BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13019
(87 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96D46|NMD3_HUMAN 60S ribosomal export protein NMD3 OS=Homo sapiens GN=NMD3 PE=1 SV=1
Length = 503
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDSA-IPVES---DTDDE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEEVTS 85
EE S
Sbjct: 493 ATGEEGAS 500
>sp|Q5RC82|NMD3_PONAB 60S ribosomal export protein NMD3 OS=Pongo abelii GN=NMD3 PE=2 SV=1
Length = 503
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDSA-IPVES---DTDDE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEEVTS 85
EE S
Sbjct: 493 ATGEEGAS 500
>sp|Q99L48|NMD3_MOUSE 60S ribosomal export protein NMD3 OS=Mus musculus GN=Nmd3 PE=2 SV=1
Length = 503
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R++VNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKHVNIYRDA-TIPVES---DTDDE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEEVTS 85
EE S
Sbjct: 493 ATGEEGAS 500
>sp|Q08DS5|NMD3_BOVIN 60S ribosomal export protein NMD3 OS=Bos taurus GN=NMD3 PE=2 SV=1
Length = 503
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 6/57 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
Y +F+ DLEED R+NVNIY+ IPV++ +T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDS-TIPVES---DTDDE--GAPRISLAEMLEDLHI 489
>sp|Q6P2Z6|NMD3_XENTR 60S ribosomal export protein NMD3 OS=Xenopus tropicalis GN=nmd3
PE=2 SV=1
Length = 504
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 41/57 (71%), Gaps = 6/57 (10%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
Y +F+ DLEED + R+NVNIYK +PV++ +T++E APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEVIRKNVNIYK-NANLPVES---DTDEE--GAPRISLAEMLEDLHI 489
>sp|Q5BLF0|NMD3_DANRE 60S ribosomal export protein NMD3 OS=Danio rerio GN=nmd3 PE=2 SV=1
Length = 505
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 35/47 (74%), Gaps = 4/47 (8%)
Query: 30 LYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 76
+ R+N+NI++ +IPV+ + +T+D+ APRI+L EML+DL++ D
Sbjct: 451 MLRKNINIFRDASKIPVEES--DTDDD--GAPRISLAEMLEDLSLSD 493
>sp|Q6GNS3|NMD3_XENLA 60S ribosomal export protein NMD3 OS=Xenopus laevis GN=nmd3 PE=2
SV=1
Length = 504
Score = 36.6 bits (83), Expect = 0.050, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 6/65 (9%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED L R+NVNI+K +PV++ +T++E APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDELLRKNVNIFK-NANVPVES---DTDEE--GAPRISLAEMLEDLHISQD 492
Query: 78 DMEEE 82
EE
Sbjct: 493 ATGEE 497
>sp|Q09817|NMD3_SCHPO 60S ribosomal export protein nmd3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nmd3 PE=3 SV=1
Length = 498
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 10/63 (15%)
Query: 16 NDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDA------PRITLEEML 69
DY F+ +LEED RQ VN+YKA PV A + D D + P+I+++E+L
Sbjct: 435 RDYELFLQNLEEDPELRQGVNLYKA----PVKAIAVADTDMDEEDEVDEDIPQISVDELL 490
Query: 70 DDL 72
DD+
Sbjct: 491 DDV 493
>sp|P38861|NMD3_YEAST 60S ribosomal export protein NMD3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NMD3 PE=1 SV=3
Length = 518
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLT 73
A DY F+ +LEED RQ+VN+YK EDED DAP+I ++E+LD+L
Sbjct: 442 AEKDYELFLQELEEDAELRQSVNLYKNREANVPPEEHEMDEDEDEDAPQINIDELLDEL- 500
Query: 74 IDDVDMEEEV 83
D++ +E+ V
Sbjct: 501 -DEMTLEDGV 509
>sp|Q1WUF9|DPO3_LACS1 DNA polymerase III PolC-type OS=Lactobacillus salivarius (strain
UCC118) GN=polC PE=3 SV=1
Length = 1444
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 20 EFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDM 79
FMN +ED +YR+ + +AG AN +N + PDA T +EML++ + D+
Sbjct: 742 HFMN--KEDAIYRKILIHSQAG------ANPLNRLKKLPDAHFRTTDEMLEEFSFLGEDI 793
Query: 80 EEEVT 84
+E+
Sbjct: 794 AKEIV 798
>sp|B9IXC7|ARGB_BACCQ Acetylglutamate kinase OS=Bacillus cereus (strain Q1) GN=argB
PE=3 SV=1
Length = 255
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 22 MNDLEEDVLYR-----QNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLD 70
+NDL D + + + V ++ GPEI D N E D R+T +E++D
Sbjct: 17 LNDLFFDCIKKLQQKYKVVIVHGGGPEIDAQLKDCNINAEKRDGLRVTPKEVMD 70
>sp|B7HNP7|ARGB_BACC7 Acetylglutamate kinase OS=Bacillus cereus (strain AH187) GN=argB
PE=3 SV=1
Length = 255
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 22 MNDLEEDVLYR-----QNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLD 70
+NDL D + + + V ++ GPEI D N E D R+T +E++D
Sbjct: 17 LNDLFFDCIKKLQQKYKVVIVHGGGPEIDAQLKDCNINAEKRDGLRVTPKEVMD 70
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.129 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,917,399
Number of Sequences: 539616
Number of extensions: 1494801
Number of successful extensions: 2930
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 2895
Number of HSP's gapped (non-prelim): 53
length of query: 87
length of database: 191,569,459
effective HSP length: 57
effective length of query: 30
effective length of database: 160,811,347
effective search space: 4824340410
effective search space used: 4824340410
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 55 (25.8 bits)