BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13019
(87 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|427789331|gb|JAA60117.1| Putative 60s ribosomal export protein nmd3 [Rhipicephalus
pulchellus]
Length = 511
Score = 81.6 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 42/70 (60%), Positives = 50/70 (71%), Gaps = 5/70 (7%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEML 69
DT+S DY +F+ DLEED YRQNVNIYK +I VD T+DED DAPRITL+EML
Sbjct: 435 DTSSVARDYTDFLEDLEEDAAYRQNVNIYKDNDKIAVD-----TDDEDGDAPRITLQEML 489
Query: 70 DDLTIDDVDM 79
DDL ++D M
Sbjct: 490 DDLQLEDDPM 499
>gi|357604777|gb|EHJ64316.1| nonsense-mediated mRNA 3 [Danaus plexippus]
Length = 467
Score = 81.3 bits (199), Expect = 7e-14, Method: Composition-based stats.
Identities = 40/70 (57%), Positives = 52/70 (74%), Gaps = 5/70 (7%)
Query: 12 ASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDD 71
++ ++DYNEF++DLEED RQN+NI+K +IPVD ++I DP PRITL EMLDD
Sbjct: 402 STTDDDYNEFLDDLEEDPALRQNINIFKDSNKIPVDTDEI-----DPSLPRITLAEMLDD 456
Query: 72 LTIDDVDMEE 81
L I+DVDM E
Sbjct: 457 LAIEDVDMTE 466
>gi|346471561|gb|AEO35625.1| hypothetical protein [Amblyomma maculatum]
Length = 510
Score = 81.3 bits (199), Expect = 7e-14, Method: Composition-based stats.
Identities = 42/70 (60%), Positives = 50/70 (71%), Gaps = 5/70 (7%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEML 69
DT+S DY +F+ DLEED YRQNVNIYK +I VD T+DED DAPRITL+EML
Sbjct: 435 DTSSVARDYTDFLEDLEEDAGYRQNVNIYKDSDKIAVD-----TDDEDGDAPRITLQEML 489
Query: 70 DDLTIDDVDM 79
DDL ++D M
Sbjct: 490 DDLQLEDDPM 499
>gi|157133750|ref|XP_001662996.1| nonsense-mediated mrna decay protein [Aedes aegypti]
gi|108881501|gb|EAT45726.1| AAEL003039-PA [Aedes aegypti]
Length = 510
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 49/67 (73%), Gaps = 5/67 (7%)
Query: 16 NDYNEFMNDLEEDVLYRQNVNIYKAGPEI-PVDANDINTEDEDPDAPRITLEEMLDDLTI 74
NDYNEF+ DLEED RQNVNI+K +I PVD ND+ DP PRITLEEMLDDL +
Sbjct: 446 NDYNEFLEDLEEDPDLRQNVNIFKDNSKIIPVDVNDM----PDPSVPRITLEEMLDDLVL 501
Query: 75 DDVDMEE 81
DDV+M E
Sbjct: 502 DDVEMTE 508
>gi|307202686|gb|EFN81992.1| 60S ribosomal export protein NMD3 [Harpegnathos saltator]
Length = 503
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 54/75 (72%), Gaps = 6/75 (8%)
Query: 8 VPDTASANNDYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLE 66
V ++ NN+YNEF+++LEED RQN+NI++ +IPVD N+I DP P+ITLE
Sbjct: 433 VVSMSTENNEYNEFLDELEEDPELRQNINIFRDPRKQIPVDTNEI-----DPSIPQITLE 487
Query: 67 EMLDDLTIDDVDMEE 81
EMLDDL ++DV+M E
Sbjct: 488 EMLDDLVLEDVEMSE 502
>gi|94468868|gb|ABF18283.1| NMD protein [Aedes aegypti]
Length = 510
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 49/67 (73%), Gaps = 5/67 (7%)
Query: 16 NDYNEFMNDLEEDVLYRQNVNIYKAGPEI-PVDANDINTEDEDPDAPRITLEEMLDDLTI 74
NDYNEF+ DLEED RQNVNI+K +I PVD ND+ DP PRITLEEMLDDL +
Sbjct: 446 NDYNEFLEDLEEDPDLRQNVNIFKDNSKIIPVDVNDM----PDPSVPRITLEEMLDDLVL 501
Query: 75 DDVDMEE 81
DDV+M E
Sbjct: 502 DDVEMTE 508
>gi|312371222|gb|EFR19462.1| hypothetical protein AND_22389 [Anopheles darlingi]
Length = 502
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 48/66 (72%), Gaps = 6/66 (9%)
Query: 16 NDYNEFMNDLEEDVLYRQNVNIYK--AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLT 73
NDYNEF+ DLEED RQNVNI+K ++PVD ND+ +DP PRITLEEMLDDL
Sbjct: 438 NDYNEFLEDLEEDPELRQNVNIFKDSKRQQMPVDTNDM----DDPSVPRITLEEMLDDLV 493
Query: 74 IDDVDM 79
+DD +M
Sbjct: 494 LDDAEM 499
>gi|391344979|ref|XP_003746771.1| PREDICTED: 60S ribosomal export protein NMD3 [Metaseiulus
occidentalis]
Length = 507
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 49/76 (64%), Gaps = 7/76 (9%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEML 69
D++S D+NEF DLEED RQNVNIYK D+ I E E DAP I+L+EML
Sbjct: 433 DSSSVGRDFNEFCEDLEEDPALRQNVNIYK-------DSEKIAVESEAGDAPHISLQEML 485
Query: 70 DDLTIDDVDMEEEVTS 85
DD+T+DD M++ T+
Sbjct: 486 DDMTLDDEAMDDADTA 501
>gi|241856628|ref|XP_002416064.1| NMD protein affecting ribosome stability and mRNA decay, putative
[Ixodes scapularis]
gi|215510278|gb|EEC19731.1| NMD protein affecting ribosome stability and mRNA decay, putative
[Ixodes scapularis]
Length = 508
Score = 71.6 bits (174), Expect = 6e-11, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 49/70 (70%), Gaps = 5/70 (7%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEML 69
+T+S DY EF+ +LEED +YRQNVN+Y ++ VD T+DED + P+ITL+EML
Sbjct: 435 ETSSVARDYTEFLEELEEDAVYRQNVNVYLDREKLAVD-----TDDEDGELPKITLQEML 489
Query: 70 DDLTIDDVDM 79
DDL ++D M
Sbjct: 490 DDLCLEDDPM 499
>gi|91091920|ref|XP_967150.1| PREDICTED: similar to nonsense-mediated mrna decay protein
[Tribolium castaneum]
gi|270000793|gb|EEZ97240.1| hypothetical protein TcasGA2_TC011038 [Tribolium castaneum]
Length = 503
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 49/68 (72%), Gaps = 5/68 (7%)
Query: 15 NNDYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLT 73
N DYNEF++DLEED RQN+NI+K +IP+D+ D D D + PRITL EMLDDL
Sbjct: 439 NRDYNEFLDDLEEDPDLRQNINIFKDNTKQIPIDSGD----DVDENVPRITLAEMLDDLV 494
Query: 74 IDDVDMEE 81
IDDV+M E
Sbjct: 495 IDDVEMSE 502
>gi|350422983|ref|XP_003493349.1| PREDICTED: 60S ribosomal export protein NMD3-like [Bombus
impatiens]
Length = 503
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 51/71 (71%), Gaps = 5/71 (7%)
Query: 12 ASANNDYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLD 70
A+ NNDY EF+ DLEED RQ++NIYK + IPVD N+++ DP+ P+ITLEEMLD
Sbjct: 435 ATDNNDYYEFLEDLEEDPEMRQHINIYKDSRKLIPVDTNELS----DPNCPQITLEEMLD 490
Query: 71 DLTIDDVDMEE 81
DL DD+++
Sbjct: 491 DLAFDDIEVSH 501
>gi|158294075|ref|XP_315383.4| AGAP005375-PA [Anopheles gambiae str. PEST]
gi|157015396|gb|EAA11292.5| AGAP005375-PA [Anopheles gambiae str. PEST]
Length = 510
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 48/66 (72%), Gaps = 6/66 (9%)
Query: 16 NDYNEFMNDLEEDVLYRQNVNIY--KAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLT 73
N+YNEF+ DLEED RQNVNI+ K +IPVD ND+ +DP PRITLEEMLDDL
Sbjct: 445 NEYNEFLEDLEEDPELRQNVNIFKDKNKQQIPVDTNDM----DDPSVPRITLEEMLDDLV 500
Query: 74 IDDVDM 79
++D +M
Sbjct: 501 LEDEEM 506
>gi|332024621|gb|EGI64818.1| 60S ribosomal export protein NMD3 [Acromyrmex echinatior]
Length = 466
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 6/73 (8%)
Query: 5 TNIVPDTASANNDYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRI 63
T+ V ++ NN+YNEF+++LEED RQN+NI++ IPVD ++I DP P+I
Sbjct: 399 TDEVTSMSTENNEYNEFLDELEEDPEMRQNINIFRDVQKHIPVDTSEI-----DPSIPQI 453
Query: 64 TLEEMLDDLTIDD 76
TLEEMLDDL I+D
Sbjct: 454 TLEEMLDDLVIED 466
>gi|340727431|ref|XP_003402047.1| PREDICTED: 60S ribosomal export protein NMD3-like [Bombus
terrestris]
Length = 503
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 49/66 (74%), Gaps = 5/66 (7%)
Query: 15 NNDYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLT 73
NNDY EF+ DLEED RQ++NIYK + IPVD N+++ DP+ P+ITLEEMLDDL
Sbjct: 438 NNDYYEFLEDLEEDPEMRQHINIYKDSRKLIPVDTNELS----DPNCPQITLEEMLDDLA 493
Query: 74 IDDVDM 79
DD+++
Sbjct: 494 FDDIEV 499
>gi|322778783|gb|EFZ09199.1| hypothetical protein SINV_05229 [Solenopsis invicta]
Length = 497
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 6/70 (8%)
Query: 8 VPDTASANNDYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLE 66
V ++ NN+YNEF+++LEED RQN+NIY+ IPVD N+I DP P+ITLE
Sbjct: 433 VASMSTENNEYNEFLDELEEDPELRQNINIYRDIRKHIPVDTNEI-----DPSIPQITLE 487
Query: 67 EMLDDLTIDD 76
EM+DDL I+D
Sbjct: 488 EMMDDLVIED 497
>gi|213972521|ref|NP_001135423.1| nonsense-mediated mRNA 3 [Nasonia vitripennis]
Length = 506
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 51/75 (68%), Gaps = 6/75 (8%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEM 68
D S NN+YNEF++DLEED R NVNI++ +IPVD + I DP P+ITLEEM
Sbjct: 436 DMNSENNEYNEFLDDLEEDPELRSNVNIFRDKSKQIPVDTDCI-----DPTMPQITLEEM 490
Query: 69 LDDLTIDDVDMEEEV 83
LDDL I+D +M E +
Sbjct: 491 LDDLVIEDEEMAEFI 505
>gi|380018901|ref|XP_003693357.1| PREDICTED: 60S ribosomal export protein NMD3-like [Apis florea]
Length = 502
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 48/66 (72%), Gaps = 5/66 (7%)
Query: 15 NNDYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLT 73
NNDY EF+ D+EE+ RQN+NI++ IP+D N+++ DP P+ITLEEMLDDL
Sbjct: 437 NNDYYEFLEDIEENPEMRQNINIFRNRMKTIPIDTNELS----DPSCPQITLEEMLDDLA 492
Query: 74 IDDVDM 79
IDDV++
Sbjct: 493 IDDVEV 498
>gi|66559176|ref|XP_624393.1| PREDICTED: 60S ribosomal export protein NMD3 [Apis mellifera]
Length = 503
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 48/66 (72%), Gaps = 5/66 (7%)
Query: 15 NNDYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLT 73
NNDY EF+ D+EED RQN+NI+K IP+D N+++ DP P+ITLEEMLDDL
Sbjct: 438 NNDYYEFLEDIEEDPEMRQNINIFKDRMKTIPIDTNELS----DPSYPQITLEEMLDDLA 493
Query: 74 IDDVDM 79
I+DV++
Sbjct: 494 INDVEV 499
>gi|332374912|gb|AEE62597.1| unknown [Dendroctonus ponderosae]
Length = 500
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 4/70 (5%)
Query: 12 ASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDD 71
++ N++NEFM+DLEED R+NVNI+K + A D + D DP+ P ITL+EMLDD
Sbjct: 435 STDGNEFNEFMDDLEEDPELRRNVNIFKNS----LFAVDTDDTDYDPNKPCITLDEMLDD 490
Query: 72 LTIDDVDMEE 81
LT++DV+M +
Sbjct: 491 LTVNDVEMTD 500
>gi|383857986|ref|XP_003704484.1| PREDICTED: 60S ribosomal export protein NMD3-like [Megachile
rotundata]
Length = 504
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 5/66 (7%)
Query: 15 NNDYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLT 73
NNDY EF+ D+EED RQN+NI++ IPVD N++ D P+ITLEEMLDDL
Sbjct: 439 NNDYYEFLEDIEEDPEMRQNINIFRDKKKVIPVDTNEL----PDLSCPQITLEEMLDDLA 494
Query: 74 IDDVDM 79
IDDV++
Sbjct: 495 IDDVEI 500
>gi|260788891|ref|XP_002589482.1| hypothetical protein BRAFLDRAFT_125192 [Branchiostoma floridae]
gi|229274660|gb|EEN45493.1| hypothetical protein BRAFLDRAFT_125192 [Branchiostoma floridae]
Length = 379
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 5/67 (7%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEML 69
DT S DYNEF+ DLEED LYR++VNIY+ ++ V+ ++ +D DAPRI+L+EML
Sbjct: 305 DTDSMERDYNEFLEDLEEDPLYRKDVNIYRDAEKLAVE-----SDTDDDDAPRISLQEML 359
Query: 70 DDLTIDD 76
+DL I +
Sbjct: 360 EDLHISE 366
>gi|443730657|gb|ELU16081.1| hypothetical protein CAPTEDRAFT_174567 [Capitella teleta]
Length = 510
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/73 (46%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEML 69
DT S N DYN+F+ DLEED RQ +NIYK +I V+ E ++ DAP+I+L EM+
Sbjct: 435 DTDSVNRDYNDFLEDLEEDPASRQQINIYKDEAKIAVEP---EYESDNEDAPQISLMEMM 491
Query: 70 DDLTIDDVDMEEE 82
+DL I + EE
Sbjct: 492 EDLKISEDATGEE 504
>gi|389611415|dbj|BAM19319.1| nonsense-mediated mRNA decay protein [Papilio polytes]
Length = 491
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 5/56 (8%)
Query: 12 ASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEE 67
S+N DYNEF++DLEED +RQN+NI+K +P+D ++I DP PRITL +
Sbjct: 438 GSSNEDYNEFLDDLEEDPTFRQNINIFKDASRVPIDTDEI-----DPSLPRITLAD 488
>gi|321473431|gb|EFX84398.1| hypothetical protein DAPPUDRAFT_194355 [Daphnia pulex]
Length = 509
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEML 69
D S N DY +F+ DLEED +RQN+NIYK ++ + + D + P+ITL+EML
Sbjct: 433 DVTSVNRDYTDFLEDLEEDPAFRQNINIYKDERKV---GFAVEVGEPDEEIPQITLQEML 489
Query: 70 DDLTIDD 76
DDL I D
Sbjct: 490 DDLHIGD 496
>gi|328706094|ref|XP_001952313.2| PREDICTED: 60S ribosomal export protein NMD3-like [Acyrthosiphon
pisum]
Length = 510
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/69 (49%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
Query: 13 SANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDL 72
S +ND +EFM+DLEED RQN+NIYK P++ +++ + +D D APRI+LEEM++DL
Sbjct: 441 SDHNDMDEFMDDLEEDKDLRQNINIYK-NPDVGIESAAEDDDDND-GAPRISLEEMMEDL 498
Query: 73 TIDDVDMEE 81
I + D+ E
Sbjct: 499 CIYEDDVME 507
>gi|308459422|ref|XP_003092031.1| hypothetical protein CRE_23156 [Caenorhabditis remanei]
gi|308254449|gb|EFO98401.1| hypothetical protein CRE_23156 [Caenorhabditis remanei]
Length = 516
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 52/79 (65%), Gaps = 7/79 (8%)
Query: 6 NIVP-DTASANNDYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRI 63
NIV +TAS +++ FM D+EED L R+ +NIYK A + +D +D +D P+AP
Sbjct: 429 NIVGNETASVADEFQGFMEDIEEDALMREKINIYKDAEKAVAIDGDD---DDAHPEAP-- 483
Query: 64 TLEEMLDDLTIDDVDMEEE 82
+L EMLDDL DD +M+EE
Sbjct: 484 SLAEMLDDLKFDDDEMKEE 502
>gi|196008655|ref|XP_002114193.1| hypothetical protein TRIADDRAFT_27425 [Trichoplax adhaerens]
gi|190583212|gb|EDV23283.1| hypothetical protein TRIADDRAFT_27425 [Trichoplax adhaerens]
Length = 483
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEML 69
D + + DY+ F+ DLEED YRQNVNIYK + N + D D P I LEEML
Sbjct: 415 DMETDDMDYDNFLEDLEEDPTYRQNVNIYK---DPKFKGNKDSRPDPDEQLPSIGLEEML 471
Query: 70 DDLTIDD 76
+DL IDD
Sbjct: 472 EDLCIDD 478
>gi|25143170|ref|NP_492114.2| Protein T25G3.3 [Caenorhabditis elegans]
gi|19171243|emb|CAA96689.2| Protein T25G3.3 [Caenorhabditis elegans]
Length = 513
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 51/78 (65%), Gaps = 7/78 (8%)
Query: 6 NIVP-DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIP-VDANDINTEDEDPDAPRI 63
