BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13018
(68 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|427789331|gb|JAA60117.1| Putative 60s ribosomal export protein nmd3 [Rhipicephalus
pulchellus]
Length = 511
Score = 67.8 bits (164), Expect = 9e-10, Method: Composition-based stats.
Identities = 36/58 (62%), Positives = 42/58 (72%), Gaps = 5/58 (8%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDM 58
+ DLEED YRQNVNIYK +I VD T+DED DAPRITL+EMLDDL ++D M
Sbjct: 447 LEDLEEDAAYRQNVNIYKDNDKIAVD-----TDDEDGDAPRITLQEMLDDLQLEDDPM 499
>gi|357604777|gb|EHJ64316.1| nonsense-mediated mRNA 3 [Danaus plexippus]
Length = 467
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/60 (58%), Positives = 43/60 (71%), Gaps = 5/60 (8%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
++DLEED RQN+NI+K +IPVD ++I DP PRITL EMLDDL I+DVDM E
Sbjct: 412 LDDLEEDPALRQNINIFKDSNKIPVDTDEI-----DPSLPRITLAEMLDDLAIEDVDMTE 466
>gi|346471561|gb|AEO35625.1| hypothetical protein [Amblyomma maculatum]
Length = 510
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/58 (62%), Positives = 42/58 (72%), Gaps = 5/58 (8%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDM 58
+ DLEED YRQNVNIYK +I VD T+DED DAPRITL+EMLDDL ++D M
Sbjct: 447 LEDLEEDAGYRQNVNIYKDSDKIAVD-----TDDEDGDAPRITLQEMLDDLQLEDDPM 499
>gi|157133750|ref|XP_001662996.1| nonsense-mediated mrna decay protein [Aedes aegypti]
gi|108881501|gb|EAT45726.1| AAEL003039-PA [Aedes aegypti]
Length = 510
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 43/61 (70%), Gaps = 5/61 (8%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEI-PVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDME 59
+ DLEED RQNVNI+K +I PVD ND+ DP PRITLEEMLDDL +DDV+M
Sbjct: 452 LEDLEEDPDLRQNVNIFKDNSKIIPVDVNDM----PDPSVPRITLEEMLDDLVLDDVEMT 507
Query: 60 E 60
E
Sbjct: 508 E 508
>gi|94468868|gb|ABF18283.1| NMD protein [Aedes aegypti]
Length = 510
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 43/61 (70%), Gaps = 5/61 (8%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEI-PVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDME 59
+ DLEED RQNVNI+K +I PVD ND+ DP PRITLEEMLDDL +DDV+M
Sbjct: 452 LEDLEEDPDLRQNVNIFKDNSKIIPVDVNDM----PDPSVPRITLEEMLDDLVLDDVEMT 507
Query: 60 E 60
E
Sbjct: 508 E 508
>gi|307202686|gb|EFN81992.1| 60S ribosomal export protein NMD3 [Harpegnathos saltator]
Length = 503
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/61 (52%), Positives = 44/61 (72%), Gaps = 6/61 (9%)
Query: 1 MNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDME 59
+++LEED RQN+NI++ +IPVD N+I DP P+ITLEEMLDDL ++DV+M
Sbjct: 447 LDELEEDPELRQNINIFRDPRKQIPVDTNEI-----DPSIPQITLEEMLDDLVLEDVEMS 501
Query: 60 E 60
E
Sbjct: 502 E 502
>gi|312371222|gb|EFR19462.1| hypothetical protein AND_22389 [Anopheles darlingi]
Length = 502
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 42/60 (70%), Gaps = 6/60 (10%)
Query: 1 MNDLEEDVLYRQNVNIYK--AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDM 58
+ DLEED RQNVNI+K ++PVD ND+ +DP PRITLEEMLDDL +DD +M
Sbjct: 444 LEDLEEDPELRQNVNIFKDSKRQQMPVDTNDM----DDPSVPRITLEEMLDDLVLDDAEM 499
>gi|391344979|ref|XP_003746771.1| PREDICTED: 60S ribosomal export protein NMD3 [Metaseiulus
occidentalis]
Length = 507
Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 40/62 (64%), Gaps = 7/62 (11%)
Query: 3 DLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEEEI 62
DLEED RQNVNIYK D+ I E E DAP I+L+EMLDD+T+DD M++
Sbjct: 447 DLEEDPALRQNVNIYK-------DSEKIAVESEAGDAPHISLQEMLDDMTLDDEAMDDAD 499
Query: 63 TS 64
T+
Sbjct: 500 TA 501
>gi|241856628|ref|XP_002416064.1| NMD protein affecting ribosome stability and mRNA decay, putative
[Ixodes scapularis]
gi|215510278|gb|EEC19731.1| NMD protein affecting ribosome stability and mRNA decay, putative
[Ixodes scapularis]
Length = 508
Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 41/58 (70%), Gaps = 5/58 (8%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDM 58
+ +LEED +YRQNVN+Y ++ VD T+DED + P+ITL+EMLDDL ++D M
Sbjct: 447 LEELEEDAVYRQNVNVYLDREKLAVD-----TDDEDGELPKITLQEMLDDLCLEDDPM 499
>gi|158294075|ref|XP_315383.4| AGAP005375-PA [Anopheles gambiae str. PEST]
gi|157015396|gb|EAA11292.5| AGAP005375-PA [Anopheles gambiae str. PEST]
Length = 510
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 42/60 (70%), Gaps = 6/60 (10%)
Query: 1 MNDLEEDVLYRQNVNIYK--AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDM 58
+ DLEED RQNVNI+K +IPVD ND+ +DP PRITLEEMLDDL ++D +M
Sbjct: 451 LEDLEEDPELRQNVNIFKDKNKQQIPVDTNDM----DDPSVPRITLEEMLDDLVLEDEEM 506
>gi|350422983|ref|XP_003493349.1| PREDICTED: 60S ribosomal export protein NMD3-like [Bombus
impatiens]
Length = 503
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 43/61 (70%), Gaps = 5/61 (8%)
Query: 1 MNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDME 59
+ DLEED RQ++NIYK + IPVD N+++ DP+ P+ITLEEMLDDL DD+++
Sbjct: 445 LEDLEEDPEMRQHINIYKDSRKLIPVDTNELS----DPNCPQITLEEMLDDLAFDDIEVS 500
Query: 60 E 60
Sbjct: 501 H 501
>gi|91091920|ref|XP_967150.1| PREDICTED: similar to nonsense-mediated mrna decay protein
[Tribolium castaneum]
gi|270000793|gb|EEZ97240.1| hypothetical protein TcasGA2_TC011038 [Tribolium castaneum]
Length = 503
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 43/61 (70%), Gaps = 5/61 (8%)
Query: 1 MNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDME 59
++DLEED RQN+NI+K +IP+D+ D D D + PRITL EMLDDL IDDV+M
Sbjct: 446 LDDLEEDPDLRQNINIFKDNTKQIPIDSGD----DVDENVPRITLAEMLDDLVIDDVEMS 501
Query: 60 E 60
E
Sbjct: 502 E 502
>gi|340727431|ref|XP_003402047.1| PREDICTED: 60S ribosomal export protein NMD3-like [Bombus
terrestris]
Length = 503
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 43/59 (72%), Gaps = 5/59 (8%)
Query: 1 MNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDM 58
+ DLEED RQ++NIYK + IPVD N+++ DP+ P+ITLEEMLDDL DD+++
Sbjct: 445 LEDLEEDPEMRQHINIYKDSRKLIPVDTNELS----DPNCPQITLEEMLDDLAFDDIEV 499
>gi|332374912|gb|AEE62597.1| unknown [Dendroctonus ponderosae]
Length = 500
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 4/60 (6%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
M+DLEED R+NVNI+K + A D + D DP+ P ITL+EMLDDLT++DV+M +
Sbjct: 445 MDDLEEDPELRRNVNIFKNS----LFAVDTDDTDYDPNKPCITLDEMLDDLTVNDVEMTD 500
>gi|332024621|gb|EGI64818.1| 60S ribosomal export protein NMD3 [Acromyrmex echinatior]
Length = 466
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 39/56 (69%), Gaps = 6/56 (10%)
Query: 1 MNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 55
+++LEED RQN+NI++ IPVD ++I DP P+ITLEEMLDDL I+D
Sbjct: 416 LDELEEDPEMRQNINIFRDVQKHIPVDTSEI-----DPSIPQITLEEMLDDLVIED 466
>gi|380018901|ref|XP_003693357.1| PREDICTED: 60S ribosomal export protein NMD3-like [Apis florea]
Length = 502
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 42/59 (71%), Gaps = 5/59 (8%)
Query: 1 MNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDM 58
+ D+EE+ RQN+NI++ IP+D N+++ DP P+ITLEEMLDDL IDDV++
Sbjct: 444 LEDIEENPEMRQNINIFRNRMKTIPIDTNELS----DPSCPQITLEEMLDDLAIDDVEV 498
>gi|66559176|ref|XP_624393.1| PREDICTED: 60S ribosomal export protein NMD3 [Apis mellifera]
Length = 503
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 5/59 (8%)
