Query psy1302
Match_columns 225
No_of_seqs 143 out of 199
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 17:19:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4280|consensus 98.6 2E-08 4.4E-13 98.4 2.1 87 16-102 488-574 (574)
2 PRK11637 AmiB activator; Provi 92.8 1.4 3.1E-05 41.8 11.3 55 18-72 80-134 (428)
3 PF06810 Phage_GP20: Phage min 91.7 1.8 3.9E-05 36.2 9.3 81 15-95 22-106 (155)
4 PRK11637 AmiB activator; Provi 91.3 2.7 5.8E-05 40.0 11.2 54 3-56 51-104 (428)
5 PF08317 Spc7: Spc7 kinetochor 91.0 1.4 3.1E-05 40.5 8.8 86 19-113 215-300 (325)
6 PF00038 Filament: Intermediat 90.5 4.6 0.0001 36.2 11.4 65 16-80 212-276 (312)
7 KOG0243|consensus 89.4 4.7 0.0001 43.0 11.8 83 2-84 451-533 (1041)
8 PRK10780 periplasmic chaperone 89.3 6.1 0.00013 32.8 10.5 75 9-85 39-125 (165)
9 PF04156 IncA: IncA protein; 89.2 8.4 0.00018 32.2 11.4 39 16-54 112-150 (191)
10 TIGR03185 DNA_S_dndD DNA sulfu 89.2 3.4 7.4E-05 41.4 10.4 76 4-79 207-282 (650)
11 smart00787 Spc7 Spc7 kinetocho 88.8 2.4 5.3E-05 39.2 8.4 90 15-113 206-295 (312)
12 PF00038 Filament: Intermediat 87.6 7.9 0.00017 34.7 10.8 81 2-82 57-140 (312)
13 PF03962 Mnd1: Mnd1 family; I 87.1 5.8 0.00013 34.0 9.2 87 17-108 66-155 (188)
14 PF11932 DUF3450: Protein of u 86.9 20 0.00043 31.6 12.8 56 3-58 39-94 (251)
15 PF07926 TPR_MLP1_2: TPR/MLP1/ 86.6 11 0.00023 30.3 10.0 60 24-83 63-129 (132)
16 PF11559 ADIP: Afadin- and alp 86.2 11 0.00025 30.5 10.1 46 16-61 69-114 (151)
17 PRK10884 SH3 domain-containing 86.1 16 0.00034 32.0 11.5 21 3-23 97-117 (206)
18 PRK13729 conjugal transfer pil 85.8 2 4.4E-05 42.0 6.3 38 7-44 70-107 (475)
19 PF15272 BBP1_C: Spindle pole 85.3 8.5 0.00018 33.6 9.3 69 13-81 82-154 (196)
20 COG2433 Uncharacterized conser 84.9 11 0.00024 38.2 11.0 79 6-85 422-500 (652)
21 PF04156 IncA: IncA protein; 84.4 15 0.00032 30.7 10.3 54 8-61 97-150 (191)
22 PF11559 ADIP: Afadin- and alp 84.4 17 0.00036 29.5 10.3 66 10-75 77-142 (151)
23 PF07926 TPR_MLP1_2: TPR/MLP1/ 84.2 17 0.00036 29.2 10.1 63 3-65 28-90 (132)
24 PF07106 TBPIP: Tat binding pr 84.2 12 0.00026 31.0 9.5 86 18-108 77-162 (169)
25 KOG0250|consensus 84.1 7 0.00015 41.8 9.6 67 13-79 394-463 (1074)
26 PF10186 Atg14: UV radiation r 84.0 23 0.00049 31.0 11.8 45 5-49 62-106 (302)
27 KOG1962|consensus 83.9 4.9 0.00011 35.6 7.3 54 12-65 150-203 (216)
28 cd07307 BAR The Bin/Amphiphysi 83.8 13 0.00029 29.3 9.4 62 15-76 96-163 (194)
29 PF13870 DUF4201: Domain of un 83.6 25 0.00053 29.3 11.4 68 3-70 53-120 (177)
30 PHA02562 46 endonuclease subun 83.3 18 0.00039 35.0 11.6 22 67-88 407-428 (562)
31 PF12718 Tropomyosin_1: Tropom 83.1 16 0.00035 30.0 9.7 21 16-36 38-58 (143)
32 TIGR03007 pepcterm_ChnLen poly 82.9 29 0.00062 33.3 12.8 75 35-110 325-399 (498)
33 TIGR00606 rad50 rad50. This fa 82.8 12 0.00025 40.9 11.1 82 2-84 825-906 (1311)
34 COG1579 Zn-ribbon protein, pos 82.8 16 0.00034 32.9 10.2 56 4-59 43-100 (239)
35 PRK14143 heat shock protein Gr 82.8 9.4 0.0002 34.2 8.8 44 23-66 70-113 (238)
36 PF12329 TMF_DNA_bd: TATA elem 82.7 16 0.00036 26.7 9.1 67 3-73 2-68 (74)
37 PF09403 FadA: Adhesion protei 82.7 16 0.00035 29.7 9.3 65 21-85 46-119 (126)
38 COG3883 Uncharacterized protei 82.5 13 0.00028 34.0 9.6 58 15-72 40-100 (265)
39 PF09738 DUF2051: Double stran 82.3 8.5 0.00019 35.6 8.6 41 23-63 108-148 (302)
40 PRK10884 SH3 domain-containing 81.6 21 0.00046 31.2 10.4 26 5-30 92-117 (206)
41 PHA02562 46 endonuclease subun 81.3 8 0.00017 37.4 8.4 75 14-88 331-415 (562)
42 PF03938 OmpH: Outer membrane 81.2 15 0.00033 29.5 8.9 69 13-81 36-109 (158)
43 PF10186 Atg14: UV radiation r 80.9 35 0.00076 29.8 11.8 9 104-112 173-181 (302)
44 PF06005 DUF904: Protein of un 80.4 20 0.00044 26.3 9.6 48 16-63 7-54 (72)
45 PRK14160 heat shock protein Gr 80.2 18 0.00039 31.9 9.5 17 80-96 112-129 (211)
46 COG1196 Smc Chromosome segrega 80.1 20 0.00043 38.6 11.6 82 4-85 826-910 (1163)
47 PRK03918 chromosome segregatio 79.7 20 0.00044 36.6 11.1 40 16-55 662-701 (880)
48 PRK14161 heat shock protein Gr 79.6 12 0.00026 32.1 8.0 80 9-97 7-88 (178)
49 PF06657 Cep57_MT_bd: Centroso 78.7 25 0.00053 26.2 8.9 53 32-84 15-75 (79)
50 COG0216 PrfA Protein chain rel 78.1 19 0.0004 34.2 9.3 64 14-78 34-102 (363)
51 PRK14148 heat shock protein Gr 77.9 18 0.00038 31.5 8.6 70 19-97 39-109 (195)
52 PF10498 IFT57: Intra-flagella 77.9 6.4 0.00014 37.2 6.4 50 4-53 271-320 (359)
53 KOG0161|consensus 77.7 17 0.00038 41.4 10.4 82 2-87 911-999 (1930)
54 PRK02224 chromosome segregatio 77.5 29 0.00063 35.7 11.5 54 4-57 347-400 (880)
55 PRK14163 heat shock protein Gr 77.2 20 0.00044 31.6 8.9 45 23-67 43-87 (214)
56 PF15397 DUF4618: Domain of un 77.1 32 0.00069 31.3 10.3 56 15-70 76-149 (258)
57 COG3883 Uncharacterized protei 76.6 29 0.00062 31.8 9.9 32 23-54 62-93 (265)
58 PF12718 Tropomyosin_1: Tropom 76.6 40 0.00087 27.6 10.1 9 70-78 77-85 (143)
59 PF10267 Tmemb_cc2: Predicted 76.6 30 0.00066 33.3 10.5 74 3-76 216-293 (395)
60 TIGR03185 DNA_S_dndD DNA sulfu 76.5 16 0.00036 36.6 9.2 75 2-76 212-286 (650)
61 PF04111 APG6: Autophagy prote 76.2 23 0.00049 32.7 9.4 26 88-113 126-151 (314)
62 PRK11020 hypothetical protein; 75.9 13 0.00029 29.9 6.7 48 24-71 2-50 (118)
63 cd07627 BAR_Vps5p The Bin/Amph 75.9 23 0.00049 30.6 8.8 65 14-78 109-180 (216)
64 KOG0288|consensus 75.8 35 0.00075 33.3 10.6 63 4-66 11-73 (459)
65 TIGR02169 SMC_prok_A chromosom 75.7 31 0.00068 36.0 11.3 10 191-200 1103-1112(1164)
66 PRK14162 heat shock protein Gr 75.4 23 0.00051 30.8 8.7 68 21-97 40-108 (194)
67 PF05082 Rop-like: Rop-like; 75.3 6.3 0.00014 28.8 4.3 30 27-56 2-31 (66)
68 PRK11546 zraP zinc resistance 75.3 28 0.00061 29.0 8.8 53 16-68 57-116 (143)
69 PF13851 GAS: Growth-arrest sp 74.5 56 0.0012 28.2 11.7 29 59-87 121-153 (201)
70 PRK14153 heat shock protein Gr 74.3 38 0.00082 29.5 9.7 69 21-98 34-103 (194)
71 PRK14158 heat shock protein Gr 74.2 27 0.00059 30.4 8.8 67 22-97 42-109 (194)
72 PF03954 Lectin_N: Hepatic lec 74.1 13 0.00028 30.8 6.4 66 13-78 62-131 (138)
73 TIGR03545 conserved hypothetic 74.0 84 0.0018 31.5 13.3 40 34-73 219-258 (555)
74 PRK14154 heat shock protein Gr 73.9 28 0.00062 30.6 8.9 67 21-96 53-120 (208)
75 PF10211 Ax_dynein_light: Axon 73.9 41 0.0009 28.8 9.8 38 15-52 122-159 (189)
76 PRK00106 hypothetical protein; 73.6 34 0.00074 34.1 10.4 42 29-70 113-154 (535)
77 PF05667 DUF812: Protein of un 73.5 35 0.00075 34.5 10.5 72 26-97 327-402 (594)
78 cd07665 BAR_SNX1 The Bin/Amphi 73.4 25 0.00054 31.4 8.6 62 14-75 127-193 (234)
79 PF07851 TMPIT: TMPIT-like pro 73.3 42 0.0009 31.6 10.4 26 64-89 66-94 (330)
80 PF07106 TBPIP: Tat binding pr 72.3 45 0.00096 27.6 9.5 27 4-30 77-103 (169)
81 COG5185 HEC1 Protein involved 71.8 44 0.00095 33.3 10.4 84 1-84 332-425 (622)
82 PF06005 DUF904: Protein of un 71.8 37 0.0008 24.9 9.4 54 7-60 5-58 (72)
83 KOG0995|consensus 71.6 61 0.0013 32.7 11.5 86 2-87 428-513 (581)
84 KOG0161|consensus 71.5 37 0.00079 38.9 11.0 76 3-78 1066-1144(1930)
85 PF07888 CALCOCO1: Calcium bin 71.5 40 0.00087 33.8 10.3 23 4-26 176-198 (546)
86 PRK00888 ftsB cell division pr 71.1 9.5 0.00021 29.8 4.8 35 21-55 28-62 (105)
87 KOG1029|consensus 71.0 24 0.00051 37.1 8.7 85 4-88 421-508 (1118)
88 PRK14145 heat shock protein Gr 70.9 29 0.00062 30.3 8.2 44 23-66 48-91 (196)
89 PF15290 Syntaphilin: Golgi-lo 70.7 34 0.00073 31.7 8.8 56 30-85 71-136 (305)
90 PF07544 Med9: RNA polymerase 70.6 11 0.00024 28.1 4.9 47 38-85 32-78 (83)
91 PF08581 Tup_N: Tup N-terminal 70.2 43 0.00093 25.1 10.4 41 36-76 34-74 (79)
92 PRK00409 recombination and DNA 70.2 37 0.00081 35.2 10.2 6 172-177 709-714 (782)
93 PRK09039 hypothetical protein; 69.9 57 0.0012 30.5 10.6 52 5-56 115-166 (343)
94 PF05266 DUF724: Protein of un 69.9 23 0.00049 30.6 7.3 48 12-59 130-184 (190)
95 PRK14160 heat shock protein Gr 69.7 58 0.0013 28.7 9.9 49 17-65 58-106 (211)
96 PRK14141 heat shock protein Gr 69.6 42 0.0009 29.6 9.0 66 23-97 34-100 (209)
97 cd07651 F-BAR_PombeCdc15_like 69.4 76 0.0016 27.6 10.8 33 35-67 151-183 (236)
98 PRK14155 heat shock protein Gr 68.8 53 0.0012 28.8 9.5 67 23-98 16-83 (208)
99 PF01025 GrpE: GrpE; InterPro 68.7 14 0.00029 30.2 5.5 48 19-66 10-57 (165)
100 TIGR03545 conserved hypothetic 68.7 34 0.00074 34.2 9.2 58 43-100 214-273 (555)
101 PF13851 GAS: Growth-arrest sp 68.5 53 0.0011 28.4 9.4 27 15-41 95-121 (201)
102 KOG0996|consensus 68.5 54 0.0012 35.8 11.0 67 15-81 393-462 (1293)
103 smart00787 Spc7 Spc7 kinetocho 68.3 44 0.00095 31.0 9.3 19 13-31 172-190 (312)
104 PF04849 HAP1_N: HAP1 N-termin 68.0 55 0.0012 30.6 9.8 34 21-54 214-247 (306)
105 KOG0250|consensus 67.9 36 0.00078 36.7 9.5 23 60-82 395-417 (1074)
106 KOG0977|consensus 67.8 55 0.0012 32.9 10.4 68 13-80 141-218 (546)
107 PF07200 Mod_r: Modifier of ru 67.8 44 0.00096 26.9 8.3 56 3-58 31-86 (150)
108 COG4942 Membrane-bound metallo 67.7 76 0.0017 30.9 11.0 42 2-43 41-82 (420)
109 PF10168 Nup88: Nuclear pore c 67.6 28 0.00061 35.9 8.6 64 9-76 554-617 (717)
110 KOG0239|consensus 66.8 55 0.0012 33.6 10.4 35 22-56 229-263 (670)
111 PRK14146 heat shock protein Gr 66.7 48 0.001 29.2 8.8 66 22-96 56-122 (215)
112 PRK04778 septation ring format 66.7 46 0.001 33.0 9.7 50 14-63 370-419 (569)
113 PF06705 SF-assemblin: SF-asse 66.6 81 0.0018 27.7 10.4 51 23-73 73-124 (247)
114 PF12777 MT: Microtubule-bindi 66.6 32 0.0007 31.9 8.2 57 25-85 233-289 (344)
115 PF09177 Syntaxin-6_N: Syntaxi 66.6 38 0.00082 25.6 7.2 56 22-77 3-64 (97)
116 PF10473 CENP-F_leu_zip: Leuci 66.4 74 0.0016 26.3 10.4 41 18-58 50-90 (140)
117 PRK14144 heat shock protein Gr 66.0 46 0.00099 29.1 8.5 69 21-98 46-115 (199)
118 PRK12704 phosphodiesterase; Pr 65.5 41 0.00088 33.3 9.0 11 45-55 121-131 (520)
119 KOG0995|consensus 65.3 85 0.0018 31.7 11.1 26 2-27 297-322 (581)
120 COG0576 GrpE Molecular chapero 65.1 66 0.0014 27.7 9.3 41 25-65 41-81 (193)
121 cd07664 BAR_SNX2 The Bin/Amphi 64.9 48 0.001 29.5 8.6 62 14-75 127-193 (234)
122 PF00261 Tropomyosin: Tropomyo 64.8 55 0.0012 28.7 8.9 15 62-76 172-186 (237)
123 PRK14140 heat shock protein Gr 64.7 93 0.002 27.0 10.1 15 82-96 90-105 (191)
124 TIGR01005 eps_transp_fam exopo 64.4 1.7E+02 0.0037 29.8 14.1 42 65-110 375-416 (754)
125 PF04977 DivIC: Septum formati 64.1 14 0.00031 26.1 4.3 32 22-53 19-50 (80)
126 PF14988 DUF4515: Domain of un 63.4 95 0.0021 27.0 10.0 42 5-46 28-73 (206)
127 COG2919 Septum formation initi 63.3 14 0.0003 29.2 4.4 37 20-56 50-86 (117)
128 TIGR02894 DNA_bind_RsfA transc 63.0 70 0.0015 27.2 8.7 51 24-74 101-151 (161)
129 PRK01156 chromosome segregatio 63.0 56 0.0012 33.9 9.8 48 6-53 197-244 (895)
130 PF03938 OmpH: Outer membrane 62.9 53 0.0011 26.3 7.9 25 42-66 88-112 (158)
131 PF04102 SlyX: SlyX; InterPro 62.8 30 0.00065 24.8 5.7 51 4-54 2-52 (69)
132 KOG0243|consensus 62.7 86 0.0019 33.9 11.1 72 18-89 446-527 (1041)
133 PF04012 PspA_IM30: PspA/IM30 62.4 99 0.0022 26.4 10.2 84 2-85 33-117 (221)
134 PF08317 Spc7: Spc7 kinetochor 62.3 34 0.00074 31.5 7.4 80 2-81 212-291 (325)
135 PRK14151 heat shock protein Gr 62.1 35 0.00075 29.1 6.9 67 21-96 21-88 (176)
136 PRK14157 heat shock protein Gr 62.0 76 0.0016 28.4 9.2 64 25-97 82-146 (227)
137 PF12777 MT: Microtubule-bindi 61.8 54 0.0012 30.4 8.7 53 5-57 220-272 (344)
138 PRK14147 heat shock protein Gr 61.5 39 0.00084 28.7 7.1 64 24-96 22-86 (172)
139 PF03961 DUF342: Protein of un 61.3 65 0.0014 30.9 9.4 66 18-83 332-406 (451)
140 PRK14140 heat shock protein Gr 60.9 37 0.0008 29.5 6.9 39 25-63 42-80 (191)
141 PF12325 TMF_TATA_bd: TATA ele 59.9 49 0.0011 26.6 7.0 57 3-59 20-86 (120)
142 COG1579 Zn-ribbon protein, pos 59.4 1.4E+02 0.0029 27.0 12.8 58 48-105 131-191 (239)
143 COG2433 Uncharacterized conser 59.3 83 0.0018 32.1 9.9 73 3-79 440-512 (652)
144 PF09738 DUF2051: Double stran 59.3 1.5E+02 0.0033 27.5 11.1 21 37-57 115-135 (302)
145 PF01496 V_ATPase_I: V-type AT 59.2 75 0.0016 32.6 9.9 75 24-98 226-309 (759)
146 PF08580 KAR9: Yeast cortical 58.8 69 0.0015 33.0 9.5 78 13-90 242-330 (683)
147 cd07623 BAR_SNX1_2 The Bin/Amp 58.7 71 0.0015 27.8 8.5 60 15-74 118-182 (224)
148 PF12711 Kinesin-relat_1: Kine 58.7 63 0.0014 24.7 7.1 52 23-74 27-85 (86)
149 TIGR03319 YmdA_YtgF conserved 58.5 77 0.0017 31.4 9.5 23 36-58 99-121 (514)
150 KOG4809|consensus 58.4 94 0.002 31.5 9.9 81 3-83 349-445 (654)
151 COG1422 Predicted membrane pro 57.5 54 0.0012 28.8 7.4 55 20-74 58-120 (201)
