Query psy13019
Match_columns 87
No_of_seqs 112 out of 189
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 17:17:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13019.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13019hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2613|consensus 99.7 2E-17 4.4E-22 134.2 5.8 74 7-85 424-500 (502)
2 PF07862 Nif11: Nitrogen fixat 85.0 1 2.3E-05 25.7 2.5 27 16-42 4-30 (49)
3 TIGR03798 ocin_TIGR03798 bacte 66.2 6.9 0.00015 23.6 2.5 25 17-41 3-27 (64)
4 PF02526 GBP_repeat: Glycophor 50.1 13 0.00028 21.1 1.6 20 20-39 8-27 (38)
5 cd08808 CARD_CARD11_CARMA1 Cas 26.5 72 0.0016 21.2 2.5 23 13-35 62-85 (86)
6 PF13767 DUF4168: Domain of un 22.7 84 0.0018 19.3 2.2 20 16-35 59-78 (78)
7 PF08880 QLQ: QLQ; InterPro: 22.3 39 0.00085 18.8 0.5 12 29-40 9-20 (37)
8 PF11225 DUF3024: Protein of u 21.4 37 0.0008 20.2 0.3 16 15-30 38-53 (57)
9 cd08809 CARD_CARD9 Caspase act 18.9 1.1E+02 0.0024 20.4 2.2 23 13-35 62-85 (86)
10 cd08806 CARD_CARD14_CARMA2 Cas 17.8 1.4E+02 0.0031 19.8 2.5 23 13-35 62-85 (86)
No 1
>KOG2613|consensus
Probab=99.69 E-value=2e-17 Score=134.24 Aligned_cols=74 Identities=32% Similarity=0.526 Sum_probs=58.6
Q ss_pred CCcchhhhhhHHHHHHHHhhhCHHHHHhcccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHhhccCCCCCC---Cccchh
Q psy13019 7 IVPDTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV---DMEEEV 83 (87)
Q Consensus 7 ~~~d~~~~e~DyE~FL~dLEED~ElR~~InLYK~~~~~~~~~~~~~~~~~d~d~P~I~LdELLDdl~i~dd---~~~e~~ 83 (87)
.+.+.++.+++|+.||++||||++||++|||||++.+.+. .+.++++++|+|+|+|||++|.+... +.++++
T Consensus 424 ~~~~~~~~~~eY~~FledlEEd~elr~~vnlyrd~~~~~~-----~d~d~~ed~p~i~ldElLedl~~~~~e~~~~~edd 498 (502)
T KOG2613|consen 424 GKNESERTEKEYELFLEDLEEDPELRQGVNLYRDKEKPTE-----SDTDDAEDAPQITLDELLEDLKLSFEEDDEDGEDD 498 (502)
T ss_pred ccccchhhHHHHHHHHHhhhcCHHHHhcceeeeccCCCCc-----cccccccCCCCCCHHHHHhhhhcchhhcccCCCcc
Confidence 3677888899999999999999999999999999987322 12233488999999999999977654 444554
Q ss_pred hc
Q psy13019 84 TS 85 (87)
Q Consensus 84 ~~ 85 (87)
++
T Consensus 499 ~~ 500 (502)
T KOG2613|consen 499 EA 500 (502)
T ss_pred cc
Confidence 44
No 2
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=85.02 E-value=1 Score=25.70 Aligned_cols=27 Identities=11% Similarity=0.300 Sum_probs=23.0
Q ss_pred hHHHHHHHHhhhCHHHHHhcccccCCC
Q psy13019 16 NDYNEFMNDLEEDVLYRQNVNIYKAGP 42 (87)
Q Consensus 16 ~DyE~FL~dLEED~ElR~~InLYK~~~ 42 (87)
.....||..+..||.||.+++-.+++.
T Consensus 4 ~~l~~Fl~~~~~d~~l~~~l~~~~~~~ 30 (49)
T PF07862_consen 4 ESLKAFLEKVKSDPELREQLKACQNPE 30 (49)
T ss_pred HHHHHHHHHHhcCHHHHHHHHhcCCHH
Confidence 467899999999999999998766543
No 3
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=66.21 E-value=6.9 Score=23.58 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=21.0
Q ss_pred HHHHHHHHhhhCHHHHHhcccccCC
Q psy13019 17 DYNEFMNDLEEDVLYRQNVNIYKAG 41 (87)
Q Consensus 17 DyE~FL~dLEED~ElR~~InLYK~~ 41 (87)
....|+..+..||.||.+|.=..++
T Consensus 3 ~l~~Fl~~~~~d~~L~~~l~~~~~~ 27 (64)
T TIGR03798 3 QLKAFLEKVKTDPDLREKLKAAEDP 27 (64)
T ss_pred HHHHHHHHHHcCHHHHHHHHHcCCH
Confidence 4678999999999999999865543
No 4
>PF02526 GBP_repeat: Glycophorin-binding protein; InterPro: IPR003681 The glycophorin-binding protein contains a tandem repeat. The repeated sequence determines the binding domain for an erythrocyte receptor binding protein of Plasmodium falciparum, the malarial parasite []. Erythrocyte invasion by the malarial merozoite is a receptor-mediated process, an obligatory step in the development of the parasite. The P. falciparum protein binds to the erythrocyte receptor glycophorin.