NIV +TAS +++ FM D+EED L R+ +NIYK + P VD +D ++ PDAP
Sbjct: 429 NIVGNETASVADEFQGFMEDIEEDALMREKINIYKDAEKGPNVDGDD---AEDHPDAP-- 483
Query: 64 TLEEMLDDLTIDDVDMEE 81
TL EMLDDL DD +M+E
Sbjct: 484 TLAEMLDDLKFDDEEMKE 501
>gi|339246087|ref|XP_003374677.1| 60S ribosomal export protein Nmd3 [Trichinella spiralis]
gi|316972075|gb|EFV55768.1| 60S ribosomal export protein Nmd3 [Trichinella spiralis]
Length = 593
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 9/75 (12%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYK--AGPEIPVDANDINTEDE-DPDAPRITLE 66
+T S +NDY F+ DLEED + R+ VNIY+ IPV EDE D D P + L+
Sbjct: 523 ETDSLDNDYTGFLEDLEEDSVLREKVNIYRDPTKQHIPV------AEDEFDDDLPAVDLQ 576
Query: 67 EMLDDLTIDDVDMEE 81
EML DL I+D +M++
Sbjct: 577 EMLSDLCINDQEMDD 591
>gi|291231611|ref|XP_002735759.1| PREDICTED: NMD3 homolog [Saccoglossus kowalevskii]
Length = 507
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 7/68 (10%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIY-KAGPEIPVDANDINTEDEDPDAPRITLEEM 68
D DY+EF+ DLE+D YRQ+VNIY IPV+++D D DAP+I+L+EM
Sbjct: 434 DDDKMERDYSEFLEDLEDDPEYRQHVNIYMDRNKSIPVESSD------DDDAPKISLQEM 487
Query: 69 LDDLTIDD 76
L+DL I +
Sbjct: 488 LEDLNISE 495
>gi|334347422|ref|XP_001369441.2| PREDICTED: hypothetical protein LOC100015345 [Monodelphis domestica]
Length = 1022
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 6/57 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
Y +F+ DLEED R+NVNIYKA IPV++ +T+DE APRI+L EML+DL I
Sbjct: 958 YQDFLEDLEEDEAIRKNVNIYKAS-TIPVES---DTDDE--GAPRISLAEMLEDLHI 1008
>gi|324508962|gb|ADY43779.1| 60S ribosomal export protein NMD3 [Ascaris suum]
Length = 504
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Query: 6 NIVPDTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITL 65
+IV +TAS N++ FM DLEED R+ VNIYKA +P D N+ D P +L
Sbjct: 430 SIVNETASVENEFEAFMEDLEEDEQMREKVNIYKARERVPPIDEDDNSVDLPPGP---SL 486
Query: 66 EEMLDDLTID-DVDMEE 81
EMLDDL I+ DV+M +
Sbjct: 487 AEMLDDLDINADVEMAD 503
>gi|156346911|ref|XP_001621572.1| hypothetical protein NEMVEDRAFT_v1g144377 [Nematostella vectensis]
gi|156207654|gb|EDO29472.1| predicted protein [Nematostella vectensis]
Length = 491
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 6/60 (10%)
Query: 17 DYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 76
DY+EF+ DLEED RQNVNIY +P ++ ED + P+I+L+EML+DL ++D
Sbjct: 422 DYDEFLADLEEDKTLRQNVNIYVDRDHMP------ESDAEDEEIPKISLQEMLEDLKLED 475
>gi|341901748|gb|EGT57683.1| hypothetical protein CAEBREN_18901 [Caenorhabditis brenneri]
Length = 511
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 9/85 (10%)
Query: 6 NIVP-DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDED--PDAPR 62
NIV +TAS +++ FM D+EED L R+ +NIYK + P ++ T+D+D P+AP
Sbjct: 429 NIVGNETASVADEFQGFMEDIEEDALMREKINIYKDSEKAP----NVETDDDDAHPEAP- 483
Query: 63 ITLEEMLDDLTIDDVDMEEEVTSDQ 87
+L EMLDDL DD +M+E ++D+
Sbjct: 484 -SLAEMLDDLKFDDEEMKEAESADE 507
>gi|156363113|ref|XP_001625892.1| predicted protein [Nematostella vectensis]
gi|156212746|gb|EDO33792.1| predicted protein [Nematostella vectensis]
Length = 428
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 6/62 (9%)
Query: 17 DYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 76
DY+EF+ DLEED RQNVNIY +P ++ ED + P+I+L+EML+DL ++D
Sbjct: 369 DYDEFLADLEEDKTLRQNVNIYVDRDHMP------ESDAEDEEIPKISLQEMLEDLKLED 422
Query: 77 VD 78
+
Sbjct: 423 AE 424
>gi|341886241|gb|EGT42176.1| hypothetical protein CAEBREN_15656 [Caenorhabditis brenneri]
Length = 511
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 9/85 (10%)
Query: 6 NIVP-DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDED--PDAPR 62
NIV +TAS +++ FM D+EED L R+ +NIYK + P ++ T+D+D P+AP
Sbjct: 429 NIVGNETASVADEFQGFMEDIEEDALMREKINIYKDSEKAP----NVETDDDDAHPEAP- 483
Query: 63 ITLEEMLDDLTIDDVDMEEEVTSDQ 87
+L EMLDDL DD +M+E ++D+
Sbjct: 484 -SLAEMLDDLKFDDEEMKEVESADE 507
>gi|393243763|gb|EJD51277.1| RNA binding protein [Auricularia delicata TFB-10046 SS5]
Length = 543
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 15/88 (17%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIP----VDAND--------INTEDED 57
D + DY F+ DLEEDV R VN+YKA P+ P +D +D TE ++
Sbjct: 454 DQKKVDEDYEIFLRDLEEDVEMRAAVNLYKAKPQKPKASAMDVDDAPAPSEDGTGTEADE 513
Query: 58 PDAPRITLEEMLDD---LTIDDVDMEEE 82
PD P + L+E+L+D L IDD + +EE
Sbjct: 514 PDFPDVKLDELLEDMENLGIDDDEEQEE 541
>gi|403265970|ref|XP_003925178.1| PREDICTED: 60S ribosomal export protein NMD3 [Saimiri boliviensis
boliviensis]
Length = 508
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 444 YQDFLEDLEEDETIRKNVNIYRDS-TIPVES---DTDDE--GAPRISLAEMLEDLHISQD 497
Query: 78 DMEEEVTS 85
EE TS
Sbjct: 498 ATGEEGTS 505
>gi|47224987|emb|CAF97402.1| unnamed protein product [Tetraodon nigroviridis]
Length = 513
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 5/64 (7%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNI++ +IPV+ ++ +D AP+I+L EML++L++ D
Sbjct: 448 YQDFLEDLEEDEALRKNVNIFRDASKIPVE-----SDTDDDGAPQISLAEMLEELSLTDA 502
Query: 78 DMEE 81
EE
Sbjct: 503 TGEE 506
>gi|426342766|ref|XP_004038005.1| PREDICTED: 60S ribosomal export protein NMD3 [Gorilla gorilla
gorilla]
Length = 493
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 429 YQDFLEDLEEDEAIRKNVNIYRDSA-IPVES---DTDDE--GAPRISLAEMLEDLHISQD 482
Query: 78 DMEEEVTS 85
EE S
Sbjct: 483 ATGEEGAS 490
>gi|224147658|ref|XP_002188713.1| PREDICTED: 60S ribosomal export protein NMD3-like, partial
[Taeniopygia guttata]
Length = 474
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 6/57 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
Y +F+ DLEED R+NVNIY+ +IPV+ ++ +D APRI+L EML+DL I
Sbjct: 413 YQDFLEDLEEDEAIRKNVNIYR-NADIPVE-----SDTDDDGAPRISLAEMLEDLHI 463
>gi|432890080|ref|XP_004075417.1| PREDICTED: 60S ribosomal export protein NMD3-like [Oryzias latipes]
Length = 504
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 76
Y +F+ DLEED R+NVNIY+ +IPV+ ++ +D APRI+L EML++L++ D
Sbjct: 439 YQDFLEDLEEDEALRRNVNIYRDVAKIPVE-----SDTDDDGAPRISLVEMLEELSLSD 492
>gi|213511776|ref|NP_001133666.1| 60S ribosomal export protein NMD3 [Salmo salar]
gi|209154868|gb|ACI33666.1| 60S ribosomal export protein NMD3 [Salmo salar]
Length = 504
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/59 (47%), Positives = 43/59 (72%), Gaps = 5/59 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 76
Y +F+ DLEED R+NVNI++ +IPV++ +T+DE AP+I+L EML+DL++ D
Sbjct: 439 YQDFLEDLEEDEALRKNVNIFRDASKIPVES---DTDDE--GAPQISLMEMLEDLSLTD 492
>gi|355559900|gb|EHH16628.1| hypothetical protein EGK_11941 [Macaca mulatta]
Length = 529
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDS-TIPVES---DTDDE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEEVTS 85
EE S
Sbjct: 493 ATGEEAKS 500
>gi|241958934|ref|XP_002422186.1| 60S ribosomal export protein NMD3 [Candida dubliniensis CD36]
gi|223645531|emb|CAX40190.1| large ribosomal subunit nuclear export factor, putative [Candida
dubliniensis CD36]
Length = 519
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 7/73 (9%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYKAG---PEIPVDANDIN-TEDEDPDAPRITLEEM- 68
A DY F+ +LEED RQ +N+YKAG P++ + +D+N E++D DAP I ++E+
Sbjct: 446 AERDYELFLQELEEDDELRQTINLYKAGDNQPQVSRNHDDMNDGEEDDEDAPEIGIDELL 505
Query: 69 --LDDLTIDDVDM 79
LDD+T+DD M
Sbjct: 506 DELDDMTLDDTPM 518
>gi|297286492|ref|XP_001096663.2| PREDICTED: 60S ribosomal export protein NMD3 isoform 2 [Macaca
mulatta]
Length = 503
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDS-TIPVES---DTDDE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEEVTS 85
EE S
Sbjct: 493 ATGEEGAS 500
>gi|431915174|gb|ELK15861.1| 60S ribosomal export protein NMD3 [Pteropus alecto]
Length = 542
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 6/65 (9%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 477 YQDFLEDLEEDEAIRKNVNIYRDSA-IPVES---DTDDE--GAPRISLAEMLEDLHISQD 530
Query: 78 DMEEE 82
EE
Sbjct: 531 ATGEE 535
>gi|395528258|ref|XP_003766247.1| PREDICTED: 60S ribosomal export protein NMD3 [Sarcophilus harrisii]
Length = 526
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/59 (50%), Positives = 41/59 (69%), Gaps = 6/59 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 76
Y +F+ DLEED R+NVNIYKA PV++ +T+DE AP+I+L EML+DL I +
Sbjct: 462 YQDFLEDLEEDETIRKNVNIYKASTA-PVES---DTDDE--GAPQISLAEMLEDLHISE 514
>gi|119599024|gb|EAW78618.1| NMD3 homolog (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|119599025|gb|EAW78619.1| NMD3 homolog (S. cerevisiae), isoform CRA_a [Homo sapiens]
Length = 503
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDSA-IPVES---DTDDE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEEVTS 85
EE S
Sbjct: 493 ATGEEGAS 500
>gi|114590191|ref|XP_516854.2| PREDICTED: 60S ribosomal export protein NMD3 [Pan troglodytes]
gi|410333631|gb|JAA35762.1| NMD3 homolog [Pan troglodytes]
Length = 503
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDSA-IPVES---DTDDE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEEVTS 85
EE S
Sbjct: 493 ATGEEGAS 500
>gi|397521152|ref|XP_003830666.1| PREDICTED: 60S ribosomal export protein NMD3 [Pan paniscus]
Length = 503
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDSA-IPVES---DTDDE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEEVTS 85
EE S
Sbjct: 493 ATGEEGAS 500
>gi|410209362|gb|JAA01900.1| NMD3 homolog [Pan troglodytes]
gi|410266978|gb|JAA21455.1| NMD3 homolog [Pan troglodytes]
gi|410304762|gb|JAA30981.1| NMD3 homolog [Pan troglodytes]
Length = 503
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDSA-IPVES---DTDDE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEEVTS 85
EE S
Sbjct: 493 ATGEEGAS 500
>gi|118095345|ref|XP_422813.2| PREDICTED: 60S ribosomal export protein NMD3 [Gallus gallus]
Length = 504
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 6/59 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 76
Y +F+ DLEED R+NVNIY+ +IPV+ ++ +D APRI+L EML+DL I +
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYR-NADIPVE-----SDTDDDGAPRISLAEMLEDLHISE 491
>gi|4680653|gb|AAD27716.1|AF132941_1 CGI-07 protein [Homo sapiens]
Length = 503
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDSA-IPVES---DTDDE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEEVTS 85
EE S
Sbjct: 493 ATGEEGAS 500
>gi|19923796|ref|NP_057022.2| 60S ribosomal export protein NMD3 [Homo sapiens]
gi|74731412|sp|Q96D46.1|NMD3_HUMAN RecName: Full=60S ribosomal export protein NMD3; Short=hNMD3
gi|15426434|gb|AAH13317.1| NMD3 homolog (S. cerevisiae) [Homo sapiens]
gi|190690621|gb|ACE87085.1| NMD3 homolog (S. cerevisiae) protein [synthetic construct]
gi|190691981|gb|ACE87765.1| NMD3 homolog (S. cerevisiae) protein [synthetic construct]
Length = 503
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDSA-IPVES---DTDDE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEEVTS 85
EE S
Sbjct: 493 ATGEEGAS 500
>gi|193787720|dbj|BAG52923.1| unnamed protein product [Homo sapiens]
Length = 503
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDSA-IPVES---DTDDE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEEVTS 85
EE S
Sbjct: 493 ATGEEGAS 500
>gi|197101775|ref|NP_001127311.1| 60S ribosomal export protein NMD3 [Pongo abelii]
gi|75056728|sp|Q5RC82.1|NMD3_PONAB RecName: Full=60S ribosomal export protein NMD3
gi|55727749|emb|CAH90625.1| hypothetical protein [Pongo abelii]
Length = 503
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDSA-IPVES---DTDDE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEEVTS 85
EE S
Sbjct: 493 ATGEEGAS 500
>gi|224060929|ref|XP_002198571.1| PREDICTED: 60S ribosomal export protein NMD3-like [Taeniopygia
guttata]
Length = 504
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 6/57 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
Y +F+ DLEED R+NVNIY+ +IPV+ ++ +D APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYR-NADIPVE-----SDTDDDGAPRISLAEMLEDLHI 489
>gi|449277297|gb|EMC85532.1| 60S ribosomal export protein NMD3, partial [Columba livia]
Length = 489
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 6/59 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 76
Y +F+ DLEED R+NVNIY+ +IPV+ ++ +D APRI+L EML+DL I +
Sbjct: 424 YQDFLEDLEEDEAIRKNVNIYR-NADIPVE-----SDTDDDGAPRISLAEMLEDLHISE 476
>gi|332214638|ref|XP_003256441.1| PREDICTED: 60S ribosomal export protein NMD3 [Nomascus leucogenys]
Length = 503
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDSA-IPVES---DTDDE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEEVTS 85
EE S
Sbjct: 493 ATGEEGAS 500
>gi|402861061|ref|XP_003894927.1| PREDICTED: 60S ribosomal export protein NMD3 [Papio anubis]
Length = 503
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDS-TIPVES---DTDDE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEEVTS 85
EE S
Sbjct: 493 ATGEEGAS 500
>gi|380785895|gb|AFE64823.1| 60S ribosomal export protein NMD3 [Macaca mulatta]
gi|383408481|gb|AFH27454.1| 60S ribosomal export protein NMD3 [Macaca mulatta]
gi|384941278|gb|AFI34244.1| 60S ribosomal export protein NMD3 [Macaca mulatta]
Length = 503