Query: 1 MNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDM 58
+ D+EED RQN+NI+K IP+D N+++ DP P+ITLEEMLDDL I+DV++
Sbjct: 445 LEDIEEDPEMRQNINIFKDRMKTIPIDTNELS----DPSYPQITLEEMLDDLAINDVEV 499
>gi|341901748|gb|EGT57683.1| hypothetical protein CAEBREN_18901 [Caenorhabditis brenneri]
Length = 511
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 8/68 (11%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDED--PDAPRITLEEMLDDLTIDDVDM 58
M D+EED L R+ +NIYK + P ++ T+D+D P+AP +L EMLDDL DD +M
Sbjct: 446 MEDIEEDALMREKINIYKDSEKAP----NVETDDDDAHPEAP--SLAEMLDDLKFDDEEM 499
Query: 59 EEEITSDQ 66
+E ++D+
Sbjct: 500 KEAESADE 507
>gi|213972521|ref|NP_001135423.1| nonsense-mediated mRNA 3 [Nasonia vitripennis]
Length = 506
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 6/63 (9%)
Query: 1 MNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDME 59
++DLEED R NVNI++ +IPVD + I DP P+ITLEEMLDDL I+D +M
Sbjct: 448 LDDLEEDPELRSNVNIFRDKSKQIPVDTDCI-----DPTMPQITLEEMLDDLVIEDEEMA 502
Query: 60 EEI 62
E I
Sbjct: 503 EFI 505
>gi|322778783|gb|EFZ09199.1| hypothetical protein SINV_05229 [Solenopsis invicta]
Length = 497
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 39/56 (69%), Gaps = 6/56 (10%)
Query: 1 MNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 55
+++LEED RQN+NIY+ IPVD N+I DP P+ITLEEM+DDL I+D
Sbjct: 447 LDELEEDPELRQNINIYRDIRKHIPVDTNEI-----DPSIPQITLEEMMDDLVIED 497
>gi|334347422|ref|XP_001369441.2| PREDICTED: hypothetical protein LOC100015345 [Monodelphis domestica]
Length = 1022
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/53 (56%), Positives = 38/53 (71%), Gaps = 6/53 (11%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 53
+ DLEED R+NVNIYKA IPV++ +T+DE APRI+L EML+DL I
Sbjct: 962 LEDLEEDEAIRKNVNIYKAS-TIPVES---DTDDE--GAPRISLAEMLEDLHI 1008
>gi|341886241|gb|EGT42176.1| hypothetical protein CAEBREN_15656 [Caenorhabditis brenneri]
Length = 511
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 8/68 (11%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDED--PDAPRITLEEMLDDLTIDDVDM 58
M D+EED L R+ +NIYK + P ++ T+D+D P+AP +L EMLDDL DD +M
Sbjct: 446 MEDIEEDALMREKINIYKDSEKAP----NVETDDDDAHPEAP--SLAEMLDDLKFDDEEM 499
Query: 59 EEEITSDQ 66
+E ++D+
Sbjct: 500 KEVESADE 507
>gi|308459422|ref|XP_003092031.1| hypothetical protein CRE_23156 [Caenorhabditis remanei]
gi|308254449|gb|EFO98401.1| hypothetical protein CRE_23156 [Caenorhabditis remanei]
Length = 516
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 7/69 (10%)
Query: 1 MNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDME 59
M D+EED L R+ +NIYK A + +D +D +D P+AP +L EMLDDL DD +M+
Sbjct: 446 MEDIEEDALMREKINIYKDAEKAVAIDGDD---DDAHPEAP--SLAEMLDDLKFDDDEMK 500
Query: 60 EEIT-SDQG 67
EE +D+G
Sbjct: 501 EETADADEG 509
>gi|383857986|ref|XP_003704484.1| PREDICTED: 60S ribosomal export protein NMD3-like [Megachile
rotundata]
Length = 504
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 5/59 (8%)
Query: 1 MNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDM 58
+ D+EED RQN+NI++ IPVD N++ D P+ITLEEMLDDL IDDV++
Sbjct: 446 LEDIEEDPEMRQNINIFRDKKKVIPVDTNEL----PDLSCPQITLEEMLDDLAIDDVEI 500
>gi|196008655|ref|XP_002114193.1| hypothetical protein TRIADDRAFT_27425 [Trichoplax adhaerens]
gi|190583212|gb|EDV23283.1| hypothetical protein TRIADDRAFT_27425 [Trichoplax adhaerens]
Length = 483
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/55 (52%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 55
+ DLEED YRQNVNIYK + N + D D P I LEEML+DL IDD
Sbjct: 427 LEDLEEDPTYRQNVNIYK---DPKFKGNKDSRPDPDEQLPSIGLEEMLEDLCIDD 478
>gi|328706094|ref|XP_001952313.2| PREDICTED: 60S ribosomal export protein NMD3-like [Acyrthosiphon
pisum]
Length = 510
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
M+DLEED RQN+NIYK P++ +++ + +D D APRI+LEEM++DL I + D+ E
Sbjct: 450 MDDLEEDKDLRQNINIYK-NPDVGIESAAEDDDDND-GAPRISLEEMMEDLCIYEDDVME 507
>gi|242015181|ref|XP_002428252.1| Nonsense-mediated mRNA decay protein, putative [Pediculus humanus
corporis]
gi|212512813|gb|EEB15514.1| Nonsense-mediated mRNA decay protein, putative [Pediculus humanus
corporis]
Length = 506
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 10/57 (17%)
Query: 10 YRQNVNIYK---AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTID---DVDMEE 60
YRQN+NIYK + IPV +++ +DP PRITL EMLDDL ID D++M E
Sbjct: 454 YRQNINIYKVEKSETTIPVTYDEM----DDPAFPRITLAEMLDDLQIDDNGDIEMNE 506
>gi|47224987|emb|CAF97402.1| unnamed protein product [Tetraodon nigroviridis]
Length = 513
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 5/60 (8%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNI++ +IPV+ ++ +D AP+I+L EML++L++ D EE
Sbjct: 452 LEDLEEDEALRKNVNIFRDASKIPVE-----SDTDDDGAPQISLAEMLEELSLTDATGEE 506
>gi|260788891|ref|XP_002589482.1| hypothetical protein BRAFLDRAFT_125192 [Branchiostoma floridae]
gi|229274660|gb|EEN45493.1| hypothetical protein BRAFLDRAFT_125192 [Branchiostoma floridae]
Length = 379
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 40/55 (72%), Gaps = 5/55 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 55
+ DLEED LYR++VNIY+ ++ V+ ++ +D DAPRI+L+EML+DL I +
Sbjct: 317 LEDLEEDPLYRKDVNIYRDAEKLAVE-----SDTDDDDAPRISLQEMLEDLHISE 366
>gi|403265970|ref|XP_003925178.1| PREDICTED: 60S ribosomal export protein NMD3 [Saimiri boliviensis
boliviensis]
Length = 508
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 448 LEDLEEDETIRKNVNIYRDS-TIPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 501
Query: 61 EITS 64
E TS
Sbjct: 502 EGTS 505
>gi|291231611|ref|XP_002735759.1| PREDICTED: NMD3 homolog [Saccoglossus kowalevskii]
Length = 507
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 7/56 (12%)
Query: 1 MNDLEEDVLYRQNVNIY-KAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 55
+ DLE+D YRQ+VNIY IPV+++D D DAP+I+L+EML+DL I +
Sbjct: 446 LEDLEDDPEYRQHVNIYMDRNKSIPVESSD------DDDAPKISLQEMLEDLNISE 495
>gi|47224989|emb|CAF97404.1| unnamed protein product [Tetraodon nigroviridis]
Length = 549
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 5/60 (8%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNI++ +IPV+ ++ +D AP+I+L EML++L++ D EE
Sbjct: 488 LEDLEEDEALRKNVNIFRDASKIPVE-----SDTDDDGAPQISLAEMLEELSLTDATGEE 542
>gi|156346911|ref|XP_001621572.1| hypothetical protein NEMVEDRAFT_v1g144377 [Nematostella vectensis]
gi|156207654|gb|EDO29472.1| predicted protein [Nematostella vectensis]
Length = 491
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 6/55 (10%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 55
+ DLEED RQNVNIY +P ++ ED + P+I+L+EML+DL ++D
Sbjct: 427 LADLEEDKTLRQNVNIYVDRDHMP------ESDAEDEEIPKISLQEMLEDLKLED 475
>gi|213511776|ref|NP_001133666.1| 60S ribosomal export protein NMD3 [Salmo salar]
gi|209154868|gb|ACI33666.1| 60S ribosomal export protein NMD3 [Salmo salar]
Length = 504
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 40/55 (72%), Gaps = 5/55 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 55
+ DLEED R+NVNI++ +IPV++ +T+DE AP+I+L EML+DL++ D
Sbjct: 443 LEDLEEDEALRKNVNIFRDASKIPVES---DTDDE--GAPQISLMEMLEDLSLTD 492
>gi|25143170|ref|NP_492114.2| Protein T25G3.3 [Caenorhabditis elegans]
gi|19171243|emb|CAA96689.2| Protein T25G3.3 [Caenorhabditis elegans]
