Query psy13018
Match_columns 68
No_of_seqs 104 out of 180
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 17:16:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13018.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13018hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2613|consensus 99.4 2E-13 4.4E-18 106.1 2.4 57 1-62 439-495 (502)
2 PF02526 GBP_repeat: Glycophor 58.7 4.7 0.0001 22.0 0.7 14 5-18 14-27 (38)
3 PF08880 QLQ: QLQ; InterPro: 30.9 20 0.00043 19.2 0.3 11 8-18 9-19 (37)
4 PF07862 Nif11: Nitrogen fixat 25.2 25 0.00054 18.9 0.1 20 2-21 11-30 (49)
5 PF05361 PP1_inhibitor: PKC-ac 23.6 46 0.00099 22.9 1.2 13 37-49 68-81 (144)
6 PRK11832 putative DNA-binding 14.2 82 0.0018 22.6 0.7 14 5-18 151-164 (207)
7 PF04220 YihI: Der GTPase acti 14.0 79 0.0017 22.2 0.6 16 44-59 138-153 (169)
8 COG0278 Glutaredoxin-related p 12.9 1.1E+02 0.0023 20.2 0.9 19 3-21 52-70 (105)
9 TIGR03798 ocin_TIGR03798 bacte 11.7 81 0.0018 17.9 0.1 20 2-21 9-28 (64)
10 COG3078 Uncharacterized protei 11.3 1.4E+02 0.0029 21.2 1.1 15 44-58 138-152 (169)
No 1
>KOG2613|consensus
Probab=99.37 E-value=2e-13 Score=106.14 Aligned_cols=57 Identities=39% Similarity=0.601 Sum_probs=44.4
Q ss_pred CccchhCHHHHHhcccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHhhccCCCCCccchhhh
Q psy13018 1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEEEI 62 (68)
Q Consensus 1 L~dLEED~ElR~~inlYK~~~~~~~~~~~~~~~~~d~d~P~I~LdELLDdl~l~d~~~~ee~ 62 (68)
|++||||++||++|||||++.+.+. .+.++++++|+|+|+|||++|++...++++.|
T Consensus 439 ledlEEd~elr~~vnlyrd~~~~~~-----~d~d~~ed~p~i~ldElLedl~~~~~e~~~~~ 495 (502)
T KOG2613|consen 439 LEDLEEDPELRQGVNLYRDKEKPTE-----SDTDDAEDAPQITLDELLEDLKLSFEEDDEDG 495 (502)
T ss_pred HHhhhcCHHHHhcceeeeccCCCCc-----cccccccCCCCCCHHHHHhhhhcchhhcccCC
Confidence 6899999999999999999887322 22233488999999999999987765554443
No 2
>PF02526 GBP_repeat: Glycophorin-binding protein; InterPro: IPR003681 The glycophorin-binding protein contains a tandem repeat. The repeated sequence determines the binding domain for an erythrocyte receptor binding protein of Plasmodium falciparum, the malarial parasite []. Erythrocyte invasion by the malarial merozoite is a receptor-mediated process, an obligatory step in the development of the parasite. The P. falciparum protein binds to the erythrocyte receptor glycophorin.
Probab=58.73 E-value=4.7 Score=22.00 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=11.6
Q ss_pred hhCHHHHHhccccc
Q psy13018 5 EEDVLYRQNVNIYK 18 (68)
Q Consensus 5 EED~ElR~~inlYK 18 (68)
-.||++|+.+|++-
T Consensus 14 aadpeyrkh~~v~y 27 (38)
T PF02526_consen 14 AADPEYRKHLNVLY 27 (38)
T ss_pred hcCHHHHHHHHHHH
Confidence 46999999999764
No 3
>PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif. QLQ is found at the N terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions []. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=30.87 E-value=20 Score=19.15 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=9.9
Q ss_pred HHHHHhccccc
Q psy13018 8 VLYRQNVNIYK 18 (68)
Q Consensus 8 ~ElR~~inlYK 18 (68)
.+||++|.+||
T Consensus 9 ~~L~~Qi~ayK 19 (37)
T PF08880_consen 9 QELRAQILAYK 19 (37)
T ss_pred HHHHHHHHHHH
Confidence 47999999999
No 4
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=25.20 E-value=25 Score=18.88 Aligned_cols=20 Identities=10% Similarity=0.205 Sum_probs=15.4
Q ss_pred ccchhCHHHHHhcccccCCC
Q psy13018 2 NDLEEDVLYRQNVNIYKAGP 21 (68)
Q Consensus 2 ~dLEED~ElR~~inlYK~~~ 21 (68)
..+..||.||.+++-.+++.
