BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1302
         (225 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DE2|A Chain A, Crystal Structure Of Desulfurization Enzyme Dszb
          Length = 365

 Score = 28.1 bits (61), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 159 TLNFDICPNNCKNYQGPKVAPSILSVLQAALQDEADIDVDVKSTASKKIHRANKTPLYPK 218
           TL +  CP          V  ++L+  ++   D A I++DV S     +H     P Y +
Sbjct: 21  TLTYSNCP----------VPNALLTASESGFLDAAGIELDVLSGQQGTVHFTYDQPAYTR 70

Query: 219 PRGLVP 224
             G +P
Sbjct: 71  FGGEIP 76


>pdb|2ZDI|A Chain A, Crystal Structure Of Prefoldin From Pyrococcus Horikoshii
           Ot3
 pdb|2ZDI|B Chain B, Crystal Structure Of Prefoldin From Pyrococcus Horikoshii
           Ot3
          Length = 117

 Score = 28.1 bits (61), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 11  KEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQ 51
           KE++ +E++    TLE  + A N++ QKI  K +E+ Q IQ
Sbjct: 68  KEKAVQELKEKIETLEVRLNALNRQEQKINEKVKELTQKIQ 108


>pdb|2DE3|A Chain A, Crystal Structure Of Dszb C27s Mutant In Complex With 2'-
           Hydroxybiphenyl-2-Sulfinic Acid
 pdb|2DE3|B Chain B, Crystal Structure Of Dszb C27s Mutant In Complex With 2'-
           Hydroxybiphenyl-2-Sulfinic Acid
 pdb|2DE4|A Chain A, Crystal Structure Of Dszb C27s Mutant In Complex With
           Biphenyl-2- Sulfinic Acid
 pdb|2DE4|B Chain B, Crystal Structure Of Dszb C27s Mutant In Complex With
           Biphenyl-2- Sulfinic Acid
          Length = 365

 Score = 27.3 bits (59), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 15/63 (23%), Positives = 26/63 (41%)

Query: 162 FDICPNNCKNYQGPKVAPSILSVLQAALQDEADIDVDVKSTASKKIHRANKTPLYPKPRG 221
            D    +   Y    V  ++L+  ++   D A I++DV S     +H     P Y +  G
Sbjct: 14  LDSAIRDTLTYSNSPVPNALLTASESGFLDAAGIELDVLSGQQGTVHFTYDQPAYTRFGG 73

Query: 222 LVP 224
            +P
Sbjct: 74  EIP 76


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.131    0.364 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,136,860
Number of Sequences: 62578
Number of extensions: 231491
Number of successful extensions: 811
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 764
Number of HSP's gapped (non-prelim): 72
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)