Length = 513
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 40/61 (65%), Gaps = 6/61 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIP-VDANDINTEDEDPDAPRITLEEMLDDLTIDDVDME 59
M D+EED L R+ +NIYK + P VD +D ++ PDAP TL EMLDDL DD +M+
Sbjct: 446 MEDIEEDALMREKINIYKDAEKGPNVDGDD---AEDHPDAP--TLAEMLDDLKFDDEEMK 500
Query: 60 E 60
E
Sbjct: 501 E 501
>gi|321473431|gb|EFX84398.1| hypothetical protein DAPPUDRAFT_194355 [Daphnia pulex]
Length = 509
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 55
+ DLEED +RQN+NIYK ++ + + D + P+ITL+EMLDDL I D
Sbjct: 445 LEDLEEDPAFRQNINIYKDERKV---GFAVEVGEPDEEIPQITLQEMLDDLHIGD 496
>gi|426342766|ref|XP_004038005.1| PREDICTED: 60S ribosomal export protein NMD3 [Gorilla gorilla
gorilla]
Length = 493
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 433 LEDLEEDEAIRKNVNIYRDSA-IPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 486
Query: 61 EITS 64
E S
Sbjct: 487 EGAS 490
>gi|156363113|ref|XP_001625892.1| predicted protein [Nematostella vectensis]
gi|156212746|gb|EDO33792.1| predicted protein [Nematostella vectensis]
Length = 428
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVD 57
+ DLEED RQNVNIY +P ++ ED + P+I+L+EML+DL ++D +
Sbjct: 374 LADLEEDKTLRQNVNIYVDRDHMP------ESDAEDEEIPKISLQEMLEDLKLEDAE 424
>gi|393243763|gb|EJD51277.1| RNA binding protein [Auricularia delicata TFB-10046 SS5]
Length = 543
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 15/76 (19%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIP----VDAND--------INTEDEDPDAPRITLEEML 48
+ DLEEDV R VN+YKA P+ P +D +D TE ++PD P + L+E+L
Sbjct: 466 LRDLEEDVEMRAAVNLYKAKPQKPKASAMDVDDAPAPSEDGTGTEADEPDFPDVKLDELL 525
Query: 49 DD---LTIDDVDMEEE 61
+D L IDD + +EE
Sbjct: 526 EDMENLGIDDDEEQEE 541
>gi|224147658|ref|XP_002188713.1| PREDICTED: 60S ribosomal export protein NMD3-like, partial
[Taeniopygia guttata]
Length = 474
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 36/53 (67%), Gaps = 6/53 (11%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 53
+ DLEED R+NVNIY+ +IPV+ ++ +D APRI+L EML+DL I
Sbjct: 417 LEDLEEDEAIRKNVNIYR-NADIPVE-----SDTDDDGAPRISLAEMLEDLHI 463
>gi|339246087|ref|XP_003374677.1| 60S ribosomal export protein Nmd3 [Trichinella spiralis]
gi|316972075|gb|EFV55768.1| 60S ribosomal export protein Nmd3 [Trichinella spiralis]
Length = 593
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 9/63 (14%)
Query: 1 MNDLEEDVLYRQNVNIYK--AGPEIPVDANDINTEDE-DPDAPRITLEEMLDDLTIDDVD 57
+ DLEED + R+ VNIY+ IPV EDE D D P + L+EML DL I+D +
Sbjct: 535 LEDLEEDSVLREKVNIYRDPTKQHIPV------AEDEFDDDLPAVDLQEMLSDLCINDQE 588
Query: 58 MEE 60
M++
Sbjct: 589 MDD 591
>gi|389611415|dbj|BAM19319.1| nonsense-mediated mRNA decay protein [Papilio polytes]
Length = 491
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 5/46 (10%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEE 46
++DLEED +RQN+NI+K +P+D ++I DP PRITL +
Sbjct: 448 LDDLEEDPTFRQNINIFKDASRVPIDTDEI-----DPSLPRITLAD 488
>gi|297286492|ref|XP_001096663.2| PREDICTED: 60S ribosomal export protein NMD3 isoform 2 [Macaca
mulatta]
Length = 503
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 443 LEDLEEDEAIRKNVNIYRDS-TIPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496
Query: 61 EITS 64
E S
Sbjct: 497 EGAS 500
>gi|118095345|ref|XP_422813.2| PREDICTED: 60S ribosomal export protein NMD3 [Gallus gallus]
Length = 504
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 6/55 (10%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 55
+ DLEED R+NVNIY+ +IPV+ ++ +D APRI+L EML+DL I +
Sbjct: 443 LEDLEEDEAIRKNVNIYR-NADIPVE-----SDTDDDGAPRISLAEMLEDLHISE 491
>gi|355559900|gb|EHH16628.1| hypothetical protein EGK_11941 [Macaca mulatta]
Length = 529
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 443 LEDLEEDEAIRKNVNIYRDS-TIPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496
Query: 61 EITS 64
E S
Sbjct: 497 EAKS 500
>gi|431915174|gb|ELK15861.1| 60S ribosomal export protein NMD3 [Pteropus alecto]
Length = 542
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 481 LEDLEEDEAIRKNVNIYRDSA-IPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 534
Query: 61 E 61
E
Sbjct: 535 E 535
>gi|395528258|ref|XP_003766247.1| PREDICTED: 60S ribosomal export protein NMD3 [Sarcophilus harrisii]
Length = 526
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 6/55 (10%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 55
+ DLEED R+NVNIYKA PV++ +T+DE AP+I+L EML+DL I +
Sbjct: 466 LEDLEEDETIRKNVNIYKASTA-PVES---DTDDE--GAPQISLAEMLEDLHISE 514
>gi|449277297|gb|EMC85532.1| 60S ribosomal export protein NMD3, partial [Columba livia]
Length = 489
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 6/55 (10%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 55
+ DLEED R+NVNIY+ +IPV+ ++ +D APRI+L EML+DL I +
Sbjct: 428 LEDLEEDEAIRKNVNIYR-NADIPVE-----SDTDDDGAPRISLAEMLEDLHISE 476
>gi|410971102|ref|XP_003992012.1| PREDICTED: 60S ribosomal export protein NMD3 [Felis catus]
Length = 691
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 630 LEDLEEDEAIRKNVNIYRDS-TIPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 683
Query: 61 E 61
E
Sbjct: 684 E 684
>gi|397521152|ref|XP_003830666.1| PREDICTED: 60S ribosomal export protein NMD3 [Pan paniscus]
Length = 503
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 443 LEDLEEDEAIRKNVNIYRDSA-IPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496
Query: 61 EITS 64
E S
Sbjct: 497 EGAS 500
>gi|194222558|ref|XP_001493978.2| PREDICTED: 60S ribosomal export protein NMD3 [Equus caballus]
Length = 503
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 11/68 (16%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVN+Y+ IPV+++ T+DE APRI+L EML+DL I +
Sbjct: 443 LEDLEEDEAIRKNVNVYRDS-TIPVESD---TDDEG--APRISLAEMLEDLHI-----SQ 491
Query: 61 EITSDQGD 68
+ T ++GD
Sbjct: 492 DATGEEGD 499
>gi|119599024|gb|EAW78618.1| NMD3 homolog (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|119599025|gb|EAW78619.1| NMD3 homolog (S. cerevisiae), isoform CRA_a [Homo sapiens]
Length = 503
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 443 LEDLEEDEAIRKNVNIYRDSA-IPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496
Query: 61 EITS 64
E S
Sbjct: 497 EGAS 500
>gi|114590191|ref|XP_516854.2| PREDICTED: 60S ribosomal export protein NMD3 [Pan troglodytes]
gi|410333631|gb|JAA35762.1| NMD3 homolog [Pan troglodytes]
Length = 503
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 443 LEDLEEDEAIRKNVNIYRDSA-IPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496
Query: 61 EITS 64
E S
Sbjct: 497 EGAS 500
>gi|410209362|gb|JAA01900.1| NMD3 homolog [Pan troglodytes]
gi|410266978|gb|JAA21455.1| NMD3 homolog [Pan troglodytes]
gi|410304762|gb|JAA30981.1| NMD3 homolog [Pan troglodytes]
Length = 503
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 443 LEDLEEDEAIRKNVNIYRDSA-IPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496
Query: 61 EITS 64
E S
Sbjct: 497 EGAS 500
>gi|224060929|ref|XP_002198571.1| PREDICTED: 60S ribosomal export protein NMD3-like [Taeniopygia
guttata]
Length = 504
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 36/53 (67%), Gaps = 6/53 (11%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 53