T Consensus 11 ~~~~~d~~l~~~l~~~~~~~ 30 (49)
T PF07862_consen 11 EKVKSDPELREQLKACQNPE 30 (49)
T ss_pred HHHhcCHHHHHHHHhcCCHH
Confidence 45678999999998776543
No 5
>PF05361 PP1_inhibitor: PKC-activated protein phosphatase-1 inhibitor; InterPro: IPR008025 Contractility of vascular smooth muscle depends on phosphorylation of myosin light chains, and is modulated by hormonal control of myosin phosphatase activity. Signaling pathways activate kinases such as PKC or Rho-dependent kinases that phosphorylate the myosin phosphatase inhibitor protein called CPI-17. Phosphorylation of CPI-17 at Thr-38 enhances its inhibitory potency 1000-fold, creating a molecular switch for regulating contraction [].; GO: 0042325 regulation of phosphorylation, 0005737 cytoplasm; PDB: 2RLT_A 1J2M_A 1K5O_A 1J2N_A.
Probab=23.61 E-value=46 Score=22.93 Aligned_cols=13 Identities=38% Similarity=0.869 Sum_probs=9.7
Q ss_pred CCCC-CCCHHHhhc
Q psy13018 37 PDAP-RITLEEMLD 49 (68)
Q Consensus 37 ~d~P-~I~LdELLD 49 (68)
+++| .|+|++|||
T Consensus 68 ~~~p~EIDIDeLLD 81 (144)
T PF05361_consen 68 DEMPEEIDIDELLD 81 (144)
T ss_dssp TTS-SSSHHHHHHC
T ss_pred CCCCCcccHHHHhc
Confidence 4555 799999997
No 6
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=14.16 E-value=82 Score=22.55 Aligned_cols=14 Identities=7% Similarity=0.200 Sum_probs=12.5
Q ss_pred hhCHHHHHhccccc
Q psy13018 5 EEDVLYRQNVNIYK 18 (68)
Q Consensus 5 EED~ElR~~inlYK 18 (68)
++++++|.+||+|+
T Consensus 151 ~~~e~~R~~I~v~~ 164 (207)
T PRK11832 151 DWNEELRSRIGVMN 164 (207)
T ss_pred hCCHHHHhhccHHH
Confidence 57899999999996
No 7
>PF04220 YihI: Der GTPase activator (YihI); InterPro: IPR007336 This entry contains Escherichia coli (strain K12) YihI. YihI activates the GTPase activity of Der, a 50S ribosomal subunit stability factor and can therefore be considered a GAP (GTPase activating)-like protein. The stimulation is specific to Der as YihI does not stimulate the GTPase activity of Era or ObgE. The interaction of YihI with Der requires only the C-terminal 78 amino acids of YihI []. A yihI deletion mutant is viable and shows a shorter lag period, but the same post-lag growth rate as a wild-type strain. yihI is expressed during the lag period. Overexpression of yihI inhibits cell growth and biogenesis of the 50S ribosomal subunit []. YihI is an unusual, highly hydrophilic protein with an uneven distribution of charged residues, resulting in an N-terminal region with high pI and a C-terminal region with low pI [].
Probab=14.04 E-value=79 Score=22.15 Aligned_cols=16 Identities=38% Similarity=0.767 Sum_probs=10.6
Q ss_pred HHHhhccCCCCCccch
Q psy13018 44 LEEMLDDLTIDDVDME 59 (68)
Q Consensus 44 LdELLDdl~l~d~~~~ 59 (68)
+++|+..|+|.++++.
T Consensus 138 i~~Lm~~LGi~~ddd~ 153 (169)
T PF04220_consen 138 IEELMEELGIEDDDDD 153 (169)
T ss_pred HHHHHHHhCCCccccc
Confidence 5567777778765554
No 8
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=12.91 E-value=1.1e+02 Score=20.19 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=14.9
Q ss_pred cchhCHHHHHhcccccCCC
Q psy13018 3 DLEEDVLYRQNVNIYKAGP 21 (68)
Q Consensus 3 dLEED~ElR~~inlYK~~~ 21 (68)
++..|+++|+.|--|-+=-
T Consensus 52 nVL~d~eiR~~lk~~s~WP 70 (105)
T COG0278 52 DVLQDPEIRQGLKEYSNWP 70 (105)
T ss_pred eeccCHHHHhccHhhcCCC
Confidence 4568999999998886543
No 9
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=11.69 E-value=81 Score=17.89 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=14.7
Q ss_pred ccchhCHHHHHhcccccCCC
Q psy13018 2 NDLEEDVLYRQNVNIYKAGP 21 (68)
Q Consensus 2 ~dLEED~ElR~~inlYK~~~ 21 (68)
+.+..||.||.++.=..++.
T Consensus 9 ~~~~~d~~L~~~l~~~~~~e 28 (64)
T TIGR03798 9 EKVKTDPDLREKLKAAEDPE 28 (64)
T ss_pred HHHHcCHHHHHHHHHcCCHH
Confidence 45678999999997765433
No 10
>COG3078 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=11.32 E-value=1.4e+02 Score=21.15 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=10.2
Q ss_pred HHHhhccCCCCCccc
Q psy13018 44 LEEMLDDLTIDDVDM 58 (68)
Q Consensus 44 LdELLDdl~l~d~~~ 58 (68)
+++|++.|+|.+++.
T Consensus 138 I~~LMe~LGl~~ddd 152 (169)
T COG3078 138 IDELMEKLGLSYDDD 152 (169)
T ss_pred HHHHHHHhCCccCCc
Confidence 567777777775554
Done!