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDS-TIPVES---DTDDE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEEVTS 85
EE S
Sbjct: 493 ATGEEGAS 500
>gi|291400106|ref|XP_002716402.1| PREDICTED: NMD3 homolog [Oryctolagus cuniculus]
Length = 503
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDS-TIPVES---DTDDE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEEVTS 85
EE S
Sbjct: 493 ATGEEGAS 500
>gi|410971102|ref|XP_003992012.1| PREDICTED: 60S ribosomal export protein NMD3 [Felis catus]
Length = 691
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 6/65 (9%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 626 YQDFLEDLEEDEAIRKNVNIYRDS-TIPVES---DTDDE--GAPRISLAEMLEDLHISQD 679
Query: 78 DMEEE 82
EE
Sbjct: 680 ATGEE 684
>gi|432117229|gb|ELK37659.1| 60S ribosomal export protein NMD3 [Myotis davidii]
Length = 503
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDS-TIPVES---DTDDE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEEVTS 85
EE S
Sbjct: 493 ATGEEGAS 500
>gi|383408479|gb|AFH27453.1| 60S ribosomal export protein NMD3 [Macaca mulatta]
Length = 503
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDS-TIPVES---DTDDE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEEVTS 85
EE S
Sbjct: 493 ATGEEGAS 500
>gi|198435795|ref|XP_002120179.1| PREDICTED: similar to nmd3 homolog (s. cerevisiae) [Ciona
intestinalis]
Length = 498
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 9/66 (13%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI-DD 76
Y EF+ DLEED +R+N++IY G D+ + ++ + P ++L+EML DL+I DD
Sbjct: 440 YTEFLEDLEEDKEFRKNIDIYIDG--------DVPSSADETEFPSVSLQEMLQDLSIKDD 491
Query: 77 VDMEEE 82
V+M+ E
Sbjct: 492 VEMDGE 497
>gi|125982920|ref|XP_001355225.1| GA17465 [Drosophila pseudoobscura pseudoobscura]
gi|195168912|ref|XP_002025274.1| GL13399 [Drosophila persimilis]
gi|54643539|gb|EAL32282.1| GA17465 [Drosophila pseudoobscura pseudoobscura]
gi|194108730|gb|EDW30773.1| GL13399 [Drosophila persimilis]
Length = 523
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 6/66 (9%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDL 72
+ +DY+EF++DLEE+V R VNIY+ +P++ + D P+ITLEEML+D+
Sbjct: 447 SKHDYHEFLDDLEENVDMRGQVNIYRDTNKTLPIE-----VQGATGDVPQITLEEMLEDM 501
Query: 73 TIDDVD 78
T++ D
Sbjct: 502 TLECAD 507
>gi|345796501|ref|XP_545261.3| PREDICTED: 60S ribosomal export protein NMD3 [Canis lupus
familiaris]
Length = 504
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 6/65 (9%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDS-TIPVES---DTDDE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEE 82
EE
Sbjct: 493 ATGEE 497
>gi|47224989|emb|CAF97404.1| unnamed protein product [Tetraodon nigroviridis]
Length = 549
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 5/66 (7%)
Query: 16 NDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTID 75
Y +F+ DLEED R+NVNI++ +IPV+ ++ +D AP+I+L EML++L++
Sbjct: 482 RQYQDFLEDLEEDEALRKNVNIFRDASKIPVE-----SDTDDDGAPQISLAEMLEELSLT 536
Query: 76 DVDMEE 81
D EE
Sbjct: 537 DATGEE 542
>gi|410909840|ref|XP_003968398.1| PREDICTED: 60S ribosomal export protein NMD3-like [Takifugu
rubripes]
Length = 504
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 76
Y +F+ DLEED R+N+NI++ +IPV+ ++ +D AP+I+L EML++L++ D
Sbjct: 439 YQDFLEDLEEDEALRKNINIFRDASKIPVE-----SDTDDDGAPQISLAEMLEELSLMD 492
>gi|296227669|ref|XP_002759470.1| PREDICTED: 60S ribosomal export protein NMD3 [Callithrix jacchus]
Length = 503
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 6/57 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDETIRKNVNIYRDSA-IPVES---DTDDE--GAPRISLAEMLEDLHI 489
>gi|350591686|ref|XP_003483312.1| PREDICTED: 60S ribosomal export protein NMD3-like [Sus scrofa]
Length = 73
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 41/57 (71%), Gaps = 6/57 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
Y +F+ DLEED R+NVNIY+ P IPV++ +T+DE APRI+L EML+DL I
Sbjct: 9 YQDFLEDLEEDEAIRKNVNIYR-DPTIPVES---DTDDE--GAPRISLAEMLEDLHI 59
>gi|148683547|gb|EDL15494.1| NMD3 homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
Length = 559
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R++VNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 495 YQDFLEDLEEDEAIRKHVNIYRDA-TIPVES---DTDDE--GAPRISLAEMLEDLHISQD 548
Query: 78 DMEEEVTS 85
EE S
Sbjct: 549 ATGEEGAS 556
>gi|395843852|ref|XP_003794686.1| PREDICTED: 60S ribosomal export protein NMD3 [Otolemur garnettii]
Length = 504
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 6/57 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDS-TIPVES---DTDDE--GAPRISLAEMLEDLHI 489
>gi|268562890|ref|XP_002638695.1| Hypothetical protein CBG11892 [Caenorhabditis briggsae]
Length = 513
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 6 NIVP-DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRIT 64
NIV +TAS +++ FM D+EED L R+ +NIYK + P D + +D+ P+AP +
Sbjct: 429 NIVGNETASVADEFQGFMEDIEEDALMREKINIYKDAEKAP--NVDGDDDDDHPEAP--S 484
Query: 65 LEEMLDDLTIDDVDMEEEVTS 85
L EML+DL DD +M+E S
Sbjct: 485 LAEMLEDLKFDDEEMKEAAES 505
>gi|149048326|gb|EDM00902.1| rCG62699, isoform CRA_a [Rattus norvegicus]
Length = 525
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ +PV++ +T+DE APRI+L EML+DL I
Sbjct: 461 YQDFLEDLEEDETIRKNVNIYRDS-TVPVES---DTDDE--GAPRISLAEMLEDLRISQD 514
Query: 78 DMEEEVTS 85
EE S
Sbjct: 515 ATGEEGAS 522
>gi|157818501|ref|NP_001101152.1| 60S ribosomal export protein NMD3 [Rattus norvegicus]
gi|149048327|gb|EDM00903.1| rCG62699, isoform CRA_b [Rattus norvegicus]
gi|171846766|gb|AAI61998.1| Nmd3 protein [Rattus norvegicus]
Length = 503
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ +PV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDETIRKNVNIYRDS-TVPVES---DTDDE--GAPRISLAEMLEDLRISQD 492
Query: 78 DMEEEVTS 85
EE S
Sbjct: 493 ATGEEGAS 500
>gi|354482257|ref|XP_003503315.1| PREDICTED: 60S ribosomal export protein NMD3 [Cricetulus griseus]
Length = 516
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ +PV++ +T+DE APRI+L EML+DL I
Sbjct: 452 YQDFLEDLEEDEAIRKNVNIYRDS-TVPVES---DTDDE--GAPRISLAEMLEDLHISQD 505
Query: 78 DMEEEVTS 85
EE S
Sbjct: 506 ATGEEGAS 513
>gi|355707455|gb|AES02963.1| NMD3-like protein [Mustela putorius furo]
Length = 503
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 6/65 (9%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDS-TIPVES---DTDDE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEE 82
EE
Sbjct: 493 ATGEE 497
>gi|351712585|gb|EHB15504.1| 60S ribosomal export protein NMD3, partial [Heterocephalus glaber]
Length = 497
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 6/57 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDS-TIPVES---DTDDE--GAPRISLAEMLEDLHI 489
>gi|326926160|ref|XP_003209272.1| PREDICTED: 60S ribosomal export protein NMD3-like [Meleagris
gallopavo]
Length = 504
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 6/59 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 76
Y +F+ DLEED R+N+NIY+ ++PV+ ++ +D APRI+L EML+DL I +
Sbjct: 439 YQDFLEDLEEDEAIRKNINIYR-NVDVPVE-----SDTDDDGAPRISLSEMLEDLHISE 491
>gi|149414089|ref|XP_001507475.1| PREDICTED: 60S ribosomal export protein NMD3-like, partial
[Ornithorhynchus anatinus]
Length = 164
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 41/57 (71%), Gaps = 6/57 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
Y +F+ DLEED R+NVNIYK E+PV++ +T+DE APRI+L EML+DL I
Sbjct: 100 YQDFLEDLEEDEAIRRNVNIYK-NLEVPVES---DTDDE--GAPRISLAEMLEDLHI 150
>gi|344307154|ref|XP_003422247.1| PREDICTED: 60S ribosomal export protein NMD3-like [Loxodonta
africana]
Length = 504
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+N+NIY+ IPV+ + +D APRI+L EML+DL I
Sbjct: 439 YEDFLEDLEEDEAIRKNINIYRDS-TIPVEG-----DADDEGAPRISLAEMLEDLHISQD 492
Query: 78 DMEEEVTS 85
EE S
Sbjct: 493 ATGEEGAS 500
>gi|194222558|ref|XP_001493978.2| PREDICTED: 60S ribosomal export protein NMD3 [Equus caballus]
Length = 503
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 6/65 (9%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVN+Y+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNVYRDS-TIPVES---DTDDE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEE 82
EE
Sbjct: 493 ATGEE 497
>gi|19526940|ref|NP_598548.1| 60S ribosomal export protein NMD3 [Mus musculus]
gi|81903129|sp|Q99L48.1|NMD3_MOUSE RecName: Full=60S ribosomal export protein NMD3
gi|13277951|gb|AAH03842.1| NMD3 homolog (S. cerevisiae) [Mus musculus]
gi|26353722|dbj|BAC40491.1| unnamed protein product [Mus musculus]
gi|74147592|dbj|BAE38680.1| unnamed protein product [Mus musculus]
gi|74208223|dbj|BAE26326.1| unnamed protein product [Mus musculus]
gi|148683546|gb|EDL15493.1| NMD3 homolog (S. cerevisiae), isoform CRA_a [Mus musculus]
Length = 503
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R++VNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKHVNIYRDA-TIPVES---DTDDE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEEVTS 85
EE S
Sbjct: 493 ATGEEGAS 500
>gi|387017328|gb|AFJ50782.1| 60S ribosomal export protein NMD3-like [Crotalus adamanteus]
Length = 504
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 40/59 (67%), Gaps = 6/59 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 76
Y +F+ DLEED R+NVNIYK P +PV++ DI +D P+I+L EML+DL I +
Sbjct: 439 YQDFLEDLEEDETIRKNVNIYK-NPVVPVES-DI----DDDSIPQISLTEMLEDLQISE 491
>gi|444705851|gb|ELW47238.1| 60S ribosomal export protein NMD3 [Tupaia chinensis]
Length = 360
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV+ ++ +D APRI+L EML+DL I
Sbjct: 296 YQDFLEDLEEDEAIRKNVNIYRDS-SIPVE-----SDTDDEGAPRISLAEMLEDLHISQD 349
Query: 78 DMEEEVTS 85
EE S
Sbjct: 350 ATGEEGAS 357
>gi|426218020|ref|XP_004003248.1| PREDICTED: 60S ribosomal export protein NMD3 [Ovis aries]
Length = 503
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 40/57 (70%), Gaps = 6/57 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APR++L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDS-TIPVES---DTDDE--GAPRVSLAEMLEDLHI 489
>gi|440912375|gb|ELR61947.1| 60S ribosomal export protein NMD3 [Bos grunniens mutus]
Length = 503
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 6/57 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDS-TIPVES---DTDDE--GAPRISLAEMLEDLHI 489
>gi|115495387|ref|NP_001068888.1| 60S ribosomal export protein NMD3 [Bos taurus]
gi|122132352|sp|Q08DS5.1|NMD3_BOVIN RecName: Full=60S ribosomal export protein NMD3
gi|115305166|gb|AAI23589.1| NMD3 homolog (S. cerevisiae) [Bos taurus]
gi|296491130|tpg|DAA33203.1| TPA: 60S ribosomal export protein NMD3 [Bos taurus]
Length = 503
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 6/57 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDS-TIPVES---DTDDE--GAPRISLAEMLEDLHI 489
>gi|82186247|sp|Q6P2Z6.1|NMD3_XENTR RecName: Full=60S ribosomal export protein NMD3
gi|39849988|gb|AAH64238.1| 60S ribosomal export protein NMD3 [Xenopus (Silurana) tropicalis]
gi|51703739|gb|AAH81303.1| 60S ribosomal export protein NMD3 [Xenopus (Silurana) tropicalis]
Length = 504
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 41/57 (71%), Gaps = 6/57 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
Y +F+ DLEED + R+NVNIYK +PV++ +T++E APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEVIRKNVNIYK-NANLPVES---DTDEE--GAPRISLAEMLEDLHI 489
>gi|89886075|ref|NP_989367.2| 60S ribosomal export protein NMD3 [Xenopus (Silurana) tropicalis]
gi|89268245|emb|CAJ82727.1| nmd3 homolog (s. cerevisiae) [Xenopus (Silurana) tropicalis]
Length = 504
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 41/57 (71%), Gaps = 6/57 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
Y +F+ DLEED + R+NVNIYK +PV++ +T++E APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEVIRKNVNIYK-NANLPVES---DTDEE--GAPRISLAEMLEDLHI 489
>gi|366992630|ref|XP_003676080.1| hypothetical protein NCAS_0D01360 [Naumovozyma castellii CBS 4309]
gi|342301946|emb|CCC69717.1| hypothetical protein NCAS_0D01360 [Naumovozyma castellii CBS 4309]
Length = 521
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEML 69
D A DY F+ +LEED RQ +N+YK P EDEDPDAP+I ++E+L
Sbjct: 440 DMERAERDYELFLQELEEDDEMRQTINLYKNNAPAPAPQPHEIEEDEDPDAPQIDIDELL 499
Query: 70 DDL---TIDD 76
D+L T+DD
Sbjct: 500 DELDEMTLDD 509
>gi|195347866|ref|XP_002040472.1| GM18910 [Drosophila sechellia]
gi|194121900|gb|EDW43943.1| GM18910 [Drosophila sechellia]
Length = 517
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 8/74 (10%)
Query: 17 DYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTID 75
DY+EF++DLEE+ R VNIY+ IP++A + D P+ITLEEML+D+T++
Sbjct: 444 DYHEFLDDLEENEDIRGQVNIYRDTNKTIPIEA-----QAAGGDVPQITLEEMLEDMTLE 498
Query: 76 DVD--MEEEVTSDQ 87
D M EE +D+
Sbjct: 499 CADDEMGEEGDADE 512
>gi|281344425|gb|EFB20009.1| hypothetical protein PANDA_021824 [Ailuropoda melanoleuca]
Length = 488
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 6/65 (9%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T++E APRI+L EML+DL I
Sbjct: 424 YQDFLEDLEEDEAIRKNVNIYRDA-TIPVES---DTDEE--GAPRISLAEMLEDLHISQD 477
Query: 78 DMEEE 82
EE
Sbjct: 478 ATGEE 482
>gi|348534719|ref|XP_003454849.1| PREDICTED: 60S ribosomal export protein NMD3-like [Oreochromis
