RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13017
         (74 letters)



>d1vmfa_ d.273.1.1 (A:) Hypothetical protein BH3498 {Bacillus
           halodurans [TaxId: 86665]}
          Length = 136

 Score = 84.2 bits (208), Expect = 2e-23
 Identities = 21/53 (39%), Positives = 30/53 (56%)

Query: 1   MELPAHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTLNG 53
               AH+K   +G + T+ IS+G+L LG WQG++ CE      +RK VV L  
Sbjct: 83  GNTAAHLKTSTVGHAQTLIISEGRLVLGTWQGVYFCEFDGPRTNRKFVVKLLT 135


>d1vpha_ d.273.1.1 (A:) Hypothetical protein SSO2532 {Sulfolobus
           solfataricus [TaxId: 2287]}
          Length = 138

 Score = 82.3 bits (203), Expect = 8e-23
 Identities = 19/50 (38%), Positives = 26/50 (52%)

Query: 4   PAHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTLNG 53
            AH+ A FLG+    P+ +GKL  G WQ I+L E       R + V + G
Sbjct: 88  HAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHITVEILG 137


>d1vmja_ d.273.1.1 (A:) Hypothetical protein TM0723 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 139

 Score = 78.8 bits (194), Expect = 2e-21
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 1   MELPAHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTLNG 53
               AH+K   +G  + I I+D K++LG W+ ++  E  D    ++++V + G
Sbjct: 87  DNADAHLKRTIMGREVVIAITDRKMDLGPWEQVFYGEF-DGMRPKRVLVKIIG 138


>d1vmha_ d.273.1.1 (A:) B.subtilis YugU ortolog CAC0907 {Clostridium
           acetobutylicum [TaxId: 1488]}
          Length = 129

 Score = 72.6 bits (178), Expect = 5e-19
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 1   MELPAHVKACFLGSSLTIPISDGKLNLGMWQGIWLCEHRDQAGSRKLVVTL 51
               AH+KA  +GSS  I I +GKL LG WQGI+  E  D    RK+ V +
Sbjct: 79  GNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEF-DGPRDRKVFVKI 128


>d1hn0a2 b.18.1.17 (A:25-234) Chondroitin ABC lyase I, N-terminal
           domain {Proteus vulgaris [TaxId: 585]}
          Length = 210

 Score = 23.4 bits (50), Expect = 3.4
 Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 24  KLNLGMWQGIWLCEHRDQAGS-RKLVVTLNGVLGDTKMSPLSPGSPMVS 71
           KL+   W+ + +  + D       L  T     G       S G+ + S
Sbjct: 122 KLDFTGWRAVGVSLNNDLENREMTLNATNTSSDGTQDSIGRSLGAKVDS 170


>d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm
           (Tenebrio molitor), larva [TaxId: 7067]}
          Length = 378

 Score = 23.3 bits (49), Expect = 3.4
 Identities = 4/12 (33%), Positives = 6/12 (50%)

Query: 28  GMWQGIWLCEHR 39
                 ++CEHR
Sbjct: 352 NTCSNGYVCEHR 363


>d1f46a_ d.129.4.1 (A:) Cell-division protein ZipA, C-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 139

 Score = 22.9 bits (49), Expect = 4.0
 Identities = 4/22 (18%), Positives = 12/22 (54%)

Query: 44  SRKLVVTLNGVLGDTKMSPLSP 65
           ++ +   + GV+ D +   ++P
Sbjct: 100 AQHIADEVGGVVLDDQRRMMTP 121


>d2o62a2 b.60.1.9 (A:1-132) Uncharacterized protein All1756
          ortholog {Nostoc punctiforme [TaxId: 272131]}
          Length = 132

 Score = 22.5 bits (48), Expect = 6.4
 Identities = 5/11 (45%), Positives = 8/11 (72%)

Query: 24 KLNLGMWQGIW 34
            NLG+W+G +
Sbjct: 9  LQNLGVWEGSF 19


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 261,325
Number of extensions: 9037
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 9
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)