152 PF03962 Mnd1: Mnd1 family; I 57.4 1.2E+02 0.0027 25.9 10.6 80 4-83 67-152 (188)
153 PF00261 Tropomyosin: Tropomyo 57.3 1.3E+02 0.0028 26.3 9.9 34 5-38 126-159 (237)
154 PF08826 DMPK_coil: DMPK coile 57.2 69 0.0015 22.9 6.7 37 35-75 19-55 (61)
155 PF10212 TTKRSYEDQ: Predicted 57.2 91 0.002 31.2 9.7 73 3-75 424-496 (518)
156 PF09726 Macoilin: Transmembra 56.8 1.2E+02 0.0027 31.3 10.9 25 60-84 546-570 (697)
157 COG1196 Smc Chromosome segrega 56.7 1.1E+02 0.0025 33.0 11.1 47 7-53 240-286 (1163)
158 PRK14139 heat shock protein Gr 56.6 49 0.0011 28.6 6.9 65 22-95 34-99 (185)
159 PF14662 CCDC155: Coiled-coil 56.6 1.4E+02 0.003 26.2 10.4 7 47-53 66-72 (193)
160 PF11083 Streptin-Immun: Lanti 56.1 37 0.0008 26.7 5.5 38 42-79 53-90 (99)
161 PRK14149 heat shock protein Gr 55.6 1.1E+02 0.0023 26.7 8.9 61 28-97 44-105 (191)
162 cd07596 BAR_SNX The Bin/Amphip 55.5 1.2E+02 0.0025 25.0 9.8 60 16-75 113-179 (218)
163 COG4942 Membrane-bound metallo 55.5 1.4E+02 0.0031 29.1 10.5 27 9-35 55-81 (420)
164 PRK09039 hypothetical protein; 54.9 1.8E+02 0.004 27.1 11.6 8 104-111 217-224 (343)
165 KOG0804|consensus 54.9 93 0.002 30.7 9.1 57 3-59 343-407 (493)
166 PF02403 Seryl_tRNA_N: Seryl-t 54.9 82 0.0018 23.9 7.4 27 16-42 32-58 (108)
167 PF09744 Jnk-SapK_ap_N: JNK_SA 54.8 1.3E+02 0.0028 25.3 9.6 44 41-84 71-114 (158)
168 KOG4603|consensus 54.8 98 0.0021 26.9 8.3 56 29-84 81-141 (201)
169 PF10174 Cast: RIM-binding pro 54.8 1.5E+02 0.0032 31.1 11.2 78 7-84 323-403 (775)
170 PRK14150 heat shock protein Gr 54.7 1.2E+02 0.0025 26.3 9.0 25 40-64 58-82 (193)
171 PF11544 Spc42p: Spindle pole 54.6 29 0.00062 26.0 4.5 42 3-44 9-50 (76)
172 TIGR03752 conj_TIGR03752 integ 54.5 1.1E+02 0.0023 30.4 9.5 16 60-75 124-139 (472)
173 KOG4643|consensus 54.5 42 0.00092 36.1 7.2 43 12-54 176-218 (1195)
174 TIGR03017 EpsF chain length de 54.3 1.9E+02 0.0041 27.1 13.7 105 3-111 258-383 (444)
175 COG1340 Uncharacterized archae 54.1 1.9E+02 0.004 27.0 11.2 44 15-58 174-217 (294)
176 PRK00106 hypothetical protein; 54.0 86 0.0019 31.4 9.1 32 26-57 117-148 (535)
177 KOG0996|consensus 53.7 88 0.0019 34.3 9.4 13 179-191 705-717 (1293)
178 PF04849 HAP1_N: HAP1 N-termin 53.3 85 0.0018 29.3 8.3 71 2-72 163-237 (306)
179 KOG2129|consensus 52.9 2E+02 0.0043 28.4 10.9 44 61-104 291-334 (552)
180 PF09731 Mitofilin: Mitochondr 52.7 2.2E+02 0.0048 28.0 11.7 33 51-83 363-395 (582)
181 PF08826 DMPK_coil: DMPK coile 52.3 84 0.0018 22.4 7.8 43 24-66 15-57 (61)
182 PF10146 zf-C4H2: Zinc finger- 51.9 1.7E+02 0.0038 26.0 11.3 33 41-73 53-88 (230)
183 COG4026 Uncharacterized protei 51.7 57 0.0012 29.6 6.7 34 66-103 170-203 (290)
184 TIGR03592 yidC_oxa1_cterm memb 51.6 44 0.00095 28.1 5.8 41 38-78 26-66 (181)
185 COG4026 Uncharacterized protei 51.6 51 0.0011 29.9 6.3 49 10-58 132-180 (290)
186 COG3879 Uncharacterized protei 51.2 1E+02 0.0022 28.0 8.2 51 32-82 55-105 (247)
187 PRK00736 hypothetical protein; 51.2 44 0.00095 24.1 4.9 41 5-45 11-51 (68)
188 cd00632 Prefoldin_beta Prefold 51.0 46 0.001 25.4 5.4 28 31-58 67-94 (105)
189 PRK10361 DNA recombination pro 50.9 1.4E+02 0.0031 29.5 9.9 67 7-73 100-179 (475)
190 COG4372 Uncharacterized protei 50.8 1.9E+02 0.0041 28.3 10.3 47 8-54 132-178 (499)
191 PF04102 SlyX: SlyX; InterPro 50.5 27 0.00059 25.1 3.8 45 3-47 8-52 (69)
192 PRK05771 V-type ATP synthase s 50.3 1.1E+02 0.0023 30.8 9.2 75 23-97 211-293 (646)
193 COG1340 Uncharacterized archae 50.2 2.2E+02 0.0047 26.5 12.5 96 5-100 19-121 (294)
194 PF05667 DUF812: Protein of un 49.8 1.4E+02 0.003 30.3 9.8 40 35-74 395-434 (594)
195 KOG0612|consensus 49.6 1.7E+02 0.0037 32.3 10.8 66 12-78 622-693 (1317)
196 PF07111 HCR: Alpha helical co 49.6 2E+02 0.0043 30.0 10.8 20 57-76 240-259 (739)
197 PF10805 DUF2730: Protein of u 49.5 1.2E+02 0.0026 23.5 8.4 35 18-53 27-61 (106)
198 KOG0972|consensus 49.4 38 0.00082 31.8 5.3 49 4-52 278-326 (384)
199 PRK05431 seryl-tRNA synthetase 49.4 93 0.002 29.9 8.3 31 58-88 79-109 (425)
200 PF01025 GrpE: GrpE; InterPro 49.3 12 0.00026 30.5 2.0 58 42-99 19-82 (165)
201 PF04012 PspA_IM30: PspA/IM30 49.3 1.1E+02 0.0024 26.1 8.0 38 17-54 95-132 (221)
202 TIGR01843 type_I_hlyD type I s 49.2 1.7E+02 0.0037 26.8 9.8 35 24-58 148-182 (423)
203 PF09731 Mitofilin: Mitochondr 49.1 2.4E+02 0.0051 27.8 11.3 35 48-82 307-342 (582)
204 PF11932 DUF3450: Protein of u 49.1 1.9E+02 0.004 25.4 9.8 30 18-47 40-69 (251)
205 PF09728 Taxilin: Myosin-like 49.0 2.2E+02 0.0047 26.3 10.4 68 12-79 21-91 (309)
206 PF09602 PhaP_Bmeg: Polyhydrox 48.7 1.5E+02 0.0032 25.4 8.4 52 25-76 39-95 (165)
207 KOG1962|consensus 48.0 2E+02 0.0044 25.6 9.6 38 19-56 143-180 (216)
208 COG5420 Uncharacterized conser 47.8 35 0.00075 25.0 3.9 26 30-55 9-34 (71)
209 TIGR01554 major_cap_HK97 phage 47.6 98 0.0021 28.7 8.0 54 1-54 1-54 (378)
210 PRK04863 mukB cell division pr 47.5 2E+02 0.0043 32.4 11.3 34 49-82 439-472 (1486)
211 TIGR00998 8a0101 efflux pump m 47.4 2.1E+02 0.0045 25.5 10.1 53 7-59 81-133 (334)
212 PF00769 ERM: Ezrin/radixin/mo 47.4 1.4E+02 0.003 26.6 8.6 18 59-76 75-92 (246)
213 PF06160 EzrA: Septation ring 47.2 1.8E+02 0.004 28.9 10.2 79 6-84 101-186 (560)
214 cd07672 F-BAR_PSTPIP2 The F-BA 47.0 2.1E+02 0.0045 25.4 11.3 48 34-81 154-201 (240)
215 PF14073 Cep57_CLD: Centrosome 46.9 1.7E+02 0.0038 25.2 8.7 83 2-84 7-89 (178)
216 PF07200 Mod_r: Modifier of ru 46.9 81 0.0017 25.3 6.5 54 6-59 41-94 (150)
217 KOG0239|consensus 46.7 2.2E+02 0.0049 29.3 10.9 57 15-71 229-285 (670)
218 KOG0612|consensus 46.7 1.7E+02 0.0037 32.3 10.3 38 18-55 492-529 (1317)
219 PF05377 FlaC_arch: Flagella a 46.6 1E+02 0.0022 21.7 7.3 46 33-85 6-51 (55)
220 PRK14159 heat shock protein Gr 46.1 1.8E+02 0.004 24.8 8.8 60 28-96 31-91 (176)
221 PRK14156 heat shock protein Gr 46.0 1.3E+02 0.0029 25.7 7.9 63 25-96 32-95 (177)
222 PF14282 FlxA: FlxA-like prote 46.0 1.1E+02 0.0024 23.7 6.9 53 24-76 16-68 (106)
223 PF00170 bZIP_1: bZIP transcri 45.9 99 0.0021 21.4 7.2 33 16-48 29-61 (64)
224 KOG0447|consensus 45.9 91 0.002 32.1 7.7 53 33-85 225-288 (980)
225 KOG2264|consensus 45.8 1E+02 0.0022 31.7 8.0 56 2-57 82-137 (907)
226 KOG4673|consensus 45.8 1.3E+02 0.0028 31.5 8.8 38 35-76 726-763 (961)
227 PF09325 Vps5: Vps5 C terminal 45.7 1.3E+02 0.0028 25.5 7.9 22 17-38 132-153 (236)
228 PF10168 Nup88: Nuclear pore c 45.6 3.7E+02 0.008 27.9 12.6 22 50-71 630-651 (717)
229 PF15619 Lebercilin: Ciliary p 45.2 1.7E+02 0.0036 25.3 8.5 43 17-59 58-100 (194)
230 PF02841 GBP_C: Guanylate-bind 45.2 1.9E+02 0.0041 26.1 9.3 27 42-68 237-263 (297)
231 PRK14162 heat shock protein Gr 44.8 2.1E+02 0.0046 24.9 9.3 48 39-86 44-92 (194)
232 cd07653 F-BAR_CIP4-like The F- 44.7 1.4E+02 0.003 25.8 8.1 42 12-53 104-145 (251)
233 COG1382 GimC Prefoldin, chaper 44.6 62 0.0013 26.2 5.3 21 30-50 87-107 (119)
234 PF13094 CENP-Q: CENP-Q, a CEN 44.6 1E+02 0.0022 25.2 6.9 13 45-57 45-57 (160)
235 KOG4360|consensus 44.5 1.8E+02 0.0039 29.3 9.4 34 4-37 217-250 (596)
236 PF10473 CENP-F_leu_zip: Leuci 44.3 1.8E+02 0.004 24.0 11.9 85 4-92 29-116 (140)
237 PF12128 DUF3584: Protein of u 44.3 2.5E+02 0.0054 30.6 11.3 10 63-72 707-716 (1201)
238 TIGR00414 serS seryl-tRNA synt 44.1 1.1E+02 0.0023 29.4 7.8 29 60-88 84-112 (418)
239 KOG0977|consensus 43.9 2.1E+02 0.0046 28.8 10.0 73 5-77 112-198 (546)
240 KOG0804|consensus 43.8 3.4E+02 0.0073 27.0 11.1 20 42-61 383-402 (493)
241 PF13815 Dzip-like_N: Iguana/D 43.8 37 0.00081 26.7 3.9 32 23-54 83-114 (118)
242 PF09766 FimP: Fms-interacting 43.6 84 0.0018 29.5 6.9 55 4-58 96-153 (355)
243 PF15188 CCDC-167: Coiled-coil 42.9 1.5E+02 0.0032 22.6 7.5 56 24-79 2-63 (85)
244 PRK14143 heat shock protein Gr 42.7 1.4E+02 0.0031 26.7 7.9 65 33-97 66-136 (238)
245 KOG4360|consensus 42.6 1.5E+02 0.0032 29.9 8.5 40 17-56 209-248 (596)
246 PRK00846 hypothetical protein; 42.5 71 0.0015 23.9 5.0 15 34-48 41-55 (77)
247 PRK04778 septation ring format 42.5 1.5E+02 0.0031 29.5 8.7 17 16-32 358-374 (569)
248 PLN02678 seryl-tRNA synthetase 42.3 1.5E+02 0.0033 28.9 8.6 30 59-88 85-114 (448)
249 PF13815 Dzip-like_N: Iguana/D 42.3 59 0.0013 25.5 4.9 35 16-50 83-117 (118)
250 PRK13729 conjugal transfer pil 42.2 1.1E+02 0.0023 30.3 7.5 35 42-76 77-114 (475)
251 PF10498 IFT57: Intra-flagella 42.2 2.4E+02 0.0053 26.7 9.7 12 43-54 275-286 (359)
252 PRK00846 hypothetical protein; 42.1 1.3E+02 0.0028 22.5 6.3 35 12-46 26-60 (77)
253 PF11418 Scaffolding_pro: Phi2 41.7 1.6E+02 0.0036 22.7 7.8 49 28-76 20-71 (97)
254 PF12128 DUF3584: Protein of u 41.6 2E+02 0.0043 31.4 10.1 51 12-62 627-677 (1201)
255 KOG0964|consensus 41.5 1.9E+02 0.0041 31.5 9.5 76 1-76 330-435 (1200)
256 PF10234 Cluap1: Clusterin-ass 41.4 2.8E+02 0.0061 25.4 9.9 28 61-88 220-248 (267)
257 COG3879 Uncharacterized protei 41.3 79 0.0017 28.6 6.0 72 18-99 35-106 (247)
258 PF05911 DUF869: Plant protein 41.1 3.1E+02 0.0068 28.8 11.0 52 3-54 593-644 (769)
259 cd07653 F-BAR_CIP4-like The F- 41.0 2.4E+02 0.0051 24.4 10.3 34 3-36 116-149 (251)
260 TIGR02231 conserved hypothetic 40.9 2.6E+02 0.0056 27.2 10.1 28 2-29 74-101 (525)
261 PF10146 zf-C4H2: Zinc finger- 40.8 2.2E+02 0.0048 25.3 8.8 16 60-75 61-76 (230)
262 PRK10803 tol-pal system protei 40.6 1.2E+02 0.0026 27.2 7.2 23 34-56 54-76 (263)
263 PRK05431 seryl-tRNA synthetase 40.6 1.7E+02 0.0036 28.2 8.5 53 27-79 28-86 (425)
264 PF06810 Phage_GP20: Phage min 40.5 1.9E+02 0.004 24.1 7.8 50 25-75 18-67 (155)
265 COG0419 SbcC ATPase involved i 40.4 3.5E+02 0.0076 28.4 11.5 73 17-89 692-769 (908)
266 PRK14158 heat shock protein Gr 40.4 1.8E+02 0.0038 25.3 7.9 43 35-77 41-83 (194)
267 PF06476 DUF1090: Protein of u 40.2 58 0.0013 25.9 4.6 19 33-51 95-113 (115)
268 KOG0963|consensus 39.5 4E+02 0.0086 27.4 11.1 80 29-108 280-371 (629)
269 smart00502 BBC B-Box C-termina 39.4 1.6E+02 0.0034 21.9 11.1 40 4-43 12-51 (127)
270 PF13094 CENP-Q: CENP-Q, a CEN 39.4 1.7E+02 0.0038 23.8 7.5 38 22-59 43-80 (160)
271 PF11068 YlqD: YlqD protein; 39.4 1.9E+02 0.0042 23.5 7.5 62 17-78 24-86 (131)
272 KOG0980|consensus 39.3 3.2E+02 0.007 29.3 10.7 6 162-167 608-613 (980)
273 PF09403 FadA: Adhesion protei 39.2 2.1E+02 0.0045 23.2 8.7 35 47-81 88-122 (126)
274 PF09730 BicD: Microtubule-ass 39.1 1.9E+02 0.004 30.2 9.0 57 17-73 356-412 (717)
275 PF12958 DUF3847: Protein of u 39.0 1.7E+02 0.0038 22.3 9.0 64 25-98 6-75 (86)
276 PF05008 V-SNARE: Vesicle tran 38.6 1.4E+02 0.0031 21.2 6.3 46 31-76 22-71 (79)
277 PF10805 DUF2730: Protein of u 38.4 1.3E+02 0.0028 23.3 6.2 56 22-77 37-97 (106)
278 PF06160 EzrA: Septation ring 38.3 3.5E+02 0.0077 26.9 10.7 67 22-88 96-165 (560)
279 PRK11519 tyrosine kinase; Prov 38.1 4.6E+02 0.0099 26.8 13.4 106 2-112 277-412 (719)
280 PF08946 Osmo_CC: Osmosensory 38.0 70 0.0015 21.8 3.9 31 12-42 4-34 (46)
281 COG1842 PspA Phage shock prote 38.0 2.9E+02 0.0062 24.5 10.2 83 2-84 34-117 (225)
282 PRK02793 phi X174 lysis protei 38.0 1.5E+02 0.0032 21.5 6.1 25 24-48 26-50 (72)
283 PF11348 DUF3150: Protein of u 38.0 2E+02 0.0042 25.9 8.1 56 42-100 82-142 (257)
284 PF12709 Kinetocho_Slk19: Cent 37.9 1.1E+02 0.0025 23.4 5.6 30 35-64 50-79 (87)
285 TIGR00219 mreC rod shape-deter 37.7 54 0.0012 29.8 4.5 43 38-80 70-112 (283)
286 PF10359 Fmp27_WPPW: RNA pol I 37.6 1E+02 0.0023 29.9 6.7 59 31-89 167-230 (475)
287 PF07795 DUF1635: Protein of u 37.4 1.6E+02 0.0034 26.2 7.1 54 2-58 4-57 (214)
288 PF07798 DUF1640: Protein of u 37.4 2.5E+02 0.0053 23.5 9.9 21 56-76 110-130 (177)
289 TIGR00998 8a0101 efflux pump m 37.2 2E+02 0.0043 25.7 8.1 46 5-50 86-131 (334)
290 KOG3312|consensus 37.1 34 0.00073 29.1 2.8 22 20-41 34-55 (186)
291 PRK00295 hypothetical protein; 37.0 1.6E+02 0.0034 21.2 6.4 28 23-50 22-49 (68)
292 PF06193 Orthopox_A5L: Orthopo 36.9 2.4E+02 0.0052 24.1 7.9 49 30-78 110-158 (166)
293 PF05816 TelA: Toxic anion res 36.9 2E+02 0.0044 26.5 8.2 42 33-74 83-124 (333)
294 KOG3634|consensus 36.7 1.8E+02 0.0038 27.7 7.7 50 30-79 233-285 (361)
295 PF05837 CENP-H: Centromere pr 36.7 2E+02 0.0043 22.3 7.9 60 18-77 8-69 (106)
296 KOG0933|consensus 36.6 3.9E+02 0.0084 29.3 10.9 10 177-186 981-990 (1174)
297 PF04568 IATP: Mitochondrial A 36.5 72 0.0016 25.0 4.4 26 33-58 71-100 (100)
298 PRK10361 DNA recombination pro 36.5 3E+02 0.0065 27.3 9.6 38 27-64 60-97 (475)
299 PF05010 TACC: Transforming ac 36.3 3E+02 0.0065 24.2 10.9 28 42-69 144-171 (207)