niloticus]
Length = 504
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 40/59 (67%), Gaps = 5/59 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 76
Y +F+ DLEED R+NVNI++ +IPV+ ++ +D AP ++L EML++L++ D
Sbjct: 439 YQDFLEDLEEDEALRKNVNIFRDASKIPVE-----SDTDDDGAPCVSLAEMLEELSLTD 492
>gi|195059016|ref|XP_001995545.1| GH17705 [Drosophila grimshawi]
gi|193896331|gb|EDV95197.1| GH17705 [Drosophila grimshawi]
Length = 525
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 6/63 (9%)
Query: 17 DYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTID 75
DY+EF++D+EE+V R +N+Y+ + IPVD + + D P+ITL EML+D+T++
Sbjct: 448 DYHEFLDDIEENVEIRGQINVYRDSKKTIPVD-----VQPDGADLPQITLAEMLEDMTLE 502
Query: 76 DVD 78
D
Sbjct: 503 CAD 505
>gi|327266844|ref|XP_003218214.1| PREDICTED: 60S ribosomal export protein NMD3-like [Anolis
carolinensis]
Length = 504
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 6/57 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
Y +F+ DLEED R+NVNIYK IPV++ +T+DE PRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDETIRKNVNIYK-NSGIPVES---DTDDE--GIPRISLAEMLEDLQI 489
>gi|193785612|dbj|BAG51047.1| unnamed protein product [Homo sapiens]
Length = 383
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV+ ++ +D APRI+L EML+DL I
Sbjct: 319 YQDFLEDLEEDEAIRKNVNIYRDSA-IPVE-----SDTDDEGAPRISLAEMLEDLHISQD 372
Query: 78 DMEEEVTS 85
EE S
Sbjct: 373 ATGEEGAS 380
>gi|115908403|ref|XP_788633.2| PREDICTED: 60S ribosomal export protein NMD3 [Strongylocentrotus
purpuratus]
Length = 513
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 9/64 (14%)
Query: 13 SANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVD-ANDINTEDEDPD-APRITLEEMLD 70
+A DY F+ DLEED YR+N+NIY VD + +I E D D AP+I+L+EML+
Sbjct: 439 AAERDYMGFLEDLEEDGDYRKNINIY-------VDRSKNIAVESSDEDAAPQISLQEMLE 491
Query: 71 DLTI 74
D I
Sbjct: 492 DFHI 495
>gi|301792240|ref|XP_002931087.1| PREDICTED: 60S ribosomal export protein NMD3-like [Ailuropoda
melanoleuca]
Length = 504
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 6/65 (9%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T++E APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDA-TIPVES---DTDEE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEE 82
EE
Sbjct: 493 ATGEE 497
>gi|344245933|gb|EGW02037.1| Histone H3.3 [Cricetulus griseus]
Length = 365
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ +PV++ +T+DE APRI+L EML+DL I
Sbjct: 301 YQDFLEDLEEDEAIRKNVNIYRDS-TVPVES---DTDDE--GAPRISLAEMLEDLHISQD 354
Query: 78 DMEEEVTS 85
EE S
Sbjct: 355 ATGEEGAS 362
>gi|195477750|ref|XP_002100295.1| GE16971 [Drosophila yakuba]
gi|194187819|gb|EDX01403.1| GE16971 [Drosophila yakuba]
Length = 521
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 17 DYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTID 75
DY+EF++DLEE+ R VNIY+ IP++ + D P+ITLEEML+D+T++
Sbjct: 448 DYHEFLDDLEENEDIRGQVNIYRDTNKTIPIE-----VQAAGGDVPQITLEEMLEDMTLE 502
Query: 76 DVD--MEEEVTSDQ 87
D M EE +D+
Sbjct: 503 CADDEMGEEGGADE 516
>gi|194383890|dbj|BAG59303.1| unnamed protein product [Homo sapiens]
Length = 323
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 6/57 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 259 YQDFLEDLEEDEAIRKNVNIYRDSA-IPVES---DTDDE--GAPRISLAEMLEDLHI 309
>gi|17137506|ref|NP_477332.1| Nonsense-mediated mRNA 3 [Drosophila melanogaster]
gi|2894111|emb|CAA15695.1| EG:152A3.1 [Drosophila melanogaster]
gi|7290283|gb|AAF45744.1| Nonsense-mediated mRNA 3 [Drosophila melanogaster]
gi|16197917|gb|AAL13723.1| GM14705p [Drosophila melanogaster]
gi|220944802|gb|ACL84944.1| Nmd3-PA [synthetic construct]
gi|220954642|gb|ACL89864.1| Nmd3-PA [synthetic construct]
Length = 521
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 8/73 (10%)
Query: 17 DYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTID 75
DY+EF++DLEE+ R VNIY+ IP++ + D P+ITLEEML+D+T++
Sbjct: 448 DYHEFLDDLEENEDIRGQVNIYRDTNKTIPIE-----VQAAGGDVPQITLEEMLEDMTLE 502
Query: 76 DVD--MEEEVTSD 86
D M EE +D
Sbjct: 503 CADDEMGEEGGAD 515
>gi|4753704|emb|CAB42049.1| Nmd3 protein [Drosophila melanogaster]
Length = 521
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 8/73 (10%)
Query: 17 DYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTID 75
DY+EF++DLEE+ R VNIY+ IP++ + D P+ITLEEML+D+T++
Sbjct: 448 DYHEFLDDLEENEDIRGQVNIYRDTNKTIPIE-----VQAAGGDVPQITLEEMLEDMTLE 502
Query: 76 DVD--MEEEVTSD 86
D M EE +D
Sbjct: 503 CADDEMGEEGGAD 515
>gi|67967886|dbj|BAE00425.1| unnamed protein product [Macaca fascicularis]
Length = 323
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 6/57 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 259 YQDFLEDLEEDEAIRKNVNIYRDST-IPVES---DTDDE--GAPRISLAEMLEDLHI 309
>gi|349602939|gb|AEP98922.1| 60S ribosomal export protein NMD3-like protein, partial [Equus
caballus]
Length = 185
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 40/57 (70%), Gaps = 6/57 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
Y +F+ DLEED R+NVN+Y+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 121 YQDFLEDLEEDEAIRKNVNVYRDST-IPVES---DTDDE--GAPRISLAEMLEDLHI 171
>gi|340373689|ref|XP_003385373.1| PREDICTED: 60S ribosomal export protein NMD3-like [Amphimedon
queenslandica]
Length = 504
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 17 DYNEFMNDLEEDVLYRQNVNIYKAGPE--IPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
D +FM DLEED YRQ++NIY + +PV+ + E+E+ P+I +EEML +LTI
Sbjct: 438 DLLDFMEDLEEDKTYRQDINIYMKPNDGVVPVENGGLTGEEEEESYPQIGVEEMLQNLTI 497
Query: 75 DD 76
D
Sbjct: 498 SD 499
>gi|242015181|ref|XP_002428252.1| Nonsense-mediated mRNA decay protein, putative [Pediculus humanus
corporis]
gi|212512813|gb|EEB15514.1| Nonsense-mediated mRNA decay protein, putative [Pediculus humanus
corporis]
Length = 506
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 37/58 (63%), Gaps = 10/58 (17%)
Query: 30 LYRQNVNIY---KAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTID---DVDMEE 81
YRQN+NIY K+ IPV +++ +DP PRITL EMLDDL ID D++M E
Sbjct: 453 NYRQNINIYKVEKSETTIPVTYDEM----DDPAFPRITLAEMLDDLQIDDNGDIEMNE 506
>gi|195456708|ref|XP_002075252.1| GK17003 [Drosophila willistoni]
gi|194171337|gb|EDW86238.1| GK17003 [Drosophila willistoni]
Length = 511
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 8/64 (12%)
Query: 17 DYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 76
DYNEF++DLEE R VNIY+ D+N E D D P+I L EML+DLT++
Sbjct: 444 DYNEFLDDLEEHEDLRGQVNIYR-------DSNKTAPEATD-DLPQINLAEMLEDLTLEC 495
Query: 77 VDME 80
D E
Sbjct: 496 ADDE 499
>gi|302772306|ref|XP_002969571.1| hypothetical protein SELMODRAFT_91517 [Selaginella moellendorffii]
gi|300163047|gb|EFJ29659.1| hypothetical protein SELMODRAFT_91517 [Selaginella moellendorffii]
Length = 516
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 17 DYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
+Y FM +LEED R + ++K + V A+ I EDED + P++ LEE+L DLT+
Sbjct: 445 EYERFMEELEEDPEMRSKIALFKN--PVAVAASSIAGEDEDGELPQVPLEELLGDLTL 500
>gi|194913036|ref|XP_001982614.1| GG12643 [Drosophila erecta]
gi|190648290|gb|EDV45583.1| GG12643 [Drosophila erecta]
Length = 521
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 8/69 (11%)
Query: 17 DYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTID 75
DY+EF++DLEE+ R VNIY+ IP++ + D P+ITLEEML+D+T++
Sbjct: 448 DYHEFLDDLEENEDIRGQVNIYRDTNKTIPIE-----LQAAGGDVPQITLEEMLEDMTLE 502
Query: 76 DVD--MEEE 82
D M EE
Sbjct: 503 CADDEMGEE 511
>gi|26330198|dbj|BAC28829.1| unnamed protein product [Mus musculus]
Length = 263
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 40/57 (70%), Gaps = 6/57 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
Y +F+ DLEED R++VNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 199 YQDFLEDLEEDEAIRKHVNIYRDAT-IPVES---DTDDE--GAPRISLAEMLEDLHI 249
>gi|402587812|gb|EJW81746.1| NMD3 family protein [Wuchereria bancrofti]
Length = 480
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
Query: 8 VPDTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEE 67
V D++S N++ F+ DLEED RQ +NIY+ + V + DI + + P P +L E
Sbjct: 411 VYDSSSMQNEFENFLEDLEEDEQMRQKINIYRDNAKQLVYSKDIAS--DLPPGP--SLHE 466
Query: 68 MLDDLTID-DVDM 79
MLDDL ++ DV+M
Sbjct: 467 MLDDLDLNADVEM 479
>gi|331243536|ref|XP_003334411.1| nonsense-mediated mRNA decay protein 3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|403161984|ref|XP_003322268.2| nonsense-mediated mRNA decay protein 3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309313401|gb|EFP89992.1| nonsense-mediated mRNA decay protein 3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375172013|gb|EFP77849.2| nonsense-mediated mRNA decay protein 3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 553
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 12/73 (16%)
Query: 12 ASANNDYNEFMNDLEEDVLYRQNVNIYKAGP---EIPVDANDI---------NTEDEDPD 59
A +Y F+ DLEED RQNV ++KA P ++P DA D+ TE +D D
Sbjct: 458 AKVEAEYEMFLRDLEEDPELRQNVQLFKAQPASKKLPADAMDLEGADTESVAETEMDDDD 517
Query: 60 APRITLEEMLDDL 72
P+I L+E+LD++
Sbjct: 518 FPKIQLDELLDEM 530
>gi|156844183|ref|XP_001645155.1| hypothetical protein Kpol_1062p4 [Vanderwaltozyma polyspora DSM
70294]
gi|156115813|gb|EDO17297.1| hypothetical protein Kpol_1062p4 [Vanderwaltozyma polyspora DSM
70294]
Length = 522
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEML 69
D A DY F+ +LEED RQ VN+YK+ ++ + + EDED DAP+I ++E+L
Sbjct: 444 DIERAERDYELFLQELEEDQELRQTVNLYKSSNPENIEEHGME-EDEDEDAPQIDIDELL 502
Query: 70 DDL---TIDD 76
D+L T+DD
Sbjct: 503 DELDEMTLDD 512
>gi|302774853|ref|XP_002970843.1| hypothetical protein SELMODRAFT_94368 [Selaginella moellendorffii]
gi|300161554|gb|EFJ28169.1| hypothetical protein SELMODRAFT_94368 [Selaginella moellendorffii]
Length = 516
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 17 DYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
+Y FM +LEED R + ++K + V A I EDED + P++ LEE+L DLT+
Sbjct: 445 EYERFMEELEEDPEMRSKIALFKN--PVAVAAPSIAGEDEDGELPQVPLEELLGDLTL 500
>gi|194768751|ref|XP_001966475.1| GF21978 [Drosophila ananassae]
gi|190617239|gb|EDV32763.1| GF21978 [Drosophila ananassae]
Length = 522
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 6/66 (9%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDL 72
+ +DY+EF++DLE+ R +NIY+ + P+D N+ D P+ITLEEM++D+
Sbjct: 446 SKHDYHEFLDDLEDHEDLRGQINIYRDSNKTAPIDLQAGNS-----DVPQITLEEMMEDM 500
Query: 73 TIDDVD 78
T++ D
Sbjct: 501 TLECAD 506
>gi|154339277|ref|XP_001562330.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062913|emb|CAM39360.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 563
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 13/90 (14%)
Query: 11 TASANNDYNEFMNDLEEDVLYRQNVNIYK---------AGPEIPVDANDINTEDEDPDAP 61
+ AN+D EF +++E D R++V IY+ GP + ++D + P
Sbjct: 457 SGGANDDEGEFEDEIERDAELRKDVAIYRMMDKEIEARGGPIAAAADAAEDEYEDDDEVP 516
Query: 62 RITLEEMLDDLTIDD----VDMEEEVTSDQ 87
I LEEMLD+L IDD D+EE + +D+
Sbjct: 517 EIALEEMLDELQIDDGVEPADVEESLMTDE 546
>gi|328871042|gb|EGG19414.1| 60S ribosomal export protein [Dictyostelium fasciculatum]
Length = 526
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTED----EDPDAPRITL 65
D A D +F+ ++EED R +NIYK G + I + ED + +TL
Sbjct: 426 DVEKAERDQQDFVREIEEDADMRSKINIYKQGNAAEILKQRIKHKKDSGYEDHEINEVTL 485
Query: 66 EEMLDDLTIDDVDMEE 81
EE+LD++ I+D D E
Sbjct: 486 EELLDEMDINDQDFGE 501
>gi|328863106|gb|EGG12206.1| hypothetical protein MELLADRAFT_46699 [Melampsora larici-populina
98AG31]
Length = 549
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 12/75 (16%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGP----------EIPVDAND-INTE-DED 57
D A +Y F+ DLEED RQNV ++KA P EI DA + TE DED
Sbjct: 454 DQAKVEAEYELFLRDLEEDPELRQNVQLFKAEPKQKKMAIDSMEIEGDAESVVETEMDED 513
Query: 58 PDAPRITLEEMLDDL 72
D P+I L+E+LD++
Sbjct: 514 DDFPKIQLDELLDEM 528
>gi|195398697|ref|XP_002057957.1| GJ15765 [Drosophila virilis]
gi|194150381|gb|EDW66065.1| GJ15765 [Drosophila virilis]
Length = 525
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 6/63 (9%)
Query: 17 DYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTID 75
DY+EF++D+EE+ R ++NIY+ + +P++ + D P+ITL EML+D+T+D
Sbjct: 448 DYHEFLDDIEENPDIRGHINIYRDSKKPLPIE-----VQPSAGDVPQITLAEMLEDMTLD 502
Query: 76 DVD 78
D
Sbjct: 503 CAD 505
>gi|170062484|ref|XP_001866689.1| NMD protein [Culex quinquefasciatus]
gi|167880370|gb|EDS43753.1| NMD protein [Culex quinquefasciatus]
Length = 348
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 17 DYNEFMNDLEEDVLYRQNVNIYKAGPE---IPVDANDINTEDEDPDAPRI 63
D NEF+ DLEED RQNV+I+K +PVD ND DP PRI
Sbjct: 231 DCNEFLEDLEEDPEMRQNVDIFKDAARQQSVPVDVND----KADPSVPRI 276
>gi|170054763|ref|XP_001863278.1| nonsense-mediated mRNA decay protein [Culex quinquefasciatus]
gi|167874965|gb|EDS38348.1| nonsense-mediated mRNA decay protein [Culex quinquefasciatus]
Length = 438
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 27/38 (71%), Gaps = 4/38 (10%)
Query: 44 IPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 81
+PVD ND+ DP PRI LEE+LDD+ +DDV+M +
Sbjct: 404 MPVDVNDM----ADPSGPRINLEELLDDMVLDDVEMSD 437
>gi|365984817|ref|XP_003669241.1| hypothetical protein NDAI_0C03380 [Naumovozyma dairenensis CBS 421]
