Your job contains 1 sequence.
>psy13019
MTDATNIVPDTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDA
PRITLEEMLDDLTIDDVDMEEEVTSDQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13019
(87 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
WB|WBGene00012030 - symbol:T25G3.3 species:6239 "Caenorha... 164 2.7e-11 1
CGD|CAL0001704 - symbol:NMD3 species:5476 "Candida albica... 155 2.6e-10 1
ZFIN|ZDB-GENE-050320-149 - symbol:nmd3 "NMD3 homolog (S. ... 150 8.5e-10 1
SGD|S000001213 - symbol:NMD3 "Protein involved in nuclear... 145 3.1e-09 1
UNIPROTKB|I3LDB7 - symbol:NMD3 "Uncharacterized protein" ... 140 1.0e-08 1
UNIPROTKB|C9JA08 - symbol:NMD3 "60S ribosomal export prot... 131 1.0e-07 1
UNIPROTKB|Q96D46 - symbol:NMD3 "60S ribosomal export prot... 129 1.6e-07 1
RGD|1308468 - symbol:Nmd3 "NMD3 homolog (S. cerevisiae)" ... 129 1.6e-07 1
UNIPROTKB|E1BTL9 - symbol:NMD3 "Uncharacterized protein" ... 129 1.6e-07 1
POMBASE|SPAC16C9.03 - symbol:nmd3 "export adaptor Nmd3 (p... 128 2.0e-07 1
UNIPROTKB|Q08DS5 - symbol:NMD3 "60S ribosomal export prot... 126 3.3e-07 1
FB|FBgn0023542 - symbol:Nmd3 "Nonsense-mediated mRNA 3" s... 126 3.4e-07 1
MGI|MGI:2140103 - symbol:Nmd3 "NMD3 homolog (S. cerevisia... 124 5.4e-07 1
ASPGD|ASPL0000044316 - symbol:AN1711 species:162425 "Emer... 108 2.9e-05 1
TAIR|locus:2044299 - symbol:NMD3 "AT2G03820" species:3702... 103 0.00010 1
UNIPROTKB|G4N0U7 - symbol:MGG_05817 "Nonsense-mediated mR... 99 0.00028 1
>WB|WBGene00012030 [details] [associations]
symbol:T25G3.3 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0016246
"RNA interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0071688 "striated muscle myosin
thick filament assembly" evidence=IMP] Pfam:PF04981 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0016246 GO:GO:0071688 GO:GO:0010171 GO:GO:0040011
GO:GO:0000003 EMBL:Z72516 eggNOG:COG1499
GeneTree:ENSGT00390000005104 HOGENOM:HOG000168152 KO:K07562
InterPro:IPR007064 PIR:T25285 RefSeq:NP_492114.2
ProteinModelPortal:Q22792 STRING:Q22792 PaxDb:Q22792
EnsemblMetazoa:T25G3.3.1 EnsemblMetazoa:T25G3.3.2 GeneID:3565801
KEGG:cel:CELE_T25G3.3 UCSC:T25G3.3.1 CTD:3565801 WormBase:T25G3.3
InParanoid:Q22792 OMA:LTIQKEX NextBio:957909 Uniprot:Q22792
Length = 513
Score = 164 (62.8 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 40/83 (48%), Positives = 54/83 (65%)
Query: 6 NIVP-DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIP-VDANDINTEDEDPDAPRI 63
NIV +TAS +++ FM D+EED L R+ +NIYK + P VD +D ED PDAP
Sbjct: 429 NIVGNETASVADEFQGFMEDIEEDALMREKINIYKDAEKGPNVDGDD--AEDH-PDAP-- 483
Query: 64 TLEEMLDDLTIDDVDMEEEVTSD 86
TL EMLDDL DD +M+E +++
Sbjct: 484 TLAEMLDDLKFDDEEMKEAESAE 506
>CGD|CAL0001704 [details] [associations]
symbol:NMD3 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0000055 "ribosomal large subunit export from nucleus"
evidence=IEA] CGD:CAL0001704 Pfam:PF04981 EMBL:AACQ01000183
EMBL:AACQ01000182 eggNOG:COG1499 HOGENOM:HOG000168152 KO:K07562
InterPro:IPR007064 RefSeq:XP_711779.1 RefSeq:XP_711797.1
