Query psy13018
Match_columns 68
No_of_seqs 104 out of 180
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 17:16:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hfr_A Fowlicidin-3, cathelici 34.6 11 0.00036 18.5 0.4 10 11-20 15-24 (27)
2 1j2m_A CPI-17, 17-kDa PKC-pote 22.7 36 0.0012 21.2 1.4 9 41-49 53-61 (99)
3 2amn_A Cathelicidin; linear he 14.8 30 0.001 16.8 -0.3 9 11-19 14-22 (26)
4 1jmu_A Protein MU-1; protein-p 13.1 57 0.002 17.3 0.5 28 11-44 7-35 (41)
5 2iay_A Hypothetical protein; s 12.4 39 0.0013 21.5 -0.3 11 12-22 81-91 (114)
6 1q0v_A Hydrophilic protein; ha 10.3 92 0.0032 18.6 0.9 11 5-15 53-63 (81)
7 4a9a_C Translation machinery-a 10.3 1.3E+02 0.0043 19.7 1.6 15 36-50 11-25 (142)
8 1ncq_D Coat protein VP4; HRV, 8.5 88 0.003 18.2 0.3 10 12-21 27-36 (68)
9 1aym_4 HRV16, human rhinovirus 7.5 88 0.003 18.2 -0.0 10 13-22 28-37 (68)
10 1hxs_4 Genome polyprotein, coa 7.2 95 0.0032 18.1 0.0 9 13-21 28-36 (68)
No 1
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=34.55 E-value=11 Score=18.48 Aligned_cols=10 Identities=40% Similarity=0.607 Sum_probs=7.7
Q ss_pred HHhcccccCC
Q psy13018 11 RQNVNIYKAG 20 (68)
Q Consensus 11 R~~inlYK~~ 20 (68)
.+.|||||+-
T Consensus 15 aaginlykai 24 (27)
T 2hfr_A 15 AAGINLYKAI 24 (27)
T ss_dssp HHHHTSTTTT
T ss_pred ehhhhHHHHH
Confidence 4679999963
No 2
>1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix bundle, protein binding; NMR {Sus scrofa} SCOP: a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A
Probab=22.65 E-value=36 Score=21.17 Aligned_cols=9 Identities=22% Similarity=0.837 Sum_probs=8.2
Q ss_pred CCCHHHhhc
Q psy13018 41 RITLEEMLD 49 (68)
Q Consensus 41 ~I~LdELLD 49 (68)
.|++++|||
T Consensus 53 eIDiDeLLD 61 (99)
T 1j2m_A 53 EVNIDELLE 61 (99)
T ss_dssp SCCSHHHHC
T ss_pred ccCHHHHhc
Confidence 899999997
No 3
>2amn_A Cathelicidin; linear helix, antimicrobial protein; NMR {Synthetic}
Probab=14.84 E-value=30 Score=16.78 Aligned_cols=9 Identities=33% Similarity=0.600 Sum_probs=6.6
Q ss_pred HHhcccccC
Q psy13018 11 RQNVNIYKA 19 (68)
Q Consensus 11 R~~inlYK~ 19 (68)
-+.+||||+
T Consensus 14 ~ag~nly~a 22 (26)
T 2amn_A 14 IAGYNLYRA 22 (26)
T ss_dssp HHHHSSSHH
T ss_pred eehhHHHHH
Confidence 357899984
No 4
>1jmu_A Protein MU-1; protein-protein complex, jelly roll, zinc finger, viral protein; HET: BOG; 2.80A {Reovirus SP} SCOP: e.35.1.1
Probab=13.06 E-value=57 Score=17.34 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=15.5
Q ss_pred HHhcccccCCCC-CCCCCCCCCCCCCCCCCCCCCH
Q psy13018 11 RQNVNIYKAGPE-IPVDANDINTEDEDPDAPRITL 44 (68)
Q Consensus 11 R~~inlYK~~~~-~~~~~~~~~~~~~d~d~P~I~L 44 (68)
-+++|||-+.+. .|..++. -...|+|.|
T Consensus 7 vq~~nI~GdGN~F~p~a~~~------ssA~P~l~L 35 (41)
T 1jmu_A 7 VQTINVTGDGNVFKPSAETS------STAVPSLSL 35 (41)
T ss_dssp --CBCTTSSSCEECCBGGGC------CCCBCCCCC
T ss_pred EEEEEEeCCCceeCcccccc------cccCcceec
Confidence 367888888776 4432111 245677765
No 5
>2iay_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, translation; HET: MSE; 1.20A {Lactobacillus plantarum} SCOP: d.376.1.1
Probab=12.38 E-value=39 Score=21.49 Aligned_cols=11 Identities=36% Similarity=0.598 Sum_probs=8.4
Q ss_pred HhcccccCCCC
Q psy13018 12 QNVNIYKAGPE 22 (68)
Q Consensus 12 ~~inlYK~~~~ 22 (68)
+.|||||++..