gi|343768009|emb|CCD23998.1| hypothetical protein NDAI_0C03380 [Naumovozyma dairenensis CBS 421]
Length = 538
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINT----EDEDPDAPRITL 65
D A DY F+ +LEED RQ +N+YK EDEDPDAP+I +
Sbjct: 452 DMERAEKDYELFLQELEEDEEMRQTINLYKNNEAAAAAQIAAAANGMEEDEDPDAPQIDI 511
Query: 66 EEMLDDL---TIDD 76
+E+LD+L T+DD
Sbjct: 512 DELLDELDEMTLDD 525
>gi|363752964|ref|XP_003646698.1| hypothetical protein Ecym_5097 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890334|gb|AET39881.1| hypothetical protein Ecym_5097 [Eremothecium cymbalariae
DBVPG#7215]
Length = 509
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEML 69
D A DY F+ +LEED RQ +N+YK + PV ++ + ED DAP+I ++E+L
Sbjct: 438 DMERAERDYELFLQELEEDEEMRQTINLYKN--QKPVQEEEM-ADSEDEDAPQINIDELL 494
Query: 70 DDL---TIDDVDMEE 81
D+L T+DD+ E
Sbjct: 495 DELDEMTLDDLTTAE 509
>gi|444318629|ref|XP_004179972.1| hypothetical protein TBLA_0C06600 [Tetrapisispora blattae CBS 6284]
gi|387513013|emb|CCH60453.1| hypothetical protein TBLA_0C06600 [Tetrapisispora blattae CBS 6284]
Length = 525
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 13/78 (16%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKA-------GPEIPVDANDINTEDEDPDAPR 62
D A DY F+ +LEED RQ++N+YK+ G E + D ++D DAP
Sbjct: 445 DMERAERDYELFLQELEEDAELRQSINLYKSNKPAANQGTETAQNEQD----EQDADAPE 500
Query: 63 ITLEEMLDDLTIDDVDME 80
I ++E+LD+L DD+ +E
Sbjct: 501 INIDELLDEL--DDMTLE 516
>gi|260945473|ref|XP_002617034.1| hypothetical protein CLUG_02478 [Clavispora lusitaniae ATCC 42720]
gi|238848888|gb|EEQ38352.1| hypothetical protein CLUG_02478 [Clavispora lusitaniae ATCC 42720]
Length = 506
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDL 72
A DY F+ +LEED R+ +N+YKAG E P DA+D + D+D AP I ++E+LD++
Sbjct: 442 AERDYELFLQELEEDQELRKTINLYKAGEEAPQDADDEDEMDDDEVAPEIGIDELLDEI 500
>gi|384497741|gb|EIE88232.1| hypothetical protein RO3G_12943 [Rhizopus delemar RA 99-880]
Length = 481
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTED-EDPDAPRITLEEM 68
D A ND FM D+EED +R N+NI+K+ +D D + P I+LEEM
Sbjct: 398 DQARIENDMELFMRDIEEDPEFRANINIFKSQQNNAAVQQQEEVQDMSDEELPEISLEEM 457
Query: 69 LDDLTI 74
LD++ I
Sbjct: 458 LDEMAI 463
>gi|302675617|ref|XP_003027492.1| 60S ribosomal export protein NMD3 [Schizophyllum commune H4-8]
gi|300101179|gb|EFI92589.1| hypothetical protein SCHCODRAFT_70539 [Schizophyllum commune H4-8]
Length = 558
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 26/101 (25%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGP----------------------EIPVD 47
D + DY F+ +LEED R VN+YKAG E+
Sbjct: 458 DQKKVDEDYELFLRELEEDPELRATVNLYKAGDVKMSDGAARPAGAGKKRAQFAMEVDEA 517
Query: 48 ANDINTEDED-PDAPRITLEEML---DDLTIDDVDMEEEVT 84
DI TE ED PD P + L+E+L D++T+++ D+ V+
Sbjct: 518 GQDIETEAEDEPDFPDVKLDELLEGFDEMTLNENDVAAVVS 558
>gi|301121887|ref|XP_002908670.1| 60S ribosomal export protein NMD3, putative [Phytophthora infestans
T30-4]
gi|262099432|gb|EEY57484.1| 60S ribosomal export protein NMD3, putative [Phytophthora infestans
T30-4]
Length = 524
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYK--AGPEIPVDANDINTEDEDPDAPRITLEE 67
D + DY +FM++LEED R +N+YK P P +D +++D AP + L E
Sbjct: 433 DLSKEEQDYEQFMDELEEDKEMRSQINLYKDETKPAQPA-EDDDAMDEDDVGAPAVELHE 491
Query: 68 MLDDLTIDDVDMEEEVTSD 86
+LDDL + D D ++ S+
Sbjct: 492 LLDDLAMKDDDPTPQILSE 510
>gi|440796559|gb|ELR17668.1| RNA binding protein [Acanthamoeba castellanii str. Neff]
Length = 508
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 15 NNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDL 72
N+DY FM +LEED R +N+YK P + + T++E D P ++E++D+L
Sbjct: 442 NHDYETFMQELEEDPELRAGLNLYKVPGAAPAASGGMETDEEAEDLPEPGVDELIDEL 499
>gi|195134220|ref|XP_002011535.1| GI11082 [Drosophila mojavensis]
gi|193906658|gb|EDW05525.1| GI11082 [Drosophila mojavensis]
Length = 522
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 6/63 (9%)
Query: 17 DYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTID 75
DY+EF++D+EE+ R +N+Y+ + +P++ T D P+ITL EML+D+T++
Sbjct: 446 DYHEFLDDIEENPDIRGQINVYRDSKKTLPIEVLQSAT-----DVPQITLAEMLEDMTLE 500
Query: 76 DVD 78
D
Sbjct: 501 CAD 503
>gi|225710644|gb|ACO11168.1| 60S ribosomal export protein NMD3 [Caligus rogercresseyi]
Length = 514
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 7/65 (10%)
Query: 13 SANNDYNEFMNDLEEDVLYRQNVNIYKAGPE--IPVDANDINTEDEDPDAPRITLEEMLD 70
S N + +F+ D+EEDV R+++NIYK + IPVD +++D + P ++L EML+
Sbjct: 438 SDNPEMTDFLEDIEEDVELRKHINIYKDPKKLSIPVD-----QDEDDTEIPGVSLAEMLE 492
Query: 71 DLTID 75
+++
Sbjct: 493 SFSLN 497
>gi|385304926|gb|EIF48926.1| putative 60s ribosomal subunit nuclear export factor nmd3 [Dekkera
bruxellensis AWRI1499]
Length = 516
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTED-EDPDAPRITLEEMLDDL 72
A DY F+ DLEED RQ+VN+YKA + D ED DAP + ++E+LD+L
Sbjct: 450 AERDYEIFLEDLEEDKELRQSVNMYKANDTTNAXXSSAPXSDSEDSDAPEVNVDELLDEL 509
>gi|384248530|gb|EIE22014.1| NMD3-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 540
Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 17 DYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDIN----TEDEDPDAPRITLEEMLDDL 72
D FM +LEED R + +Y+ PV + T+DED D P + LEE+LDDL
Sbjct: 459 DLERFMQELEEDPELRAKMALYRDPAYNPVAEAERRAAAMTDDEDGDVPEVPLEELLDDL 518
>gi|344303871|gb|EGW34120.1| nonsense-mediated mRNA decay protein 3 [Spathaspora passalidarum
NRRL Y-27907]
Length = 516
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEM---LD 70
A DY F+ +LEED RQ +N+YKAG PV ++ + ++ED DAP I ++E+ LD
Sbjct: 446 AERDYELFLQELEEDEELRQTINLYKAGENAPVKSHGDDEDEEDEDAPEIGIDELLDELD 505
Query: 71 DLTIDDVDMEE 81
D+T++D MEE
Sbjct: 506 DMTLEDTPMEE 516
>gi|384495175|gb|EIE85666.1| hypothetical protein RO3G_10376 [Rhizopus delemar RA 99-880]
Length = 478
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTED-EDPDAPRITLEEM 68
D A ND FM D+EED +R N+NI+K V ++ ED D + P I+LEEM
Sbjct: 399 DQARIENDMELFMRDIEEDPEFRANINIFKNEGNNAVHPEEV--EDMSDEELPEISLEEM 456
Query: 69 LDDLTI 74
LD++ I
Sbjct: 457 LDEMAI 462
>gi|302308280|ref|NP_985156.2| 60S ribosomal export protein NMD3 [Ashbya gossypii ATCC 10895]
gi|299789379|gb|AAS52980.2| AER299Cp [Ashbya gossypii ATCC 10895]
gi|374108381|gb|AEY97288.1| FAER299Cp [Ashbya gossypii FDAG1]
Length = 512
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEML 69
D A DY F+ +LEED RQ +N+YK PVD+ ++ ++ D +AP+I ++E+L
Sbjct: 439 DQERAERDYELFLQELEEDQEMRQAINLYKNSK--PVDSEEM--QETDDEAPQIDIDELL 494
Query: 70 DDL 72
D+L
Sbjct: 495 DEL 497
>gi|449678782|ref|XP_004209161.1| PREDICTED: 60S ribosomal export protein NMD3-like [Hydra
magnipapillata]
Length = 488
Score = 42.0 bits (97), Expect = 0.053, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 45/68 (66%), Gaps = 6/68 (8%)
Query: 15 NNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
N+DY EF+ DLEED YR +NIY+ ++ +D++ DAP+I+LEEM+DDL I
Sbjct: 423 NDDYEEFLEDLEEDKEYRMGLNIYRDRSKVSQSESDLD------DAPQISLEEMMDDLQI 476
Query: 75 DDVDMEEE 82
+D ME +
Sbjct: 477 EDHPMESD 484
>gi|302895403|ref|XP_003046582.1| 60S ribosomal export protein NMD3 [Nectria haematococca mpVI
77-13-4]
gi|256727509|gb|EEU40869.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 518
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 16 NDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDD---L 72
+Y +F+ D+EED R + +YKA + + + TE+ D +AP + ++E+LDD L
Sbjct: 450 REYEQFLRDVEEDEELRATLALYKAKKKAEEEMSIAETEEGDDEAPHVDMDELLDDFDEL 509
Query: 73 TIDDVDME 80
T++D M+
Sbjct: 510 TVEDRQMQ 517
>gi|61806709|ref|NP_001013587.1| 60S ribosomal export protein NMD3 [Danio rerio]
gi|82178735|sp|Q5BLF0.1|NMD3_DANRE RecName: Full=60S ribosomal export protein NMD3
gi|60649637|gb|AAH90467.1| NMD3 homolog (S. cerevisiae) [Danio rerio]
Length = 505
Score = 41.6 bits (96), Expect = 0.063, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 30 LYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 76
+ R+N+NI++ +IPV+ + +T+D+ APRI+L EML+DL++ D
Sbjct: 451 MLRKNINIFRDASKIPVEES--DTDDD--GAPRISLAEMLEDLSLSD 493
>gi|430813858|emb|CCJ28843.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 527
Score = 41.2 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDA---PRITLE 66
D +DY F+ DLEED+ R+NVN+YK NTED+ D+ P I +
Sbjct: 466 DQTCFEDDYECFLQDLEEDIELRRNVNLYKTKMNCQKTFMATNTEDDVSDSEEFPEIDVS 525
Query: 67 EM 68
E+
Sbjct: 526 EL 527
>gi|255585695|ref|XP_002533531.1| nonsense-mediated mRNA decay protein, putative [Ricinus communis]
gi|223526598|gb|EEF28848.1| nonsense-mediated mRNA decay protein, putative [Ricinus communis]
Length = 511
Score = 41.2 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEML 69
D + +Y +F+ DLEE+ R NV++Y+ P +++ + + D P I LEE+L
Sbjct: 438 DQEKMDTEYEQFLRDLEENAELRFNVSLYRNKEYQP---SEMASVTDGEDVPSIPLEELL 494
Query: 70 DDLTIDDVD 78
DL I +++
Sbjct: 495 ADLDISEME 503
>gi|325181410|emb|CCA15826.1| 60S ribosomal export protein NMD3 putative [Albugo laibachii Nc14]
Length = 526
Score = 41.2 bits (95), Expect = 0.087, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 12 ASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDP--DAPRITLEEML 69
A + +Y F+++LE+D R +NIYK E A D + D+D A I L EML
Sbjct: 439 ADDSMEYESFLDELEDDQAMRGQINIYKEQAE----AQDSSQPDDDEGMQASSIPLSEML 494
Query: 70 DDLTIDDVDME 80
DDLT + E
Sbjct: 495 DDLTFEKKSSE 505
>gi|407420941|gb|EKF38750.1| hypothetical protein MOQ_001039 [Trypanosoma cruzi marinkellei]
Length = 535
Score = 40.8 bits (94), Expect = 0.097, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 9/68 (13%)
Query: 23 NDLEEDVLYRQNVNIYKA-----GPEIPVDAND---INTE-DEDPDAPRITLEEMLDDLT 73
+DLE D +R++V IYK + ND + E DE+ + P+I LEEMLD+L
Sbjct: 452 DDLERDAEFRRDVPIYKLSEFELAQRAVTNGNDYMEVEEEGDENDEVPQIALEEMLDELR 511
Query: 74 IDDVDMEE 81
I+D ++E
Sbjct: 512 IEDDTLDE 519
>gi|449295746|gb|EMC91767.1| hypothetical protein BAUCODRAFT_304165 [Baudoinia compniacensis
UAMH 10762]
Length = 520
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
Query: 17 DYNEFMNDLEEDVLYRQNVNIYK----AGPEIPVDANDINTEDEDPDAPRITLEEMLDDL 72
DY +F+ DLE D R+ + +Y+ P+ DA D+ T+ ED D I +E+++D++
Sbjct: 451 DYEQFLQDLEADPELREGLKMYRNRDALQPDAVADAGDMETDGEDDDGLEIPMEQLIDEM 510
Query: 73 TIDDVDMEEE 82
+D+ ME+E
Sbjct: 511 --EDMGMEDE 518
>gi|68488743|ref|XP_711797.1| likely 60s ribosomal subunit nuclear export factor NMD3 [Candida
albicans SC5314]
gi|68488780|ref|XP_711779.1| likely 60s ribosomal subunit nuclear export factor NMD3 [Candida
albicans SC5314]
gi|46433103|gb|EAK92557.1| likely 60s ribosomal subunit nuclear export factor NMD3 [Candida
albicans SC5314]
gi|46433122|gb|EAK92575.1| likely 60s ribosomal subunit nuclear export factor NMD3 [Candida
albicans SC5314]
gi|238880086|gb|EEQ43724.1| nonsense-mediated mRNA decay protein 3 [Candida albicans WO-1]
Length = 520
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIP-VDAND----INTEDEDPDAPRITLEEM 68
A DY F+ +LEED RQ +N+YKAG P V N ED+D DAP I ++E+
Sbjct: 446 AERDYELFLQELEEDDELRQTINLYKAGENQPQVSRNHDDMNDEDEDDDEDAPEIGIDEL 505
Query: 69 ---LDDLTIDDVDM 79
LDD+T+DD M
Sbjct: 506 LDELDDMTLDDTPM 519
>gi|340960081|gb|EGS21262.1| putative nonsense-mediated mRNA decay protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 824
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYK-----AGPEIPVDANDINTEDEDPDAPRIT 64
D A +++Y F+ D+EED R + +YK P+ DA I ++D D P+I+
Sbjct: 748 DQARMDDEYEAFLRDVEEDEELRATLALYKNTRKTKKPQQDADAMSIAETEDDDDGPKIS 807
Query: 65 LEEMLDDLTIDDVDME 80
++E+LDD +D+D++
Sbjct: 808 MDELLDDF--EDLDIQ 821
>gi|224080157|ref|XP_002306035.1| predicted protein [Populus trichocarpa]
gi|222848999|gb|EEE86546.1| predicted protein [Populus trichocarpa]
Length = 511
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 2 TDATNIVPDTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAP 61
D T D N++Y +F+ DLEE+ R NV++Y+ P +++ + + D P
Sbjct: 430 VDDTRARGDQEKMNSEYEQFLRDLEENPELRFNVSLYRNKEYQP---SEMASMTDGEDIP 486
Query: 62 RITLEEMLDDLTIDDVDMEEE 82
I LEE+L DL I+D + E+E
Sbjct: 487 SIPLEELLADLEINDAEDEDE 507
>gi|294933199|ref|XP_002780647.1| nonsense-mediated mRNA decay protein, putative [Perkinsus marinus
ATCC 50983]
gi|239890581|gb|EER12442.1| nonsense-mediated mRNA decay protein, putative [Perkinsus marinus
ATCC 50983]
Length = 547
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 13 SANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDAN-------DINTEDEDPDAPRITL 65
S + DY +FM D+EED RQ +N+++ P N + E +D +AP + L
Sbjct: 437 SNDGDYEQFMRDIEEDKDLRQEINLFR-DPAWKEPCNVGAAQEGEEEGEADDNEAPEVDL 495
Query: 66 EEMLDDLTIDD 76
E+LD LT++D
Sbjct: 496 AELLDGLTLND 506
>gi|255719250|ref|XP_002555905.1| 60S ribosomal export protein NMD3 [Lachancea thermotolerans CBS
6340]
gi|238941871|emb|CAR30043.1| KLTH0H00594p [Lachancea thermotolerans CBS 6340]
Length = 512
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDL 72
A DY F+ +LEED RQ VN+YK+ + P + EDE+ DAP+I ++E+LD+L
Sbjct: 444 AEKDYELFLQELEEDAEMRQAVNLYKSAQQAP--QDGEMDEDEEEDAPQIDIDELLDEL 500
>gi|336375778|gb|EGO04114.1| hypothetical protein SERLA73DRAFT_102468 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388897|gb|EGO30041.1| hypothetical protein SERLADRAFT_433969 [Serpula lacrymans var.