300 PF13801 Metal_resist: Heavy-m 36.2 1.7E+02 0.0037 21.4 8.9 49 21-69 60-115 (125)
301 PF06548 Kinesin-related: Kine 36.1 4.2E+02 0.0091 26.3 10.4 34 43-76 387-420 (488)
302 KOG0971|consensus 36.1 79 0.0017 34.0 5.8 52 1-52 306-357 (1243)
303 PF09789 DUF2353: Uncharacteri 36.0 3.5E+02 0.0075 25.5 9.5 30 57-86 124-153 (319)
304 KOG2629|consensus 35.9 2.7E+02 0.0057 26.0 8.6 45 23-67 125-169 (300)
305 PF09787 Golgin_A5: Golgin sub 35.7 2.1E+02 0.0046 28.1 8.6 52 22-73 276-327 (511)
306 PF09388 SpoOE-like: Spo0E lik 35.7 1.1E+02 0.0024 19.9 4.7 44 3-46 1-44 (45)
307 PF11365 DUF3166: Protein of u 35.6 81 0.0018 24.6 4.5 43 2-44 4-46 (96)
308 PLN02320 seryl-tRNA synthetase 35.5 1.5E+02 0.0033 29.4 7.5 30 59-88 144-173 (502)
309 cd07648 F-BAR_FCHO The F-BAR ( 35.4 2.2E+02 0.0049 24.9 8.0 85 26-110 149-246 (261)
310 PF10174 Cast: RIM-binding pro 35.2 3E+02 0.0065 28.9 9.9 41 4-44 383-423 (775)
311 PF07798 DUF1640: Protein of u 35.2 2.7E+02 0.0058 23.3 10.4 18 67-84 117-134 (177)
312 PRK10636 putative ABC transpor 35.1 1.5E+02 0.0033 29.7 7.6 30 22-51 558-587 (638)
313 PF05701 WEMBL: Weak chloropla 34.9 1.7E+02 0.0038 28.8 7.8 32 21-52 275-306 (522)
314 COG5185 HEC1 Protein involved 34.9 3.3E+02 0.007 27.4 9.4 73 16-88 483-555 (622)
315 PF05335 DUF745: Protein of un 34.8 2.4E+02 0.0052 24.4 7.8 53 6-58 116-168 (188)
316 PRK14142 heat shock protein Gr 34.7 2.2E+02 0.0048 25.4 7.7 58 31-97 44-102 (223)
317 KOG0933|consensus 34.7 2E+02 0.0043 31.4 8.4 82 4-85 746-841 (1174)
318 PF06248 Zw10: Centromere/kine 34.6 3.6E+02 0.0079 26.7 10.1 77 3-83 18-100 (593)
319 cd07647 F-BAR_PSTPIP The F-BAR 34.5 3.1E+02 0.0068 23.9 11.1 34 18-51 104-137 (239)
320 TIGR02492 flgK_ends flagellar 34.4 2.1E+02 0.0046 26.1 7.9 50 27-76 134-183 (322)
321 PF03904 DUF334: Domain of unk 34.3 3.5E+02 0.0075 24.4 8.8 11 4-14 62-72 (230)
322 PF04645 DUF603: Protein of un 34.3 2.1E+02 0.0045 24.8 7.2 34 16-51 96-129 (181)
323 PF07851 TMPIT: TMPIT-like pro 34.3 3.6E+02 0.0078 25.5 9.4 17 13-29 4-20 (330)
324 PRK14155 heat shock protein Gr 34.3 1.7E+02 0.0036 25.7 6.9 33 4-36 18-50 (208)
325 PRK10780 periplasmic chaperone 34.3 2.6E+02 0.0057 22.9 9.4 23 35-57 51-73 (165)
326 PTZ00421 coronin; Provisional 34.3 1.4E+02 0.003 29.2 7.0 46 26-71 445-490 (493)
327 PF09789 DUF2353: Uncharacteri 34.2 1.8E+02 0.004 27.3 7.4 17 59-75 133-149 (319)
328 PF14662 CCDC155: Coiled-coil 34.2 3.2E+02 0.007 23.9 11.3 50 39-88 93-148 (193)
329 PRK13182 racA polar chromosome 34.1 3E+02 0.0064 23.5 9.1 51 29-79 87-145 (175)
330 PF03961 DUF342: Protein of un 34.1 2.5E+02 0.0054 26.9 8.6 27 27-53 334-360 (451)
331 PF05873 Mt_ATP-synt_D: ATP sy 34.0 76 0.0017 26.6 4.5 84 15-100 67-153 (161)
332 KOG2010|consensus 34.0 1.9E+02 0.0041 27.6 7.4 61 24-84 144-207 (405)
333 COG4372 Uncharacterized protei 34.0 4.1E+02 0.009 26.1 9.8 46 10-55 120-165 (499)
334 PLN02678 seryl-tRNA synthetase 33.9 2.3E+02 0.0049 27.7 8.3 56 27-82 33-94 (448)
335 PRK04863 mukB cell division pr 33.7 5.1E+02 0.011 29.4 11.8 9 67-75 405-413 (1486)
336 PF11629 Mst1_SARAH: C termina 33.6 95 0.0021 21.4 4.1 25 45-69 23-47 (49)
337 PF14932 HAUS-augmin3: HAUS au 33.6 3.4E+02 0.0075 24.1 9.6 73 12-84 67-139 (256)
338 KOG0962|consensus 33.4 3.6E+02 0.0078 30.1 10.3 87 1-88 821-911 (1294)
339 PF08549 SWI-SNF_Ssr4: Fungal 33.2 82 0.0018 32.4 5.3 62 38-99 368-429 (669)
340 PF05837 CENP-H: Centromere pr 33.1 2.2E+02 0.0047 22.1 6.7 16 46-61 56-71 (106)
341 PF01920 Prefoldin_2: Prefoldi 33.0 1.1E+02 0.0024 22.5 5.0 13 39-51 81-93 (106)
342 PF14915 CCDC144C: CCDC144C pr 32.9 4.2E+02 0.0091 24.8 11.1 71 16-86 154-241 (305)
343 KOG0994|consensus 32.7 3.6E+02 0.0077 30.3 9.9 41 5-45 1597-1637(1758)
344 PRK14127 cell division protein 32.6 1.5E+02 0.0032 23.6 5.7 41 13-53 30-70 (109)
345 PF10234 Cluap1: Clusterin-ass 32.6 3.9E+02 0.0085 24.4 9.6 40 7-46 177-216 (267)
346 KOG0240|consensus 32.6 2.1E+02 0.0045 29.2 7.9 62 12-73 413-474 (607)
347 PRK14164 heat shock protein Gr 32.5 3.5E+02 0.0075 24.0 8.6 61 27-96 77-138 (218)
348 TIGR03752 conj_TIGR03752 integ 32.4 3.2E+02 0.007 27.1 9.0 21 56-76 106-126 (472)
349 KOG4643|consensus 32.4 4.3E+02 0.0093 29.0 10.4 12 64-75 583-594 (1195)
350 PF01166 TSC22: TSC-22/dip/bun 32.3 82 0.0018 22.5 3.7 27 25-51 12-38 (59)
351 PF09304 Cortex-I_coil: Cortex 32.2 2.6E+02 0.0057 22.3 9.8 35 18-52 42-76 (107)
352 PRK14151 heat shock protein Gr 32.2 2.3E+02 0.0051 24.1 7.3 29 46-74 32-60 (176)
353 COG3352 FlaC Putative archaeal 32.0 2.8E+02 0.006 23.6 7.4 53 24-76 76-128 (157)
354 COG3352 FlaC Putative archaeal 31.9 3.2E+02 0.0069 23.2 7.9 52 8-59 46-97 (157)
355 KOG0240|consensus 31.9 3.4E+02 0.0074 27.7 9.2 53 4-56 426-478 (607)
356 PF15066 CAGE1: Cancer-associa 31.8 3.1E+02 0.0067 27.4 8.7 27 34-60 478-504 (527)
357 PF01920 Prefoldin_2: Prefoldi 31.8 1.7E+02 0.0037 21.5 5.8 29 30-58 65-93 (106)
358 PRK01885 greB transcription el 31.8 97 0.0021 25.7 4.8 59 19-78 9-73 (157)
359 KOG0998|consensus 31.7 75 0.0016 33.5 4.9 78 11-88 503-580 (847)
360 PF15619 Lebercilin: Ciliary p 31.5 3.4E+02 0.0074 23.4 8.7 52 3-54 86-145 (194)
361 PF00435 Spectrin: Spectrin re 31.5 1.8E+02 0.0039 20.2 8.7 31 16-46 37-67 (105)
362 KOG1003|consensus 31.2 1.3E+02 0.0028 26.6 5.5 32 42-73 166-197 (205)
363 PRK14148 heat shock protein Gr 30.9 3.2E+02 0.0069 23.7 8.0 52 35-86 41-93 (195)
364 PF09763 Sec3_C: Exocyst compl 30.9 4.2E+02 0.0091 26.9 10.0 86 15-104 32-117 (701)
365 PF08656 DASH_Dad3: DASH compl 30.7 2.3E+02 0.005 21.2 6.7 46 36-82 12-57 (78)
366 PLN03188 kinesin-12 family pro 30.7 4.1E+02 0.009 29.7 10.2 34 43-76 1157-1190(1320)
367 PRK00736 hypothetical protein; 30.3 2.1E+02 0.0045 20.5 6.1 34 17-50 16-49 (68)
368 PF08657 DASH_Spc34: DASH comp 30.1 2.8E+02 0.006 25.1 7.7 8 68-75 248-255 (259)
369 PF06705 SF-assemblin: SF-asse 30.0 3.8E+02 0.0082 23.4 10.2 32 39-70 119-150 (247)
370 PF10018 Med4: Vitamin-D-recep 29.6 2.1E+02 0.0046 24.2 6.6 19 67-85 44-62 (188)
371 PRK09343 prefoldin subunit bet 29.6 1.7E+02 0.0036 23.2 5.6 29 30-58 74-102 (121)
372 KOG4005|consensus 29.5 3E+02 0.0064 25.2 7.6 8 104-111 164-171 (292)
373 PF12709 Kinetocho_Slk19: Cent 29.4 2.6E+02 0.0057 21.4 8.9 22 55-76 45-66 (87)
374 cd00890 Prefoldin Prefoldin is 29.3 1.3E+02 0.0029 22.9 5.0 24 32-55 92-115 (129)
375 PF10046 BLOC1_2: Biogenesis o 29.2 2.6E+02 0.0056 21.3 10.4 60 12-72 27-86 (99)
376 PF05276 SH3BP5: SH3 domain-bi 29.1 4.2E+02 0.0092 23.7 10.0 24 15-38 144-167 (239)
377 PF10224 DUF2205: Predicted co 29.1 2E+02 0.0043 21.6 5.6 32 25-56 21-52 (80)
378 KOG3809|consensus 29.1 3.7E+02 0.0081 26.8 8.7 29 39-67 544-572 (583)
379 PF10224 DUF2205: Predicted co 28.9 2.5E+02 0.0055 21.1 7.4 46 31-87 20-65 (80)
380 PRK07739 flgK flagellar hook-a 28.9 2.6E+02 0.0056 27.4 7.9 49 28-76 147-195 (507)
381 KOG1029|consensus 28.9 5.2E+02 0.011 27.8 10.1 25 17-41 462-486 (1118)
382 PF14916 CCDC92: Coiled-coil d 28.6 1.8E+02 0.0038 20.8 4.9 37 40-76 2-38 (60)
383 PRK14156 heat shock protein Gr 28.6 3.8E+02 0.0082 23.0 8.8 37 41-77 34-70 (177)
384 PF02096 60KD_IMP: 60Kd inner 28.5 1.8E+02 0.0039 24.3 6.0 41 39-79 28-68 (198)
385 PF07716 bZIP_2: Basic region 28.2 1.9E+02 0.0041 19.4 5.3 9 64-72 44-52 (54)
386 KOG4460|consensus 28.1 2.3E+02 0.0049 29.0 7.3 36 48-83 637-672 (741)
387 PF04880 NUDE_C: NUDE protein, 28.0 1.2E+02 0.0026 25.9 4.7 10 66-75 38-47 (166)
388 KOG3647|consensus 27.9 4.7E+02 0.01 24.5 8.7 42 28-69 113-154 (338)
389 TIGR02977 phageshock_pspA phag 27.8 4E+02 0.0086 23.0 10.2 84 2-85 34-118 (219)
390 PF04129 Vps52: Vps52 / Sac2 f 27.7 5.9E+02 0.013 25.0 12.2 77 17-96 18-94 (508)
391 PF07334 IFP_35_N: Interferon- 27.6 1.5E+02 0.0032 22.2 4.6 20 39-58 12-31 (76)
392 TIGR00634 recN DNA repair prot 27.6 3.3E+02 0.0072 26.9 8.5 67 3-73 134-203 (563)
393 PF02388 FemAB: FemAB family; 27.6 1.4E+02 0.0031 28.3 5.7 27 56-82 270-296 (406)
394 KOG0018|consensus 27.5 4.7E+02 0.01 28.7 9.8 67 15-81 425-494 (1141)
395 PF15070 GOLGA2L5: Putative go 27.5 6.8E+02 0.015 25.6 11.4 20 67-86 252-271 (617)
396 PF10212 TTKRSYEDQ: Predicted 27.4 5.8E+02 0.013 25.6 9.9 64 20-83 448-511 (518)
397 cd07647 F-BAR_PSTPIP The F-BAR 27.2 3.2E+02 0.007 23.8 7.5 41 34-74 153-193 (239)
398 KOG3478|consensus 27.1 3.4E+02 0.0074 21.9 7.2 37 32-68 74-110 (120)
399 PRK05561 DNA topoisomerase IV 26.8 57 0.0012 33.8 3.0 47 16-62 440-486 (742)
400 cd07624 BAR_SNX7_30 The Bin/Am 26.8 4E+02 0.0086 22.6 8.5 61 14-84 117-179 (200)
401 PRK10869 recombination and rep 26.8 3.9E+02 0.0084 26.6 8.8 61 11-76 138-198 (553)
402 PF15035 Rootletin: Ciliary ro 26.8 3E+02 0.0066 23.5 7.1 69 4-75 114-182 (182)
403 PF07352 Phage_Mu_Gam: Bacteri 26.8 3.4E+02 0.0075 21.9 8.1 32 47-78 27-58 (149)
404 COG1842 PspA Phage shock prote 26.6 4E+02 0.0086 23.6 8.0 27 21-47 107-133 (225)
405 TIGR02977 phageshock_pspA phag 26.6 3.7E+02 0.0081 23.2 7.7 35 19-53 98-132 (219)
406 PRK03947 prefoldin subunit alp 26.4 3.3E+02 0.0071 21.6 7.1 39 24-62 91-129 (140)
407 PF05701 WEMBL: Weak chloropla 26.3 6E+02 0.013 25.1 10.0 48 18-65 279-326 (522)
408 PF10779 XhlA: Haemolysin XhlA 26.3 2.4E+02 0.0053 20.0 6.3 15 61-75 36-50 (71)
409 PF12329 TMF_DNA_bd: TATA elem 26.1 2.6E+02 0.0057 20.3 6.5 54 19-76 11-64 (74)
410 TIGR01010 BexC_CtrB_KpsE polys 26.0 5.2E+02 0.011 23.7 9.2 85 12-96 206-308 (362)
411 COG2900 SlyX Uncharacterized p 26.0 1.9E+02 0.0041 21.5 4.8 22 32-53 34-55 (72)
412 PF15397 DUF4618: Domain of un 26.0 5.1E+02 0.011 23.6 10.3 61 14-74 89-164 (258)
413 KOG4674|consensus 25.9 7.3E+02 0.016 28.9 11.3 54 10-63 651-704 (1822)
414 PF06785 UPF0242: Uncharacteri 25.9 5.1E+02 0.011 24.9 8.8 12 189-200 329-340 (401)
415 PRK03947 prefoldin subunit alp 25.9 3.4E+02 0.0073 21.5 10.8 36 49-84 91-126 (140)
416 PRK14163 heat shock protein Gr 25.8 3.5E+02 0.0075 24.0 7.4 59 39-97 45-109 (214)
417 PF04048 Sec8_exocyst: Sec8 ex 25.8 2.8E+02 0.0061 22.4 6.4 36 16-51 68-103 (142)
418 PRK00888 ftsB cell division pr 25.8 2.2E+02 0.0047 22.1 5.5 11 67-77 49-59 (105)
419 PF14282 FlxA: FlxA-like prote 25.6 2.3E+02 0.005 21.9 5.7 22 33-54 50-71 (106)
420 KOG4603|consensus 25.4 4.6E+02 0.0099 22.9 7.9 25 17-41 120-144 (201)
421 PF10046 BLOC1_2: Biogenesis o 25.4 3.1E+02 0.0066 20.9 9.9 66 16-82 17-82 (99)
422 PRK07521 flgK flagellar hook-a 25.2 4.3E+02 0.0093 25.7 8.7 39 38-76 133-171 (483)
423 PF04380 BMFP: Membrane fusoge 25.1 1.7E+02 0.0036 21.6 4.6 29 26-54 49-77 (79)
424 PF04977 DivIC: Septum formati 25.1 2.4E+02 0.0052 19.6 5.7 18 36-53 26-43 (80)
425 PRK06665 flgK flagellar hook-a 25.0 3.2E+02 0.0069 27.7 7.9 37 39-75 151-187 (627)
426 TIGR01063 gyrA DNA gyrase, A s 25.0 70 0.0015 33.4 3.3 49 15-63 429-477 (800)
427 PRK09841 cryptic autophosphory 25.0 7.6E+02 0.016 25.3 11.1 130 2-142 307-436 (726)
428 PRK10476 multidrug resistance 25.0 4E+02 0.0087 24.2 8.0 61 2-62 82-142 (346)
429 PF00769 ERM: Ezrin/radixin/mo 24.9 4.9E+02 0.011 23.1 9.6 46 2-47 22-67 (246)
430 PF15272 BBP1_C: Spindle pole 24.9 4.7E+02 0.01 22.9 9.2 46 3-48 23-79 (196)
431 COG4741 Predicted secreted end 24.9 4.4E+02 0.0096 22.5 7.8 52 22-73 24-77 (175)
432 PF08172 CASP_C: CASP C termin 24.6 1.8E+02 0.0039 26.1 5.5 54 31-88 83-139 (248)
433 TIGR01062 parC_Gneg DNA topois 24.5 67 0.0015 33.4 3.1 46 16-61 427-472 (735)
434 COG2900 SlyX Uncharacterized p 24.5 3E+02 0.0065 20.4 6.2 36 11-46 20-55 (72)
435 KOG4797|consensus 24.5 1.9E+02 0.0042 23.3 5.0 33 63-99 78-110 (123)
436 KOG1853|consensus 24.5 5.7E+02 0.012 23.7 11.7 54 29-82 54-107 (333)
437 PHA00489 scaffolding protein 24.5 3.4E+02 0.0074 21.1 8.0 58 17-74 10-70 (101)
438 PF05008 V-SNARE: Vesicle tran 24.5 2.6E+02 0.0057 19.8 5.6 21 38-58 58-78 (79)
439 KOG2115|consensus 24.5 7.9E+02 0.017 26.5 10.7 50 4-53 259-308 (951)
440 PRK06975 bifunctional uroporph 24.4 5.8E+02 0.013 26.0 9.7 23 7-29 347-369 (656)
441 PRK11546 zraP zinc resistance 24.3 2.9E+02 0.0063 23.0 6.3 28 18-45 48-76 (143)
442 PF08537 NBP1: Fungal Nap bind 24.3 2.8E+02 0.0061 26.2 6.8 41 27-67 175-217 (323)
443 PF05278 PEARLI-4: Arabidopsis 24.3 3.9E+02 0.0085 24.5 7.6 58 2-59 189-246 (269)
444 KOG2391|consensus 24.3 5.3E+02 0.012 24.7 8.6 49 33-81 227-275 (365)
445 PRK13979 DNA topoisomerase IV 24.3 66 0.0014 34.4 3.0 50 14-63 447-496 (957)
446 TIGR01061 parC_Gpos DNA topois 24.2 68 0.0015 33.2 3.0 44 18-61 432-475 (738)
447 PF15509 DUF4650: Domain of un 24.1 1.8E+02 0.004 29.0 5.8 50 27-76 307-375 (520)