T Consensus 81 ~~VNIFK~~~~ 91 (114)
T 2iay_A 81 QRANIFKNDAH 91 (114)
T ss_dssp SBCCSCGGGCC
T ss_pred EEEecccCccc
Confidence 46999998753
No 6
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=10.35 E-value=92 Score=18.59 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=9.4
Q ss_pred hhCHHHHHhcc
Q psy13018 5 EEDVLYRQNVN 15 (68)
Q Consensus 5 EED~ElR~~in 15 (68)
++|++|++.|.
T Consensus 53 deD~DLKAAIa 63 (81)
T 1q0v_A 53 EEDPDLKAAIQ 63 (81)
T ss_dssp CSCHHHHHHHH
T ss_pred ccCHHHHHHHH
Confidence 67999999885
No 7
>4a9a_C Translation machinery-associated protein 46; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=10.26 E-value=1.3e+02 Score=19.71 Aligned_cols=15 Identities=40% Similarity=0.687 Sum_probs=11.9
Q ss_pred CCCCCCCCHHHhhcc
Q psy13018 36 DPDAPRITLEEMLDD 50 (68)
Q Consensus 36 d~d~P~I~LdELLDd 50 (68)
.+..|+|+|+|+|..
T Consensus 11 ~e~~~~ItlEe~iE~ 25 (142)
T 4a9a_C 11 LEKQPKITLEEFIET 25 (142)
T ss_dssp CCSCCCCCHHHHHHT
T ss_pred HhcCCcCcHHHHHHH
Confidence 355799999999863
No 8
>1ncq_D Coat protein VP4; HRV, pleconaril, icosahedral virus; HET: W11; 2.50A {Human rhinovirus 14} SCOP: b.121.4.1 PDB: 1d3i_4* 1hrv_4* 1hri_4* 1na1_D* 1k5m_D* 1r08_4* 1r09_4* 1rmu_4 1ruc_4* 1rud_4* 1rue_4* 1ruf_4 1rug_4* 1ruh_4* 1rui_4* 1ruj_4 1rvf_4 1vrh_4* 2hwb_4* 2hwc_4* ...
Probab=8.49 E-value=88 Score=18.22 Aligned_cols=10 Identities=30% Similarity=0.517 Sum_probs=6.4
Q ss_pred HhcccccCCC
Q psy13018 12 QNVNIYKAGP 21 (68)
Q Consensus 12 ~~inlYK~~~ 21 (68)
-|||-||+..
T Consensus 27 tnINYYkdaa 36 (68)
T 1ncq_D 27 TVINYYKDAA 36 (68)
T ss_dssp --CCCSSSGG
T ss_pred eeeeeccchh
Confidence 4899999654
No 9
>1aym_4 HRV16, human rhinovirus 16 coat protein; RNA, site-directed mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A {Human rhinovirus SP} SCOP: b.121.4.1 PDB: 1ayn_4* 1d3e_4 1ncr_D* 1nd2_D* 1qju_4* 1qjx_4* 1qjy_4* 1nd3_D* 1fpn_4* 1v9u_4* 3dpr_D* 1r1a_4* 2hwd_4* 2hwe_4* 2hwf_4*
Probab=7.52 E-value=88 Score=18.22 Aligned_cols=10 Identities=30% Similarity=0.634 Sum_probs=7.5
Q ss_pred hcccccCCCC
Q psy13018 13 NVNIYKAGPE 22 (68)
Q Consensus 13 ~inlYK~~~~ 22 (68)
|||-||+...
T Consensus 28 nINYYkdaas 37 (68)
T 1aym_4 28 NINYFKDAAS 37 (68)
T ss_dssp EECCSSSGGG
T ss_pred eeeeccchhh
Confidence 7999996543
No 10
>1hxs_4 Genome polyprotein, coat protein VP4; picornavirus, AB initio phase DETE icosahedral virus; HET: MYR PLM; 2.20A {Human poliovirus 1} SCOP: b.121.4.1 PDB: 1ar6_4* 1ar7_4* 1ar8_4* 1ar9_4* 1asj_4* 1al2_4* 1nn8_4 1po1_4* 1po2_4* 1vbd_4* 2plv_4* 3epc_4* 1eah_4* 3epf_4* 1pvc_4* 1piv_4* 1vba_4* 1vbb_4* 1vbc_4* 1vbe_4* ...
Probab=7.18 E-value=95 Score=18.07 Aligned_cols=9 Identities=22% Similarity=0.652 Sum_probs=7.1
Q ss_pred hcccccCCC
Q psy13018 13 NVNIYKAGP 21 (68)
Q Consensus 13 ~inlYK~~~ 21 (68)
|||-||+..
T Consensus 28 nINYYkdaa 36 (68)
T 1hxs_4 28 TINYYRDSA 36 (68)
T ss_dssp ECCCCSSGG
T ss_pred eeeeccchh
Confidence 799999654
Done!