lacrymans S7.9]
Length = 558
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 32/104 (30%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKA----------------------------- 40
D + DY F+ DLEED R VN+YKA
Sbjct: 454 DNKKVDEDYELFLRDLEEDPEMRGAVNLYKAKDVKMREVGSGDKTTRKGQYGMDVDEGMD 513
Query: 41 GPEIPVDANDINTEDEDPDAPRITLEEML---DDLTIDDVDMEE 81
P + D D +E+PD P + L+E+L DD+T+ D + +E
Sbjct: 514 APSMGGDDEDKEAGEEEPDFPEVKLDELLEDFDDMTLGDSEDKE 557
>gi|170584344|ref|XP_001896961.1| NMD3 family protein [Brugia malayi]
gi|158595650|gb|EDP34189.1| NMD3 family protein [Brugia malayi]
Length = 501
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 8 VPDTASANNDYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLE 66
V D++S N++ F+ DLEED RQ +NIY+ + + DI + + P P +L
Sbjct: 431 VYDSSSMENEFENFLEDLEEDEQMRQKINIYRDNAKQQAAYSKDIAS--DLPPGP--SLH 486
Query: 67 EMLDDLTID-DVDM 79
EMLDDL ++ DV+M
Sbjct: 487 EMLDDLDLNADVEM 500
>gi|408399668|gb|EKJ78764.1| hypothetical protein FPSE_01043 [Fusarium pseudograminearum CS3096]
Length = 517
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 16 NDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDD---L 72
+Y +F+ D+EED R + +YKA + + TE ED +AP + +EE+LDD L
Sbjct: 450 QEYEQFLRDVEEDEELRATLALYKAQKRAEEEMSVAETE-EDDEAPHVDMEELLDDFDEL 508
Query: 73 TIDDVDME 80
T+ D ME
Sbjct: 509 TVQDRPME 516
>gi|361127637|gb|EHK99598.1| putative 60S ribosomal export protein NMD3 [Glarea lozoyensis
74030]
Length = 352
Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 16 NDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDIN---TEDEDPDAPRITLEEMLDDL 72
NDY F+ D+EED R + +YK + DA ++ T+D D + P++ +EE+LD+
Sbjct: 283 NDYEMFLRDVEEDAELRATMALYKEQQQAKRDAEAMSVAETDDADDETPKVNMEELLDEF 342
>gi|367016341|ref|XP_003682669.1| 60S ribosomal export protein NMD3 [Torulaspora delbrueckii]
gi|359750332|emb|CCE93458.1| hypothetical protein TDEL_0G00910 [Torulaspora delbrueckii]
Length = 517
Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLT 73
A DY F+ +LEED RQ VN+YK+ + A E+++ DAP+I ++E+LD+L
Sbjct: 446 AERDYEVFLQELEEDDELRQGVNLYKSAGQ--ASAEHEMEEEDEEDAPQIDIDELLDEL- 502
Query: 74 IDDVDME 80
DD+ +E
Sbjct: 503 -DDMTLE 508
>gi|167537058|ref|XP_001750199.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771361|gb|EDQ85029.1| predicted protein [Monosiga brevicollis MX1]
Length = 521
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 13 SANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDL 72
+A D + FM+D+EED YRQN N+YK P +TE E D I ++E+LD+
Sbjct: 454 AAMRDLDAFMDDIEEDREYRQNFNLYKNAEYHP------STESEGEDDLHIGVDELLDEF 507
Query: 73 TIDDVD 78
D+D
Sbjct: 508 ENMDLD 513
>gi|398016987|ref|XP_003861681.1| hypothetical protein, conserved [Leishmania donovani]
gi|322499908|emb|CBZ34982.1| hypothetical protein, conserved [Leishmania donovani]
Length = 563
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 12 ASANNDYNEFMNDLEEDVLYRQNVNIYKAGPE---------IPVDANDINTEDEDPDAPR 62
+ AN D EF +++E D R+ + IY+ E N ++D + P
Sbjct: 458 SGANEDECEFEDEIERDAELRKEIAIYRMMDEEIAARRGTAATAADAAENEYEDDDEIPE 517
Query: 63 ITLEEMLDDLTIDD 76
I LEEMLD+L IDD
Sbjct: 518 IALEEMLDELQIDD 531
>gi|255721895|ref|XP_002545882.1| nonsense-mediated mRNA decay protein 3 [Candida tropicalis
MYA-3404]
gi|240136371|gb|EER35924.1| nonsense-mediated mRNA decay protein 3 [Candida tropicalis
MYA-3404]
Length = 516
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEM---LD 70
A DY F+ +LEED RQ +N+YKAG E P D +++D DAP I ++E+ LD
Sbjct: 446 AERDYELFLQELEEDEELRQTINLYKAGEEAPRKEVDEMDDEDDEDAPEIAIDELLDELD 505
Query: 71 DLTIDDVDMEE 81
D+T+DD M E
Sbjct: 506 DMTLDDTPMNE 516
>gi|358053876|dbj|GAB00009.1| hypothetical protein E5Q_06711 [Mixia osmundae IAM 14324]
Length = 534
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 12 ASANNDYNEFMNDLEEDVLYRQNVNIYKA-GPEIPVDANDINT---EDEDPDAPRI 63
A A DY F+ D+EED RQ VN+YK P+ VD D+ + + D D PRI
Sbjct: 452 ARAEADYEAFLRDIEEDEEMRQGVNLYKKPKPQAAVDTMDVESVADTEADDDFPRI 507
>gi|294894098|ref|XP_002774735.1| nonsense-mediated mRNA decay protein, putative [Perkinsus marinus
ATCC 50983]
gi|239880262|gb|EER06551.1| nonsense-mediated mRNA decay protein, putative [Perkinsus marinus
ATCC 50983]
Length = 121
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 13 SANNDYNEFMNDLEEDVLYRQNVNIYK--AGPE---IPVDANDINTEDEDPDAPRITLEE 67
S + DY +FM D+EED RQ +N+++ A E + + E +D +AP + L E
Sbjct: 41 SNDGDYEQFMRDIEEDKDLRQEINLFRDPAWKEPCNVAAAQEEEEGEADDNEAPEVDLAE 100
Query: 68 MLDDLTIDDVDMEEEVTSDQ 87
+LD LT++D ++E D+
Sbjct: 101 LLDGLTLNDKGSQQEEEDDE 120
>gi|367004052|ref|XP_003686759.1| 60S ribosomal export protein NMD3 [Tetrapisispora phaffii CBS 4417]
gi|357525061|emb|CCE64325.1| hypothetical protein TPHA_0H01170 [Tetrapisispora phaffii CBS 4417]
Length = 526
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEML 69
D A DY F+ +LEED RQ +N+YK+ + E+ED DAP I ++E+L
Sbjct: 443 DIERAERDYELFLQELEEDQELRQTINLYKS--QKQEQEEHEMEEEEDADAPAIDIDELL 500
Query: 70 DDL---TIDD 76
D+L T+DD
Sbjct: 501 DELDEMTLDD 510
>gi|320164255|gb|EFW41154.1| RNA binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 550
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDIN-------TEDEDPDAPR 62
D A D+ F+ DLEED R N+N+Y+ P + + A + E E + P
Sbjct: 397 DEEKAVADFEGFLEDLEEDRELRANINLYR-DPNVDLQAAQLAEIERRQYLEQEGEEDPS 455
Query: 63 ITLEEMLDDLTIDD 76
+ LEE+L+D++I+D
Sbjct: 456 VGLEELLEDMSIND 469
>gi|378727772|gb|EHY54231.1| nonsense-mediated mRNA decay protein 3 [Exophiala dermatitidis
NIH/UT8656]
Length = 515
Score = 38.9 bits (89), Expect = 0.45, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINT---EDEDPDAPRITLE 66
D + DY F+ D+EED RQ + +YKA + DA++++ E + + P+I ++
Sbjct: 442 DQERMDADYEMFLRDVEEDEELRQTLALYKAQQQ-KKDADEMSMATGESSEDEVPQINMD 500
Query: 67 EMLDDL 72
E+LDD
Sbjct: 501 ELLDDF 506
>gi|401625385|gb|EJS43395.1| nmd3p [Saccharomyces arboricola H-6]
Length = 518
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDL- 72
A DY F+ +LEED RQ+VN+YK EDED DAP+I ++E+LD+L
Sbjct: 442 AEKDYELFLQELEEDAELRQSVNLYKNQVATAPAEEHEMDEDEDEDAPQINIDELLDELD 501
Query: 73 --TIDD 76
T+DD
Sbjct: 502 EMTLDD 507
>gi|342879412|gb|EGU80660.1| hypothetical protein FOXB_08801 [Fusarium oxysporum Fo5176]
Length = 517
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 16 NDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDD---L 72
+Y +F+ D+EED R + +YKA + + TE ED +AP + + E+LDD L
Sbjct: 450 QEYEQFLRDVEEDEELRATLALYKAKKRAEEEMSVAETE-EDDEAPHVDMNELLDDFDEL 508
Query: 73 TIDDVDMEE 81
T++D M+E
Sbjct: 509 TMEDRPMQE 517
>gi|406868628|gb|EKD21665.1| nonsense-mediated mRNA decay protein 3 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 535
Score = 38.1 bits (87), Expect = 0.65, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDI--NTEDEDPDAPRITLEE 67
D + DY F+ D+EED RQ + ++KA + +A + ++ E+ + P+I ++E
Sbjct: 448 DQDRMDKDYEMFLRDVEEDEELRQTMALFKAQQKRDAEAMSVVETSDGEEDETPKINMDE 507
Query: 68 MLDDL 72
+LD+
Sbjct: 508 LLDEF 512
>gi|346973435|gb|EGY16887.1| nonsense-mediated mRNA decay protein [Verticillium dahliae VdLs.17]
Length = 502
Score = 38.1 bits (87), Expect = 0.66, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDIN---TEDEDPDAPRITLE 66
D + Y +F+ D+EED YR + +YK+ VD + ++ TE ED + P++ +
Sbjct: 431 DQDRMDAQYEQFLQDVEEDEEYRATMALYKSQQPQRVDPDAMSIAETEGED-EGPKVDMN 489
Query: 67 EMLDDL 72
E+L+D+
Sbjct: 490 ELLEDM 495
>gi|254580335|ref|XP_002496153.1| 60S ribosomal export protein NMD3 [Zygosaccharomyces rouxii CBS
732]
gi|238939044|emb|CAR27220.1| ZYRO0C11704p [Zygosaccharomyces rouxii]
Length = 512
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYKA-GPEIPVDANDINTEDEDPDAPRITLEEMLDDL 72
A DY F+ +LEED RQ+VN+Y++ P PV+ D++ ++++ PRI ++E+LD+L
Sbjct: 443 AEMDYETFLQELEEDSELRQSVNLYRSNNPPEPVNEGDMDEDEDEA-TPRINMDELLDEL 501
>gi|395325924|gb|EJF58339.1| NMD3-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 552
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 29/99 (29%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGP--------------------EIPVD-- 47
D DY F+ +LEED R VN+Y+A ++ VD
Sbjct: 454 DQKKVEEDYELFLRELEEDEEMRGAVNLYRAQKPGAGSGLAGGKTRRKGQGQFDMDVDEH 513
Query: 48 --ANDINTE---DEDPDAPRITLEEMLDDLTIDDVDMEE 81
A D TE +E+PD P++ L+E+L+D DD+ +E+
Sbjct: 514 ASAPDAGTETDAEEEPDFPQVKLDELLEDF--DDMTLED 550
>gi|388579793|gb|EIM20113.1| NMD3-domain-containing protein, partial [Wallemia sebi CBS 633.66]
Length = 487
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTED-----EDPDAPRIT 64
DT Y EF+NDLEED R VN+YK+ + D N+++ D ED + P+
Sbjct: 415 DTDKVEKQYEEFLNDLEEDPEMRAGVNLYKSEEQQTKDENEMDESDGGELEEDENLPK-- 472
Query: 65 LEEMLDDL 72
++E+L+DL
Sbjct: 473 MDELLEDL 480
>gi|302407027|ref|XP_003001349.1| 60S ribosomal export protein NMD3 [Verticillium albo-atrum
VaMs.102]
gi|261359856|gb|EEY22284.1| nonsense-mediated mRNA decay protein [Verticillium albo-atrum
VaMs.102]
Length = 502
Score = 38.1 bits (87), Expect = 0.75, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDIN---TEDEDPDAPRITLE 66
D + Y +F+ D+EED YR + +YK+ VD + ++ TE ED + P++ +
Sbjct: 431 DQDRMDAQYEQFLQDVEEDEEYRATMALYKSQQPQRVDPDAMSIAETEGED-EGPKVDMT 489
Query: 67 EMLDDL 72
E+L+D+
Sbjct: 490 ELLEDM 495
>gi|50302583|ref|XP_451227.1| 60S ribosomal export protein NMD3 [Kluyveromyces lactis NRRL
Y-1140]
gi|49640358|emb|CAH02815.1| KLLA0A05159p [Kluyveromyces lactis]
Length = 514
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDL- 72
A DY F+ +LEED RQ +N+YK+ P + EDED DAP+I ++E+LD+L
Sbjct: 443 AERDYEIFLQELEEDEEMRQTINLYKSNK--PAEHEGEMEEDEDEDAPQIDIDELLDELD 500
Query: 73 --TIDDVDMEEEV 83
T++D EE+
Sbjct: 501 EMTLEDQQQGEEM 513
>gi|157276571|gb|ABV28352.1| nonsense-mediated mRNA decary protein 3 [Taiwania cryptomerioides]
Length = 515
Score = 37.7 bits (86), Expect = 0.78, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEML 69
+ A DY +F+ +LEED R + +Y+ P + + + D P + LEE+L
Sbjct: 441 EDAKEVQDYEKFLEELEEDQEMRSKIALYRNKNYQPSETASMT---DGEDGPAVPLEELL 497
Query: 70 DDLTI 74
+DLT+
Sbjct: 498 NDLTL 502
>gi|46136489|ref|XP_389936.1| hypothetical protein FG09760.1 [Gibberella zeae PH-1]
Length = 517
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 16 NDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDD---L 72
+Y +F+ D+EED R + +YKA + + TE ED +AP + ++E+LDD L
Sbjct: 450 QEYEQFLRDVEEDEELRATLALYKAQKRAEEEMSVAETE-EDDEAPHVDMDELLDDFDEL 508
Query: 73 TIDDVDME 80
T+ D ME
Sbjct: 509 TVQDRPME 516
>gi|255956303|ref|XP_002568904.1| Pc21g19130 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590615|emb|CAP96810.1| Pc21g19130 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 527
Score = 37.7 bits (86), Expect = 0.80, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYK-----AGPEIPVDANDINTEDEDPDAPRIT 64
+ A DY F+ D+EED RQ +++YK A P+ + +D + +++ P+I
Sbjct: 452 EQARMEQDYEMFLRDVEEDQELRQTLDLYKNRQYQARPDQMDEDDDEDMDEDGNAVPKIN 511
Query: 65 LEEMLDDLTIDDVDMEE 81
++E+LDD D+++ME+
Sbjct: 512 MDELLDDF--DELNMED 526
>gi|297818032|ref|XP_002876899.1| nonsense-mediated mRNA decay NMD3 family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297322737|gb|EFH53158.1| nonsense-mediated mRNA decay NMD3 family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 516
Score = 37.7 bits (86), Expect = 0.84, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEML 69
D + +Y EF+ DLEE+ R N+++YK + A++ + + AP + +EE+L
Sbjct: 439 DPEKTDKEYEEFLRDLEENPELRFNISLYK---DKDYQASETASMTDGEGAPSVPIEELL 495
Query: 70 DDLTI 74
DL +
Sbjct: 496 ADLDL 500
>gi|290993544|ref|XP_002679393.1| predicted protein [Naegleria gruberi]
gi|284093009|gb|EFC46649.1| predicted protein [Naegleria gruberi]
Length = 452
