RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13018
(68 letters)
>gnl|CDD|215059 PLN00111, PLN00111, accumulation of photosystem one; Provisional.
Length = 399
Score = 26.9 bits (60), Expect = 0.66
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 3 DLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEEEI 62
D+ E R+ IY+ G I ++ D P+ P L LDD I+ EEE+
Sbjct: 204 DIPEYPTKRRTKPIYRIGGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEEEL 263
>gnl|CDD|219573 pfam07781, Reovirus_Mu2, Reovirus minor core protein Mu-2. This
family represents the Reovirus core protein Mu-2. Mu-2
is a microtubule associated protein and is thought to
play a key role in the formation and structural
organisation of reovirus inclusion bodies.
Length = 735
Score = 26.7 bits (59), Expect = 0.84
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 23 IPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 56
P D D+ D P LEE+ LT D+
Sbjct: 29 PPKDLQDVAVYD--PSWLLRQLEEISSGLTASDL 60
>gnl|CDD|147759 pfam05782, ECM1, Extracellular matrix protein 1 (ECM1). This
family consists of several eukaryotic extracellular
matrix protein 1 (ECM1) sequences. ECM1 has been shown
to regulate endochondral bone formation, stimulate the
proliferation of endothelial cells and induce
angiogenesis. Mutations in the ECM1 gene can cause
lipoid proteinosis, a disorder which causes generalised
thickening of skin, mucosae and certain viscera.
Classical features include beaded eyelid papules and
laryngeal infiltration leading to hoarseness.
Length = 419
Score = 25.7 bits (56), Expect = 2.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 5 EEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAP 40
EED N N+ KAGP +P +A + E P P
Sbjct: 92 EEDWPTFLNPNVDKAGPAVPQEAIPLQKELPPPQVP 127
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 25.5 bits (56), Expect = 2.0
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 1 MNDLEEDVL-YRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDME 59
M L++ + + A + ++ + D+D D I E LDD D D +
Sbjct: 223 MKVLKQPKKQAKSSKRRTIAQIDGIDSDDEGDGSDDDDDEDAI--ESDLDDSDDDVSDED 280
Query: 60 EE 61
E
Sbjct: 281 GE 282
>gnl|CDD|224926 COG2015, COG2015, Alkyl sulfatase and related hydrolases [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 655
Score = 24.7 bits (54), Expect = 3.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 39 APRITLEEMLDDLTIDDVDMEEEIT 63
AP +EE + LTID V+ E ++T
Sbjct: 255 APTKIIEETGETLTIDGVEFEFQMT 279
>gnl|CDD|239158 cd02757, MopB_Arsenate-R, This CD includes the respiratory
arsenate reductase, As(V), catalytic subunit (ArrA) and
other related proteins. These members belong to the
molybdopterin_binding (MopB) superfamily of proteins.
Length = 523
Score = 24.7 bits (54), Expect = 4.5
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 34 DEDPDAPRITLEEMLDDLT 52
D DP I+ +E LD +
Sbjct: 71 DVDPKFVPISWDEALDTIA 89
>gnl|CDD|220888 pfam10846, DUF2722, Protein of unknown function (DUF2722). This
eukaryotic family of proteins has no known function.
Length = 373
Score = 24.5 bits (53), Expect = 6.1
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 24 PVDANDINTEDEDPDAPRITLEEMLDDLTIDD 55
P D++ ++E+ P T + DD T +
Sbjct: 315 PPDSDSKERKNEENSDPESTPSDDNDDKTCSE 346
>gnl|CDD|218897 pfam06100, Strep_67kDa_ant, Streptococcal 67 kDa
myosin-cross-reactive antigen like family. Members of
this family are thought to have structural features in
common with the beta chain of the class II antigens, as
well as myosin, and may play an important role in the
pathogenesis.
Length = 500
Score = 23.9 bits (52), Expect = 9.3
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 43 TLEEMLDDLTIDDVDMEEEITSD 65
T EE LDD TIDDV E+ S+
Sbjct: 136 TPEEDLDDKTIDDVFSEDFFNSN 158
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.307 0.134 0.366
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,746,025
Number of extensions: 299016
Number of successful extensions: 228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 28
Length of query: 68
Length of database: 10,937,602
Length adjustment: 39
Effective length of query: 29
Effective length of database: 9,207,796
Effective search space: 267026084
Effective search space used: 267026084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 53 (24.1 bits)