448 KOG3859|consensus 24.1 6.3E+02 0.014 24.0 10.1 29 48-76 366-394 (406)
449 PF15070 GOLGA2L5: Putative go 24.1 7.8E+02 0.017 25.1 11.0 48 40-88 121-179 (617)
450 KOG3856|consensus 24.1 1.7E+02 0.0037 24.1 4.7 32 42-77 11-42 (135)
451 cd07674 F-BAR_FCHO1 The F-BAR 23.9 5.1E+02 0.011 22.9 10.4 20 90-109 226-245 (261)
452 TIGR02209 ftsL_broad cell divi 23.9 2.1E+02 0.0046 20.4 4.9 16 35-50 39-54 (85)
453 PF05911 DUF869: Plant protein 23.7 8.8E+02 0.019 25.6 11.1 19 39-57 139-157 (769)
454 PF06401 Alpha-2-MRAP_C: Alpha 23.7 1E+02 0.0023 27.3 3.7 27 33-59 5-35 (214)
455 PHA00727 hypothetical protein 23.4 4.2E+02 0.009 23.7 7.3 37 12-49 17-53 (278)
456 PRK14147 heat shock protein Gr 23.3 2.9E+02 0.0063 23.4 6.3 38 39-76 23-60 (172)
457 PRK10246 exonuclease subunit S 23.2 6.6E+02 0.014 27.0 10.2 93 3-97 693-785 (1047)
458 smart00338 BRLZ basic region l 23.1 2.6E+02 0.0056 19.2 7.1 56 2-57 8-63 (65)
459 PF04420 CHD5: CHD5-like prote 23.1 2.2E+02 0.0047 23.7 5.4 52 20-71 40-103 (161)
460 PF14182 YgaB: YgaB-like prote 23.1 2.5E+02 0.0054 21.2 5.1 41 10-50 30-70 (79)
461 cd07648 F-BAR_FCHO The F-BAR ( 23.1 5.1E+02 0.011 22.6 10.2 76 1-76 111-192 (261)
462 cd07667 BAR_SNX30 The Bin/Amph 23.0 5.6E+02 0.012 23.0 12.0 78 4-85 148-234 (240)
463 PRK14139 heat shock protein Gr 22.9 3.5E+02 0.0076 23.3 6.8 41 36-76 34-74 (185)
464 TIGR02680 conserved hypothetic 22.9 5.9E+02 0.013 28.4 9.9 75 1-75 877-951 (1353)
465 PRK09841 cryptic autophosphory 22.9 4.9E+02 0.011 26.6 8.9 68 17-84 257-329 (726)
466 PLN02320 seryl-tRNA synthetase 22.8 2.5E+02 0.0054 28.0 6.5 59 2-60 103-163 (502)
467 PF00956 NAP: Nucleosome assem 22.8 3.2E+02 0.0069 23.9 6.7 39 37-75 1-39 (244)
468 PF10158 LOH1CR12: Tumour supp 22.8 4.2E+02 0.0091 21.5 9.3 66 25-91 47-112 (131)
469 KOG0964|consensus 22.7 8E+02 0.017 27.0 10.3 84 1-84 399-485 (1200)
470 PF09755 DUF2046: Uncharacteri 22.7 6.5E+02 0.014 23.6 10.0 76 1-76 29-119 (310)
471 KOG4657|consensus 22.6 5.8E+02 0.013 23.1 10.3 77 3-83 48-124 (246)
472 PF02050 FliJ: Flagellar FliJ 22.5 3.1E+02 0.0067 19.9 12.5 84 2-85 15-103 (123)
473 PF10359 Fmp27_WPPW: RNA pol I 22.4 3.3E+02 0.0072 26.5 7.3 56 1-56 165-229 (475)
474 PRK10476 multidrug resistance 22.4 5.9E+02 0.013 23.1 10.0 77 17-96 83-159 (346)
475 PF02403 Seryl_tRNA_N: Seryl-t 22.2 3.5E+02 0.0075 20.3 8.1 70 6-75 29-101 (108)
476 KOG0993|consensus 22.2 5.5E+02 0.012 25.4 8.4 101 3-103 46-151 (542)
477 PRK10698 phage shock protein P 22.0 5.1E+02 0.011 22.6 7.7 58 2-59 88-145 (222)
478 PRK05560 DNA gyrase subunit A; 22.0 82 0.0018 32.9 3.1 49 13-61 430-478 (805)
479 PF07160 DUF1395: Protein of u 21.9 5.7E+02 0.012 22.8 9.0 67 21-88 1-78 (243)
480 TIGR01005 eps_transp_fam exopo 21.8 6.9E+02 0.015 25.4 9.7 73 1-73 318-401 (754)
481 PRK08147 flgK flagellar hook-a 21.7 4.2E+02 0.0092 26.1 7.9 54 23-76 131-184 (547)
482 KOG2896|consensus 21.7 7.3E+02 0.016 23.9 10.1 76 2-77 94-177 (377)
483 PF00804 Syntaxin: Syntaxin; 21.6 3.1E+02 0.0067 19.6 8.0 57 20-76 7-73 (103)
484 KOG3915|consensus 21.5 8.3E+02 0.018 24.6 9.6 61 25-85 505-565 (641)
485 PF05531 NPV_P10: Nucleopolyhe 21.5 2.8E+02 0.006 20.7 5.0 52 13-65 11-65 (75)
486 TIGR00414 serS seryl-tRNA synt 21.4 3.9E+02 0.0085 25.6 7.4 63 2-64 40-106 (418)
487 PF13807 GNVR: G-rich domain o 21.3 1.2E+02 0.0025 22.1 3.1 31 17-47 1-31 (82)
488 TIGR00293 prefoldin, archaeal 21.3 3.9E+02 0.0085 20.6 6.6 43 24-66 83-125 (126)
489 PF13863 DUF4200: Domain of un 21.2 3.8E+02 0.0083 20.5 11.3 88 1-88 30-120 (126)
490 COG1256 FlgK Flagellar hook-as 21.2 5.4E+02 0.012 25.9 8.5 52 25-76 136-187 (552)
491 KOG0976|consensus 21.1 5.6E+02 0.012 27.7 8.7 73 4-76 132-204 (1265)
492 PRK11448 hsdR type I restricti 20.9 5.5E+02 0.012 28.1 9.1 74 1-74 151-224 (1123)
493 PRK14150 heat shock protein Gr 20.8 5.5E+02 0.012 22.1 9.3 77 17-96 24-106 (193)
494 PRK14145 heat shock protein Gr 20.7 5.7E+02 0.012 22.3 8.6 62 12-73 30-91 (196)
495 cd07686 F-BAR_Fer The F-BAR (F 20.7 6.1E+02 0.013 22.6 8.8 72 2-73 115-190 (234)
496 KOG4657|consensus 20.7 6.4E+02 0.014 22.8 9.7 76 1-76 67-142 (246)
497 PF02996 Prefoldin: Prefoldin 20.6 3.8E+02 0.0083 20.2 6.3 47 24-70 74-120 (120)
498 PRK12901 secA preprotein trans 20.5 4.7E+02 0.01 28.8 8.3 80 6-85 18-110 (1112)
499 PRK14146 heat shock protein Gr 20.5 5E+02 0.011 22.9 7.3 51 36-86 56-107 (215)
500 PRK14141 heat shock protein Gr 20.5 4.4E+02 0.0094 23.2 6.9 48 39-86 36-84 (209)
No 1
>KOG4280|consensus
Probab=98.57 E-value=2e-08 Score=98.39 Aligned_cols=87 Identities=43% Similarity=0.601 Sum_probs=84.5
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q psy1302 16 EEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPIEELKRLE 95 (225)
Q Consensus 16 ~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~ee~~kI~ 95 (225)
.++...|++++++++.++++++|++.++..+++|+.|+..+|.+++++++++++++.+++++..+|+++|||.++...+.
T Consensus 488 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~el~l~~~~~~~~~~~~~~~~~~ 567 (574)
T KOG4280|consen 488 PELLERYSSLQEEAESKSKKLSKLLLKLLAARQEIVDIASEHLREREALEEGIRELSKELKLLLLILDNFIPTELKRIIE 567 (574)
T ss_pred cccccccccccccchhhHHHHHHHHHHHhhhhccccccchhhhHHHHhhhhhhhHHHHHHhhhhhhhhccCChhhhcccc
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhccccc
Q psy1302 96 QRLVYDE 102 (225)
Q Consensus 96 ~~a~wdE 102 (225)
....|++
T Consensus 568 ~~~~~~~ 574 (574)
T KOG4280|consen 568 DELSSDE 574 (574)
T ss_pred ccccccC
Confidence 9999975
No 2
>PRK11637 AmiB activator; Provisional
Probab=92.82 E-value=1.4 Score=41.75 Aligned_cols=55 Identities=13% Similarity=0.229 Sum_probs=23.2
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 18 IRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELL 72 (225)
Q Consensus 18 le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~ 72 (225)
++.+...+++++......|+.+..++..++.+|.+++.+....+..|-.-++.+-
T Consensus 80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y 134 (428)
T PRK11637 80 QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAF 134 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444444444444444444333
No 3
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=91.72 E-value=1.8 Score=36.16 Aligned_cols=81 Identities=14% Similarity=0.300 Sum_probs=66.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCChHH
Q psy1302 15 TEEIRGNYSTLEQEVQAKNKKLQKIYS---KYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIE-NFIPIEE 90 (225)
Q Consensus 15 ~~~le~~yssLQeEve~KtkkLkKl~~---kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId-~FIP~ee 90 (225)
...+...|.+++.++..-.+.|+.|.. -...++.+|.+++.++....+++...+..+...-.|...|.. .+-=+..
T Consensus 22 ~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~~akakn~~a 101 (155)
T PF06810_consen 22 VDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALKGAKAKNPKA 101 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 345577888888889888999998888 688899999999999999999999999999999999998877 4444444
Q ss_pred HHHHH
Q psy1302 91 LKRLE 95 (225)
Q Consensus 91 ~~kI~ 95 (225)
+..+.
T Consensus 102 v~all 106 (155)
T PF06810_consen 102 VKALL 106 (155)
T ss_pred HHHhc
Confidence 44443
No 4
>PRK11637 AmiB activator; Provisional
Probab=91.28 E-value=2.7 Score=39.95 Aligned_cols=54 Identities=13% Similarity=0.317 Sum_probs=24.7
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDE 56 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E 56 (225)
++++++.+.+.+...++..-++++.+++...++|..+..++..++.+|.+++.+
T Consensus 51 ~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~e 104 (428)
T PRK11637 51 SIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQ 104 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445444444444444444444444444444444444444444444444433
No 5
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.96 E-value=1.4 Score=40.52 Aligned_cols=86 Identities=23% Similarity=0.331 Sum_probs=45.7
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhc
Q psy1302 19 RGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRL 98 (225)
Q Consensus 19 e~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~ee~~kI~~~a 98 (225)
.....++..+++.++++|..+..+++.++.+|.++. .++.+++..|.++.+.+.-+ .=.-..++.+++...
T Consensus 215 r~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~----~~k~~l~~eI~e~~~~~~~~-----r~~t~~Ev~~Lk~~~ 285 (325)
T PF08317_consen 215 RQELAEQKEEIEAKKKELAELQEELEELEEKIEELE----EQKQELLAEIAEAEKIREEC-----RGWTRSEVKRLKAKV 285 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHH
Confidence 333444444444444444444444444444443332 34455555555555544322 112456788888877
Q ss_pred cccccCCccccCCCC
Q psy1302 99 VYDEESSQWNIVPET 113 (225)
Q Consensus 99 ~wdEe~~~W~l~~~~ 113 (225)
..=+..--|.+-.+.
T Consensus 286 ~~Le~~~gw~~~~~~ 300 (325)
T PF08317_consen 286 DALEKLTGWKIVSIS 300 (325)
T ss_pred HHHHHHHCcEEEEEe
Confidence 777777778876554
No 6
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.45 E-value=4.6 Score=36.25 Aligned_cols=65 Identities=14% Similarity=0.339 Sum_probs=44.5
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 16 EEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKL 80 (225)
Q Consensus 16 ~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~l 80 (225)
..+......+.-.+......|.++..+...++..|.+++..|..++.++...|..+..+|.-...
T Consensus 212 ~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~ 276 (312)
T PF00038_consen 212 ESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELRE 276 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 33333334444444444555556667777788888888899999999988888888888765443
No 7
>KOG0243|consensus
Probab=89.43 E-value=4.7 Score=42.99 Aligned_cols=83 Identities=13% Similarity=0.305 Sum_probs=61.5
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLI 81 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lI 81 (225)
.++..+++..+....++.+.|.+.++.-...++++.++..+|+....|+.+++++|+.-...|-..+.-..+..+.-.-|
T Consensus 451 eele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l 530 (1041)
T KOG0243|consen 451 EELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKL 530 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666777777778877777777888899999999999999999999998877666666666555555555555
Q ss_pred HHh
Q psy1302 82 IEN 84 (225)
Q Consensus 82 Id~ 84 (225)
.+.
T Consensus 531 ~~~ 533 (1041)
T KOG0243|consen 531 VDR 533 (1041)
T ss_pred HHH
Confidence 544
No 8
>PRK10780 periplasmic chaperone; Provisional
Probab=89.33 E-value=6.1 Score=32.78 Aligned_cols=75 Identities=15% Similarity=0.296 Sum_probs=48.3
Q ss_pred HHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 9 DKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEE------------VKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 9 e~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~------------~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
.+-......++..|+..+.|++.+.+.|+++..+|+. .+.||...+.+|++..+.+.+.+. .|+-.
T Consensus 39 p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~q~~~~~~qq~~~--~~~~e 116 (165)
T PRK10780 39 PQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTFSQKAQAFEQDRR--RRSNE 116 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 3334445678888999999999999999888888843 356666666677766665554433 23333
Q ss_pred HHHHHHHhc
Q psy1302 77 LRKLIIENF 85 (225)
Q Consensus 77 Lk~lIId~F 85 (225)
+..-|+..+
T Consensus 117 ~~~~i~~ki 125 (165)
T PRK10780 117 ERNKILTRI 125 (165)
T ss_pred HHHHHHHHH
Confidence 444444443
No 9
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.20 E-value=8.4 Score=32.19 Aligned_cols=39 Identities=13% Similarity=0.422 Sum_probs=18.6
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1302 16 EEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM 54 (225)
Q Consensus 16 ~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq 54 (225)
..+++.+..++++......++..+...++....|+.|++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 112 EKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444455555555555555555555
No 10
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.18 E-value=3.4 Score=41.42 Aligned_cols=76 Identities=18% Similarity=0.298 Sum_probs=54.2
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRK 79 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~ 79 (225)
+..++++.+.+..+++.....+.+++......++.+..++..++.++...-..+..+|+++...+.++..++.=..