STRING:Q59PZ4 GeneID:3646613 GeneID:3646614 KEGG:cal:CaO19.706
KEGG:cal:CaO19.8325 Uniprot:Q59PZ4
Length = 520
Score = 155 (59.6 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 34/74 (45%), Positives = 48/74 (64%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYKAG---PEIPVDANDINTEDEDPD--APRITLEEM 68
A DY F+ +LEED RQ +N+YKAG P++ + +D+N EDED D AP I ++E+
Sbjct: 446 AERDYELFLQELEEDDELRQTINLYKAGENQPQVSRNHDDMNDEDEDDDEDAPEIGIDEL 505
Query: 69 LD---DLTIDDVDM 79
LD D+T+DD M
Sbjct: 506 LDELDDMTLDDTPM 519
>ZFIN|ZDB-GENE-050320-149 [details] [associations]
symbol:nmd3 "NMD3 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0015031 "protein transport" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] Pfam:PF04981 ZFIN:ZDB-GENE-050320-149 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0015031 CTD:51068 eggNOG:COG1499
GeneTree:ENSGT00390000005104 HOGENOM:HOG000168152
HOVERGEN:HBG055100 KO:K07562 OMA:PVCKDNV OrthoDB:EOG43BMNM
InterPro:IPR007064 EMBL:BC090467 IPI:IPI00507258
RefSeq:NP_001013587.1 UniGene:Dr.79205 STRING:Q5BLF0
Ensembl:ENSDART00000021299 GeneID:541444 KEGG:dre:541444
InParanoid:Q5BLF0 NextBio:20879251 Bgee:Q5BLF0 Uniprot:Q5BLF0
Length = 505
Score = 150 (57.9 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 31/69 (44%), Positives = 49/69 (71%)
Query: 10 DTASANND--YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEE 67
D A +++ Y EF+ DLEED + R+N+NI++ +IPV+ +D T+D+ APRI+L E
Sbjct: 429 DAADTDDERQYTEFLEDLEEDEMLRKNINIFRDASKIPVEESD--TDDDG--APRISLAE 484
Query: 68 MLDDLTIDD 76
ML+DL++ D
Sbjct: 485 MLEDLSLSD 493
>SGD|S000001213 [details] [associations]
symbol:NMD3 "Protein involved in nuclear export of the large
ribosomal subunit" species:4932 "Saccharomyces cerevisiae"
[GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA]
[GO:0043023 "ribosomal large subunit binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000055
"ribosomal large subunit export from nucleus" evidence=IMP]
[GO:0006810 "transport" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
SGD:S000001213 Pfam:PF04981 GO:GO:0005829 GO:GO:0005654
GO:GO:0015031 EMBL:BK006934 EMBL:U00027 GO:GO:0000055 GO:GO:0043023
eggNOG:COG1499 GeneTree:ENSGT00390000005104 HOGENOM:HOG000168152
KO:K07562 OMA:PVCKDNV InterPro:IPR007064 OrthoDB:EOG40311R
EMBL:U31376 PIR:S48909 RefSeq:NP_012040.1 ProteinModelPortal:P38861
DIP:DIP-1827N IntAct:P38861 MINT:MINT-389613 STRING:P38861
PaxDb:P38861 PeptideAtlas:P38861 EnsemblFungi:YHR170W GeneID:856575
KEGG:sce:YHR170W NextBio:982429 Genevestigator:P38861
GermOnline:YHR170W Uniprot:P38861
Length = 518
Score = 145 (56.1 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 30/71 (42%), Positives = 49/71 (69%)
Query: 14 ANNDYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDL 72
A DY F+ +LEED RQ+VN+YK +P + ++++ EDED DAP+I ++E+LD+L
Sbjct: 442 AEKDYELFLQELEEDAELRQSVNLYKNREANVPPEEHEMD-EDEDEDAPQINIDELLDEL 500
Query: 73 TIDDVDMEEEV 83
D++ +E+ V
Sbjct: 501 --DEMTLEDGV 509
>UNIPROTKB|I3LDB7 [details] [associations]
symbol:NMD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] Pfam:PF04981