+ DLEED R+NVNIY+ +IPV+ ++ +D APRI+L EML+DL I
Sbjct: 443 LEDLEEDEAIRKNVNIYR-NADIPVE-----SDTDDDGAPRISLAEMLEDLHI 489
>gi|193787720|dbj|BAG52923.1| unnamed protein product [Homo sapiens]
Length = 503
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 443 LEDLEEDEAIRKNVNIYRDSA-IPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496
Query: 61 EITS 64
E S
Sbjct: 497 EGAS 500
>gi|4680653|gb|AAD27716.1|AF132941_1 CGI-07 protein [Homo sapiens]
Length = 503
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 443 LEDLEEDEAIRKNVNIYRDSA-IPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496
Query: 61 EITS 64
E S
Sbjct: 497 EGAS 500
>gi|19923796|ref|NP_057022.2| 60S ribosomal export protein NMD3 [Homo sapiens]
gi|74731412|sp|Q96D46.1|NMD3_HUMAN RecName: Full=60S ribosomal export protein NMD3; Short=hNMD3
gi|15426434|gb|AAH13317.1| NMD3 homolog (S. cerevisiae) [Homo sapiens]
gi|190690621|gb|ACE87085.1| NMD3 homolog (S. cerevisiae) protein [synthetic construct]
gi|190691981|gb|ACE87765.1| NMD3 homolog (S. cerevisiae) protein [synthetic construct]
Length = 503
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 443 LEDLEEDEAIRKNVNIYRDSA-IPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496
Query: 61 EITS 64
E S
Sbjct: 497 EGAS 500
>gi|332214638|ref|XP_003256441.1| PREDICTED: 60S ribosomal export protein NMD3 [Nomascus leucogenys]
Length = 503
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 443 LEDLEEDEAIRKNVNIYRDSA-IPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496
Query: 61 EITS 64
E S
Sbjct: 497 EGAS 500
>gi|197101775|ref|NP_001127311.1| 60S ribosomal export protein NMD3 [Pongo abelii]
gi|75056728|sp|Q5RC82.1|NMD3_PONAB RecName: Full=60S ribosomal export protein NMD3
gi|55727749|emb|CAH90625.1| hypothetical protein [Pongo abelii]
Length = 503
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 443 LEDLEEDEAIRKNVNIYRDSA-IPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496
Query: 61 EITS 64
E S
Sbjct: 497 EGAS 500
>gi|380785895|gb|AFE64823.1| 60S ribosomal export protein NMD3 [Macaca mulatta]
gi|383408481|gb|AFH27454.1| 60S ribosomal export protein NMD3 [Macaca mulatta]
gi|384941278|gb|AFI34244.1| 60S ribosomal export protein NMD3 [Macaca mulatta]
Length = 503
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 443 LEDLEEDEAIRKNVNIYRDS-TIPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496
Query: 61 EITS 64
E S
Sbjct: 497 EGAS 500
>gi|402861061|ref|XP_003894927.1| PREDICTED: 60S ribosomal export protein NMD3 [Papio anubis]
Length = 503
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 443 LEDLEEDEAIRKNVNIYRDS-TIPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496
Query: 61 EITS 64
E S
Sbjct: 497 EGAS 500
>gi|383408479|gb|AFH27453.1| 60S ribosomal export protein NMD3 [Macaca mulatta]
Length = 503
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 443 LEDLEEDEAIRKNVNIYRDS-TIPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496
Query: 61 EITS 64
E S
Sbjct: 497 EGAS 500
>gi|291400106|ref|XP_002716402.1| PREDICTED: NMD3 homolog [Oryctolagus cuniculus]
Length = 503
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 443 LEDLEEDEAIRKNVNIYRDS-TIPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496
Query: 61 EITS 64
E S
Sbjct: 497 EGAS 500
>gi|443730657|gb|ELU16081.1| hypothetical protein CAPTEDRAFT_174567 [Capitella teleta]
Length = 510
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED RQ +NIYK +I V+ E ++ DAP+I+L EM++DL I + E
Sbjct: 447 LEDLEEDPASRQQINIYKDEAKIAVEP---EYESDNEDAPQISLMEMMEDLKISEDATGE 503
Query: 61 E 61
E
Sbjct: 504 E 504
>gi|345796501|ref|XP_545261.3| PREDICTED: 60S ribosomal export protein NMD3 [Canis lupus
familiaris]
Length = 504
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 443 LEDLEEDEAIRKNVNIYRDS-TIPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496
Query: 61 E 61
E
Sbjct: 497 E 497
>gi|410909840|ref|XP_003968398.1| PREDICTED: 60S ribosomal export protein NMD3-like [Takifugu
rubripes]
Length = 504
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 38/55 (69%), Gaps = 5/55 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 55
+ DLEED R+N+NI++ +IPV+ ++ +D AP+I+L EML++L++ D
Sbjct: 443 LEDLEEDEALRKNINIFRDASKIPVE-----SDTDDDGAPQISLAEMLEELSLMD 492
>gi|432117229|gb|ELK37659.1| 60S ribosomal export protein NMD3 [Myotis davidii]
Length = 503
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 443 LEDLEEDEAIRKNVNIYRDS-TIPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496
Query: 61 EITS 64
E S
Sbjct: 497 EGAS 500
>gi|296227669|ref|XP_002759470.1| PREDICTED: 60S ribosomal export protein NMD3 [Callithrix jacchus]
Length = 503
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 6/53 (11%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 53
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I
Sbjct: 443 LEDLEEDETIRKNVNIYRDSA-IPVESD---TDDEG--APRISLAEMLEDLHI 489
>gi|170054763|ref|XP_001863278.1| nonsense-mediated mRNA decay protein [Culex quinquefasciatus]
gi|167874965|gb|EDS38348.1| nonsense-mediated mRNA decay protein [Culex quinquefasciatus]
Length = 438
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 27/38 (71%), Gaps = 4/38 (10%)
Query: 23 IPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+PVD ND+ DP PRI LEE+LDD+ +DDV+M +
Sbjct: 404 MPVDVNDM----ADPSGPRINLEELLDDMVLDDVEMSD 437
>gi|395843852|ref|XP_003794686.1| PREDICTED: 60S ribosomal export protein NMD3 [Otolemur garnettii]
Length = 504
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 6/53 (11%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 53
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I
Sbjct: 443 LEDLEEDEAIRKNVNIYRDS-TIPVESD---TDDEG--APRISLAEMLEDLHI 489
>gi|355707455|gb|AES02963.1| NMD3-like protein [Mustela putorius furo]
Length = 503
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 443 LEDLEEDEAIRKNVNIYRDS-TIPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496
Query: 61 E 61
E
Sbjct: 497 E 497
>gi|432890080|ref|XP_004075417.1| PREDICTED: 60S ribosomal export protein NMD3-like [Oryzias latipes]
Length = 504
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%), Gaps = 5/55 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 55
+ DLEED R+NVNIY+ +IPV+ ++ +D APRI+L EML++L++ D
Sbjct: 443 LEDLEEDEALRRNVNIYRDVAKIPVE-----SDTDDDGAPRISLVEMLEELSLSD 492
>gi|326926160|ref|XP_003209272.1| PREDICTED: 60S ribosomal export protein NMD3-like [Meleagris
gallopavo]
Length = 504
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 6/55 (10%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 55
+ DLEED R+N+NIY+ ++PV+ ++ +D APRI+L EML+DL I +
Sbjct: 443 LEDLEEDEAIRKNINIYR-NVDVPVE-----SDTDDDGAPRISLSEMLEDLHISE 491
>gi|351712585|gb|EHB15504.1| 60S ribosomal export protein NMD3, partial [Heterocephalus glaber]
Length = 497
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 6/53 (11%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 53
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I
Sbjct: 443 LEDLEEDEAIRKNVNIYRDS-TIPVESD---TDDEG--APRISLAEMLEDLHI 489
>gi|149048326|gb|EDM00902.1| rCG62699, isoform CRA_a [Rattus norvegicus]
Length = 525
