RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13019
         (87 letters)



>d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia
          coli [TaxId: 562]}
          Length = 87

 Score = 22.5 bits (48), Expect = 6.7
 Identities = 7/41 (17%), Positives = 14/41 (34%)

Query: 16 NDYNEFMNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDE 56
             +E +   E   +  +   +YK    I V   ++  E  
Sbjct: 39 AVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETR 79


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.306    0.129    0.353 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 332,266
Number of extensions: 14035
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 4
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 47 (22.1 bits)