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~ 282 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANR 282 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666667777777777777777777777777777777777777777777888888888877777665433
No 11
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=88.82 E-value=2.4 Score=39.23 Aligned_cols=90 Identities=21% Similarity=0.359 Sum_probs=49.8
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q psy1302 15 TEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPIEELKRL 94 (225)
Q Consensus 15 ~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~ee~~kI 94 (225)
...+.++...+..++..+.+++..+...++.+...|++.. .++.+++..|+++++.+.=+ .=.-..|+.+|
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~----~~k~e~~~~I~~ae~~~~~~-----r~~t~~Ei~~L 276 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLT----NKKSELNTEIAEAEKKLEQC-----RGFTFKEIEKL 276 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhc-----CCCCHHHHHHH
Confidence 3344445555555555555555555555555555554433 34556666666666633221 12334577777
Q ss_pred HHhccccccCCccccCCCC
Q psy1302 95 EQRLVYDEESSQWNIVPET 113 (225)
Q Consensus 95 ~~~a~wdEe~~~W~l~~~~ 113 (225)
+.....=+..--|.+..+.
T Consensus 277 k~~~~~Le~l~g~~~~~~~ 295 (312)
T smart00787 277 KEQLKLLQSLTGWKITKLS 295 (312)
T ss_pred HHHHHHHHHHhCCeeEecc
Confidence 7777776777777776654
No 12
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=87.56 E-value=7.9 Score=34.74 Aligned_cols=81 Identities=15% Similarity=0.336 Sum_probs=60.4
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN---RDRRDLEQSQDELLKDLKLR 78 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~---~ERedll~tir~l~relkLk 78 (225)
+.+.+.+..--.+.-.++-..++++.+++..+.++.......+.++.+|..+..+.. ..|-+|...|..|..+|.++
T Consensus 57 ~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl 136 (312)
T PF00038_consen 57 RELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFL 136 (312)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHH
Confidence 345666666666777777888888888888888888888888888888877775443 45677888888888888876
Q ss_pred HHHH
Q psy1302 79 KLII 82 (225)
Q Consensus 79 ~lII 82 (225)
..+-
T Consensus 137 ~~~h 140 (312)
T PF00038_consen 137 KQNH 140 (312)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 6553
No 13
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=87.09 E-value=5.8 Score=34.03 Aligned_cols=87 Identities=24% Similarity=0.437 Sum_probs=48.4
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CChHHHHHH
Q psy1302 17 EIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENF--IPIEELKRL 94 (225)
Q Consensus 17 ~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~F--IP~ee~~kI 94 (225)
.++.....|+.+++....++..+..++..++.+-.+- .+|..++..+.+|.++++-+..=+..| .-|+.++++
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-----~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~ 140 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-----EEREELLEELEELKKELKELKKELEKYSENDPEKIEKL 140 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3444455555555555555555555555554433332 678888888888888887666555532 334444443
Q ss_pred H-HhccccccCCccc
Q psy1302 95 E-QRLVYDEESSQWN 108 (225)
Q Consensus 95 ~-~~a~wdEe~~~W~ 108 (225)
+ ....+-+..+.|.
T Consensus 141 ~~~~~~~~~~anrwT 155 (188)
T PF03962_consen 141 KEEIKIAKEAANRWT 155 (188)
T ss_pred HHHHHHHHHHHHHHH
Confidence 3 3344445555554
No 14
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=86.95 E-value=20 Score=31.60 Aligned_cols=56 Identities=13% Similarity=0.336 Sum_probs=47.9
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN 58 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~ 58 (225)
+.++++..-.+++..+...|..|..|++..+...+++...+.+.+.+|.+++.+-.
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788899999999999999999999999999999999999998876544
No 15
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.59 E-value=11 Score=30.27 Aligned_cols=60 Identities=20% Similarity=0.356 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 24 TLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN-------RDRRDLEQSQDELLKDLKLRKLIIE 83 (225)
Q Consensus 24 sLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~-------~ERedll~tir~l~relkLk~lIId 83 (225)
.+.+++......+..|......++..+......+. .+..++...+.+|..+-+|+.-=|+
T Consensus 63 ~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 63 QLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444455555555555554444444 4444555555555555555554443
No 16
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.24 E-value=11 Score=30.52 Aligned_cols=46 Identities=9% Similarity=0.362 Sum_probs=17.1
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1302 16 EEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR 61 (225)
Q Consensus 16 ~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ER 61 (225)
..+...+..|++.++.+.+++..+..+..+++.++..++.-+..++
T Consensus 69 ~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~k 114 (151)
T PF11559_consen 69 ERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEK 114 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333
No 17
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.06 E-value=16 Score=31.98 Aligned_cols=21 Identities=5% Similarity=0.354 Sum_probs=10.2
Q ss_pred HHHHHHHHhHhhHHHHHhhcC
Q psy1302 3 EMKQELDKKEESTEEIRGNYS 23 (225)
Q Consensus 3 el~qele~~Eee~~~le~~ys 23 (225)
++++++++-.++..++...++
T Consensus 97 ~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 345555555544444444433
No 18
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=85.82 E-value=2 Score=42.02 Aligned_cols=38 Identities=13% Similarity=0.250 Sum_probs=17.2
Q ss_pred HHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Q psy1302 7 ELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYE 44 (225)
Q Consensus 7 ele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~ 44 (225)
.|.+++....++++++..|+.|++...++++++.++++
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIk 107 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIE 107 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34444444455555555555444444444444333333
No 19
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=85.33 E-value=8.5 Score=33.65 Aligned_cols=69 Identities=17% Similarity=0.337 Sum_probs=54.3
Q ss_pred hhHHHHHhhcCCHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 13 ESTEEIRGNYSTLE----QEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLI 81 (225)
Q Consensus 13 ee~~~le~~yssLQ----eEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lI 81 (225)
.+..++..+.++|. +++..|-+.+.++..++-.+.--..+++.+++.|+--++.-|++|.++|-..+.+
T Consensus 82 ~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~~~r~~e~~~YesRI~dLE~~L~~~n~~ 154 (196)
T PF15272_consen 82 KQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQNERERERIAYESRIADLERQLNSRNNS 154 (196)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33444444554444 4557788899999999999999999999999999999999999999988765544
No 20
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=84.94 E-value=11 Score=38.19 Aligned_cols=79 Identities=22% Similarity=0.382 Sum_probs=57.6
Q ss_pred HHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1302 6 QELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENF 85 (225)
Q Consensus 6 qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~F 85 (225)
..+...++....++..-++|+-+++.+.+.+.+|.+++..++.++. ...--.++-+.+...|..|+++|.=+.--++..
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L 500 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-DKVRKDREIRARDRRIERLEKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566667777777777788888888888888888887777 444455667788889999999988777666543
No 21
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.44 E-value=15 Score=30.66 Aligned_cols=54 Identities=17% Similarity=0.388 Sum_probs=24.1
Q ss_pred HHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1302 8 LDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR 61 (225)
Q Consensus 8 le~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ER 61 (225)
+.+-++...+....+..+++........++....+++.++..+.++..+|..=+
T Consensus 97 l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 97 LDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333344444455555555555555555554433
No 22
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=84.38 E-value=17 Score=29.54 Aligned_cols=66 Identities=15% Similarity=0.355 Sum_probs=32.4
Q ss_pred HhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 10 KKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDL 75 (225)
Q Consensus 10 ~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~rel 75 (225)
.-++....++....+++......+++++.+..+++..+.|+.-+..-.+.-+..+.-.+|.-++|+
T Consensus 77 rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~ 142 (151)
T PF11559_consen 77 RLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREI 142 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444555555555555555555555555555544444444444444443
No 23
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=84.21 E-value=17 Score=29.16 Aligned_cols=63 Identities=19% Similarity=0.389 Sum_probs=34.3
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLE 65 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll 65 (225)
.++..+..+-....+.+.+|..=-.--..-.+.|..+...+..++.+|..+..+-..-+..|.
T Consensus 28 ~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~ 90 (132)
T PF07926_consen 28 SLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELE 90 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666677777775321111222455556666666666666666555555444443
No 24
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=84.17 E-value=12 Score=30.99 Aligned_cols=86 Identities=17% Similarity=0.351 Sum_probs=40.8
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHh
Q psy1302 18 IRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQR 97 (225)
Q Consensus 18 le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~ee~~kI~~~ 97 (225)
+...-..|++++......++.|...|..+.+.... ++-......|...+..+...|.-... =...|+++++++|..
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~--~el~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~- 152 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTN--EELREEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEK- 152 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHH-
Confidence 33334444444444444444444444444433311 22334444555555555555554333 233478888888874
Q ss_pred ccccccCCccc
Q psy1302 98 LVYDEESSQWN 108 (225)
Q Consensus 98 a~wdEe~~~W~ 108 (225)
.|..-...|.
T Consensus 153 -~~~~~~k~w~ 162 (169)
T PF07106_consen 153 -EYKKWRKEWK 162 (169)
T ss_pred -HHHHHHHHHH
Confidence 3443444443
No 25
>KOG0250|consensus
Probab=84.06 E-value=7 Score=41.77 Aligned_cols=67 Identities=19% Similarity=0.293 Sum_probs=49.8
Q ss_pred hhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy1302 13 ESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN---RDRRDLEQSQDELLKDLKLRK 79 (225)
Q Consensus 13 ee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~---~ERedll~tir~l~relkLk~ 79 (225)
.+..+++.++..|+.||+.....+..|..+++.++.++.+.+++.. .++-++--.|+..+.+|+-..
T Consensus 394 ~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 394 SELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLK 463 (1074)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788899999999999988999999999999999988888873 344455555555555555433
No 26
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=84.04 E-value=23 Score=31.03 Aligned_cols=45 Identities=20% Similarity=0.431 Sum_probs=21.1
Q ss_pred HHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1302 5 KQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQD 49 (225)
Q Consensus 5 ~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~E 49 (225)
+.++...+.....+...-..++++++.+++++.++...+...+..
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~ 106 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555555555555555544444444433
No 27
>KOG1962|consensus
Probab=83.85 E-value=4.9 Score=35.62 Aligned_cols=54 Identities=28% Similarity=0.512 Sum_probs=44.5
Q ss_pred HhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy1302 12 EESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLE 65 (225)
Q Consensus 12 Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll 65 (225)
+++...+.+.-..|++|++.+.++|+++..+..+++...++++.||.|=-+|..
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~ 203 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYS 203 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 445566677778899999999999999999999999999999999987666543
No 28
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=83.82 E-value=13 Score=29.33 Aligned_cols=62 Identities=19% Similarity=0.339 Sum_probs=51.7
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 15 TEEIRGNYSTLEQEVQAKNKKLQKIYS------KYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 15 ~~~le~~yssLQeEve~KtkkLkKl~~------kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
..+..+.|...+.+.+....+++++.. ++..+..++...+..|+.-+.++...+..+.....
T Consensus 96 ~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~~~~ 163 (194)
T cd07307 96 IKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIEDLNKLEEKRK 163 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677888888888888888888765 68899999999999999999999999888876655
No 29
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=83.60 E-value=25 Score=29.35 Aligned_cols=68 Identities=16% Similarity=0.337 Sum_probs=57.9
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDE 70 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~ 70 (225)
.+..+++++..+...+..+|.+.-+-+....+|+.-+...+..++.+|.+.+.....=|+++...-.+
T Consensus 53 ~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~ 120 (177)
T PF13870_consen 53 QLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKE 120 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999888888999999999999999999999999988888877777654433
No 30
>PHA02562 46 endonuclease subunit; Provisional
Probab=83.27 E-value=18 Score=34.97 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCh
Q psy1302 67 SQDELLKDLKLRKLIIENFIPI 88 (225)
Q Consensus 67 tir~l~relkLk~lIId~FIP~ 88 (225)
.++.+-+...++..|++.|+|.
T Consensus 407 ~i~~~~~~~g~~~~i~~~~l~~ 428 (562)
T PHA02562 407 IVTDLLKDSGIKASIIKKYIPY 428 (562)
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 3444444455666677777764
No 31
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=83.06 E-value=16 Score=29.99 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=7.5
Q ss_pred HHHHhhcCCHHHHHHHHHHHH
Q psy1302 16 EEIRGNYSTLEQEVQAKNKKL 36 (225)
Q Consensus 16 ~~le~~yssLQeEve~KtkkL 36 (225)
..+..+.+.|..+|+....+|
T Consensus 38 ~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 38 TSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 32
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=82.91 E-value=29 Score=33.28 Aligned_cols=75 Identities=12% Similarity=0.276 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhccccccCCccccC
Q psy1302 35 KLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIV 110 (225)
Q Consensus 35 kLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~ee~~kI~~~a~wdEe~~~W~l~ 110 (225)
.++.+..++..++.++..++.+.. .--+....++.|.|+......+.+.|.-.-+..++.....=......|.+=
T Consensus 325 ~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~~~~~~~~~~~~i~vi 399 (498)
T TIGR03007 325 EIASLEARVAELTARIERLESLLR-TIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVSKQMEVQDKAVSFRII 399 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCceEEEe
Confidence 333334444444444444444433 233567788999999999999999998877777776554433445667773
No 33
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.82 E-value=12 Score=40.86 Aligned_cols=82 Identities=18% Similarity=0.261 Sum_probs=63.3
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLI 81 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lI 81 (225)
.+++.++...+.+...+...+.+++.+.+.+.++|+.|..++..+..+-..+..... .|.++...+.++..++.-...-
T Consensus 825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~-~r~~le~~L~el~~el~~l~~~ 903 (1311)
T TIGR00606 825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ-RRQQFEEQLVELSTEVQSLIRE 903 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888999888888888887777777777777777665 7788888888887777655544
Q ss_pred HHh
Q psy1302 82 IEN 84 (225)
Q Consensus 82 Id~ 84 (225)
|..
T Consensus 904 ~~~ 906 (1311)
T TIGR00606 904 IKD 906 (1311)
T ss_pred HHH
Confidence 433
No 34
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=82.77 E-value=16 Score=32.88 Aligned_cols=56 Identities=21% Similarity=0.369 Sum_probs=43.2
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVK--QDIQDIMDEFNR 59 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k--~Ei~Dlq~E~~~ 59 (225)
+...+...+.+..+++..++-++.++...++++++...++.+++ .|+.+|+.|++.
T Consensus 43 ~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ 100 (239)
T COG1579 43 LNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQI 100 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 44566777778888888888888888888888888888887665 567777766653
No 35
>PRK14143 heat shock protein GrpE; Provisional
Probab=82.76 E-value=9.4 Score=34.20 Aligned_cols=44 Identities=25% Similarity=0.502 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy1302 23 STLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQ 66 (225)
Q Consensus 23 ssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~ 66 (225)
..|+++++...++++.++.+|.-+.+|+.....-..+|++++..
T Consensus 70 ~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~ 113 (238)
T PRK14143 70 AQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRL 113 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666677777777777777777777777777766543
No 36
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=82.73 E-value=16 Score=26.73 Aligned_cols=67 Identities=18% Similarity=0.366 Sum_probs=41.2
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLK 73 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~r 73 (225)
.+...|.++++....+.+.=..|.-..-..+..+|||..+.+.....|.++... .+++...+..|..
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~----~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKK----LEELEKELESLEE 68 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 466788888888777665555554444445666777777777777777766643 3344444444443
No 37
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=82.71 E-value=16 Score=29.73 Aligned_cols=65 Identities=25% Similarity=0.462 Sum_probs=42.4
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1302 21 NYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM---------DEFNRDRRDLEQSQDELLKDLKLRKLIIENF 85 (225)
Q Consensus 21 ~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq---------~E~~~ERedll~tir~l~relkLk~lIId~F 85 (225)
.|...++..+...+.|.++...+.++..-+..+. ++|..=--.+-+-...|+++++=+..||++|
T Consensus 46 r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L~k~I~~~e~iI~~f 119 (126)
T PF09403_consen 46 RYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKLDKEIAEQEQIIDNF 119 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555566565555555555444443 4566666677777888888888888899887
No 38
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.47 E-value=13 Score=34.00 Aligned_cols=58 Identities=16% Similarity=0.362 Sum_probs=22.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHH
Q psy1302 15 TEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMD---EFNRDRRDLEQSQDELL 72 (225)
Q Consensus 15 ~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~---E~~~ERedll~tir~l~ 72 (225)
.-+++..-.++|.+|+.+-.++.++..+.+.++.+|..++. +++.+..++.++|++..
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333332 12333444444444433
No 39
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=82.29 E-value=8.5 Score=35.63 Aligned_cols=41 Identities=20% Similarity=0.404 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy1302 23 STLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRD 63 (225)
Q Consensus 23 ssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERed 63 (225)
++|.-+|+..+.+|..+..-|-+++.|+.+...+|++.+..