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ +PV+++ T+DE APRI+L EML+DL I E
Sbjct: 465 LEDLEEDETIRKNVNIYRDS-TVPVESD---TDDEG--APRISLAEMLEDLRISQDATGE 518
Query: 61 EITS 64
E S
Sbjct: 519 EGAS 522
>gi|157818501|ref|NP_001101152.1| 60S ribosomal export protein NMD3 [Rattus norvegicus]
gi|149048327|gb|EDM00903.1| rCG62699, isoform CRA_b [Rattus norvegicus]
gi|171846766|gb|AAI61998.1| Nmd3 protein [Rattus norvegicus]
Length = 503
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ +PV+++ T+DE APRI+L EML+DL I E
Sbjct: 443 LEDLEEDETIRKNVNIYRDS-TVPVESD---TDDEG--APRISLAEMLEDLRISQDATGE 496
Query: 61 EITS 64
E S
Sbjct: 497 EGAS 500
>gi|354482257|ref|XP_003503315.1| PREDICTED: 60S ribosomal export protein NMD3 [Cricetulus griseus]
Length = 516
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ +PV+++ T+DE APRI+L EML+DL I E
Sbjct: 456 LEDLEEDEAIRKNVNIYRDS-TVPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 509
Query: 61 EITS 64
E S
Sbjct: 510 EGAS 513
>gi|340373689|ref|XP_003385373.1| PREDICTED: 60S ribosomal export protein NMD3-like [Amphimedon
queenslandica]
Length = 504
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPE--IPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 55
M DLEED YRQ++NIY + +PV+ + E+E+ P+I +EEML +LTI D
Sbjct: 443 MEDLEEDKTYRQDINIYMKPNDGVVPVENGGLTGEEEEESYPQIGVEEMLQNLTISD 499
>gi|350591686|ref|XP_003483312.1| PREDICTED: 60S ribosomal export protein NMD3-like [Sus scrofa]
Length = 73
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 38/53 (71%), Gaps = 6/53 (11%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 53
+ DLEED R+NVNIY+ P IPV+++ T+DE APRI+L EML+DL I
Sbjct: 13 LEDLEEDEAIRKNVNIYR-DPTIPVESD---TDDEG--APRISLAEMLEDLHI 59
>gi|148683547|gb|EDL15494.1| NMD3 homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
Length = 559
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R++VNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 499 LEDLEEDEAIRKHVNIYRDA-TIPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 552
Query: 61 EITS 64
E S
Sbjct: 553 EGAS 556
>gi|387017328|gb|AFJ50782.1| 60S ribosomal export protein NMD3-like [Crotalus adamanteus]
Length = 504
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 6/55 (10%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 55
+ DLEED R+NVNIYK P +PV++ DI +D P+I+L EML+DL I +
Sbjct: 443 LEDLEEDETIRKNVNIYK-NPVVPVES-DI----DDDSIPQISLTEMLEDLQISE 491
>gi|61806709|ref|NP_001013587.1| 60S ribosomal export protein NMD3 [Danio rerio]
gi|82178735|sp|Q5BLF0.1|NMD3_DANRE RecName: Full=60S ribosomal export protein NMD3
gi|60649637|gb|AAH90467.1| NMD3 homolog (S. cerevisiae) [Danio rerio]
Length = 505
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 4/47 (8%)
Query: 9 LYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 55
+ R+N+NI++ +IPV+ +D +D APRI+L EML+DL++ D
Sbjct: 451 MLRKNINIFRDASKIPVEESDT----DDDGAPRISLAEMLEDLSLSD 493
>gi|324508962|gb|ADY43779.1| 60S ribosomal export protein NMD3 [Ascaris suum]
Length = 504
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 29/61 (47%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTID-DVDME 59
M DLEED R+ VNIYKA +P D N+ D P +L EMLDDL I+ DV+M
Sbjct: 446 MEDLEEDEQMREKVNIYKARERVPPIDEDDNSVDLPPGP---SLAEMLDDLDINADVEMA 502
Query: 60 E 60
+
Sbjct: 503 D 503
>gi|344307154|ref|XP_003422247.1| PREDICTED: 60S ribosomal export protein NMD3-like [Loxodonta
africana]
Length = 504
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+N+NIY+ IPV+ + +D APRI+L EML+DL I E
Sbjct: 443 LEDLEEDEAIRKNINIYRDS-TIPVEG-----DADDEGAPRISLAEMLEDLHISQDATGE 496
Query: 61 EITS 64
E S
Sbjct: 497 EGAS 500
>gi|149414089|ref|XP_001507475.1| PREDICTED: 60S ribosomal export protein NMD3-like, partial
[Ornithorhynchus anatinus]
Length = 164
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 38/53 (71%), Gaps = 6/53 (11%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 53
+ DLEED R+NVNIYK E+PV+++ T+DE APRI+L EML+DL I
Sbjct: 104 LEDLEEDEAIRRNVNIYK-NLEVPVESD---TDDEG--APRISLAEMLEDLHI 150
>gi|198435795|ref|XP_002120179.1| PREDICTED: similar to nmd3 homolog (s. cerevisiae) [Ciona
intestinalis]
Length = 498
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 9/62 (14%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI-DDVDME 59
+ DLEED +R+N++IY G D+ + ++ + P ++L+EML DL+I DDV+M+
Sbjct: 444 LEDLEEDKEFRKNIDIYIDG--------DVPSSADETEFPSVSLQEMLQDLSIKDDVEMD 495
Query: 60 EE 61
E
Sbjct: 496 GE 497
>gi|440912375|gb|ELR61947.1| 60S ribosomal export protein NMD3 [Bos grunniens mutus]
Length = 503
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 6/53 (11%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 53
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I
Sbjct: 443 LEDLEEDEAIRKNVNIYRDS-TIPVESD---TDDEG--APRISLAEMLEDLHI 489
>gi|426218020|ref|XP_004003248.1| PREDICTED: 60S ribosomal export protein NMD3 [Ovis aries]
Length = 503
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 6/53 (11%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 53
+ DLEED R+NVNIY+ IPV+++ T+DE APR++L EML+DL I
Sbjct: 443 LEDLEEDEAIRKNVNIYRDS-TIPVESD---TDDEG--APRVSLAEMLEDLHI 489
>gi|115495387|ref|NP_001068888.1| 60S ribosomal export protein NMD3 [Bos taurus]
gi|122132352|sp|Q08DS5.1|NMD3_BOVIN RecName: Full=60S ribosomal export protein NMD3
gi|115305166|gb|AAI23589.1| NMD3 homolog (S. cerevisiae) [Bos taurus]
gi|296491130|tpg|DAA33203.1| TPA: 60S ribosomal export protein NMD3 [Bos taurus]
Length = 503
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 6/53 (11%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 53
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I
Sbjct: 443 LEDLEEDEAIRKNVNIYRDS-TIPVESD---TDDEG--APRISLAEMLEDLHI 489
>gi|82186247|sp|Q6P2Z6.1|NMD3_XENTR RecName: Full=60S ribosomal export protein NMD3
gi|39849988|gb|AAH64238.1| 60S ribosomal export protein NMD3 [Xenopus (Silurana) tropicalis]
gi|51703739|gb|AAH81303.1| 60S ribosomal export protein NMD3 [Xenopus (Silurana) tropicalis]
Length = 504
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 38/53 (71%), Gaps = 6/53 (11%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 53
+ DLEED + R+NVNIYK +PV++ +T++E APRI+L EML+DL I
Sbjct: 443 LEDLEEDEVIRKNVNIYK-NANLPVES---DTDEE--GAPRISLAEMLEDLHI 489
>gi|348534719|ref|XP_003454849.1| PREDICTED: 60S ribosomal export protein NMD3-like [Oreochromis
niloticus]
Length = 504
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 37/55 (67%), Gaps = 5/55 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 55
+ DLEED R+NVNI++ +IPV+ ++ +D AP ++L EML++L++ D
Sbjct: 443 LEDLEEDEALRKNVNIFRDASKIPVE-----SDTDDDGAPCVSLAEMLEELSLTD 492
>gi|89886075|ref|NP_989367.2| 60S ribosomal export protein NMD3 [Xenopus (Silurana) tropicalis]
gi|89268245|emb|CAJ82727.1| nmd3 homolog (s. cerevisiae) [Xenopus (Silurana) tropicalis]
Length = 504
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 38/53 (71%), Gaps = 6/53 (11%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 53
+ DLEED + R+NVNIYK +PV++ +T++E APRI+L EML+DL I
Sbjct: 443 LEDLEEDEVIRKNVNIYK-NANLPVES---DTDEE--GAPRISLAEMLEDLHI 489
>gi|19526940|ref|NP_598548.1| 60S ribosomal export protein NMD3 [Mus musculus]
gi|81903129|sp|Q99L48.1|NMD3_MOUSE RecName: Full=60S ribosomal export protein NMD3
