Query psy13019
Match_columns 87
No_of_seqs 112 out of 189
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 17:17:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13019.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13019hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rso_B MLIN-2/CASK, peripheral 35.5 19 0.00065 20.6 1.7 20 20-39 31-50 (56)
2 2hfr_A Fowlicidin-3, cathelici 25.1 20 0.00067 18.2 0.4 9 32-40 15-23 (27)
3 2dii_A TFIIH basal transcripti 23.2 39 0.0014 20.2 1.6 25 13-40 11-35 (61)
4 1j2m_A CPI-17, 17-kDa PKC-pote 14.5 65 0.0022 21.0 1.2 9 62-70 53-61 (99)
5 2iay_A Hypothetical protein; s 11.2 45 0.0015 22.2 -0.3 11 33-43 81-91 (114)
6 3oiq_B DNA polymerase alpha ca 11.0 1.4E+02 0.0046 16.1 1.6 17 13-29 11-27 (36)
7 1use_A VAsp, vasodilator-stimu 10.7 1.9E+02 0.0065 16.2 2.3 22 16-39 7-28 (45)
8 4a9a_C Translation machinery-a 10.3 1.2E+02 0.0042 20.7 1.6 15 57-71 11-25 (142)
9 1jmu_A Protein MU-1; protein-p 9.1 88 0.003 17.4 0.4 28 32-65 7-35 (41)
10 1g8i_A Frequenin, neuronal cal 9.0 2.4E+02 0.0084 17.2 2.6 23 17-39 165-187 (190)
No 1
>1rso_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity; NMR {Rattus norvegicus} SCOP: a.194.1.1
Probab=35.51 E-value=19 Score=20.59 Aligned_cols=20 Identities=15% Similarity=0.464 Sum_probs=18.6
Q ss_pred HHHHHhhhCHHHHHhccccc
Q psy13019 20 EFMNDLEEDVLYRQNVNIYK 39 (87)
Q Consensus 20 ~FL~dLEED~ElR~~InLYK 39 (87)
.||+.+-++|.|++=++||.
T Consensus 31 ~fL~~ll~~~~L~~Llkvhd 50 (56)
T 1rso_B 31 DFLHSVFQDQHLHTLLDLYD 50 (56)
T ss_dssp HHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHH
Confidence 79999999999999999985
No 2
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=25.13 E-value=20 Score=18.24 Aligned_cols=9 Identities=44% Similarity=0.840 Sum_probs=7.2
Q ss_pred HHhcccccC
Q psy13019 32 RQNVNIYKA 40 (87)
Q Consensus 32 R~~InLYK~ 40 (87)
.+.|||||.
T Consensus 15 aaginlyka 23 (27)
T 2hfr_A 15 AAGINLYKA 23 (27)
T ss_dssp HHHHTSTTT
T ss_pred ehhhhHHHH
Confidence 467999986
No 3
>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=23.22 E-value=39 Score=20.16 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHhhhCHHHHHhcccccC
Q psy13019 13 SANNDYNEFMNDLEEDVLYRQNVNIYKA 40 (87)
Q Consensus 13 ~~e~DyE~FL~dLEED~ElR~~InLYK~ 40 (87)
++..+.++..+=|.+||+|+ .|||.
T Consensus 11 k~n~ELe~k~rlL~eN~~L~---qLyk~ 35 (61)
T 2dii_A 11 KANKELEEKNRMLQEDPVLF---QLYKD 35 (61)
T ss_dssp CSCHHHHHHHHHHHHCHHHH---HHHHH
T ss_pred hccHhHHHHHHHHHhCHHHH---HHHHH
Confidence 44589999999999999999 67874
No 4
>1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix bundle, protein binding; NMR {Sus scrofa} SCOP: a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A
Probab=14.45 E-value=65 Score=20.95 Aligned_cols=9 Identities=22% Similarity=0.837 Sum_probs=8.1
Q ss_pred CCCHHHhhc
Q psy13019 62 RITLEEMLD 70 (87)
Q Consensus 62 ~I~LdELLD 70 (87)
.|.|++|||
T Consensus 53 eIDiDeLLD 61 (99)
T 1j2m_A 53 EVNIDELLE 61 (99)
T ss_dssp SCCSHHHHC
T ss_pred ccCHHHHhc
Confidence 799999997
No 5
>2iay_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, translation; HET: MSE; 1.20A {Lactobacillus plantarum} SCOP: d.376.1.1
Probab=11.20 E-value=45 Score=22.22 Aligned_cols=11 Identities=36% Similarity=0.598 Sum_probs=8.4
Q ss_pred HhcccccCCCC
Q psy13019 33 QNVNIYKAGPE 43 (87)
Q Consensus 33 ~~InLYK~~~~ 43 (87)
+.|||||++..