T Consensus 108 ~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~ 148 (302)
T PF09738_consen 108 SALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRA 148 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888888888888888888777664
No 40
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.61 E-value=21 Score=31.15 Aligned_cols=26 Identities=4% Similarity=0.226 Sum_probs=14.6
Q ss_pred HHHHHHhHhhHHHHHhhcCCHHHHHH
Q psy1302 5 KQELDKKEESTEEIRGNYSTLEQEVQ 30 (225)
Q Consensus 5 ~qele~~Eee~~~le~~yssLQeEve 30 (225)
...+.+.+.+..+++.+.+++.++.+
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34455555666666666666655543
No 41
>PHA02562 46 endonuclease subunit; Provisional
Probab=81.29 E-value=8 Score=37.38 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=37.8
Q ss_pred hHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 14 STEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN----------RDRRDLEQSQDELLKDLKLRKLIIE 83 (225)
Q Consensus 14 e~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~----------~ERedll~tir~l~relkLk~lIId 83 (225)
....+..+++.+.+++...+..+..+..+...++.+|..++.++. .+..++...+.++.++......|-+
T Consensus 331 ~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~ 410 (562)
T PHA02562 331 EFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTD 410 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444555544443322 2444556666777777777666655
Q ss_pred hcCCh
Q psy1302 84 NFIPI 88 (225)
Q Consensus 84 ~FIP~ 88 (225)
.|--+
T Consensus 411 ~~~~~ 415 (562)
T PHA02562 411 LLKDS 415 (562)
T ss_pred HHHhh
Confidence 54433
No 42
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=81.20 E-value=15 Score=29.54 Aligned_cols=69 Identities=25% Similarity=0.419 Sum_probs=49.1
Q ss_pred hhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 13 ESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVK-----QDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLI 81 (225)
Q Consensus 13 ee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k-----~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lI 81 (225)
.....+++.+...+.+++.+.+.|+++..+|+... .+....+.+++....+|......+.+++.....-
T Consensus 36 ~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~ 109 (158)
T PF03938_consen 36 DAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQLQQEEQE 109 (158)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777778888888888888888888777642 4566677777777777777777777776665544
No 43
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=80.92 E-value=35 Score=29.83 Aligned_cols=9 Identities=33% Similarity=0.383 Sum_probs=4.3
Q ss_pred CCccccCCC
Q psy1302 104 SSQWNIVPE 112 (225)
Q Consensus 104 ~~~W~l~~~ 112 (225)
...|.|-++
T Consensus 173 ~~~~~I~~~ 181 (302)
T PF10186_consen 173 SSEYTICGL 181 (302)
T ss_pred CCCeeecCc
Confidence 445555443
No 44
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=80.40 E-value=20 Score=26.27 Aligned_cols=48 Identities=10% Similarity=0.242 Sum_probs=27.7
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy1302 16 EEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRD 63 (225)
Q Consensus 16 ~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERed 63 (225)
..++.+|+++-+.+.....++..|..+..+++.+...|..+.++-+++
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666666666655555544433
No 45
>PRK14160 heat shock protein GrpE; Provisional
Probab=80.25 E-value=18 Score=31.88 Aligned_cols=17 Identities=18% Similarity=0.620 Sum_probs=9.9
Q ss_pred HHHHhcCCh-HHHHHHHH
Q psy1302 80 LIIENFIPI-EELKRLEQ 96 (225)
Q Consensus 80 lIId~FIP~-ee~~kI~~ 96 (225)
.++..|+|. +.+++...
T Consensus 112 ~~~~~LLpVlDnLerAl~ 129 (211)
T PRK14160 112 DVLKELLPVLDNLERAAA 129 (211)
T ss_pred HHHHHHhhHHhHHHHHHh
Confidence 445666664 56666654
No 46
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=80.14 E-value=20 Score=38.63 Aligned_cols=82 Identities=28% Similarity=0.484 Sum_probs=57.5
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMD---EFNRDRRDLEQSQDELLKDLKLRKL 80 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~---E~~~ERedll~tir~l~relkLk~l 80 (225)
+.++++..+++..+++++..++..++...+.++..+...+..++.++.++.. .+..++.++...++++...+.-...
T Consensus 826 ~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~ 905 (1163)
T COG1196 826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE 905 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777888888888888887777777777777777666655554 4556667777777777776665555
Q ss_pred HHHhc
Q psy1302 81 IIENF 85 (225)
Q Consensus 81 IId~F 85 (225)
-+..+
T Consensus 906 ~~~~~ 910 (1163)
T COG1196 906 EIEKL 910 (1163)
T ss_pred HHHHH
Confidence 44444
No 47
>PRK03918 chromosome segregation protein; Provisional
Probab=79.68 E-value=20 Score=36.63 Aligned_cols=40 Identities=25% Similarity=0.525 Sum_probs=20.0
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy1302 16 EEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMD 55 (225)
Q Consensus 16 ~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~ 55 (225)
..++..|..+..++...+..+..+...+..++.+|.++..
T Consensus 662 ~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~ 701 (880)
T PRK03918 662 EELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE 701 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444455555555555555555555543
No 48
>PRK14161 heat shock protein GrpE; Provisional
Probab=79.60 E-value=12 Score=32.05 Aligned_cols=80 Identities=11% Similarity=0.241 Sum_probs=57.8
Q ss_pred HHhHhhH-HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy1302 9 DKKEEST-EEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIP 87 (225)
Q Consensus 9 e~~Eee~-~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP 87 (225)
+-.|++. .-+++-..+++++++...+++..++.+|.-+.+|+.....-..+|+++....- ..-++..|+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a---------~~~~~~~LLp 77 (178)
T PRK14161 7 ENNEQTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYA---------IATFAKELLN 77 (178)
T ss_pred cccHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhh
Confidence 3344554 34567789999999999999999999999999999999999998888765432 1234455555
Q ss_pred h-HHHHHHHHh
Q psy1302 88 I-EELKRLEQR 97 (225)
Q Consensus 88 ~-ee~~kI~~~ 97 (225)
. +.+++....
T Consensus 78 v~DnlerAl~~ 88 (178)
T PRK14161 78 VSDNLSRALAH 88 (178)
T ss_pred HHhHHHHHHhc
Confidence 3 566665543
No 49
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=78.65 E-value=25 Score=26.19 Aligned_cols=53 Identities=30% Similarity=0.511 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1302 32 KNKKLQKIYSKYEEVKQDIQDIMDEFN--------RDRRDLEQSQDELLKDLKLRKLIIEN 84 (225)
Q Consensus 32 KtkkLkKl~~kl~~~k~Ei~Dlq~E~~--------~ERedll~tir~l~relkLk~lIId~ 84 (225)
....|+-|+..+...+.|...++++|. +.|.+|...++.|-+.+..|.--|..
T Consensus 15 Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~ 75 (79)
T PF06657_consen 15 LSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666665554 79999999999999999988776654
No 50
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=78.07 E-value=19 Score=34.23 Aligned_cols=64 Identities=20% Similarity=0.383 Sum_probs=46.2
Q ss_pred hHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 14 STEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQ-----DIMDEFNRDRRDLEQSQDELLKDLKLR 78 (225)
Q Consensus 14 e~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~-----Dlq~E~~~ERedll~tir~l~relkLk 78 (225)
+...+-+.|+.|++ +-.+-++++++...+..++.-+. |+.+..+.|..++...+..|+.+|+.+
T Consensus 34 ~~~~lske~a~l~~-iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 34 EYRKLSKEYAELEP-IVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566777765 44556667777777777776665 567778888889999999999988875
No 51
>PRK14148 heat shock protein GrpE; Provisional
Probab=77.88 E-value=18 Score=31.53 Aligned_cols=70 Identities=9% Similarity=0.233 Sum_probs=45.4
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHh
Q psy1302 19 RGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIP-IEELKRLEQR 97 (225)
Q Consensus 19 e~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP-~ee~~kI~~~ 97 (225)
+....+|+++++....+++.++.+|.-+.+|+.....-.++|++++...- .. -++..++| .+.+++....
T Consensus 39 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a--------~~-~~~~~LLpV~DnlerAl~~ 109 (195)
T PRK14148 39 EEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFG--------IE-KFAKELLPVIDSIEQALKH 109 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH-HHHHHHhhHHhHHHHHHhc
Confidence 34466677777777777777888888888888888887777777664432 22 23344444 3566666543
No 52
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=77.86 E-value=6.4 Score=37.21 Aligned_cols=50 Identities=22% Similarity=0.447 Sum_probs=31.1
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDI 53 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dl 53 (225)
+.++.....++..+++++|..+++-|..+|+.|..+-..|.++|++|++-
T Consensus 271 l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 271 LIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555666666666666666666666666666666666666654
No 53
>KOG0161|consensus
Probab=77.70 E-value=17 Score=41.37 Aligned_cols=82 Identities=26% Similarity=0.382 Sum_probs=53.3
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQ-------KIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKD 74 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLk-------Kl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~re 74 (225)
+++..+++..++....++.+...+++++....+.+. |+...+..+..+|.+++++-+. +.+.+..|.|+
T Consensus 911 ~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~----~~e~~~kL~ke 986 (1930)
T KOG0161|consen 911 KELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS----LDENISKLSKE 986 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 455666666666667777777777777777666665 5666666666666666666554 66666777777
Q ss_pred HHHHHHHHHhcCC
Q psy1302 75 LKLRKLIIENFIP 87 (225)
Q Consensus 75 lkLk~lIId~FIP 87 (225)
-|+...-+....-
T Consensus 987 kk~lEe~~~~l~~ 999 (1930)
T KOG0161|consen 987 KKELEERIRELQD 999 (1930)
T ss_pred HHHHHHHHHHHHH
Confidence 7766666555443
No 54
>PRK02224 chromosome segregation protein; Provisional
Probab=77.46 E-value=29 Score=35.70 Aligned_cols=54 Identities=24% Similarity=0.515 Sum_probs=35.9
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEF 57 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~ 57 (225)
+..++...+.....++..++++..+++....+++.+...+..++.++.++....
T Consensus 347 ~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l 400 (880)
T PRK02224 347 LREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERF 400 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666677777777777777777777777777777777664433
No 55
>PRK14163 heat shock protein GrpE; Provisional
Probab=77.16 E-value=20 Score=31.65 Aligned_cols=45 Identities=13% Similarity=0.250 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy1302 23 STLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQS 67 (225)
Q Consensus 23 ssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~t 67 (225)
..|+++++...++++.++.+|.-+.+|+.....-..+|++++...
T Consensus 43 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~ 87 (214)
T PRK14163 43 AGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEI 87 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777888888888888888888999998888888888876543
No 56
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=77.11 E-value=32 Score=31.32 Aligned_cols=56 Identities=18% Similarity=0.314 Sum_probs=37.9
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHH------------------HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1302 15 TEEIRGNYSTLEQEVQAKNKKLQKIYSKY------------------EEVKQDIQDIMDEFNRDRRDLEQSQDE 70 (225)
Q Consensus 15 ~~~le~~yssLQeEve~KtkkLkKl~~kl------------------~~~k~Ei~Dlq~E~~~ERedll~tir~ 70 (225)
....+.+-++||++|+....+|+|....+ -++...|+.+.++++.|..+|..-++.
T Consensus 76 eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~ 149 (258)
T PF15397_consen 76 EEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQM 149 (258)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677889999999988888866533 344566666666666666666555443
No 57
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.65 E-value=29 Score=31.75 Aligned_cols=32 Identities=6% Similarity=0.352 Sum_probs=12.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1302 23 STLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM 54 (225)
Q Consensus 23 ssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq 54 (225)
.+++.+++.+.+++.++...++.++.+|.++.
T Consensus 62 ~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 62 EEIQSKIDELQKEIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444444444433
No 58
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=76.65 E-value=40 Score=27.64 Aligned_cols=9 Identities=22% Similarity=0.416 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q psy1302 70 ELLKDLKLR 78 (225)
Q Consensus 70 ~l~relkLk 78 (225)
.|+|.+.+.
T Consensus 77 ~l~rriq~L 85 (143)
T PF12718_consen 77 QLNRRIQLL 85 (143)
T ss_pred HHHhhHHHH
Confidence 444444443
No 59
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=76.55 E-value=30 Score=33.26 Aligned_cols=74 Identities=19% Similarity=0.315 Sum_probs=59.7
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQ----EVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQe----Eve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
.+..+|.+..+....++..|..|+. ++...+..|..-.-++..++..+.|+-+=|+.|...|-+.+....-.+.
T Consensus 216 ~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~ 293 (395)
T PF10267_consen 216 KILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMA 293 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4667777777788888888888777 6667777787778888999999999999999999999888877665443
No 60
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=76.53 E-value=16 Score=36.59 Aligned_cols=75 Identities=16% Similarity=0.353 Sum_probs=48.3
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
.++.+++...+.+...+.....+++.+++...+++..+...+...-..+.+-..+...++..+.....+..++++
T Consensus 212 ~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~ 286 (650)
T TIGR03185 212 EALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLR 286 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777777777777766655555555445555555555555555555443
No 61
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=76.18 E-value=23 Score=32.73 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=17.0
Q ss_pred hHHHHHHHHhccccccCCccccCCCC
Q psy1302 88 IEELKRLEQRLVYDEESSQWNIVPET 113 (225)
Q Consensus 88 ~ee~~kI~~~a~wdEe~~~W~l~~~~ 113 (225)
...++++++.-.||+-=.-|.-.++.
T Consensus 126 ~~~L~~L~ktNv~n~~F~I~hdG~fG 151 (314)
T PF04111_consen 126 SNQLDRLRKTNVYNDTFHIWHDGPFG 151 (314)
T ss_dssp HHHHHCHHT--TTTTT--EEEETTEE
T ss_pred HHHHHHHHhcCchhceeeEeecCCee
Confidence 45788999999999988888875443
No 62
>PRK11020 hypothetical protein; Provisional
Probab=75.88 E-value=13 Score=29.90 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 24 TLEQEVQAKNKKLQKIYSKYEEVK-QDIQDIMDEFNRDRRDLEQSQDEL 71 (225)
Q Consensus 24 sLQeEve~KtkkLkKl~~kl~~~k-~Ei~Dlq~E~~~ERedll~tir~l 71 (225)
++++|+.....+|.++..|+.++. ..=.++-.+|..|.+.|...|..+
T Consensus 2 ~~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~l 50 (118)
T PRK11020 2 VEKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARL 50 (118)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999987 566778889998888888777655
No 63
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=75.85 E-value=23 Score=30.64 Aligned_cols=65 Identities=12% Similarity=0.283 Sum_probs=48.3
Q ss_pred hHHHHHhhcCCHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 14 STEEIRGNYSTLEQEVQAKNKKLQKI-------YSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLR 78 (225)
Q Consensus 14 e~~~le~~yssLQeEve~KtkkLkKl-------~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk 78 (225)
.+..+-..|.+++.++..++.++.|| ..|+..++.||..++...+.-+.++...-....+|+.-.
T Consensus 109 ~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF 180 (216)
T cd07627 109 QRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERF 180 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778899999999999888888 468888889988888777776666666555555555443
No 64
>KOG0288|consensus
Probab=75.84 E-value=35 Score=33.27 Aligned_cols=63 Identities=13% Similarity=0.118 Sum_probs=47.9
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQ 66 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~ 66 (225)
..+.+...+.+..+-++.|+-+-.+.....-.-+-+.++|+..+.||.+||+|...-+++.-.
T Consensus 11 ~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 11 NDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667777778888877777777777788889999999999999988766666544
No 65
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=75.72 E-value=31 Score=35.95 Aligned_cols=10 Identities=40% Similarity=0.421 Sum_probs=5.2
Q ss_pred cccccccccc
Q psy1302 191 DEADIDVDVK 200 (225)
Q Consensus 191 ~e~~~~~d~~ 200 (225)
||-+..+|+.
T Consensus 1103 DE~~~~ld~~ 1112 (1164)
T TIGR02169 1103 DEVDMFLDGV 1112 (1164)
T ss_pred cccccccCHH
Confidence 4555555554
No 66
>PRK14162 heat shock protein GrpE; Provisional
Probab=75.37 E-value=23 Score=30.75 Aligned_cols=68 Identities=19% Similarity=0.387 Sum_probs=45.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh-HHHHHHHHh
Q psy1302 21 NYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPI-EELKRLEQR 97 (225)
Q Consensus 21 ~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~-ee~~kI~~~ 97 (225)
....|+++++...+++..+..+|.-+.+|++..+.-+.+|++++...- ..-++..|+|. +++++....
T Consensus 40 e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a---------~~~~~~~LLpV~DnLerAl~~ 108 (194)
T PRK14162 40 PVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYE---------SQSLAKDVLPAMDNLERALAV 108 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhHHhHHHHHHhc
Confidence 345567777777788888888888888888888888888887765432 12334455553 556665543
No 67
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=75.34 E-value=6.3 Score=28.77 Aligned_cols=30 Identities=20% Similarity=0.493 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1302 27 QEVQAKNKKLQKIYSKYEEVKQDIQDIMDE 56 (225)
Q Consensus 27 eEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E 56 (225)
++++...+++|||..+--+++.+++||-++
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDLaEd 31 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDLAED 31 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467888999999999999999999999864
No 68
>PRK11546 zraP zinc resistance protein; Provisional
Probab=75.28 E-value=28 Score=28.98 Aligned_cols=53 Identities=13% Similarity=0.278 Sum_probs=36.2
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy1302 16 EEIRGNYSTLEQEVQAKNKKLQKIYS-------KYEEVKQDIQDIMDEFNRDRRDLEQSQ 68 (225)
Q Consensus 16 ~~le~~yssLQeEve~KtkkLkKl~~-------kl~~~k~Ei~Dlq~E~~~ERedll~ti 68 (225)
.+...+...|.+++-.|+-.|+-|.. ++.++..||.||+.....+|-.+-..+
T Consensus 57 ~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~ 116 (143)
T PRK11546 57 NDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIAM 116 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556677777777777777753 688888888888887776666444333
No 69
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=74.53 E-value=56 Score=28.23 Aligned_cols=29 Identities=21% Similarity=0.428 Sum_probs=19.5
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHhcCC
Q psy1302 59 RDRRDLE----QSQDELLKDLKLRKLIIENFIP 87 (225)
Q Consensus 59 ~ERedll----~tir~l~relkLk~lIId~FIP 87 (225)
+||.+|. ..|.+..+...+++++++.=+-
T Consensus 121 ~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~ 153 (201)
T PF13851_consen 121 QERDELYRKFESAIQEVQQKTGLKNLLLEKKLQ 153 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5676665 4566777777778887765443
No 70
>PRK14153 heat shock protein GrpE; Provisional
Probab=74.32 E-value=38 Score=29.49 Aligned_cols=69 Identities=9% Similarity=0.219 Sum_probs=47.1
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh-HHHHHHHHhc
Q psy1302 21 NYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPI-EELKRLEQRL 98 (225)
Q Consensus 21 ~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~-ee~~kI~~~a 98 (225)
.-..+.++++....++..+..+|.-+.+|++....-..+|++++... .+. -++..|+|. +.+++....+
T Consensus 34 ~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~--------a~~-~~~~~LLpv~DnLerAl~~~ 103 (194)
T PRK14153 34 EDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKF--------VLE-QVLLDLLEVTDNFERALESA 103 (194)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-HHHHHHhhHHhHHHHHHhcc
Confidence 35667777888888888888888888888888888888887765432 222 344555554 5667666543
No 71
>PRK14158 heat shock protein GrpE; Provisional
Probab=74.21 E-value=27 Score=30.36 Aligned_cols=67 Identities=16% Similarity=0.365 Sum_probs=39.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh-HHHHHHHHh
Q psy1302 22 YSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPI-EELKRLEQR 97 (225)
Q Consensus 22 yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~-ee~~kI~~~ 97 (225)
..+|+++++...+++..+..+|.-+.+|+.....-.++|++++... - ..-++..|+|. +.+++....