gi|13277951|gb|AAH03842.1| NMD3 homolog (S. cerevisiae) [Mus musculus]
gi|26353722|dbj|BAC40491.1| unnamed protein product [Mus musculus]
gi|74147592|dbj|BAE38680.1| unnamed protein product [Mus musculus]
gi|74208223|dbj|BAE26326.1| unnamed protein product [Mus musculus]
gi|148683546|gb|EDL15493.1| NMD3 homolog (S. cerevisiae), isoform CRA_a [Mus musculus]
Length = 503
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R++VNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 443 LEDLEEDEAIRKHVNIYRDA-TIPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496
Query: 61 EITS 64
E S
Sbjct: 497 EGAS 500
>gi|281344425|gb|EFB20009.1| hypothetical protein PANDA_021824 [Ailuropoda melanoleuca]
Length = 488
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T++E APRI+L EML+DL I E
Sbjct: 428 LEDLEEDEAIRKNVNIYRDA-TIPVESD---TDEEG--APRISLAEMLEDLHISQDATGE 481
Query: 61 E 61
E
Sbjct: 482 E 482
>gi|241958934|ref|XP_002422186.1| 60S ribosomal export protein NMD3 [Candida dubliniensis CD36]
gi|223645531|emb|CAX40190.1| large ribosomal subunit nuclear export factor, putative [Candida
dubliniensis CD36]
Length = 519
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 7/65 (10%)
Query: 1 MNDLEEDVLYRQNVNIYKAG---PEIPVDANDIN-TEDEDPDAPRITLEEM---LDDLTI 53
+ +LEED RQ +N+YKAG P++ + +D+N E++D DAP I ++E+ LDD+T+
Sbjct: 454 LQELEEDDELRQTINLYKAGDNQPQVSRNHDDMNDGEEDDEDAPEIGIDELLDELDDMTL 513
Query: 54 DDVDM 58
DD M
Sbjct: 514 DDTPM 518
>gi|193785612|dbj|BAG51047.1| unnamed protein product [Homo sapiens]
Length = 383
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+ ++ +D APRI+L EML+DL I E
Sbjct: 323 LEDLEEDEAIRKNVNIYRDSA-IPVE-----SDTDDEGAPRISLAEMLEDLHISQDATGE 376
Query: 61 EITS 64
E S
Sbjct: 377 EGAS 380
>gi|327266844|ref|XP_003218214.1| PREDICTED: 60S ribosomal export protein NMD3-like [Anolis
carolinensis]
Length = 504
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 28/53 (52%), Positives = 36/53 (67%), Gaps = 6/53 (11%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 53
+ DLEED R+NVNIYK IPV++ +T+DE PRI+L EML+DL I
Sbjct: 443 LEDLEEDETIRKNVNIYK-NSGIPVES---DTDDE--GIPRISLAEMLEDLQI 489
>gi|301792240|ref|XP_002931087.1| PREDICTED: 60S ribosomal export protein NMD3-like [Ailuropoda
melanoleuca]
Length = 504
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T++E APRI+L EML+DL I E
Sbjct: 443 LEDLEEDEAIRKNVNIYRDA-TIPVESD---TDEEG--APRISLAEMLEDLHISQDATGE 496
Query: 61 E 61
E
Sbjct: 497 E 497
>gi|444705851|gb|ELW47238.1| 60S ribosomal export protein NMD3 [Tupaia chinensis]
Length = 360
Score = 43.1 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+ ++ +D APRI+L EML+DL I E
Sbjct: 300 LEDLEEDEAIRKNVNIYRDS-SIPVE-----SDTDDEGAPRISLAEMLEDLHISQDATGE 353
Query: 61 EITS 64
E S
Sbjct: 354 EGAS 357
>gi|268562890|ref|XP_002638695.1| Hypothetical protein CBG11892 [Caenorhabditis briggsae]
Length = 513
Score = 43.1 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
M D+EED L R+ +NIYK + P D + +D+ P+AP +L EML+DL DD +M+E
Sbjct: 446 MEDIEEDALMREKINIYKDAEKAP--NVDGDDDDDHPEAP--SLAEMLEDLKFDDEEMKE 501
Query: 61 EITS 64
S
Sbjct: 502 AAES 505
>gi|344245933|gb|EGW02037.1| Histone H3.3 [Cricetulus griseus]
Length = 365
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ +PV+ ++ +D APRI+L EML+DL I E
Sbjct: 305 LEDLEEDEAIRKNVNIYRDS-TVPVE-----SDTDDEGAPRISLAEMLEDLHISQDATGE 358
Query: 61 EITS 64
E S
Sbjct: 359 EGAS 362
>gi|349602939|gb|AEP98922.1| 60S ribosomal export protein NMD3-like protein, partial [Equus
caballus]
Length = 185
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 11/68 (16%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVN+Y+ IPV+++ T+DE APRI+L EML+DL I +
Sbjct: 125 LEDLEEDEAIRKNVNVYRDST-IPVESD---TDDEG--APRISLAEMLEDLHI-----SQ 173
Query: 61 EITSDQGD 68
+ T ++GD
Sbjct: 174 DATGEEGD 181
>gi|194383890|dbj|BAG59303.1| unnamed protein product [Homo sapiens]
Length = 323
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 6/54 (11%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTID 54
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I
Sbjct: 263 LEDLEEDEAIRKNVNIYRDSA-IPVESD---TDDEG--APRISLAEMLEDLHIS 310
>gi|67967886|dbj|BAE00425.1| unnamed protein product [Macaca fascicularis]
Length = 323
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 6/54 (11%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTID 54
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I
Sbjct: 263 LEDLEEDEAIRKNVNIYRDST-IPVESD---TDDEG--APRISLAEMLEDLHIS 310
>gi|115908403|ref|XP_788633.2| PREDICTED: 60S ribosomal export protein NMD3 [Strongylocentrotus
purpuratus]
Length = 513
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 9/55 (16%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVD-ANDINTEDEDPD-APRITLEEMLDDLTI 53
+ DLEED YR+N+NIY VD + +I E D D AP+I+L+EML+D I
Sbjct: 448 LEDLEEDGDYRKNINIY-------VDRSKNIAVESSDEDAAPQISLQEMLEDFHI 495
>gi|302772306|ref|XP_002969571.1| hypothetical protein SELMODRAFT_91517 [Selaginella moellendorffii]
gi|300163047|gb|EFJ29659.1| hypothetical protein SELMODRAFT_91517 [Selaginella moellendorffii]
Length = 516
Score = 42.0 bits (97), Expect = 0.050, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 53
M +LEED R + ++K + V A+ I EDED + P++ LEE+L DLT+
Sbjct: 450 MEELEEDPEMRSKIALFKN--PVAVAASSIAGEDEDGELPQVPLEELLGDLTL 500
>gi|344303871|gb|EGW34120.1| nonsense-mediated mRNA decay protein 3 [Spathaspora passalidarum
NRRL Y-27907]
Length = 516
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Query: 11 RQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEM---LDDLTIDDVDMEE 60
RQ +N+YKAG PV ++ + ++ED DAP I ++E+ LDD+T++D MEE
Sbjct: 464 RQTINLYKAGENAPVKSHGDDEDEEDEDAPEIGIDELLDELDDMTLEDTPMEE 516
>gi|302774853|ref|XP_002970843.1| hypothetical protein SELMODRAFT_94368 [Selaginella moellendorffii]
gi|300161554|gb|EFJ28169.1| hypothetical protein SELMODRAFT_94368 [Selaginella moellendorffii]
Length = 516
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 53
M +LEED R + ++K + V A I EDED + P++ LEE+L DLT+
Sbjct: 450 MEELEEDPEMRSKIALFKN--PVAVAAPSIAGEDEDGELPQVPLEELLGDLTL 500
>gi|26330198|dbj|BAC28829.1| unnamed protein product [Mus musculus]
Length = 263
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 6/54 (11%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTID 54
+ DLEED R++VNIY+ IPV+++ T+DE APRI+L EML+DL I
Sbjct: 203 LEDLEEDEAIRKHVNIYRDAT-IPVESD---TDDEG--APRISLAEMLEDLHIS 250
>gi|366992630|ref|XP_003676080.1| hypothetical protein NCAS_0D01360 [Naumovozyma castellii CBS 4309]
gi|342301946|emb|CCC69717.1| hypothetical protein NCAS_0D01360 [Naumovozyma castellii CBS 4309]
Length = 521
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDL---TIDD 55
+ +LEED RQ +N+YK P EDEDPDAP+I ++E+LD+L T+DD
Sbjct: 452 LQELEEDDEMRQTINLYKNNAPAPAPQPHEIEEDEDPDAPQIDIDELLDELDEMTLDD 509
>gi|407420941|gb|EKF38750.1| hypothetical protein MOQ_001039 [Trypanosoma cruzi marinkellei]
Length = 535
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 9/68 (13%)
Query: 2 NDLEEDVLYRQNVNIYKA-----GPEIPVDAND---INTE-DEDPDAPRITLEEMLDDLT 52
+DLE D +R++V IYK + ND + E DE+ + P+I LEEMLD+L
Sbjct: 452 DDLERDAEFRRDVPIYKLSEFELAQRAVTNGNDYMEVEEEGDENDEVPQIALEEMLDELR 511
Query: 53 IDDVDMEE 60