GO:GO:0005730 GeneTree:ENSGT00390000005104 OMA:PVCKDNV
InterPro:IPR007064 EMBL:CU928899 Ensembl:ENSSSCT00000024911
Uniprot:I3LDB7
Length = 507
Score = 140 (54.3 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 36/76 (47%), Positives = 47/76 (61%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEML 69
DT + Y +F+ DLEED R+NVNIY+ P IPV+++ T+DE APRI+L EML
Sbjct: 432 DTDN-ERQYQDFLEDLEEDEAIRKNVNIYR-DPTIPVESD---TDDEG--APRISLAEML 484
Query: 70 DDLTIDDVDMEEEVTS 85
+DL I EE S
Sbjct: 485 EDLHISQDATGEEARS 500
>UNIPROTKB|C9JA08 [details] [associations]
symbol:NMD3 "60S ribosomal export protein NMD3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Pfam:PF04981 GO:GO:0005730
HOGENOM:HOG000168152 OMA:PVCKDNV InterPro:IPR007064 HGNC:HGNC:24250
EMBL:AC021649 EMBL:AC108738 IPI:IPI00797406
ProteinModelPortal:C9JA08 STRING:C9JA08 PRIDE:C9JA08
Ensembl:ENST00000472947 UCSC:uc003fec.3 ArrayExpress:C9JA08
Bgee:C9JA08 Uniprot:C9JA08
Length = 529
Score = 131 (51.2 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 33/68 (48%), Positives = 43/68 (63%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDV 77
Y +F+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDSA-IPVESD---TDDEG--APRISLAEMLEDLHISQD 492
Query: 78 DMEEEVTS 85
EE S
Sbjct: 493 ATGEEAKS 500
>UNIPROTKB|Q96D46 [details] [associations]
symbol:NMD3 "60S ribosomal export protein NMD3"
species:9606 "Homo sapiens" [GO:0015031 "protein transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Pfam:PF04981 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0015031 EMBL:CH471052 CTD:51068
eggNOG:COG1499 HOGENOM:HOG000168152 HOVERGEN:HBG055100 KO:K07562
InterPro:IPR007064 EMBL:AF132941 EMBL:BC013317 IPI:IPI00790937
RefSeq:NP_057022.2 UniGene:Hs.598836 ProteinModelPortal:Q96D46
DIP:DIP-53427N IntAct:Q96D46 STRING:Q96D46 PhosphoSite:Q96D46
DMDM:74731412 PaxDb:Q96D46 PRIDE:Q96D46 DNASU:51068
Ensembl:ENST00000351193 Ensembl:ENST00000460469 GeneID:51068
KEGG:hsa:51068 UCSC:uc003feb.1 GeneCards:GC03P160822
H-InvDB:HIX0003824 HGNC:HGNC:24250 HPA:HPA035019 MIM:611021
neXtProt:NX_Q96D46 PharmGKB:PA134884140 InParanoid:Q96D46
PhylomeDB:Q96D46 GenomeRNAi:51068 NextBio:53671 ArrayExpress:Q96D46
Bgee:Q96D46 CleanEx:HS_NMD3 Genevestigator:Q96D46 Uniprot:Q96D46
Length = 503
Score = 129 (50.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 33/65 (50%), Positives = 43/65 (66%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTID-D 76
Y +F+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I D
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDSA-IPVESD---TDDEG--APRISLAEMLEDLHISQD 492
Query: 77 VDMEE 81
EE
Sbjct: 493 ATGEE 497
>RGD|1308468 [details] [associations]
symbol:Nmd3 "NMD3 homolog (S. cerevisiae)" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] RGD:1308468 Pfam:PF04981 GO:GO:0005730
EMBL:CH473976 CTD:51068 eggNOG:COG1499 GeneTree:ENSGT00390000005104
HOGENOM:HOG000168152 HOVERGEN:HBG055100 KO:K07562 OrthoDB:EOG43BMNM
InterPro:IPR007064 EMBL:BC161998 IPI:IPI00762953