T Consensus 42 ~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~--------a-~~~~~~~lLpV~DnLerAl~~ 109 (194)
T PRK14158 42 IKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKY--------G-NESLILEILPAVDNMERALDH 109 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H-HHHHHHHHHhHHhHHHHHHhc
Confidence 3455566666666666666666666666666666666666655433 1 22345555664 667776553
No 72
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=74.11 E-value=13 Score=30.82 Aligned_cols=66 Identities=20% Similarity=0.254 Sum_probs=57.2
Q ss_pred hhHHHHHhhcC----CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 13 ESTEEIRGNYS----TLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLR 78 (225)
Q Consensus 13 ee~~~le~~ys----sLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk 78 (225)
++...+.++|+ +...||.+.+..-..+..|+..+++++++.+.|...+--.++..+..+-++|+-.
T Consensus 62 ~dl~tLretfsNFssst~aEvqaL~S~G~sl~~kVtSLea~lEkqqQeLkAdhS~lllhvk~~~~DLr~L 131 (138)
T PF03954_consen 62 RDLRTLRETFSNFSSSTLAEVQALSSQGGSLQDKVTSLEAKLEKQQQELKADHSTLLLHVKQFPKDLRSL 131 (138)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhccccHHhHcccHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Confidence 34456778887 7778899999999999999999999999999999999999999999988887643
No 73
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=73.99 E-value=84 Score=31.50 Aligned_cols=40 Identities=23% Similarity=0.386 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 34 KKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLK 73 (225)
Q Consensus 34 kkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~r 73 (225)
+.+++|+...++.++.|..+..+.+.+++.+...++++.+
T Consensus 219 ~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ 258 (555)
T TIGR03545 219 EEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKK 258 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3555555555555566666666666666666666666554
No 74
>PRK14154 heat shock protein GrpE; Provisional
Probab=73.94 E-value=28 Score=30.60 Aligned_cols=67 Identities=15% Similarity=0.378 Sum_probs=47.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh-HHHHHHHH
Q psy1302 21 NYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPI-EELKRLEQ 96 (225)
Q Consensus 21 ~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~-ee~~kI~~ 96 (225)
.+.+|+++++...+++..+..+|.-+.+|++....-.++|++++...-. .-++..|+|. +.+++...
T Consensus 53 ~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~---------e~~~~~LLpVlDnLeRAL~ 120 (208)
T PRK14154 53 SREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGS---------KQLITDLLPVADSLIHGLE 120 (208)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhHHhHHHHHHh
Confidence 3456778888888888888999999999999999988888887655432 2344455553 55555543
No 75
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=73.93 E-value=41 Score=28.78 Aligned_cols=38 Identities=21% Similarity=0.402 Sum_probs=21.2
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy1302 15 TEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQD 52 (225)
Q Consensus 15 ~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~D 52 (225)
..+++...+.|..+.+..++++..+..++..++.....
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e 159 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEE 159 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666666666665555555544433
No 76
>PRK00106 hypothetical protein; Provisional
Probab=73.62 E-value=34 Score=34.14 Aligned_cols=42 Identities=14% Similarity=0.291 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1302 29 VQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDE 70 (225)
Q Consensus 29 ve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~ 70 (225)
++.+.+.|.+....|...+.++...+.+.+....++...+.+
T Consensus 113 LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~ 154 (535)
T PRK00106 113 LDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQ 154 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443333333
No 77
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=73.52 E-value=35 Score=34.51 Aligned_cols=72 Identities=25% Similarity=0.416 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHh
Q psy1302 26 EQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN---RDRRDLEQSQDELLKDLKLRKLIIENFI-PIEELKRLEQR 97 (225)
Q Consensus 26 QeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~---~ERedll~tir~l~relkLk~lIId~FI-P~ee~~kI~~~ 97 (225)
++|++...+.|..+...+..+..+++++..+.. .+.+.......++.++++++..+++..- |+.++.++...
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~ 402 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQAL 402 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 344444444455555555555555555544332 3455566677788999999999988744 24555555543
No 78
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=73.44 E-value=25 Score=31.37 Aligned_cols=62 Identities=15% Similarity=0.265 Sum_probs=46.2
Q ss_pred hHHHHHhhcCCHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 14 STEEIRGNYSTLEQEVQAKNKKLQKIY-----SKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDL 75 (225)
Q Consensus 14 e~~~le~~yssLQeEve~KtkkLkKl~-----~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~rel 75 (225)
++..+-..|.+++.++..|...+.||. .|+.+++.||.+++.....-+.++.+.-+-..+|+
T Consensus 127 ~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El 193 (234)
T cd07665 127 QRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWESRVTQYERDFERISATVRKEV 193 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788999999999888888884 38999999999888776666666555555444444
No 79
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=73.32 E-value=42 Score=31.61 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH---HHhcCChH
Q psy1302 64 LEQSQDELLKDLKLRKLI---IENFIPIE 89 (225)
Q Consensus 64 ll~tir~l~relkLk~lI---Id~FIP~e 89 (225)
-.+.+.++..+++-.... ++.|.|..
T Consensus 66 ~~~~i~~L~~~Ik~r~~~l~DmEa~LPkk 94 (330)
T PF07851_consen 66 ERELIEKLEEDIKERRCQLFDMEAFLPKK 94 (330)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhCCCC
Confidence 344455555555544322 56777753
No 80
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=72.33 E-value=45 Score=27.57 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=11.4
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQ 30 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve 30 (225)
|..++....++...+...+++|..|+.
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443
No 81
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=71.76 E-value=44 Score=33.29 Aligned_cols=84 Identities=17% Similarity=0.321 Sum_probs=39.9
Q ss_pred ChHHHHHHHHhHhhHHHHHhhcCCHHHHHH----------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1302 1 MIEMKQELDKKEESTEEIRGNYSTLEQEVQ----------AKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDE 70 (225)
Q Consensus 1 ~~el~qele~~Eee~~~le~~yssLQeEve----------~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~ 70 (225)
|.+|+.+++.+|++...+..+-++|.-.|. .....-.+|...|.....++..|..+--...-+....+.+
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~s 411 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKS 411 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHH
Confidence 345666666666666666666666543332 2222222344444444444444444433333334444444
Q ss_pred HHHHHHHHHHHHHh
Q psy1302 71 LLKDLKLRKLIIEN 84 (225)
Q Consensus 71 l~relkLk~lIId~ 84 (225)
|.+-+.-+.-++++
T Consensus 412 lek~~~~~~sl~~~ 425 (622)
T COG5185 412 LEKTLRQYDSLIQN 425 (622)
T ss_pred HHHHHHHHHHHHHH
Confidence 54444444444443
No 82
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=71.75 E-value=37 Score=24.91 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=39.8
Q ss_pred HHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy1302 7 ELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRD 60 (225)
Q Consensus 7 ele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~E 60 (225)
.+++-|.....+-+++..||.|++....+-..|...-..++.|..-+++++..-
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~ 58 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAW 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566677788889999998888888778777777777777777555433
No 83
>KOG0995|consensus
Probab=71.63 E-value=61 Score=32.73 Aligned_cols=86 Identities=16% Similarity=0.254 Sum_probs=48.1
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLI 81 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lI 81 (225)
.++..++.+.+.+.+-+++.++++.--++.++..+..+..+++.+.....-+..+-+.+-..---.+..|.++|....+.
T Consensus 428 ~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~ 507 (581)
T KOG0995|consen 428 DEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLV 507 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777877777766666666655544444444444444444444444444444455555555555555
Q ss_pred HHhcCC
Q psy1302 82 IENFIP 87 (225)
Q Consensus 82 Id~FIP 87 (225)
+..-+-
T Consensus 508 ~~~~m~ 513 (581)
T KOG0995|consen 508 LNTSMK 513 (581)
T ss_pred HHHHHH
Confidence 544443
No 84
>KOG0161|consensus
Probab=71.54 E-value=37 Score=38.92 Aligned_cols=76 Identities=22% Similarity=0.438 Sum_probs=52.9
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDI---MDEFNRDRRDLEQSQDELLKDLKLR 78 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dl---q~E~~~ERedll~tir~l~relkLk 78 (225)
++..++..++.+.-.+..+...++.++...+++++.|.+.+..+..++..- .....+.|.||...+.+|..+|.-.
T Consensus 1066 el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1066 ELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777777777777777777777777666666555443 2445566778888888888877766
No 85
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=71.51 E-value=40 Score=33.83 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=9.4
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLE 26 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQ 26 (225)
|+.+|...+++...+...+..+.
T Consensus 176 l~~eL~~~~ee~e~L~~~~kel~ 198 (546)
T PF07888_consen 176 LEAELEQEEEEMEQLKQQQKELT 198 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333
No 86
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=71.08 E-value=9.5 Score=29.80 Aligned_cols=35 Identities=17% Similarity=0.390 Sum_probs=22.7
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy1302 21 NYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMD 55 (225)
Q Consensus 21 ~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~ 55 (225)
.|..++++++...+++.++..+-..++.||..+++
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 35556666666666666666666666666666664
No 87
>KOG1029|consensus
Probab=71.00 E-value=24 Score=37.13 Aligned_cols=85 Identities=22% Similarity=0.304 Sum_probs=51.7
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDE---FNRDRRDLEQSQDELLKDLKLRKL 80 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E---~~~ERedll~tir~l~relkLk~l 80 (225)
|.-+..+..+...-+..+-..|+.|++...-|++.|-.|++.++..|.-...+ -...|+-+..+|.+|..+||=++.
T Consensus 421 m~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~ 500 (1118)
T KOG1029|consen 421 MLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQE 500 (1118)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444555666778888888888888888888877654333332222 223455556667777777766665
Q ss_pred HHHhcCCh
Q psy1302 81 IIENFIPI 88 (225)
Q Consensus 81 IId~FIP~ 88 (225)
-+-..+|.
T Consensus 501 kl~~l~~E 508 (1118)
T KOG1029|consen 501 KLQKLAPE 508 (1118)
T ss_pred HHHhhhhH
Confidence 55555554
No 88
>PRK14145 heat shock protein GrpE; Provisional
Probab=70.90 E-value=29 Score=30.29 Aligned_cols=44 Identities=14% Similarity=0.306 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy1302 23 STLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQ 66 (225)
Q Consensus 23 ssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~ 66 (225)
.+|+++++...++++.+..+|.-+.+|+.....-..+|++++..
T Consensus 48 ~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~ 91 (196)
T PRK14145 48 EELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVE 91 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666667766777777666666666665543
No 89
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=70.67 E-value=34 Score=31.73 Aligned_cols=56 Identities=21% Similarity=0.349 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhc
Q psy1302 30 QAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQ----------SQDELLKDLKLRKLIIENF 85 (225)
Q Consensus 30 e~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~----------tir~l~relkLk~lIId~F 85 (225)
-..+-|||.-..+|+.-..||.||...-.|-|||-.+ ...+..||||-+.++|+.+
T Consensus 71 RHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTm 136 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETM 136 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888889999999999999999999998654 3556777888778887654
No 90
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=70.60 E-value=11 Score=28.14 Aligned_cols=47 Identities=15% Similarity=0.428 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1302 38 KIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENF 85 (225)
Q Consensus 38 Kl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~F 85 (225)
.++.||+.+++-|..+-. -.+--++-+..|++|..++..+..++..|
T Consensus 32 ~lk~Klq~ar~~i~~lpg-i~~s~eeq~~~i~~Le~~i~~k~~~L~~~ 78 (83)
T PF07544_consen 32 SLKHKLQKARAAIRELPG-IDRSVEEQEEEIEELEEQIRKKREVLQKF 78 (83)
T ss_pred HHHHHHHHHHHHHHhCCC-ccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444 45566777788888888888888887765
No 91
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=70.24 E-value=43 Score=25.05 Aligned_cols=41 Identities=10% Similarity=0.339 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 36 LQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 36 LkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
+..--..++.++.-+-+|...|..=++.+++.|..|.++|.
T Consensus 34 i~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 34 INSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455566677778889999999999999999999874
No 92
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=70.22 E-value=37 Score=35.24 Aligned_cols=6 Identities=17% Similarity=0.406 Sum_probs=2.3
Q ss_pred CCCCCC
Q psy1302 172 YQGPKV 177 (225)
Q Consensus 172 y~~~~~ 177 (225)
.-|..+
T Consensus 709 L~G~~~ 714 (782)
T PRK00409 709 LRGMRY 714 (782)
T ss_pred CCCCCH
Confidence 334433
No 93
>PRK09039 hypothetical protein; Validated
Probab=69.90 E-value=57 Score=30.46 Aligned_cols=52 Identities=4% Similarity=0.076 Sum_probs=27.2
Q ss_pred HHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1302 5 KQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDE 56 (225)
Q Consensus 5 ~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E 56 (225)
+.++...+++..+....|+..+-+|...+..|.-|...+.+++.+|.+.+..
T Consensus 115 ~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~ 166 (343)
T PRK09039 115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKR 166 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555555555555555555555555555443
No 94
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=69.86 E-value=23 Score=30.61 Aligned_cols=48 Identities=25% Similarity=0.416 Sum_probs=29.2
Q ss_pred HhhHHHHHhhcCCHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy1302 12 EESTEEIRGNYSTLEQE-------VQAKNKKLQKIYSKYEEVKQDIQDIMDEFNR 59 (225)
Q Consensus 12 Eee~~~le~~yssLQeE-------ve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ 59 (225)
|+.+.+++.+-..||++ .+.+.+.+.++......++.++.++..+|+.
T Consensus 130 e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 130 ESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666654 3444455666666666667777777766653
No 95
>PRK14160 heat shock protein GrpE; Provisional
Probab=69.68 E-value=58 Score=28.72 Aligned_cols=49 Identities=8% Similarity=0.237 Sum_probs=30.2
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy1302 17 EIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLE 65 (225)
Q Consensus 17 ~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll 65 (225)
.++....+|+++++...++++.+..+|.-+.+|+.....-..+|++++.
T Consensus 58 ~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~ 106 (211)
T PRK14160 58 ELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIY 106 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666666666666666666666666666666543
No 96
>PRK14141 heat shock protein GrpE; Provisional
Probab=69.59 E-value=42 Score=29.56 Aligned_cols=66 Identities=9% Similarity=0.198 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHh
Q psy1302 23 STLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIP-IEELKRLEQR 97 (225)
Q Consensus 23 ssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP-~ee~~kI~~~ 97 (225)
.+++++++...+++..+..+|.-+.+|+..+..-.++|++++... .... ++..|+| .+.+++....
T Consensus 34 ~~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~--------a~~~-~~~dLLpViDnLerAl~~ 100 (209)
T PRK14141 34 DPEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAY--------GIAG-FARDMLSVSDNLRRALDA 100 (209)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH-HHHHHhhhHhHHHHHHhc
Confidence 567788888888888888999999999998888888888766432 2222 3344444 3566666554
No 97
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=69.44 E-value=76 Score=27.56 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy1302 35 KLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQS 67 (225)
Q Consensus 35 kLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~t 67 (225)
.++|+..+|+.+..++.....+|..-.+.+..+
T Consensus 151 e~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~ 183 (236)
T cd07651 151 ELEKNNAKLNKAQSSINSSRRDYQNAVKALREL 183 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444444444444444333
No 98
>PRK14155 heat shock protein GrpE; Provisional
Probab=68.85 E-value=53 Score=28.83 Aligned_cols=67 Identities=10% Similarity=0.172 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHhc
Q psy1302 23 STLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIP-IEELKRLEQRL 98 (225)
Q Consensus 23 ssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP-~ee~~kI~~~a 98 (225)
.+|+++++...+++..+..+|.-+.+|++....-.++|++++... .+. -++..|+| .+.+++..+.+
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~--------a~~-~~~~~LLpV~DnLerAl~~~ 83 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAY--------AIQ-KFARDLLGAADNLGRATAAS 83 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-HHHHHHhhHHhhHHHHHhcc
Confidence 567777777788888888888888888888888888888764332 222 23444444 35566665543
No 99
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=68.74 E-value=14 Score=30.23 Aligned_cols=48 Identities=8% Similarity=0.352 Sum_probs=36.2
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy1302 19 RGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQ 66 (225)
Q Consensus 19 e~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~ 66 (225)
.....+++++++..+++++++..++..+.+++..++....++++++..
T Consensus 10 ~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~ 57 (165)
T PF01025_consen 10 DEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKK 57 (165)
T ss_dssp HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777788888888888888888888888888777775554
No 100
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=68.71 E-value=34 Score=34.25 Aligned_cols=58 Identities=22% Similarity=0.446 Sum_probs=26.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CChHHHHHHHHhccc
Q psy1302 43 YEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENF--IPIEELKRLEQRLVY 100 (225)
Q Consensus 43 l~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~F--IP~ee~~kI~~~a~w 100 (225)
+++.+.|++.++.+.+.+++.+..--+++....+-...-+..+ .|..+.++|++....
T Consensus 214 i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~~ 273 (555)
T TIGR03545 214 LQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKYAI 273 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHHHhCC
Confidence 3445555555555554444433333333333332222222222 467777777765544
No 101
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=68.54 E-value=53 Score=28.40 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=13.6
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHH
Q psy1302 15 TEEIRGNYSTLEQEVQAKNKKLQKIYS 41 (225)
Q Consensus 15 ~~~le~~yssLQeEve~KtkkLkKl~~ 41 (225)
...+++.+.+|..|-+.+..++.++..
T Consensus 95 l~~~ek~l~~Lk~e~evL~qr~~kle~ 121 (201)
T PF13851_consen 95 LKELEKELKDLKWEHEVLEQRFEKLEQ 121 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544444433
No 102
>KOG0996|consensus
Probab=68.52 E-value=54 Score=35.82 Aligned_cols=67 Identities=9% Similarity=0.164 Sum_probs=41.3
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 15 TEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM---DEFNRDRRDLEQSQDELLKDLKLRKLI 81 (225)
Q Consensus 15 ~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq---~E~~~ERedll~tir~l~relkLk~lI 81 (225)
.-+++..+..++|.....+.+++||...+...+.++.++. +.+.++.+++...|.+|...+.-.+..