Probab=50.11 E-value=13 Score=21.11 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=15.9
Q ss_pred HHHHHhhhCHHHHHhccccc
Q psy13019 20 EFMNDLEEDVLYRQNVNIYK 39 (87)
Q Consensus 20 ~FL~dLEED~ElR~~InLYK 39 (87)
+.++..--||++|+.+|++-
T Consensus 8 qimk~yaadpeyrkh~~v~y 27 (38)
T PF02526_consen 8 QIMKAYAADPEYRKHLNVLY 27 (38)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 35666778999999999763
No 5
>cd08808 CARD_CARD11_CARMA1 Caspase activation and recruitment domain of CARD11-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD11, also known as caspase recruitment domain-containing membrane-associated guanylate kinase protein 1 (CARMA1). CARMA1, together with BCL10 (B-cell lymphoma 10) and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), form the L-CBM signalosome (CBM complex in lymphoid immune cells) which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. CARMA1 associates with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by as
Probab=26.55 E-value=72 Score=21.20 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=19.7
Q ss_pred hhhhHHHHHHHHhh-hCHHHHHhc
Q psy13019 13 SANNDYNEFMNDLE-EDVLYRQNV 35 (87)
Q Consensus 13 ~~e~DyE~FL~dLE-ED~ElR~~I 35 (87)
|..+=|..||+-|| .-|.++..|
T Consensus 62 rG~~af~aFLeSLe~~yP~l~~~~ 85 (86)
T cd08808 62 KGQRGYVVFLESLEFYYPELYKLV 85 (86)
T ss_pred cCchHHHHHHHHHHhhCHHHHHhc
Confidence 44577999999999 899999876
No 6
>PF13767 DUF4168: Domain of unknown function (DUF4168)
Probab=22.68 E-value=84 Score=19.34 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=17.6
Q ss_pred hHHHHHHHHhhhCHHHHHhc
Q psy13019 16 NDYNEFMNDLEEDVLYRQNV 35 (87)
Q Consensus 16 ~DyE~FL~dLEED~ElR~~I 35 (87)
..|..-+.-+..||.||+.|
T Consensus 59 ~~fN~I~~~~q~Dp~L~~rI 78 (78)
T PF13767_consen 59 ERFNEITQAAQSDPELRQRI 78 (78)
T ss_pred HHHHHHHHHHHcCHHHHhcC
Confidence 56888899999999999876
No 7
>PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif. QLQ is found at the N terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions []. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.28 E-value=39 Score=18.81 Aligned_cols=12 Identities=25% Similarity=0.252 Sum_probs=10.2
Q ss_pred HHHHHhcccccC
Q psy13019 29 VLYRQNVNIYKA 40 (87)
Q Consensus 29 ~ElR~~InLYK~ 40 (87)
.+||++|.+||-
T Consensus 9 ~~L~~Qi~ayK~ 20 (37)
T PF08880_consen 9 QELRAQILAYKY 20 (37)
T ss_pred HHHHHHHHHHHH
Confidence 479999999993
No 8
>PF11225 DUF3024: Protein of unknown function (DUF3024); InterPro: IPR021388 This entry is represented by Bacteriophage 933W, L0084. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.39 E-value=37 Score=20.17 Aligned_cols=16 Identities=19% Similarity=0.476 Sum_probs=13.6
Q ss_pred hhHHHHHHHHhhhCHH
Q psy13019 15 NNDYNEFMNDLEEDVL 30 (87)
Q Consensus 15 e~DyE~FL~dLEED~E 30 (87)
.++.+.||+.|+.||.
T Consensus 38 ~~~L~~~l~~i~~Dp~ 53 (57)
T PF11225_consen 38 SKDLEALLREIEKDPE 53 (57)
T ss_pred CCCHHHHHHHHhhCCc
Confidence 4678999999999984
No 9
>cd08809 CARD_CARD9 Caspase activation and recruitment domain of CARD9-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD9. CARD9 is a central regulator of innate immunity and is highly expressed in dendritic cells and macrophages. Together with BCL10 (B-cell lymphoma 10) and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), it forms the M-CBM signalosome (the CBM complex in myeloid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. CARD9 associates with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating wi
Probab=18.86 E-value=1.1e+02 Score=20.36 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=19.1
Q ss_pred hhhhHHHHHHHHhh-hCHHHHHhc
Q psy13019 13 SANNDYNEFMNDLE-EDVLYRQNV 35 (87)
Q Consensus 13 ~~e~DyE~FL~dLE-ED~ElR~~I 35 (87)
+.-+=|..||+-|| .=|.++.+|
T Consensus 62 rG~~~f~aFLeSLE~~yP~l~~~~ 85 (86)
T cd08809 62 TGLKGYEAFLESLELYYPQLYKKI 85 (86)
T ss_pred cCchHHHHHHHHHHHHHHHHHhhc
Confidence 34477999999999 889998876
No 10
>cd08806 CARD_CARD14_CARMA2 Caspase activation and recruitment domain of CARD14-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD14, also known as BIMP2 or CARMA2 (caspase recruitment domain-containing membrane-associated guanylate kinase protein 2). CARD14 has been identified as a novel member of the MAGUK (membrane-associated guanylate kinase) family that functions as upstream activators of BCL10 (B-cell lymphoma 10) and NF-kB signaling. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways
Probab=17.76 E-value=1.4e+02 Score=19.76 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=19.3
Q ss_pred hhhhHHHHHHHHhh-hCHHHHHhc
Q psy13019 13 SANNDYNEFMNDLE-EDVLYRQNV 35 (87)
Q Consensus 13 ~~e~DyE~FL~dLE-ED~ElR~~I 35 (87)
+..+=|..||+-|| .-|.++..|
T Consensus 62 rG~~g~~aFLeSLe~~yP~ly~~i 85 (86)
T cd08806 62 RGKNGAIAFLESLKFHNPDVYTLV 85 (86)
T ss_pred cCchHHHHHHHHHHHHCHHHHHhc
Confidence 34567999999999 899998876
Done!