Score = 37.7 bits (86), Expect = 0.84, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 16 NDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
NDY+ F+NDLEED R V ++K + A+ I D D PR+ LEE+L+ TI
Sbjct: 396 NDYDAFLNDLEEDQDMRSKVMLFKHENSGSI-ASKIKF-DSDGKNPRVRLEELLEAWTI 452
>gi|146089650|ref|XP_001470437.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134070470|emb|CAM68813.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 563
Score = 37.7 bits (86), Expect = 0.90, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 12 ASANNDYNEFMNDLEEDVLYRQNVNIYKAGPE---------IPVDANDINTEDEDPDAPR 62
+ N D EF +++E D R+ + IY+ E N ++D + P
Sbjct: 458 SGVNEDECEFEDEIERDAELRKEIAIYRMMDEEIAARRGTAATAADAAENEYEDDDEIPE 517
Query: 63 ITLEEMLDDLTIDD 76
I LEEMLD+L IDD
Sbjct: 518 IALEEMLDELQIDD 531
>gi|299472700|emb|CBN79871.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 565
Score = 37.7 bits (86), Expect = 0.97, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAG---PEIPVDANDINTEDEDPDAPRITLE 66
D A+A DY F+ LE D R+ VN+YK G D + + E+ D + L+
Sbjct: 457 DEAAAEKDYERFLQQLESDKDMRRQVNLYKQGLAAKPAAADGDGAMEDVEEMDEEEVRLD 516
Query: 67 EMLDDLTIDDVD 78
E+LD +T+D+ +
Sbjct: 517 ELLDAMTLDNAN 528
>gi|224079509|ref|XP_002305882.1| predicted protein [Populus trichocarpa]
gi|222848846|gb|EEE86393.1| predicted protein [Populus trichocarpa]
Length = 511
Score = 37.7 bits (86), Expect = 0.98, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 3 DATNIVPDTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPR 62
D T D N++Y +F+ DLEE+ R NV++Y+ P +++ + + D P
Sbjct: 431 DDTRARGDQEKMNSEYEQFLRDLEENPELRFNVSLYRNKEYQP---SEMASMTDGEDIPS 487
Query: 63 ITLEEML 69
I LEE+L
Sbjct: 488 IPLEELL 494
>gi|330790753|ref|XP_003283460.1| hypothetical protein DICPUDRAFT_147142 [Dictyostelium purpureum]
gi|325086570|gb|EGC39957.1| hypothetical protein DICPUDRAFT_147142 [Dictyostelium purpureum]
Length = 518
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINT-----EDEDPDAPRIT 64
D D +F+N++EED R +NIYKA + I DED +++
Sbjct: 418 DIERMERDKEDFLNEIEEDPEMRSKINIYKAPDAAQILKERIKKMEELGMDEDAIKAQLS 477
Query: 65 LEEMLDDLTIDDVDMEEEV 83
++E+LD+ D++ M +EV
Sbjct: 478 MDELLDEF--DNITMNDEV 494
>gi|348684719|gb|EGZ24534.1| hypothetical protein PHYSODRAFT_480926 [Phytophthora sojae]
Length = 510
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEM 68
D + DY +F+++LEED R +N+YK + +D E++D AP + L E+
Sbjct: 419 DLSKEEQDYEQFLDELEEDKEMRSQINLYKDETKQTKPSEDDDAMEEDDVGAPAVELHEL 478
Query: 69 LDDLTIDDVDMEEEVTSD 86
LDDL + + + ++ S+
Sbjct: 479 LDDLAMKEDEPTPQILSE 496
>gi|15227711|ref|NP_178476.1| nonsense-mediated mRNA decay protein 3 [Arabidopsis thaliana]
gi|4582430|gb|AAD24816.1| putative nonsense-mediated mRNA decay protein [Arabidopsis
thaliana]
gi|20466624|gb|AAM20629.1| putative nonsense-mediated mRNA decay protein [Arabidopsis
thaliana]
gi|22136400|gb|AAM91278.1| putative nonsense-mediated mRNA decay protein [Arabidopsis
thaliana]
gi|330250660|gb|AEC05754.1| nonsense-mediated mRNA decay protein 3 [Arabidopsis thaliana]
Length = 516
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEML 69
D + +Y EF+ DLEE+ R N+++Y+ + A++ + + AP + +EE+L
Sbjct: 439 DPEKTDKEYEEFLRDLEENPELRFNISLYR---DKDYQASETASMTDGEGAPSVPIEELL 495
Query: 70 DDLTI 74
DL +
Sbjct: 496 ADLDL 500
>gi|15810403|gb|AAL07089.1| putative nonsense-mediated mRNA decay protein [Arabidopsis
thaliana]
Length = 516
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEML 69
D + +Y EF+ DLEE+ R N+++Y+ + A++ + + AP + +EE+L
Sbjct: 439 DPEKTDKEYEEFLRDLEENPELRFNISLYR---DKDYQASETASMTDGEGAPSVPIEELL 495
Query: 70 DDLTI 74
DL +
Sbjct: 496 ADLDL 500
>gi|365760298|gb|EHN02028.1| Nmd3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401840617|gb|EJT43364.1| NMD3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 518
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDL- 72
A DY F+ +LEED RQ+VN+YK EDED DAP+I ++E+LD+L
Sbjct: 442 AEKDYELFLQELEEDAELRQSVNLYKNRVADAPTEEHEMDEDEDEDAPQINIDELLDELD 501
Query: 73 --TIDD 76
T+DD
Sbjct: 502 VMTLDD 507
>gi|256273979|gb|EEU08897.1| Nmd3p [Saccharomyces cerevisiae JAY291]
Length = 518
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDL 72
A DY F+ +LEED RQ+VN+YK +P EDED DAP+I ++E+LD+L
Sbjct: 442 AEKDYELFLQELEEDAELRQSVNLYKNCEANVP-PEEHEMDEDEDEDAPQINIDELLDEL 500
Query: 73 TIDDVDMEEEV 83
D++ +E+ V
Sbjct: 501 --DEMTLEDGV 509
>gi|147901478|ref|NP_001085853.1| 60S ribosomal export protein NMD3 [Xenopus laevis]
gi|82184282|sp|Q6GNS3.1|NMD3_XENLA RecName: Full=60S ribosomal export protein NMD3
gi|49115525|gb|AAH73430.1| MGC80914 protein [Xenopus laevis]
Length = 504
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 6/65 (9%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED L R+NVNI+K +PV++ +T++E APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDELLRKNVNIFK-NANVPVES---DTDEE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEE 82
EE
Sbjct: 493 ATGEE 497
>gi|412985300|emb|CCO20325.1| predicted protein [Bathycoccus prasinos]
Length = 565
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 17/89 (19%)
Query: 3 DATNIVPDTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDA-- 60
+ TN D D FM +LEED R +N+YK E D + + +++ A
Sbjct: 464 EETNKKDDAEKRMQDEELFMQELEEDFEGRAQINVYKKKNE---DLDAVIRANQNALANE 520
Query: 61 ------------PRITLEEMLDDLTIDDV 77
P I LEE+LDD+ + DV
Sbjct: 521 TDDEDDDENDEIPEIKLEELLDDMKLSDV 549
>gi|302686036|ref|XP_003032698.1| hypothetical protein SCHCODRAFT_107995 [Schizophyllum commune H4-8]
gi|300106392|gb|EFI97795.1| hypothetical protein SCHCODRAFT_107995, partial [Schizophyllum
commune H4-8]
Length = 506
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 7/65 (10%)
Query: 10 DTASANNDYNE-FMNDLEE--DVL---YRQNVNIYKAGPEIPVDANDINTEDEDPDAPRI 63
DT D +E F+ DLE D+L RQN+++Y+A P IP+++ + +DE P +P
Sbjct: 308 DTTEREEDDDEIFVTDLESALDLLDHNLRQNIHLYEAHPTIPIES-EATPDDEQPRSPSA 366
Query: 64 TLEEM 68
L+ +
Sbjct: 367 GLQAL 371
>gi|396464988|ref|XP_003837102.1| similar to nonsense-mediated mRNA decay protein 3 [Leptosphaeria
maculans JN3]
gi|312213660|emb|CBX93662.1| similar to nonsense-mediated mRNA decay protein 3 [Leptosphaeria
maculans JN3]
Length = 516
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIP-----VDANDINT---EDEDPDAP 61
D A D+ F+ D+EED R + +YKA E VDA D + +DED D
Sbjct: 439 DQARMEKDFEMFLQDVEEDEELRATMALYKAQQEQKQRERDVDAMDTESTMGDDEDDDGL 498
Query: 62 RITLEEMLDDLTIDDVDMEE 81
I +E++LDD +D+ M+E
Sbjct: 499 AIPMEQLLDDF--EDMRMQE 516
>gi|119482227|ref|XP_001261142.1| 60S ribosomal export protein NMD3 [Neosartorya fischeri NRRL 181]
gi|119409296|gb|EAW19245.1| nonsense-mediated mRNA decay protein 3 [Neosartorya fischeri NRRL
181]
Length = 532
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 17 DYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDIN---------TEDEDPDAPRITLEE 67
D+ F+ D+EED R + +YK P D + ++ D +AP+I++EE
Sbjct: 459 DFEMFLRDVEEDQELRSTLQLYKNKNARPNDRMQVEGGAGGMDMDEDESDDEAPKISMEE 518
Query: 68 MLDDLTIDDVDMEE 81
+LDD +VD EE
Sbjct: 519 LLDDFDELNVDDEE 532
>gi|19113989|ref|NP_593077.1| export adaptor Nmd3 (predicted) [Schizosaccharomyces pombe 972h-]
gi|1175492|sp|Q09817.1|NMD3_SCHPO RecName: Full=60S ribosomal export protein nmd3
gi|1019815|emb|CAA91191.1| export adaptor Nmd3 (predicted) [Schizosaccharomyces pombe]
Length = 498
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 10/63 (15%)
Query: 16 NDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDA------PRITLEEML 69
DY F+ +LEED RQ VN+YKA PV A + D D + P+I+++E+L
Sbjct: 435 RDYELFLQNLEEDPELRQGVNLYKA----PVKAIAVADTDMDEEDEVDEDIPQISVDELL 490
Query: 70 DDL 72
DD+
Sbjct: 491 DDV 493
>gi|393909661|gb|EFO25985.2| NMD3 family protein [Loa loa]
Length = 500
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 8 VPDTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEE 67
V D++ N++ +F+ DLEED +Q VN Y+ + + N E P P L E
Sbjct: 430 VCDSSFMENEFEDFLEDLEEDEQMKQKVNFYRNSAKQQTVCSK-NIALELPLGP--PLHE 486
Query: 68 MLDDLTID-DVDM 79
M+D+L ++ DV+M
Sbjct: 487 MMDNLDLNTDVEM 499
>gi|349806117|gb|AEQ18531.1| putative 60s ribosomal export protein nmd3 [Hymenochirus curtipes]
Length = 163
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 41/57 (71%), Gaps = 6/57 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
Y +F+ DLEED L R+N+NIY+ +PV++ +T++E APRI+L EML+DL I
Sbjct: 98 YQDFLEDLEEDELLRKNINIYR-NANVPVES---DTDEE--GAPRISLAEMLEDLHI 148
>gi|312070305|ref|XP_003138085.1| NMD3 family protein [Loa loa]
Length = 511
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 8 VPDTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEE 67
V D++ N++ +F+ DLEED +Q VN Y+ + + N E P P L E
Sbjct: 441 VCDSSFMENEFEDFLEDLEEDEQMKQKVNFYRNSAKQQTVCSK-NIALELPLGP--PLHE 497
Query: 68 MLDDLTID-DVDM 79
M+D+L ++ DV+M
Sbjct: 498 MMDNLDLNTDVEM 510
>gi|151944116|gb|EDN62409.1| conserved protein [Saccharomyces cerevisiae YJM789]
Length = 518
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLT 73
A DY F+ +LEED RQ+VN+YK EDED DAP+I ++E+LD+L
Sbjct: 442 AEKDYELFLQELEEDAELRQSVNLYKNREANVPPEEHEMDEDEDEDAPQINIDELLDEL- 500
Query: 74 IDDVDMEEEV 83
D++ +E+ V
Sbjct: 501 -DEMTLEDGV 509
>gi|365765264|gb|EHN06776.1| Nmd3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 534
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLT 73
A DY F+ +LEED RQ+VN+YK EDED DAP+I ++E+LD+L
Sbjct: 442 AEKDYELFLQELEEDAELRQSVNLYKNREANVPPEEHEMDEDEDEDAPQINIDELLDEL- 500
Query: 74 IDDVDMEEEV 83
D++ +E+ V
Sbjct: 501 -DEMTLEDGV 509
>gi|323308785|gb|EGA62023.1| Nmd3p [Saccharomyces cerevisiae FostersO]
Length = 518
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLT 73
A DY F+ +LEED RQ+VN+YK EDED DAP+I ++E+LD+L
Sbjct: 442 AEKDYELFLQELEEDAELRQSVNLYKNREANVPPEEHEMDEDEDEDAPQINIDELLDEL- 500
Query: 74 IDDVDMEEEV 83
D++ +E+ V
Sbjct: 501 -DEMTLEDGV 509
>gi|294660124|ref|XP_462561.2| 60S ribosomal export protein NMD3 [Debaryomyces hansenii CBS767]
gi|199434479|emb|CAG91072.2| DEHA2G23496p [Debaryomyces hansenii CBS767]
Length = 517
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDA-NDINTEDEDPDAPRITLEEM--- 68
A DY F+ LEED RQ +N+YK A + P + D+ ED+D DAP+I ++E+
Sbjct: 445 AERDYELFLQQLEEDDELRQTINLYKTADDQYPKHSETDMEDEDDDEDAPQIGIDELLDE 504
Query: 69 LDDLTIDDVDME 80
LDD+T+DD M+
Sbjct: 505 LDDMTLDDHTMQ 516
>gi|6321964|ref|NP_012040.1| Nmd3p [Saccharomyces cerevisiae S288c]
gi|308153577|sp|P38861.3|NMD3_YEAST RecName: Full=60S ribosomal export protein NMD3; AltName:
Full=Nonsense-mediated mRNA decay protein 3
gi|458900|gb|AAB68015.1| Nmd3p: Putative Upf1p interacting protein [Saccharomyces
cerevisiae]
gi|190405947|gb|EDV09214.1| factor required for a late assembly step of the 60S subunit
[Saccharomyces cerevisiae RM11-1a]
gi|207344532|gb|EDZ71647.1| YHR170Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146928|emb|CAY80184.1| Nmd3p [Saccharomyces cerevisiae EC1118]
gi|285810076|tpg|DAA06863.1| TPA: Nmd3p [Saccharomyces cerevisiae S288c]
gi|323348322|gb|EGA82571.1| Nmd3p [Saccharomyces cerevisiae Lalvin QA23]
gi|349578722|dbj|GAA23887.1| K7_Nmd3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392298982|gb|EIW10077.1| Nmd3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 518
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLT 73
A DY F+ +LEED RQ+VN+YK EDED DAP+I ++E+LD+L
Sbjct: 442 AEKDYELFLQELEEDAELRQSVNLYKNREANVPPEEHEMDEDEDEDAPQINIDELLDEL- 500
Query: 74 IDDVDMEEEV 83
D++ +E+ V
Sbjct: 501 -DEMTLEDGV 509
>gi|146414748|ref|XP_001483344.1| histone acetyltransferase GCN5 [Meyerozyma guilliermondii ATCC
6260]
Length = 658
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 1 MTDATNIV-PDTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPD 59
