Query psy13018
Match_columns 68
No_of_seqs 104 out of 180
Neff 4.6
Searched_HMMs 13730
Date Fri Aug 16 17:16:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13018.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13018hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j2na_ a.165.1.1 (A:) Myosin 23.5 20 0.0015 20.8 1.9 10 40-49 52-61 (99)
2 d2evra1 b.34.11.3 (A:13-86) Ce 12.8 15 0.0011 20.3 -0.6 12 11-22 8-19 (74)
3 d1d8ja_ a.4.5.18 (A:) The cent 11.5 34 0.0025 19.2 0.7 15 40-54 30-44 (81)
4 d1huwa_ a.26.1.1 (A:) Growth h 11.4 42 0.0031 20.6 1.2 12 39-50 1-12 (191)
5 d2cu3a1 d.15.3.2 (A:1-63) Unch 9.2 55 0.004 16.5 1.0 16 39-54 11-26 (63)
6 d1xp8a2 d.48.1.1 (A:283-341) R 8.0 64 0.0047 16.6 1.0 11 4-14 40-50 (59)
7 d2iaya1 d.376.1.1 (A:1-113) Hy 7.3 37 0.0027 20.1 -0.3 11 12-22 80-90 (113)
8 d1u94a2 d.48.1.1 (A:269-328) R 6.5 81 0.0059 16.1 0.9 11 4-14 41-51 (60)
9 d1tygb_ d.15.3.2 (B:) Thiamin 6.5 1E+02 0.0074 15.3 1.3 14 41-54 15-28 (65)
10 d1guua_ a.4.1.3 (A:) c-Myb, DN 5.8 87 0.0063 14.8 0.7 17 4-20 6-22 (50)
No 1
>d1j2na_ a.165.1.1 (A:) Myosin phosphatase inhibitor 17kDa protein, CPI-17 {Pig (Sus scrofa) [TaxId: 9823]}
Probab=23.46 E-value=20 Score=20.80 Aligned_cols=10 Identities=20% Similarity=0.730 Sum_probs=8.5
Q ss_pred CCCCHHHhhc
Q psy13018 40 PRITLEEMLD 49 (68)
Q Consensus 40 P~I~LdELLD 49 (68)
+.|++++|||
T Consensus 52 ~EIDiDeLLd 61 (99)
T d1j2na_ 52 DEVNIDELLE 61 (99)
T ss_dssp SCCCHHHHTC
T ss_pred CccCHHHHHc
Confidence 3899999986
No 2
>d2evra1 b.34.11.3 (A:13-86) Cell wall-associated hydrolase Spr N-terminal domain {Nostoc punctiforme [TaxId: 272131]}
Probab=12.76 E-value=15 Score=20.30 Aligned_cols=12 Identities=8% Similarity=0.274 Sum_probs=9.3
Q ss_pred HHhcccccCCCC
Q psy13018 11 RQNVNIYKAGPE 22 (68)
Q Consensus 11 R~~inlYK~~~~ 22 (68)
+++||+|+++.-
T Consensus 8 ~~~ln~Y~s~~~ 19 (74)
T d2evra1 8 LADLNLFDSPEC 19 (74)
T ss_dssp SSCEEEESSTTC
T ss_pred EecccCccCCcc
Confidence 578999997763
No 3
>d1d8ja_ a.4.5.18 (A:) The central core domain of TFIIE beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.51 E-value=34 Score=19.18 Aligned_cols=15 Identities=33% Similarity=0.446 Sum_probs=11.4
Q ss_pred CCCCHHHhhccCCCC
Q psy13018 40 PRITLEEMLDDLTID 54 (68)
Q Consensus 40 P~I~LdELLDdl~l~ 54 (68)
-.++|+|+||+..+-
T Consensus 30 hPLtLeEiLDEt~~~ 44 (81)
T d1d8ja_ 30 HPLTLDEILDETQHL 44 (81)
T ss_dssp SCBCHHHHHHHHTCS
T ss_pred CCccHHHHHHHHhhc
Confidence 357999999987443
No 4
>d1huwa_ a.26.1.1 (A:) Growth hormone, somatotropin {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.43 E-value=42 Score=20.57 Aligned_cols=12 Identities=33% Similarity=0.620 Sum_probs=10.2
Q ss_pred CCCCCHHHhhcc
Q psy13018 39 APRITLEEMLDD 50 (68)
Q Consensus 39 ~P~I~LdELLDd 50 (68)
.|.|+|.+|++.