RefSeq:NP_001101152.1 UniGene:Rn.61090 STRING:B1WC44
Ensembl:ENSRNOT00000012417 Ensembl:ENSRNOT00000064244 GeneID:310512
KEGG:rno:310512 UCSC:RGD:1308468 NextBio:662089
Genevestigator:B1WC44 Uniprot:B1WC44
Length = 503
Score = 129 (50.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 32/65 (49%), Positives = 43/65 (66%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTID-D 76
Y +F+ DLEED R+NVNIY+ +PV+++ T+DE APRI+L EML+DL I D
Sbjct: 439 YQDFLEDLEEDETIRKNVNIYRDST-VPVESD---TDDEG--APRISLAEMLEDLRISQD 492
Query: 77 VDMEE 81
EE
Sbjct: 493 ATGEE 497
>UNIPROTKB|E1BTL9 [details] [associations]
symbol:NMD3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005730 "nucleolus" evidence=IEA] Pfam:PF04981
GO:GO:0005730 CTD:51068 GeneTree:ENSGT00390000005104 KO:K07562
OMA:PVCKDNV InterPro:IPR007064 EMBL:AADN02021063 EMBL:AADN02021062
IPI:IPI00591200 RefSeq:XP_422813.2 Ensembl:ENSGALT00000015516
GeneID:425009 KEGG:gga:425009 NextBio:20827260 Uniprot:E1BTL9
Length = 504
Score = 129 (50.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 29/59 (49%), Positives = 42/59 (71%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 76
Y +F+ DLEED R+NVNIY+ +IPV+++ T+D+ APRI+L EML+DL I +
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYR-NADIPVESD---TDDDG--APRISLAEMLEDLHISE 491
>POMBASE|SPAC16C9.03 [details] [associations]
symbol:nmd3 "export adaptor Nmd3 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000027 "ribosomal
large subunit assembly" evidence=ISO] [GO:0000054 "ribosomal
subunit export from nucleus" evidence=ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0015031 "protein transport"
evidence=IEA] PomBase:SPAC16C9.03 Pfam:PF04981 GO:GO:0005829
GO:GO:0005634 GO:GO:0005654 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0015031 GO:GO:0000027 GO:GO:0000054 eggNOG:COG1499
HOGENOM:HOG000168152 KO:K07562 OMA:PVCKDNV InterPro:IPR007064
PIR:S62473 RefSeq:NP_593077.1 STRING:Q09817
EnsemblFungi:SPAC16C9.03.1 GeneID:2542319 KEGG:spo:SPAC16C9.03
OrthoDB:EOG40311R NextBio:20803380 Uniprot:Q09817
Length = 498
Score = 128 (50.1 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 29/65 (44%), Positives = 41/65 (63%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPE-IPVDANDINTEDE-DPDAPRITLEE 67
D DY F+ +LEED RQ VN+YKA + I V D++ EDE D D P+I+++E
Sbjct: 429 DIERQERDYELFLQNLEEDPELRQGVNLYKAPVKAIAVADTDMDEEDEVDEDIPQISVDE 488
Query: 68 MLDDL 72
+LDD+
Sbjct: 489 LLDDV 493
>UNIPROTKB|Q08DS5 [details] [associations]
symbol:NMD3 "60S ribosomal export protein NMD3"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
Pfam:PF04981 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0015031 EMBL:BC123588 IPI:IPI00711949 RefSeq:NP_001068888.1
UniGene:Bt.27265 STRING:Q08DS5 PRIDE:Q08DS5
Ensembl:ENSBTAT00000021594 GeneID:509871 KEGG:bta:509871 CTD:51068
eggNOG:COG1499 GeneTree:ENSGT00390000005104 HOGENOM:HOG000168152
HOVERGEN:HBG055100 InParanoid:Q08DS5 KO:K07562 OMA:PVCKDNV
OrthoDB:EOG43BMNM NextBio:20869176 ArrayExpress:Q08DS5
InterPro:IPR007064 Uniprot:Q08DS5
Length = 503
