BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13018
(68 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RC82|NMD3_PONAB 60S ribosomal export protein NMD3 OS=Pongo abelii GN=NMD3 PE=2 SV=1
Length = 503
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 443 LEDLEEDEAIRKNVNIYRDSA-IPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496
Query: 61 EITS 64
E S
Sbjct: 497 EGAS 500
>sp|Q96D46|NMD3_HUMAN 60S ribosomal export protein NMD3 OS=Homo sapiens GN=NMD3 PE=1 SV=1
Length = 503
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 443 LEDLEEDEAIRKNVNIYRDSA-IPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496
Query: 61 EITS 64
E S
Sbjct: 497 EGAS 500
>sp|Q5BLF0|NMD3_DANRE 60S ribosomal export protein NMD3 OS=Danio rerio GN=nmd3 PE=2 SV=1
Length = 505
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 4/47 (8%)
Query: 9 LYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 55
+ R+N+NI++ +IPV+ +D +D APRI+L EML+DL++ D
Sbjct: 451 MLRKNINIFRDASKIPVEESDT----DDDGAPRISLAEMLEDLSLSD 493
>sp|Q08DS5|NMD3_BOVIN 60S ribosomal export protein NMD3 OS=Bos taurus GN=NMD3 PE=2 SV=1
Length = 503
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 6/53 (11%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 53
+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I
Sbjct: 443 LEDLEEDEAIRKNVNIYRDS-TIPVESD---TDDEG--APRISLAEMLEDLHI 489
>sp|Q6P2Z6|NMD3_XENTR 60S ribosomal export protein NMD3 OS=Xenopus tropicalis GN=nmd3
PE=2 SV=1
Length = 504
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 38/53 (71%), Gaps = 6/53 (11%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 53
+ DLEED + R+NVNIYK +PV++ +T++E APRI+L EML+DL I
Sbjct: 443 LEDLEEDEVIRKNVNIYK-NANLPVES---DTDEE--GAPRISLAEMLEDLHI 489
>sp|Q99L48|NMD3_MOUSE 60S ribosomal export protein NMD3 OS=Mus musculus GN=Nmd3 PE=2 SV=1
Length = 503
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
+ DLEED R++VNIY+ IPV+++ T+DE APRI+L EML+DL I E
Sbjct: 443 LEDLEEDEAIRKHVNIYRDA-TIPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496
Query: 61 EITS 64
E S
Sbjct: 497 EGAS 500
>sp|Q6GNS3|NMD3_XENLA 60S ribosomal export protein NMD3 OS=Xenopus laevis GN=nmd3 PE=2
SV=1
Length = 504
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 6/53 (11%)
Query: 9 LYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEEE 61
L R+NVNI+K +PV++ +T++E APRI+L EML+DL I EE
Sbjct: 451 LLRKNVNIFK-NANVPVES---DTDEE--GAPRISLAEMLEDLHISQDATGEE 497
>sp|B9IXC7|ARGB_BACCQ Acetylglutamate kinase OS=Bacillus cereus (strain Q1) GN=argB
PE=3 SV=1
Length = 255
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 1 MNDLEEDVLYR-----QNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLD 49
+NDL D + + + V ++ GPEI D N E D R+T +E++D
Sbjct: 17 LNDLFFDCIKKLQQKYKVVIVHGGGPEIDAQLKDCNINAEKRDGLRVTPKEVMD 70
>sp|B7HNP7|ARGB_BACC7 Acetylglutamate kinase OS=Bacillus cereus (strain AH187) GN=argB
PE=3 SV=1
Length = 255
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 1 MNDLEEDVLYR-----QNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLD 49
+NDL D + + + V ++ GPEI D N E D R+T +E++D
Sbjct: 17 LNDLFFDCIKKLQQKYKVVIVHGGGPEIDAQLKDCNINAEKRDGLRVTPKEVMD 70
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.134 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,447,231
Number of Sequences: 539616
Number of extensions: 1155863
Number of successful extensions: 2397
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2365
Number of HSP's gapped (non-prelim): 37
length of query: 68
length of database: 191,569,459
effective HSP length: 40
effective length of query: 28
effective length of database: 169,984,819
effective search space: 4759574932
effective search space used: 4759574932
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)