl~~~~~~~I~fv~~p-f~g~~S~sv~F~~~ 111 (141)
T PF06228_consen 80 HGHLKLDNIASIAFVSRP-FMGRESYSVQFFDA 111 (141)
T ss_dssp EEEEEGGGEEEEEEEEEE-ETTEEEEEEEEEET
T ss_pred EeEEchhheeeeeeeecc-cCCCceEEEEEECC
Confidence 578899999999999843 23344566666543
No 35
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=20.04 E-value=1e+02 Score=19.25 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=16.0
Q ss_pred cCCceEEEeeCCEecccC
Q psy13017 12 LGSSLTIPISDGKLNLGM 29 (74)
Q Consensus 12 ~G~SltiPV~dG~L~LGt 29 (74)
.|.-.++-|.+|.|..|.
T Consensus 14 ~G~vatviV~~GtL~~Gd 31 (95)
T cd03701 14 RGPVATVIVQNGTLKKGD 31 (95)
T ss_pred CCeeEEEEEEcCeEecCC
Confidence 477889999999999996
Done!