Score = 126 (49.4 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 30/57 (52%), Positives = 40/57 (70%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 74
Y +F+ DLEED R+NVNIY+ IPV+++ T+DE APRI+L EML+DL I
Sbjct: 439 YQDFLEDLEEDEAIRKNVNIYRDST-IPVESD---TDDEG--APRISLAEMLEDLHI 489
>FB|FBgn0023542 [details] [associations]
symbol:Nmd3 "Nonsense-mediated mRNA 3" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000055 "ribosomal large subunit export from nucleus"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] Pfam:PF04981
GO:GO:0022008 EMBL:AE014298 EMBL:AL009194 CTD:51068 eggNOG:COG1499
GeneTree:ENSGT00390000005104 KO:K07562 OMA:PVCKDNV
InterPro:IPR007064 EMBL:AY058494 RefSeq:NP_477332.1 UniGene:Dm.7201
IntAct:O46050 MINT:MINT-746738 STRING:O46050
EnsemblMetazoa:FBtr0070425 GeneID:31195 KEGG:dme:Dmel_CG3460
UCSC:CG3460-RA FlyBase:FBgn0023542 InParanoid:O46050
OrthoDB:EOG473N6G ChiTaRS:NMD3 GenomeRNAi:31195 NextBio:772403
Uniprot:O46050
Length = 521
Score = 126 (49.4 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 31/73 (42%), Positives = 46/73 (63%)
Query: 17 DYNEFMNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTID 75
DY+EF++DLEE+ R VNIY+ IP++ + D P+ITLEEML+D+T++
Sbjct: 448 DYHEFLDDLEENEDIRGQVNIYRDTNKTIPIEV-----QAAGGDVPQITLEEMLEDMTLE 502
Query: 76 --DVDMEEEVTSD 86
D +M EE +D
Sbjct: 503 CADDEMGEEGGAD 515
>MGI|MGI:2140103 [details] [associations]
symbol:Nmd3 "NMD3 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000055 "ribosomal large subunit export from
nucleus" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006810 "transport"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=ISO]
MGI:MGI:2140103 Pfam:PF04981 GO:GO:0005737 GO:GO:0005654
GO:GO:0005730 GO:GO:0015031 CTD:51068 eggNOG:COG1499
GeneTree:ENSGT00390000005104 HOGENOM:HOG000168152
HOVERGEN:HBG055100 KO:K07562 OMA:PVCKDNV OrthoDB:EOG43BMNM
InterPro:IPR007064 EMBL:AK034772 EMBL:AK088667 EMBL:AK143289
EMBL:AK145248 EMBL:AK166283 EMBL:BC003842 IPI:IPI00116309
IPI:IPI00881976 RefSeq:NP_598548.1 UniGene:Mm.21062
UniGene:Mm.439485 ProteinModelPortal:Q99L48 STRING:Q99L48
PhosphoSite:Q99L48 PaxDb:Q99L48 PRIDE:Q99L48
Ensembl:ENSMUST00000029358 GeneID:97112 KEGG:mmu:97112
UCSC:uc008pmk.1 UCSC:uc008pml.1 InParanoid:Q99L48 NextBio:352527
Bgee:Q99L48 CleanEx:MM_NMD3 Genevestigator:Q99L48 Uniprot:Q99L48
Length = 503
Score = 124 (48.7 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 32/65 (49%), Positives = 43/65 (66%)
Query: 18 YNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTID-D 76
Y +F+ DLEED R++VNIY+ IPV+++ T+DE APRI+L EML+DL I D
Sbjct: 439 YQDFLEDLEEDEAIRKHVNIYRDAT-IPVESD---TDDEG--APRISLAEMLEDLHISQD 492
Query: 77 VDMEE 81
EE
Sbjct: 493 ATGEE 497
>ASPGD|ASPL0000044316 [details] [associations]
symbol:AN1711 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0000055 "ribosomal large subunit export from
nucleus" evidence=IEA] Pfam:PF04981 EMBL:BN001307 EMBL:AACD01000026
GO:GO:0000055 GO:GO:0043023 GO:GO:0022625 eggNOG:COG1499
HOGENOM:HOG000168152 KO:K07562 OMA:PVCKDNV InterPro:IPR007064