I+D ++E
Sbjct: 512 IEDDTLDE 519
>gi|331243536|ref|XP_003334411.1| nonsense-mediated mRNA decay protein 3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|403161984|ref|XP_003322268.2| nonsense-mediated mRNA decay protein 3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309313401|gb|EFP89992.1| nonsense-mediated mRNA decay protein 3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375172013|gb|EFP77849.2| nonsense-mediated mRNA decay protein 3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 553
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 12/63 (19%)
Query: 1 MNDLEEDVLYRQNVNIYKAGP---EIPVDANDI---------NTEDEDPDAPRITLEEML 48
+ DLEED RQNV ++KA P ++P DA D+ TE +D D P+I L+E+L
Sbjct: 468 LRDLEEDPELRQNVQLFKAQPASKKLPADAMDLEGADTESVAETEMDDDDFPKIQLDELL 527
Query: 49 DDL 51
D++
Sbjct: 528 DEM 530
>gi|449678782|ref|XP_004209161.1| PREDICTED: 60S ribosomal export protein NMD3-like [Hydra
magnipapillata]
Length = 488
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 6/52 (11%)
Query: 10 YRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEEE 61
YR +NIY+ ++ +D++ DAP+I+LEEM+DDL I+D ME +
Sbjct: 439 YRMGLNIYRDRSKVSQSESDLD------DAPQISLEEMMDDLQIEDHPMESD 484
>gi|125982920|ref|XP_001355225.1| GA17465 [Drosophila pseudoobscura pseudoobscura]
gi|195168912|ref|XP_002025274.1| GL13399 [Drosophila persimilis]
gi|54643539|gb|EAL32282.1| GA17465 [Drosophila pseudoobscura pseudoobscura]
gi|194108730|gb|EDW30773.1| GL13399 [Drosophila persimilis]
Length = 523
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Query: 1 MNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVD 57
++DLEE+V R VNIY+ +P++ + D P+ITLEEML+D+T++ D
Sbjct: 455 LDDLEENVDMRGQVNIYRDTNKTLPIE-----VQGATGDVPQITLEEMLEDMTLECAD 507
>gi|255721895|ref|XP_002545882.1| nonsense-mediated mRNA decay protein 3 [Candida tropicalis
MYA-3404]
gi|240136371|gb|EER35924.1| nonsense-mediated mRNA decay protein 3 [Candida tropicalis
MYA-3404]
Length = 516
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 11 RQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEM---LDDLTIDDVDMEE 60
RQ +N+YKAG E P D +++D DAP I ++E+ LDD+T+DD M E
Sbjct: 464 RQTINLYKAGEEAPRKEVDEMDDEDDEDAPEIAIDELLDELDDMTLDDTPMNE 516
>gi|195347866|ref|XP_002040472.1| GM18910 [Drosophila sechellia]
gi|194121900|gb|EDW43943.1| GM18910 [Drosophila sechellia]
Length = 517
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Query: 1 MNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVD 57
++DLEE+ R VNIY+ IP++A + D P+ITLEEML+D+T++ D
Sbjct: 449 LDDLEENEDIRGQVNIYRDTNKTIPIEA-----QAAGGDVPQITLEEMLEDMTLECAD 501
>gi|195059016|ref|XP_001995545.1| GH17705 [Drosophila grimshawi]
gi|193896331|gb|EDV95197.1| GH17705 [Drosophila grimshawi]
Length = 525
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 1 MNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVD 57
++D+EE+V R +N+Y+ + IPVD + + D P+ITL EML+D+T++ D
Sbjct: 453 LDDIEENVEIRGQINVYRDSKKTIPVD-----VQPDGADLPQITLAEMLEDMTLECAD 505
>gi|384248530|gb|EIE22014.1| NMD3-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 540
Score = 38.1 bits (87), Expect = 0.73, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDIN----TEDEDPDAPRITLEEMLDDL 51
M +LEED R + +Y+ PV + T+DED D P + LEE+LDDL
Sbjct: 464 MQELEEDPELRAKMALYRDPAYNPVAEAERRAAAMTDDEDGDVPEVPLEELLDDL 518
>gi|195477750|ref|XP_002100295.1| GE16971 [Drosophila yakuba]
gi|194187819|gb|EDX01403.1| GE16971 [Drosophila yakuba]
Length = 521
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 1 MNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVD-- 57
++DLEE+ R VNIY+ IP++ + D P+ITLEEML+D+T++ D
Sbjct: 453 LDDLEENEDIRGQVNIYRDTNKTIPIE-----VQAAGGDVPQITLEEMLEDMTLECADDE 507
Query: 58 MEEEITSDQ 66
M EE +D+
Sbjct: 508 MGEEGGADE 516
>gi|328871042|gb|EGG19414.1| 60S ribosomal export protein [Dictyostelium fasciculatum]
Length = 526
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTED----EDPDAPRITLEEMLDDLTIDDV 56
+ ++EED R +NIYK G + I + ED + +TLEE+LD++ I+D
Sbjct: 438 VREIEEDADMRSKINIYKQGNAAEILKQRIKHKKDSGYEDHEINEVTLEELLDEMDINDQ 497
Query: 57 DMEE 60
D E
Sbjct: 498 DFGE 501
>gi|4753704|emb|CAB42049.1| Nmd3 protein [Drosophila melanogaster]
Length = 521
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 8/68 (11%)
Query: 1 MNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVD-- 57
++DLEE+ R VNIY+ IP++ + D P+ITLEEML+D+T++ D
Sbjct: 453 LDDLEENEDIRGQVNIYRDTNKTIPIE-----VQAAGGDVPQITLEEMLEDMTLECADDE 507
Query: 58 MEEEITSD 65
M EE +D
Sbjct: 508 MGEEGGAD 515
>gi|17137506|ref|NP_477332.1| Nonsense-mediated mRNA 3 [Drosophila melanogaster]
gi|2894111|emb|CAA15695.1| EG:152A3.1 [Drosophila melanogaster]
gi|7290283|gb|AAF45744.1| Nonsense-mediated mRNA 3 [Drosophila melanogaster]
gi|16197917|gb|AAL13723.1| GM14705p [Drosophila melanogaster]
gi|220944802|gb|ACL84944.1| Nmd3-PA [synthetic construct]
gi|220954642|gb|ACL89864.1| Nmd3-PA [synthetic construct]
Length = 521
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 8/68 (11%)
Query: 1 MNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVD-- 57
++DLEE+ R VNIY+ IP++ + D P+ITLEEML+D+T++ D
Sbjct: 453 LDDLEENEDIRGQVNIYRDTNKTIPIE-----VQAAGGDVPQITLEEMLEDMTLECADDE 507
Query: 58 MEEEITSD 65
M EE +D
Sbjct: 508 MGEEGGAD 515
>gi|156844183|ref|XP_001645155.1| hypothetical protein Kpol_1062p4 [Vanderwaltozyma polyspora DSM
70294]
gi|156115813|gb|EDO17297.1| hypothetical protein Kpol_1062p4 [Vanderwaltozyma polyspora DSM
70294]
Length = 522
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 4/58 (6%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDL---TIDD 55
+ +LEED RQ VN+YK+ ++ + + EDED DAP+I ++E+LD+L T+DD
Sbjct: 456 LQELEEDQELRQTVNLYKSSNPENIEEHGME-EDEDEDAPQIDIDELLDELDEMTLDD 512
>gi|225710644|gb|ACO11168.1| 60S ribosomal export protein NMD3 [Caligus rogercresseyi]
Length = 514
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 7/56 (12%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPE--IPVDANDINTEDEDPDAPRITLEEMLDDLTID 54
+ D+EEDV R+++NIYK + IPVD +++D + P ++L EML+ +++
Sbjct: 447 LEDIEEDVELRKHINIYKDPKKLSIPVD-----QDEDDTEIPGVSLAEMLESFSLN 497
>gi|194913036|ref|XP_001982614.1| GG12643 [Drosophila erecta]
gi|190648290|gb|EDV45583.1| GG12643 [Drosophila erecta]
Length = 521
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 1 MNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVD 57
++DLEE+ R VNIY+ IP++ + D P+ITLEEML+D+T++ D
Sbjct: 453 LDDLEENEDIRGQVNIYRDTNKTIPIE-----LQAAGGDVPQITLEEMLEDMTLECAD 505
>gi|402587812|gb|EJW81746.1| NMD3 family protein [Wuchereria bancrofti]
Length = 480
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTID-DVDM 58
+ DLEED RQ +NIY+ + V + DI + + P P +L EMLDDL ++ DV+M
Sbjct: 425 LEDLEEDEQMRQKINIYRDNAKQLVYSKDIAS--DLPPGP--SLHEMLDDLDLNADVEM 479
>gi|328863106|gb|EGG12206.1| hypothetical protein MELLADRAFT_46699 [Melampsora larici-populina
98AG31]
Length = 549
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 12/63 (19%)
Query: 1 MNDLEEDVLYRQNVNIYKAGP----------EIPVDAND-INTE-DEDPDAPRITLEEML 48
+ DLEED RQNV ++KA P EI DA + TE DED D P+I L+E+L
Sbjct: 466 LRDLEEDPELRQNVQLFKAEPKQKKMAIDSMEIEGDAESVVETEMDEDDDFPKIQLDELL 525
Query: 49 DDL 51
D++
Sbjct: 526 DEM 528
