RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13017
(74 letters)
>1vmf_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI, unknown function; HET: EPE; 1.46A {Bacillus
halodurans} SCOP: d.273.1.1
Length = 145
Score = 75.9 bits (186), Expect = 1e-19
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 2 ELPAHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTLNG 53
AH+K +G + T+ IS+G+L LG WQG++ CE +RK VV L
Sbjct: 93 NTAAHLKTSTVGHAQTLIISEGRLVLGTWQGVYFCEFDGPRTNRKFVVKLLT 144
>1vph_A Hypothetical protein SSO2532; YBJQ-like fold, structural genomics,
joint center for struct genomics, JCSG, protein
structure initiative; 1.76A {Sulfolobus solfataricus}
SCOP: d.273.1.1
Length = 149
Score = 74.8 bits (183), Expect = 3e-19
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 2 ELPAHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTLNG 53
AH+ A FLG+ P+ +GKL G WQ I+L E R + V + G
Sbjct: 97 NAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHITVEILG 148
>1vmj_A Hypothetical protein TM0723; putative thiamin phosphate synthase,
structural genomics, JO center for structural genomics,
JCSG; 1.52A {Thermotoga maritima} SCOP: d.273.1.1
Length = 151
Score = 73.2 bits (179), Expect = 1e-18
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 2 ELPAHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTLNG 53
AH+K +G + I I+D K++LG W+ ++ E D ++++V + G
Sbjct: 100 NADAHLKRTIMGREVVIAITDRKMDLGPWEQVFYGEF-DGMRPKRVLVKIIG 150
>2cu5_A Conserved hypothetical protein TT1486; thermus thermophilus HB8, ST
genomics, riken structural genomics/proteomics
initiative; 1.84A {Thermus thermophilus}
Length = 129
Score = 71.3 bits (174), Expect = 4e-18
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 2 ELPAHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTL 51
AH+K+ G L + G+L LG WQ ++L E D R++ V L
Sbjct: 80 NSHAHLKSLLTGVHLLLLAEKGRLRLGRWQQVFLAEF-DGPRVREVWVRL 128
>1ve0_A Hypothetical protein (ST2072); structural genomics, zinc binding
protein, metal binding Pro; 2.00A {Sulfolobus tokodaii}
Length = 134
Score = 70.9 bits (173), Expect = 6e-18
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 1 MELPAHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTLNG 53
AHV + +G+S +PI +GKL+LG WQ I L E D +R ++V G
Sbjct: 82 NNGHAHVISAIIGNSRVVPIIEGKLDLGTWQRIILLEF-DGPRTRTVLVKSMG 133
>2p6h_A Hypothetical protein; structural genomics, unknown function,
NPPSFA, national PROJ protein structural and functional
analyses; 1.95A {Aeropyrum pernix}
Length = 134
Score = 70.9 bits (173), Expect = 6e-18
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 1 MELPAHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTLNG 53
+ AH+ +G S IP+ G+L+LG WQ I E D R + + G
Sbjct: 82 VNAHAHLGNTIIGDSRVIPVVGGRLSLGTWQRILFVEM-DGPRERTVNLLYLG 133
>2p6c_A AQ_2013 protein; NPPSFA, national project on protein structural and
functiona analyses, riken structural genomics/proteomics
initiative; 2.00A {Aquifex aeolicus}
Length = 137
Score = 70.1 bits (171), Expect = 1e-17
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 2 ELPAHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTLNG 53
AH+K + +PI++GKL+LG WQ I+ E D +++V+ + G
Sbjct: 86 NGDAHLKNLLTHLQVVLPITNGKLDLGPWQEIFYAEF-DGQRPKRVVIKIIG 136
>1vmh_A Uncharacterized conserved protein YJBQ/UPF0047 FA ortholog YUGU
B.subtilis; YJBQ-like fold, structural genomics; 1.31A
{Clostridium acetobutylicum} SCOP: d.273.1.1 PDB: 1xbf_A
Length = 144
Score = 70.5 bits (172), Expect = 1e-17
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 2 ELPAHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTL 51
AH+KA +GSS I I +GKL LG WQGI+ E D RK+ V +
Sbjct: 95 NSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEF-DGPRDRKVFVKI 143
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation,
ADP, nucleotide binding, CARD, apoptosis; HET: ADP;
2.21A {Homo sapiens}
Length = 591
Score = 24.4 bits (53), Expect = 4.9
Identities = 2/10 (20%), Positives = 4/10 (40%)
Query: 3 LPAHVKACFL 12
L +K +
Sbjct: 375 LREDIKDYYT 384
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 23.9 bits (51), Expect = 6.9
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 17/43 (39%)
Query: 11 FLGSSLTIPI---SDGKLNLGMWQGIWLCEHRDQAGS--RKLV 48
F + IP+ DG +L R +GS ++V
Sbjct: 450 FNAKDIQIPVYDTFDGS-DL-----------RVLSGSISERIV 480
>2o62_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, unknown function; 1.75A {Nostoc punctiforme}
SCOP: b.60.1.9 b.60.1.9
Length = 270
Score = 23.7 bits (50), Expect = 8.8
Identities = 5/10 (50%), Positives = 8/10 (80%)
Query: 25 LNLGMWQGIW 34
NLG+W+G +
Sbjct: 11 QNLGVWEGSF 20
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.413
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,061,863
Number of extensions: 46978
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 12
Length of query: 74
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 30
Effective length of database: 5,473,269
Effective search space: 164198070
Effective search space used: 164198070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.9 bits)