OrthoDB:EOG40311R RefSeq:XP_659315.1 STRING:Q5BCL9
EnsemblFungi:CADANIAT00008354 GeneID:2875408 KEGG:ani:AN1711.2
Uniprot:Q5BCL9
Length = 511
Score = 108 (43.1 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 24/81 (29%), Positives = 49/81 (60%)
Query: 7 IVPDTA-SANNDYNEFMNDLEEDVLYRQNVNIYKAGPE---IPVDANDINTEDEDPDAPR 62
++P+ S ND+ F+ D+EED R + +YK + + V D+ +D+D + P+
Sbjct: 432 LLPNNKESVENDFEMFLRDVEEDQELRATLALYKNKKKDDTMSVADTDMMNDDDD-EVPK 490
Query: 63 ITLEEMLDDLTIDDVDMEEEV 83
I+++E+LDD DD+++++ +
Sbjct: 491 ISMDELLDDF--DDLEIDDNM 509
>TAIR|locus:2044299 [details] [associations]
symbol:NMD3 "AT2G03820" species:3702 "Arabidopsis
thaliana" [GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006611 "protein export from nucleus"
evidence=IMP] [GO:0007029 "endoplasmic reticulum organization"
evidence=IMP] [GO:0009834 "secondary cell wall biogenesis"
evidence=IMP] Pfam:PF04981 GO:GO:0005829 GO:GO:0005634
EMBL:CP002685 GO:GO:0006611 GO:GO:0007029 GO:GO:0009834 KO:K07562
OMA:PVCKDNV InterPro:IPR007064 EMBL:AC007196 EMBL:AY099778
EMBL:AY128878 IPI:IPI00544052 PIR:F84452 RefSeq:NP_178476.1
UniGene:At.20649 IntAct:Q9SI58 STRING:Q9SI58 PRIDE:Q9SI58
EnsemblPlants:AT2G03820.1 GeneID:814908 KEGG:ath:AT2G03820
TAIR:At2g03820 InParanoid:Q9SI58 PhylomeDB:Q9SI58
ProtClustDB:CLSN2683854 Genevestigator:Q9SI58 Uniprot:Q9SI58
Length = 516
Score = 103 (41.3 bits), Expect = 0.00010, P = 0.00010
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 1 MTDATNIVPDTASANNDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDA 60
M D+ V D + +Y EF+ DLEE+ R N+++Y+ + A++ + + A
Sbjct: 431 MDDSRGRV-DPEKTDKEYEEFLRDLEENPELRFNISLYR---DKDYQASETASMTDGEGA 486
Query: 61 PRITLEEMLDDLTIDDVDMEEEVTSDQ 87
P + +EE+L DL D+ EEE D+
Sbjct: 487 PSVPIEELLADL---DLSFEEEDDDDE 510
>UNIPROTKB|G4N0U7 [details] [associations]
symbol:MGG_05817 "Nonsense-mediated mRNA decay protein 3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] Pfam:PF04981 EMBL:CM001233 GO:GO:0000055 GO:GO:0043023
GO:GO:0022625 KO:K07562 InterPro:IPR007064 RefSeq:XP_003712132.1
EnsemblFungi:MGG_05817T0 GeneID:2684158 KEGG:mgr:MGG_05817
Uniprot:G4N0U7
Length = 525
Score = 99 (39.9 bits), Expect = 0.00028, P = 0.00028
Identities = 22/81 (27%), Positives = 48/81 (59%)
Query: 10 DTASANNDYNEFMNDLEEDVLYRQNVNIYK-----AGPE---IPVDANDINTEDEDPDAP 61
D + +Y +F+ D+EED R + +YK P+ + V ++ +DED +AP
Sbjct: 447 DQERLDAEYEQFLRDVEEDEELRATLALYKNTKKTKKPDADAMSVAETEMTYDDEDDNAP 506
Query: 62 RITLEEMLDDLTIDDVDMEEE 82
+++++E+LDD+ +++ +E++
Sbjct: 507 KVSMDELLDDM--EELAIEDQ 525
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.306 0.129 0.353 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 87 87 0.00091 102 3 11 23 0.44 30
29 0.48 30
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 16
No. of states in DFA: 418 (45 KB)
Total size of DFA: 86 KB (2068 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.92u 0.08s 13.00t Elapsed: 00:00:09
Total cpu time: 12.92u 0.08s 13.00t Elapsed: 00:00:09
Start: Thu Aug 15 12:50:52 2013 End: Thu Aug 15 12:51:01 2013