>gi|384497741|gb|EIE88232.1| hypothetical protein RO3G_12943 [Rhizopus delemar RA 99-880]
Length = 481
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTED-EDPDAPRITLEEMLDDLTID 54
M D+EED +R N+NI+K+ +D D + P I+LEEMLD++ I
Sbjct: 410 MRDIEEDPEFRANINIFKSQQNNAAVQQQEEVQDMSDEELPEISLEEMLDEMAIH 464
>gi|170062484|ref|XP_001866689.1| NMD protein [Culex quinquefasciatus]
gi|167880370|gb|EDS43753.1| NMD protein [Culex quinquefasciatus]
Length = 348
Score = 35.4 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPE---IPVDANDINTEDEDPDAPRITLE 45
+ DLEED RQNV+I+K +PVD ND DP PRITLE
Sbjct: 236 LEDLEEDPEMRQNVDIFKDAARQQSVPVDVND----KADPSVPRITLE 279
>gi|385304926|gb|EIF48926.1| putative 60s ribosomal subunit nuclear export factor nmd3 [Dekkera
bruxellensis AWRI1499]
Length = 516
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTED-EDPDAPRITLEEMLDDL 51
+ DLEED RQ+VN+YKA + D ED DAP + ++E+LD+L
Sbjct: 458 LEDLEEDKELRQSVNMYKANDTTNAXXSSAPXSDSEDSDAPEVNVDELLDEL 509
>gi|325181410|emb|CCA15826.1| 60S ribosomal export protein NMD3 putative [Albugo laibachii Nc14]
Length = 526
Score = 35.4 bits (80), Expect = 4.6, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDP--DAPRITLEEMLDDLTIDDVDM 58
+++LE+D R +NIYK E A D + D+D A I L EMLDDLT +
Sbjct: 449 LDELEDDQAMRGQINIYKEQAE----AQDSSQPDDDEGMQASSIPLSEMLDDLTFEKKSS 504
Query: 59 E 59
E
Sbjct: 505 E 505
>gi|365984817|ref|XP_003669241.1| hypothetical protein NDAI_0C03380 [Naumovozyma dairenensis CBS 421]
gi|343768009|emb|CCD23998.1| hypothetical protein NDAI_0C03380 [Naumovozyma dairenensis CBS 421]
Length = 538
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINT----EDEDPDAPRITLEEMLDDL---TI 53
+ +LEED RQ +N+YK EDEDPDAP+I ++E+LD+L T+
Sbjct: 464 LQELEEDEEMRQTINLYKNNEAAAAAQIAAAANGMEEDEDPDAPQIDIDELLDELDEMTL 523
Query: 54 DD 55
DD
Sbjct: 524 DD 525
>gi|320536307|ref|ZP_08036350.1| V-type ATPase subunit family protein [Treponema phagedenis F0421]
gi|320146867|gb|EFW38440.1| V-type ATPase subunit family protein [Treponema phagedenis F0421]
Length = 621
Score = 35.4 bits (80), Expect = 4.9, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 21 PEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEEEITS 64
P++P+D D E E P LEE+ DDLT+ D+EE++ S
Sbjct: 171 PKLPIDLPDDVQELEMPAVAVSELEEIRDDLTVRISDIEEKLAS 214
>gi|444318629|ref|XP_004179972.1| hypothetical protein TBLA_0C06600 [Tetrapisispora blattae CBS 6284]
gi|387513013|emb|CCH60453.1| hypothetical protein TBLA_0C06600 [Tetrapisispora blattae CBS 6284]
Length = 525
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDI--NTEDE-DPDAPRITLEEMLDDLTIDDVD 57
+ +LEED RQ++N+YK+ + N +DE D DAP I ++E+LD+L DD+
Sbjct: 457 LQELEEDAELRQSINLYKSNKPAANQGTETAQNEQDEQDADAPEINIDELLDEL--DDMT 514
Query: 58 ME 59
+E
Sbjct: 515 LE 516
>gi|363752964|ref|XP_003646698.1| hypothetical protein Ecym_5097 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890334|gb|AET39881.1| hypothetical protein Ecym_5097 [Eremothecium cymbalariae
DBVPG#7215]
Length = 509
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 6/63 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDL---TIDDVD 57
+ +LEED RQ +N+YK + PV ++ + ED DAP+I ++E+LD+L T+DD+
Sbjct: 450 LQELEEDEEMRQTINLYKN--QKPVQEEEM-ADSEDEDAPQINIDELLDELDEMTLDDLT 506
Query: 58 MEE 60
E
Sbjct: 507 TAE 509
>gi|260945473|ref|XP_002617034.1| hypothetical protein CLUG_02478 [Clavispora lusitaniae ATCC 42720]
gi|238848888|gb|EEQ38352.1| hypothetical protein CLUG_02478 [Clavispora lusitaniae ATCC 42720]
Length = 506
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDL 51
+ +LEED R+ +N+YKAG E P DA+D + D+D AP I ++E+LD++
Sbjct: 450 LQELEEDQELRKTINLYKAGEEAPQDADDEDEMDDDEVAPEIGIDELLDEI 500
>gi|302675617|ref|XP_003027492.1| 60S ribosomal export protein NMD3 [Schizophyllum commune H4-8]
gi|300101179|gb|EFI92589.1| hypothetical protein SCHCODRAFT_70539 [Schizophyllum commune H4-8]
Length = 558
Score = 34.7 bits (78), Expect = 6.5, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 26/84 (30%)
Query: 1 MNDLEEDVLYRQNVNIYKAGP----------------------EIPVDANDINTEDED-P 37
+ +LEED R VN+YKAG E+ DI TE ED P
Sbjct: 470 LRELEEDPELRATVNLYKAGDVKMSDGAARPAGAGKKRAQFAMEVDEAGQDIETEAEDEP 529
Query: 38 DAPRITLEEML---DDLTIDDVDM 58
D P + L+E+L D++T+++ D+
Sbjct: 530 DFPDVKLDELLEGFDEMTLNENDV 553
>gi|154339277|ref|XP_001562330.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062913|emb|CAM39360.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 563
Score = 34.7 bits (78), Expect = 6.5, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 13/78 (16%)
Query: 2 NDLEEDVLYRQNVNIYK---------AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLT 52
+++E D R++V IY+ GP + ++D + P I LEEMLD+L
Sbjct: 469 DEIERDAELRKDVAIYRMMDKEIEARGGPIAAAADAAEDEYEDDDEVPEIALEEMLDELQ 528
Query: 53 IDD----VDMEEEITSDQ 66
IDD D+EE + +D+
Sbjct: 529 IDDGVEPADVEESLMTDE 546
>gi|384495175|gb|EIE85666.1| hypothetical protein RO3G_10376 [Rhizopus delemar RA 99-880]
Length = 478
Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTED-EDPDAPRITLEEMLDDLTID 54
M D+EED +R N+NI+K V ++ ED D + P I+LEEMLD++ I
Sbjct: 411 MRDIEEDPEFRANINIFKNEGNNAVHPEEV--EDMSDEELPEISLEEMLDEMAIH 463
>gi|340054441|emb|CCC48737.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 545
Score = 34.7 bits (78), Expect = 7.0, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 27 ANDINTEDED--PDAPRITLEEMLDDLTIDDVDMEEEITSDQG 67
A D + ED+D D P+++LEEML++L I+D +E +D G
Sbjct: 490 AGDASPEDDDYGEDIPQVSLEEMLNELRIEDEVFDETDENDDG 532
>gi|146414748|ref|XP_001483344.1| histone acetyltransferase GCN5 [Meyerozyma guilliermondii ATCC
6260]
Length = 658
Score = 34.3 bits (77), Expect = 9.4, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 11 RQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDL 51
RQ VN+YKA P A + D+D +AP + L+E+LD++
Sbjct: 616 RQTVNMYKA----PTQAQFESDMDDDDEAPEVGLDELLDEM 652
>gi|190347658|gb|EDK39975.2| histone acetyltransferase GCN5 [Meyerozyma guilliermondii ATCC
6260]
Length = 658
Score = 34.3 bits (77), Expect = 9.6, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 11 RQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDL 51
RQ VN+YKA P A + D+D +AP + L+E+LD++
Sbjct: 616 RQTVNMYKA----PTQAQFESDMDDDDEAPEVGLDELLDEM 652
>gi|430813858|emb|CCJ28843.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 527
Score = 34.3 bits (77), Expect = 10.0, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDA---PRITLEEM 47
+ DLEED+ R+NVN+YK NTED+ D+ P I + E+
Sbjct: 478 LQDLEEDIELRRNVNLYKTKMNCQKTFMATNTEDDVSDSEEFPEIDVSEL 527
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.307 0.134 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,203,900,013
Number of Sequences: 23463169
Number of extensions: 46468911
Number of successful extensions: 98583
Number of sequences better than 100.0: 299
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 246
Number of HSP's that attempted gapping in prelim test: 98268
Number of HSP's gapped (non-prelim): 311
length of query: 68
length of database: 8,064,228,071
effective HSP length: 40
effective length of query: 28
effective length of database: 7,125,701,311
effective search space: 199519636708
effective search space used: 199519636708
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 69 (31.2 bits)