M DAT + A DY F+ +LEED RQ VN+YKA P A + D+D +
Sbjct: 584 MDDATRQARQEQEKAERDYELFLQELEEDEELRQTVNMYKA----PTQAQFESDMDDDDE 639
Query: 60 APRITLEEMLDDL 72
AP + L+E+LD++
Sbjct: 640 APEVGLDELLDEM 652
>gi|950224|gb|AAA74491.1| Nmd3p [Saccharomyces cerevisiae]
Length = 518
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLT 73
A DY F+ +LEED RQ+VN+YK EDED DAP+I ++E+LD+L
Sbjct: 442 AEKDYELFLQELEEDAELRQSVNLYKNREANVPPEEHEMDEDEDEDAPQINIDELLDEL- 500
Query: 74 IDDVDMEEEV 83
D++ +E+ V
Sbjct: 501 -DEMTLEDGV 509
>gi|389628958|ref|XP_003712132.1| nonsense-mediated mRNA decay protein 3 [Magnaporthe oryzae 70-15]
gi|351644464|gb|EHA52325.1| nonsense-mediated mRNA decay protein 3 [Magnaporthe oryzae 70-15]
gi|440473912|gb|ELQ42684.1| nonsense-mediated mRNA decay protein 3 [Magnaporthe oryzae Y34]
gi|440484141|gb|ELQ64279.1| nonsense-mediated mRNA decay protein 3 [Magnaporthe oryzae P131]
Length = 525
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 8/64 (12%)
Query: 17 DYNEFMNDLEEDVLYRQNVNIYKAGPE--------IPVDANDINTEDEDPDAPRITLEEM 68
+Y +F+ D+EED R + +YK + + V ++ +DED +AP+++++E+
Sbjct: 454 EYEQFLRDVEEDEELRATLALYKNTKKTKKPDADAMSVAETEMTYDDEDDNAPKVSMDEL 513
Query: 69 LDDL 72
LDD+
Sbjct: 514 LDDM 517
>gi|154276128|ref|XP_001538909.1| 60S ribosomal export protein NMD3 [Ajellomyces capsulatus NAm1]
gi|150413982|gb|EDN09347.1| nonsense-mediated mRNA decay protein 3 [Ajellomyces capsulatus
NAm1]
Length = 519
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Query: 17 DYNEFMNDLEEDVLYRQNVNIYKAG---------PEIPVDANDINTEDE---DPDAPRIT 64
D+ F+ D+EED R +YKA +I DA + +DE + D P+I+
Sbjct: 445 DFEMFLRDVEEDAELRSTFALYKAKRAKADTGRMEDIDHDAMSVVEDDEHGSEDDIPKIS 504
Query: 65 LEEMLDDL 72
++E+LDD
Sbjct: 505 MDELLDDF 512
>gi|190347658|gb|EDK39975.2| histone acetyltransferase GCN5 [Meyerozyma guilliermondii ATCC
6260]
Length = 658
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 1 MTDATNIV-PDTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPD 59
M DAT + A DY F+ +LEED RQ VN+YKA P A + D+D +
Sbjct: 584 MDDATRQARQEQEKAERDYELFLQELEEDEELRQTVNMYKA----PTQAQFESDMDDDDE 639
Query: 60 APRITLEEMLDDL 72
AP + L+E+LD++
Sbjct: 640 APEVGLDELLDEM 652
>gi|50555484|ref|XP_505150.1| 60S ribosomal export protein NMD3 [Yarrowia lipolytica CLIB122]
gi|49651020|emb|CAG77957.1| YALI0F08151p [Yarrowia lipolytica CLIB122]
Length = 505
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 13 SANNDYNEFMNDLEEDVLYRQNVNIYKAG----PEIPVDANDINTEDEDPDA-PRITLEE 67
A DY +F+ +LEED R VN+YK P +P +++ +E+ + P I ++E
Sbjct: 432 KAEQDYEQFLQELEEDTELRGTVNLYKRTVPQMPALPKTGDEMEASEEEGEGVPEIGVDE 491
Query: 68 MLDDL 72
+LDDL
Sbjct: 492 LLDDL 496
>gi|336471426|gb|EGO59587.1| hypothetical protein NEUTE1DRAFT_61157 [Neurospora tetrasperma FGSC
2508]
gi|350292520|gb|EGZ73715.1| NMD3-domain-containing protein [Neurospora tetrasperma FGSC 2509]
Length = 519
Score = 35.4 bits (80), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDED------PDAPRI 63
D A + +Y F+ D+EED R + +YK + +A+ ++ D D D P+I
Sbjct: 442 DQAKMDAEYEMFLRDVEEDEELRAALALYKNSLKTKREADAMSIADTDMMTEAEEDGPKI 501
Query: 64 TLEEMLDDL 72
+++E+LDD
Sbjct: 502 SMDELLDDF 510
>gi|85105436|ref|XP_961964.1| 60S ribosomal export protein NMD3 [Neurospora crassa OR74A]
gi|28923552|gb|EAA32728.1| hypothetical protein NCU08663 [Neurospora crassa OR74A]
Length = 519
Score = 35.4 bits (80), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDED------PDAPRI 63
D A + +Y F+ D+EED R + +YK + +A+ ++ D D D P+I
Sbjct: 442 DQAKMDAEYEMFLRDVEEDEELRAALALYKNSLKTKREADAMSIADTDMMTEAEEDGPKI 501
Query: 64 TLEEMLDDL 72
+++E+LDD
Sbjct: 502 SMDELLDDF 510
>gi|336265764|ref|XP_003347652.1| 60S ribosomal export protein NMD3 [Sordaria macrospora k-hell]
gi|380091186|emb|CCC11043.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 519
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDED------PDAPRI 63
D A + +Y F+ D+EED R + +YK + +A+ ++ D D D P+I
Sbjct: 442 DQAKMDAEYEMFLRDVEEDEELRAALALYKNSLKTKREADAMSIADTDMMTEAEEDGPKI 501
Query: 64 TLEEMLDDL 72
+++E+LDD
Sbjct: 502 SMDELLDDF 510
>gi|169621570|ref|XP_001804195.1| hypothetical protein SNOG_13995 [Phaeosphaeria nodorum SN15]
gi|111057500|gb|EAT78620.1| hypothetical protein SNOG_13995 [Phaeosphaeria nodorum SN15]
Length = 512
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 16 NDYNEFMNDLEEDVLYRQNVNIYKAGPEIP-VDANDINTEDE----DPDAPRITLEEMLD 70
D+ F+ D+EEDV RQ + +YKA E +A + TE E D I +E++LD
Sbjct: 444 RDFEMFLQDVEEDVDLRQGMALYKAQQEAKQREAEAMETESEIDDDDDQGITIPMEQLLD 503
Query: 71 DLTIDDVDME 80
D D++ ME
Sbjct: 504 DF--DEMTME 511
>gi|440639899|gb|ELR09818.1| nonsense-mediated mRNA decay protein 3 [Geomyces destructans
20631-21]
Length = 521
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 16 NDYNEFMNDLEEDVLYRQNVNIYKA-GPEIPVDANDI--NTEDEDPDAPRITLEEML--- 69
DY F+ D+EED RQ + +YKA + VDA + ++ E+ + P+I ++E+L
Sbjct: 451 KDYEMFLRDVEEDTELRQTLALYKAQQAQKEVDAMSMTETSDGEEDNTPQIDMDELLDEF 510
Query: 70 DDLTIDD 76
DDL ++D
Sbjct: 511 DDLKVND 517
>gi|367046288|ref|XP_003653524.1| 60S ribosomal export protein NMD3 [Thielavia terrestris NRRL 8126]
gi|347000786|gb|AEO67188.1| hypothetical protein THITE_2116024 [Thielavia terrestris NRRL 8126]
Length = 522
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDIN---TEDEDPDAPRITL 65
D A +Y F+ D+EED R + +YK + P DA+ ++ TE + D P+I +
Sbjct: 445 DQARMEAEYEMFLRDVEEDEELRAALALYKNTKKKKPQDADAMSIAETEMTEDDGPKINM 504
Query: 66 EEMLDDLTIDDVDME 80
+E+LDD D++D++
Sbjct: 505 DELLDDF--DELDIQ 517
>gi|156059292|ref|XP_001595569.1| 60S ribosomal export protein NMD3 [Sclerotinia sclerotiorum 1980
UF-70]
gi|154701445|gb|EDO01184.1| hypothetical protein SS1G_03658 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 521
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 16 NDYNEFMNDLEEDVLYRQNVNIYKA-GPEIPVDANDI-NTEDEDPDAPRITLEEMLDDLT 73
DY F+ D+EED RQ + +YKA + DA + T D + + P+I + E+LD+
Sbjct: 454 RDYEMFLQDVEEDPELRQTLALYKAQQAQKEADAMSVAETSDGEDETPKIDMNELLDEF- 512
Query: 74 IDDVDME 80
D+++M+
Sbjct: 513 -DELNMQ 518
>gi|398392165|ref|XP_003849542.1| hypothetical protein MYCGRDRAFT_75941 [Zymoseptoria tritici IPO323]
gi|339469419|gb|EGP84518.1| hypothetical protein MYCGRDRAFT_75941 [Zymoseptoria tritici IPO323]
Length = 519
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 17 DYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDA-NDINTEDEDPDAPRITLEEMLDDLTID 75
DY +F+ DLE D R +N+YK E+ DA +++ T+D + D I +++++D++ +
Sbjct: 453 DYEQFLQDLEADPELRAGMNMYKQQREL--DAISEMETDDGEDDGLEIPMDQLIDEM--E 508
Query: 76 DVDMEE 81
D+ MEE
Sbjct: 509 DMGMEE 514
>gi|428177639|gb|EKX46518.1| hypothetical protein GUITHDRAFT_94322, partial [Guillardia theta
CCMP2712]
Length = 460
Score = 34.7 bits (78), Expect = 7.8, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEE 67
A DY EF+ D+E D RQ VN+YK + + T+D + P T EE
Sbjct: 413 AEQDYEEFLQDVETDAEVRQRVNVYKDPSKFRI------TDDGKIEMPTNTNEE 460
>gi|406603759|emb|CCH44784.1| 60S ribosomal export protein [Wickerhamomyces ciferrii]
Length = 512
Score = 34.7 bits (78), Expect = 7.8, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 20/80 (25%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDP-----------DAPR 62
A DY F+ +LEED RQ +N+YK D N + ++ DAP
Sbjct: 441 AEKDYEVFLQELEEDQEMRQAINLYK-------DTNLTERQQQEAAGDEMDEDEDEDAPG 493
Query: 63 ITLEEMLDDLTIDDVDMEEE 82
+ ++E+LD+L DD+ +E++
Sbjct: 494 VDIDELLDEL--DDMTLEDQ 511
>gi|61805990|ref|YP_214350.1| hypothetical protein PSSM2_118 [Prochlorococcus phage P-SSM2]
gi|61374499|gb|AAX44496.1| hypothetical protein PSSM2_118 [Prochlorococcus phage P-SSM2]
gi|265525200|gb|ACY75997.1| conserved hypothetical protein [Prochlorococcus phage P-SSM2]
Length = 527
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 8 VPDTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEE 67
VPD ++A+N + L+ +Y Q + Y A + D N + T +P AP +T ++
Sbjct: 371 VPDASTASNTVSGTRGFLDIKGIYYQTAD-YNANGAVYFDENGLQTSTNNPAAPILTSKQ 429
Query: 68 MLDDLTIDDVDMEEEVT 84
+L +T + + + VT
Sbjct: 430 ILTAVTKNTLALPSNVT 446
>gi|212724002|ref|NP_001132875.1| uncharacterized protein LOC100194368 [Zea mays]
gi|195612302|gb|ACG27981.1| nonsense-mediated mRNA decay protein 3 [Zea mays]
Length = 525
Score = 34.7 bits (78), Expect = 8.5, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 16 NDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTID 75
++Y F+ DLE D R VN+YK A+ + D P +++EE+++DLT+
Sbjct: 450 DEYEAFLRDLELDPGMRFGVNLYKNEDYRSEMASTVGD-----DIPTVSIEELIEDLTLG 504
Query: 76 DVDMEE 81
D + +E
Sbjct: 505 DNEDDE 510
>gi|169775831|ref|XP_001822382.1| 60S ribosomal export protein NMD3 [Aspergillus oryzae RIB40]
gi|83771117|dbj|BAE61249.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391871083|gb|EIT80249.1| NMD protein affecting ribosome stability and mRNA decay
[Aspergillus oryzae 3.042]
Length = 520
Score = 34.3 bits (77), Expect = 8.7, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 17 DYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 76
D+ F+ D+EED R + +YKA +++ + +D D P+I ++E+LDD D+
Sbjct: 456 DFEMFLRDVEEDQELRGTIELYKARKNQNAGGMEMDEDSDDEDVPKINMDELLDDF--DE 513
Query: 77 VDMEEE 82
++M ++
Sbjct: 514 LNMNDD 519
>gi|71002662|ref|XP_756012.1| nonsense-mediated mRNA decay protein 3 [Aspergillus fumigatus
Af293]
gi|66853650|gb|EAL93974.1| nonsense-mediated mRNA decay protein 3 [Aspergillus fumigatus
Af293]
Length = 532
Score = 34.3 bits (77), Expect = 9.1, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 11/75 (14%)
Query: 17 DYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDIN---------TEDEDPDAPRITLEE 67
D+ F+ D+EED R + +YK P + + ++ D DAP+I++EE
Sbjct: 459 DFEMFLRDVEEDQELRSTLQLYKNKNARPNNRMQVEGGAGGMEMDEDESDDDAPKISMEE 518
Query: 68 MLDDLTIDDVDMEEE 82
+LDD D+++M++E
Sbjct: 519 LLDDF--DELNMDDE 531
>gi|254568344|ref|XP_002491282.1| 60S ribosomal export protein NMD3 [Komagataella pastoris GS115]
gi|238031079|emb|CAY69002.1| Protein involved in nuclear export of the large ribosomal subunit
[Komagataella pastoris GS115]
gi|328352200|emb|CCA38599.1| 60S ribosomal export protein NMD3 [Komagataella pastoris CBS 7435]
Length = 506
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 13 SANNDYNEFMNDLEEDVLYRQNVNIYKA-GPEIPVDANDINTEDEDPDAPRITLEEMLDD 71
A DY F+ +LEED RQ VN+YKA P P + D++ +D+ P+ I ++E+LD+
Sbjct: 442 KAERDYEIFLQELEEDPELRQTVNLYKADEPPAPENEADMDEDDDAPE---IGVDELLDE 498
Query: 72 L 72
L
Sbjct: 499 L 499
>gi|170108838|ref|XP_001885627.1| 60S ribosomal export protein NMD3 [Laccaria bicolor S238N-H82]
gi|164639503|gb|EDR03774.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 558
Score = 34.3 bits (77), Expect = 9.6, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEI 44
D DY F+ DLEED RQ VN+YKA PE+
Sbjct: 445 DHKKVEEDYELFLRDLEEDPEMRQGVNLYKA-PEV 478
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.306 0.129 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,480,437,560
Number of Sequences: 23463169
Number of extensions: 60776893
Number of successful extensions: 122161
Number of sequences better than 100.0: 402
Number of HSP's better than 100.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 282
Number of HSP's that attempted gapping in prelim test: 121651
Number of HSP's gapped (non-prelim): 439
length of query: 87
length of database: 8,064,228,071
effective HSP length: 57
effective length of query: 30
effective length of database: 6,726,827,438
effective search space: 201804823140
effective search space used: 201804823140
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 69 (31.2 bits)