RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13018
         (68 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.1 bits (59), Expect = 0.46
 Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 6/51 (11%)

Query: 7   DVLYRQNVNIYKAGPEIPVDAN------DINTEDEDPDAPRITLEEMLDDL 51
             L  +   + +   E  +  N       I TE   P        E  D L
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119


>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken
           ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A
           {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
          Length = 457

 Score = 24.5 bits (54), Expect = 2.8
 Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 7/35 (20%)

Query: 24  PVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDM 58
           PVD           +    T + +L D    +VDM
Sbjct: 344 PVDM----IASARGEDYYRTAKLLLQD---PNVDM 371


>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant
           protein; 1.40A {Medicago sativa}
          Length = 322

 Score = 23.7 bits (52), Expect = 6.2
 Identities = 6/16 (37%), Positives = 9/16 (56%), Gaps = 1/16 (6%)

Query: 40  PRITLEEMLDDLTIDD 55
            + T+E+M DD  I  
Sbjct: 301 FKYTIEDMFDD-AIQC 315


>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
           reductase, NADPH, dihydroquercetin, rossmann fold,
           oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
           PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
          Length = 337

 Score = 23.4 bits (51), Expect = 6.8
 Identities = 4/16 (25%), Positives = 8/16 (50%), Gaps = 1/16 (6%)

Query: 40  PRITLEEMLDDLTIDD 55
            + +LE+M     +D 
Sbjct: 304 FKYSLEDMFTG-AVDT 318


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.307    0.134    0.366 

Gapped
Lambda     K      H
   0.267   0.0728    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,148,921
Number of extensions: 59933
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 6
Length of query: 68
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 30
Effective length of database: 5,640,795
Effective search space: 169223850
Effective search space used: 169223850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 51 (23.4 bits)