T Consensus 1 ~p~isL~~Lfd~ 12 (191)
T d1huwa_ 1 FPTIPLSRLADN 12 (191)
T ss_dssp CCCSCHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 589999999875
No 5
>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]}
Probab=9.15 E-value=55 Score=16.50 Aligned_cols=16 Identities=25% Similarity=0.522 Sum_probs=12.9
Q ss_pred CCCCCHHHhhccCCCC
Q psy13018 39 APRITLEEMLDDLTID 54 (68)
Q Consensus 39 ~P~I~LdELLDdl~l~ 54 (68)
++..+|.+||..+++.
T Consensus 11 ~~~~tl~~LL~~l~~~ 26 (63)
T d2cu3a1 11 LEGKTLKEVLEEMGVE 26 (63)
T ss_dssp CTTCCHHHHHHHHTBC
T ss_pred cCCCCHHHHHHHcCCC
Confidence 3567899999998776
No 6
>d1xp8a2 d.48.1.1 (A:283-341) RecA protein, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=8.04 E-value=64 Score=16.57 Aligned_cols=11 Identities=18% Similarity=0.256 Sum_probs=8.5
Q ss_pred chhCHHHHHhc
Q psy13018 4 LEEDVLYRQNV 14 (68)
Q Consensus 4 LEED~ElR~~i 14 (68)
|.++|++++.|
T Consensus 40 L~enpel~~ei 50 (59)
T d1xp8a2 40 IAERPEMEQEI 50 (59)
T ss_dssp HTTCHHHHHHH
T ss_pred HHHCHHHHHHH
Confidence 67888888765
No 7
>d2iaya1 d.376.1.1 (A:1-113) Hypothetical protein Lp2179 {Lactobacillus plantarum [TaxId: 1590]}
Probab=7.34 E-value=37 Score=20.05 Aligned_cols=11 Identities=36% Similarity=0.598 Sum_probs=8.2
Q ss_pred HhcccccCCCC
Q psy13018 12 QNVNIYKAGPE 22 (68)
Q Consensus 12 ~~inlYK~~~~ 22 (68)
+.|||||++..
T Consensus 80 ~~VNIFK~~~~ 90 (113)
T d2iaya1 80 QRANIFKNDAH 90 (113)
T ss_dssp SBCCSCGGGCC
T ss_pred EEEeeccCccc
Confidence 46899997653
No 8
>d1u94a2 d.48.1.1 (A:269-328) RecA protein, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=6.54 E-value=81 Score=16.15 Aligned_cols=11 Identities=9% Similarity=0.259 Sum_probs=8.4
Q ss_pred chhCHHHHHhc
Q psy13018 4 LEEDVLYRQNV 14 (68)
Q Consensus 4 LEED~ElR~~i 14 (68)
|.++|+++..|
T Consensus 41 L~enpel~~ei 51 (60)
T d1u94a2 41 LKDNPETAKEI 51 (60)
T ss_dssp HHHCHHHHHHH
T ss_pred HHHCHHHHHHH
Confidence 67888888766
No 9
>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]}
Probab=6.48 E-value=1e+02 Score=15.33 Aligned_cols=14 Identities=14% Similarity=0.418 Sum_probs=11.6
Q ss_pred CCCHHHhhccCCCC
Q psy13018 41 RITLEEMLDDLTID 54 (68)
Q Consensus 41 ~I~LdELLDdl~l~ 54 (68)
..+|.+||..+.+.
T Consensus 15 ~~tl~~LL~~l~~~ 28 (65)
T d1tygb_ 15 TGTIQDLLASYQLE 28 (65)
T ss_dssp CCBHHHHHHHTTCT
T ss_pred cccHHHHHHHcCCC
Confidence 35899999999776
No 10
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.81 E-value=87 Score=14.80 Aligned_cols=17 Identities=24% Similarity=0.149 Sum_probs=13.7
Q ss_pred chhCHHHHHhcccccCC
Q psy13018 4 LEEDVLYRQNVNIYKAG 20 (68)
Q Consensus 4 LEED~ElR~~inlYK~~ 20 (68)
-+||.-|+.-|+.|...
T Consensus 6 ~eED~~L~~~v~~~g~~ 22 (50)
T d1guua_ 6 REEDEKLKKLVEQNGTD 22 (50)
T ss_dssp HHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 37899999999998643
Done!