RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13019
         (87 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.5 bits (60), Expect = 0.53
 Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 6/51 (11%)

Query: 28  DVLYRQNVNIYKAGPEIPVDAN------DINTEDEDPDAPRITLEEMLDDL 72
             L  +   + +   E  +  N       I TE   P        E  D L
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119


>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken
           ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A
           {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
          Length = 457

 Score = 24.5 bits (54), Expect = 4.8
 Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 7/35 (20%)

Query: 45  PVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDM 79
           PVD           +    T + +L D    +VDM
Sbjct: 344 PVDM----IASARGEDYYRTAKLLLQD---PNVDM 371


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.306    0.129    0.353 

Gapped
Lambda     K      H
   0.267   0.0769    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,401,225
Number of extensions: 76442
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 14
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 51 (23.3 bits)