T Consensus 81 ~~VNIFK~~~~ 91 (114)
T 2iay_A 81 QRANIFKNDAH 91 (114)
T ss_dssp SBCCSCGGGCC
T ss_pred EEEecccCccc
Confidence 47999998753
No 6
>3oiq_B DNA polymerase alpha catalytic subunit A; OB fold, dimer, dimeric complex, protein binding; HET: DNA; 2.40A {Saccharomyces cerevisiae}
Probab=11.00 E-value=1.4e+02 Score=16.05 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=14.3
Q ss_pred hhhhHHHHHHHHhhhCH
Q psy13019 13 SANNDYNEFMNDLEEDV 29 (87)
Q Consensus 13 ~~e~DyE~FL~dLEED~ 29 (87)
|.++|.+..|+++|.-|
T Consensus 11 R~~nDvq~Ll~DVENSP 27 (36)
T 3oiq_B 11 RYANDVQDLLDDVENSP 27 (36)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHhhHHHHHHHhhcCc
Confidence 67889999999998755
No 7
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=10.66 E-value=1.9e+02 Score=16.21 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=16.9
Q ss_pred hHHHHHHHHhhhCHHHHHhccccc
Q psy13019 16 NDYNEFMNDLEEDVLYRQNVNIYK 39 (87)
Q Consensus 16 ~DyE~FL~dLEED~ElR~~InLYK 39 (87)
.|++.|-++|-+ |||+.|+=-|
T Consensus 7 ~dle~~KqEIL~--E~RkElqK~K 28 (45)
T 1use_A 7 SDLQRVKQELLE--EVKKELQKVK 28 (45)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHH
Confidence 588999999874 7888876444
No 8
>4a9a_C Translation machinery-associated protein 46; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=10.27 E-value=1.2e+02 Score=20.74 Aligned_cols=15 Identities=40% Similarity=0.687 Sum_probs=12.1
Q ss_pred CCCCCCCCHHHhhcc
Q psy13019 57 DPDAPRITLEEMLDD 71 (87)
Q Consensus 57 d~d~P~I~LdELLDd 71 (87)
.+..|.|+|+|+|..
T Consensus 11 ~e~~~~ItlEe~iE~ 25 (142)
T 4a9a_C 11 LEKQPKITLEEFIET 25 (142)
T ss_dssp CCSCCCCCHHHHHHT
T ss_pred HhcCCcCcHHHHHHH
Confidence 355799999999964
No 9
>1jmu_A Protein MU-1; protein-protein complex, jelly roll, zinc finger, viral protein; HET: BOG; 2.80A {Reovirus SP} SCOP: e.35.1.1
Probab=9.13 E-value=88 Score=17.35 Aligned_cols=28 Identities=21% Similarity=0.391 Sum_probs=15.4
Q ss_pred HHhcccccCCCC-CCCCCCCCCCCCCCCCCCCCCH
Q psy13019 32 RQNVNIYKAGPE-IPVDANDINTEDEDPDAPRITL 65 (87)
Q Consensus 32 R~~InLYK~~~~-~~~~~~~~~~~~~d~d~P~I~L 65 (87)
-+++|||-+.+. .|...+ --.-.|+|.|
T Consensus 7 vq~~nI~GdGN~F~p~a~~------~ssA~P~l~L 35 (41)
T 1jmu_A 7 VQTINVTGDGNVFKPSAET------SSTAVPSLSL 35 (41)
T ss_dssp --CBCTTSSSCEECCBGGG------CCCCBCCCCC
T ss_pred EEEEEEeCCCceeCccccc------ccccCcceec
Confidence 367888888776 443111 1244677765
No 10
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=8.95 E-value=2.4e+02 Score=17.23 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=19.8
Q ss_pred HHHHHHHHhhhCHHHHHhccccc
Q psy13019 17 DYNEFMNDLEEDVLYRQNVNIYK 39 (87)
Q Consensus 17 DyE~FL~dLEED~ElR~~InLYK 39 (87)
.|++|++=+...|.+++.+.+|-
T Consensus 165 ~~~ef~~~~~~~~~~~~~~~~~~ 187 (190)
T 1g8i_A 165 TLQEFQEGSKADPSIVQALSLYD 187 (190)
T ss_dssp EHHHHHHHHHHCHHHHHHHCCBT
T ss_pred eHHHHHHHHHhChHHHHHHhhhc
Confidence 48889999999999999988874
Done!