T Consensus 393 ~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~ 462 (1293)
T KOG0996|consen 393 FQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERE 462 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666777777778888888887777766666655 345555555555555555544444333
No 103
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=68.31 E-value=44 Score=30.99 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=9.3
Q ss_pred hhHHHHHhhcCCHHHHHHH
Q psy1302 13 ESTEEIRGNYSTLEQEVQA 31 (225)
Q Consensus 13 ee~~~le~~yssLQeEve~ 31 (225)
+-.-.+.++|..|+.|+..
T Consensus 172 ~~~~~l~~~~~~L~~e~~~ 190 (312)
T smart00787 172 SIKPKLRDRKDALEEELRQ 190 (312)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555543
No 104
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=68.00 E-value=55 Score=30.55 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=13.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1302 21 NYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM 54 (225)
Q Consensus 21 ~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq 54 (225)
+..+|++|+..|+.-.......+-.+.++|-|+|
T Consensus 214 qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ 247 (306)
T PF04849_consen 214 QIASLSEELARKTEENRRQQEEITSLLSQIVDLQ 247 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333333333333333
No 105
>KOG0250|consensus
Probab=67.89 E-value=36 Score=36.67 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 60 DRRDLEQSQDELLKDLKLRKLII 82 (225)
Q Consensus 60 ERedll~tir~l~relkLk~lII 82 (225)
+++++.+-+..|.+|+.=...++
T Consensus 395 ~~~e~e~k~~~L~~evek~e~~~ 417 (1074)
T KOG0250|consen 395 ELEERENKLEQLKKEVEKLEEQI 417 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333333
No 106
>KOG0977|consensus
Probab=67.83 E-value=55 Score=32.88 Aligned_cols=68 Identities=22% Similarity=0.402 Sum_probs=47.9
Q ss_pred hhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q psy1302 13 ESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR----------RDLEQSQDELLKDLKLRKL 80 (225)
Q Consensus 13 ee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ER----------edll~tir~l~relkLk~l 80 (225)
+...+....+++++-|+.....++++|-..+.-++.|+.-|..+..+-| .|++..+..|..+|.++..
T Consensus 141 e~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~ 218 (546)
T KOG0977|consen 141 EKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKR 218 (546)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3444556667777777777788888888888888888888877777766 3555555666666666653
No 107
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=67.78 E-value=44 Score=26.86 Aligned_cols=56 Identities=23% Similarity=0.398 Sum_probs=27.3
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN 58 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~ 58 (225)
.+...++.--.+...+-+..-+++.+++.....+...+..++.++.+..++..++.
T Consensus 31 ~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~ 86 (150)
T PF07200_consen 31 ELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQD 86 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555555555555555555555544433
No 108
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=67.67 E-value=76 Score=30.87 Aligned_cols=42 Identities=12% Similarity=0.299 Sum_probs=24.7
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKY 43 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl 43 (225)
.++++++++.+........+.+.|+.++....+.+..+.+.+
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql 82 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQL 82 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777666666666666666666555555544444433
No 109
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=67.64 E-value=28 Score=35.86 Aligned_cols=64 Identities=19% Similarity=0.389 Sum_probs=28.4
Q ss_pred HHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 9 DKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 9 e~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
...+..+.+++..-.-|+.+.+..-++|..+....+.++..-+.|.+. .++..+.+..|.+.++
T Consensus 554 ~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR----~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 554 EKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAER----YEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 333444445555555555555544444444444444444333333332 2334444444444444
No 110
>KOG0239|consensus
Probab=66.82 E-value=55 Score=33.57 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=16.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1302 22 YSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDE 56 (225)
Q Consensus 22 yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E 56 (225)
...|+.......++++.|..++..++.+..++..+
T Consensus 229 ~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~ 263 (670)
T KOG0239|consen 229 IKPLEGLESTIKKKIQALQQELEELKAELKELNDQ 263 (670)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555444444433
No 111
>PRK14146 heat shock protein GrpE; Provisional
Probab=66.71 E-value=48 Score=29.23 Aligned_cols=66 Identities=12% Similarity=0.329 Sum_probs=37.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh-HHHHHHHH
Q psy1302 22 YSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPI-EELKRLEQ 96 (225)
Q Consensus 22 yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~-ee~~kI~~ 96 (225)
+.+|+++++...+++..+..+|.-+.+|+.....-..+|++++...- ..-++..|+|. +++++...
T Consensus 56 ~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a---------~e~~~~~lLpv~DnlerAl~ 122 (215)
T PRK14146 56 ETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEA---------VKSLVSGFLNPIDNLERVGA 122 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhHHhHHHHHHh
Confidence 44555556666666666666666666666666666666665543321 12345555564 55666554
No 112
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=66.69 E-value=46 Score=33.02 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=30.6
Q ss_pred hHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy1302 14 STEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRD 63 (225)
Q Consensus 14 e~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERed 63 (225)
........|+.++++.+...++++.+......++..|.++..+-..-|..
T Consensus 370 ~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~k 419 (569)
T PRK04778 370 RIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREK 419 (569)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445777777777777777766666666666666666555444433
No 113
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=66.63 E-value=81 Score=27.71 Aligned_cols=51 Identities=16% Similarity=0.418 Sum_probs=29.7
Q ss_pred CCHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 23 STLEQEVQAK-NKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLK 73 (225)
Q Consensus 23 ssLQeEve~K-tkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~r 73 (225)
+++++.|+.. +.+...+...+..+-..+..|+.....++.+....|..+..
T Consensus 73 ~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~ 124 (247)
T PF06705_consen 73 NNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQ 124 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4444444333 44555555666666667777777777676666666655433
No 114
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=66.59 E-value=32 Score=31.86 Aligned_cols=57 Identities=16% Similarity=0.388 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1302 25 LEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENF 85 (225)
Q Consensus 25 LQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~F 85 (225)
.++++..+..+|.++..++..++.+.++.. .++..|.+.+...++.|..-..+|+.+
T Consensus 233 ~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~----~e~~~l~~~~~~~~~kl~rA~~Li~~L 289 (344)
T PF12777_consen 233 AEEQLAEKQAELAELEEKLAALQKEYEEAQ----KEKQELEEEIEETERKLERAEKLISGL 289 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhccHHHHHhhh
Confidence 333344444444444444444444443333 345556666665555555555555544
No 115
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=66.56 E-value=38 Score=25.59 Aligned_cols=56 Identities=14% Similarity=0.436 Sum_probs=41.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 22 YSTLEQEVQAKNKKLQKIYSKYEEVKQ------DIQDIMDEFNRDRRDLEQSQDELLKDLKL 77 (225)
Q Consensus 22 yssLQeEve~KtkkLkKl~~kl~~~k~------Ei~Dlq~E~~~ERedll~tir~l~relkL 77 (225)
|-..++||...-.++..++..+..+.. |+..+..+....-.++..++.+|.+-+..
T Consensus 3 F~~v~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~i 64 (97)
T PF09177_consen 3 FFVVKDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRI 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678888888889999888888754 56677777777777777777777776654
No 116
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=66.44 E-value=74 Score=26.32 Aligned_cols=41 Identities=15% Similarity=0.361 Sum_probs=25.1
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1302 18 IRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN 58 (225)
Q Consensus 18 le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~ 58 (225)
......+|++++...|..++.|...|..+..|-.+|..+-+
T Consensus 50 ~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq 90 (140)
T PF10473_consen 50 SKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQ 90 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666666666666666666654443
No 117
>PRK14144 heat shock protein GrpE; Provisional
Probab=65.99 E-value=46 Score=29.12 Aligned_cols=69 Identities=14% Similarity=0.359 Sum_probs=40.4
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh-HHHHHHHHhc
Q psy1302 21 NYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPI-EELKRLEQRL 98 (225)
Q Consensus 21 ~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~-ee~~kI~~~a 98 (225)
.+..+.++++...+++..+..+|.-+.+|+.....-.++|++++... .. .-++..|+|. +++++....+
T Consensus 46 ~~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~--------a~-~~~~~~LLpV~DnLerAl~~~ 115 (199)
T PRK14144 46 SYTALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKY--------GV-EKLISALLPVVDSLEQALQLA 115 (199)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH-HHHHHHHhhHHhHHHHHHHcc
Confidence 34455666666666666666666666666666666666666654332 22 2344555554 6677766543
No 118
>PRK12704 phosphodiesterase; Provisional
Probab=65.48 E-value=41 Score=33.34 Aligned_cols=11 Identities=9% Similarity=0.320 Sum_probs=4.1
Q ss_pred HHHHhHHHHHH
Q psy1302 45 EVKQDIQDIMD 55 (225)
Q Consensus 45 ~~k~Ei~Dlq~ 55 (225)
..+.++..+..
T Consensus 121 ~re~eLe~~~~ 131 (520)
T PRK12704 121 QKQQELEKKEE 131 (520)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 119
>KOG0995|consensus
Probab=65.33 E-value=85 Score=31.75 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=14.6
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQ 27 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQe 27 (225)
..|+.+++++|++..-+...-++|+-
T Consensus 297 ~~l~~Eie~kEeE~e~lq~~~d~Lk~ 322 (581)
T KOG0995|consen 297 EMLKSEIEEKEEEIEKLQKENDELKK 322 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666555555555543
No 120
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=65.13 E-value=66 Score=27.73 Aligned_cols=41 Identities=17% Similarity=0.405 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy1302 25 LEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLE 65 (225)
Q Consensus 25 LQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll 65 (225)
+++++......++.+..+|..+.+|+.-++...++|+++.-
T Consensus 41 ~~~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~ 81 (193)
T COG0576 41 EQQEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAK 81 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33667777777777778888888888888888888777654
No 121
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=64.94 E-value=48 Score=29.45 Aligned_cols=62 Identities=18% Similarity=0.303 Sum_probs=44.0
Q ss_pred hHHHHHhhcCCHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 14 STEEIRGNYSTLEQEVQAKNKKLQKIY-----SKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDL 75 (225)
Q Consensus 14 e~~~le~~yssLQeEve~KtkkLkKl~-----~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~rel 75 (225)
.+..+-..|.+.+.++..|..++.||. .|+.+++.||.+.+.....-+.++...-.-..+||
T Consensus 127 ~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El 193 (234)
T cd07664 127 QRMKCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEV 193 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666788889999998888888873 48888999988877766655555555444444444
No 122
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=64.79 E-value=55 Score=28.66 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy1302 62 RDLEQSQDELLKDLK 76 (225)
Q Consensus 62 edll~tir~l~relk 76 (225)
..+.+.|+.|+..|+
T Consensus 172 ~~~e~~i~~L~~~lk 186 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLK 186 (237)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555666666554
No 123
>PRK14140 heat shock protein GrpE; Provisional
Probab=64.74 E-value=93 Score=26.97 Aligned_cols=15 Identities=20% Similarity=0.521 Sum_probs=7.2
Q ss_pred HHhcCCh-HHHHHHHH
Q psy1302 82 IENFIPI-EELKRLEQ 96 (225)
Q Consensus 82 Id~FIP~-ee~~kI~~ 96 (225)
+..|+|. +.+++...
T Consensus 90 ~~~LLpvlDnLerAl~ 105 (191)
T PRK14140 90 ASDLLPALDNFERALQ 105 (191)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4444453 45555543
No 124
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=64.38 E-value=1.7e+02 Score=29.76 Aligned_cols=42 Identities=12% Similarity=0.163 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhccccccCCccccC
Q psy1302 65 EQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIV 110 (225)
Q Consensus 65 l~tir~l~relkLk~lIId~FIP~ee~~kI~~~a~wdEe~~~W~l~ 110 (225)
+..++.|+|+......+.+.|+-.-+..+|.. .-....|.+=
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~----~~~~~~~~vi 416 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQAASRQ----NYVPVDARVA 416 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCCCcEEe
Confidence 66788999999999999999988877777766 2345555443
No 125
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=64.12 E-value=14 Score=26.10 Aligned_cols=32 Identities=28% Similarity=0.564 Sum_probs=19.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy1302 22 YSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDI 53 (225)
Q Consensus 22 yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dl 53 (225)
|.+++.++...++++.++......++.+++.+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666666666666666655
No 126
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=63.45 E-value=95 Score=27.04 Aligned_cols=42 Identities=19% Similarity=0.400 Sum_probs=23.8
Q ss_pred HHHHHHhHhhHHHHHhhcCC----HHHHHHHHHHHHHHHHHHHHHH
Q psy1302 5 KQELDKKEESTEEIRGNYST----LEQEVQAKNKKLQKIYSKYEEV 46 (225)
Q Consensus 5 ~qele~~Eee~~~le~~yss----LQeEve~KtkkLkKl~~kl~~~ 46 (225)
.++..+-+.++..+...|+. |+..+-.+++.+..+...|+++
T Consensus 28 ~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l 73 (206)
T PF14988_consen 28 IQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQAL 73 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555556666666654 5555555566666665555554
No 127
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=63.25 E-value=14 Score=29.24 Aligned_cols=37 Identities=19% Similarity=0.450 Sum_probs=32.4
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1302 20 GNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDE 56 (225)
Q Consensus 20 ~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E 56 (225)
..|..++..+....+++.+|.+.-..+++||++|++.
T Consensus 50 ~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 50 ADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3567788888899999999999999999999999987
No 128
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=63.03 E-value=70 Score=27.23 Aligned_cols=51 Identities=12% Similarity=0.261 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 24 TLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKD 74 (225)
Q Consensus 24 sLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~re 74 (225)
.++.|.+.....+.+|..+++.+..|+..|..++..=.+||..-+.-+.|=
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777778888888888888888877777777766655555443
No 129
>PRK01156 chromosome segregation protein; Provisional
Probab=62.96 E-value=56 Score=33.86 Aligned_cols=48 Identities=13% Similarity=0.252 Sum_probs=21.8
Q ss_pred HHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy1302 6 QELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDI 53 (225)
Q Consensus 6 qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dl 53 (225)
.+|...+.....+...+..+..+++.....++.+...+..++.++..+
T Consensus 197 ~eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~~~l~~l 244 (895)
T PRK01156 197 LELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNEL 244 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444454444444444444444444444444443
No 130
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=62.90 E-value=53 Score=26.33 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=10.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q psy1302 42 KYEEVKQDIQDIMDEFNRDRRDLEQ 66 (225)
Q Consensus 42 kl~~~k~Ei~Dlq~E~~~ERedll~ 66 (225)
+.+.++.-..+++.+.+.++..+..
T Consensus 88 ~~~~l~~~~~~~~~~l~~~~~~~~~ 112 (158)
T PF03938_consen 88 KEQELQQFQQQAQQQLQQEEQELLQ 112 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444333
No 131
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=62.79 E-value=30 Score=24.83 Aligned_cols=51 Identities=6% Similarity=0.255 Sum_probs=26.6
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM 54 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq 54 (225)
|...|.+-|....-.+.....|.+.|-...+.|.+|...++.+...+.++.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555555555556666666666666666666666666666654
No 132
>KOG0243|consensus
Probab=62.69 E-value=86 Score=33.88 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=41.7
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy1302 18 IRGNYSTLEQEVQAKNKKLQKIYSKYE-------EVKQDIQDI---MDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIP 87 (225)
Q Consensus 18 le~~yssLQeEve~KtkkLkKl~~kl~-------~~k~Ei~Dl---q~E~~~ERedll~tir~l~relkLk~lIId~FIP 87 (225)
+.+....+.+|++.+.+.|+.+...|. .++.+..-+ =.....+-+.+...+.++...|++...||+..--
T Consensus 446 ~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~ 525 (1041)
T KOG0243|consen 446 MAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEK 525 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555554444 222222222 2344556677778888888889999999987665
Q ss_pred hH
Q psy1302 88 IE 89 (225)
Q Consensus 88 ~e 89 (225)
-+
T Consensus 526 se 527 (1041)
T KOG0243|consen 526 SE 527 (1041)
T ss_pred HH
Confidence 43
No 133
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=62.40 E-value=99 Score=26.39 Aligned_cols=84 Identities=19% Similarity=0.298 Sum_probs=52.6
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEV-KQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKL 80 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~-k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~l 80 (225)
++|...+.+-......+......++.+++...+.+.++..+-+.+ +..-.||-.+.-.++.++...+..+..++.-...
T Consensus 33 rd~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~ 112 (221)
T PF04012_consen 33 RDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEA 112 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666665555555556666666666666666666655544 4455677777777777777777777766666665
Q ss_pred HHHhc
Q psy1302 81 IIENF 85 (225)
Q Consensus 81 IId~F 85 (225)
.++.+
T Consensus 113 ~~~~l 117 (221)
T PF04012_consen 113 QVEKL 117 (221)
T ss_pred HHHHH
Confidence 55544
No 134
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=62.31 E-value=34 Score=31.48 Aligned_cols=80 Identities=15% Similarity=0.219 Sum_probs=58.1
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLI 81 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lI 81 (225)
..++++|.....+..........++.+++.++.++..+..+...+..+|.+++..-..-|.==...+..|..++.+.+.+
T Consensus 212 ~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 212 EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 45777888888888888888888888888888888888888888888888887666544443444555555555555443
No 135
>PRK14151 heat shock protein GrpE; Provisional
Probab=62.14 E-value=35 Score=29.14 Aligned_cols=67 Identities=15% Similarity=0.203 Sum_probs=45.4
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh-HHHHHHHH
Q psy1302 21 NYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPI-EELKRLEQ 96 (225)
Q Consensus 21 ~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~-ee~~kI~~ 96 (225)
...+|+++++...++++.+..+|.-+.+|++....-.++|++++...-. .-++..|+|. +.+++...
T Consensus 21 ~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~---------~~~~~~LLpv~DnlerAl~ 88 (176)
T PRK14151 21 AGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFAL---------EKFAGDLLPVVDSLERGLE 88 (176)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhHHhHHHHHHh
Confidence 3456777777778888888888888888888888888888877654321 2344555553 55665543
No 136
>PRK14157 heat shock protein GrpE; Provisional
Probab=61.96 E-value=76 Score=28.38 Aligned_cols=64 Identities=6% Similarity=0.225 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh-HHHHHHHHh
Q psy1302 25 LEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPI-EELKRLEQR 97 (225)
Q Consensus 25 LQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~-ee~~kI~~~ 97 (225)
+..+++...+++..+..+|.-+++|+.....-..+|++++...- ..-++..|+|. +.+++....
T Consensus 82 ~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a---------~~~~~~dLLpvlDnLeRAl~~ 146 (227)
T PRK14157 82 TLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHG---------IIDVLTALLPALDDIDRIREH 146 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhhhhhHHHHHhc
Confidence 44566667777777777777778888888877777777665433 23356666664 567777654
No 137
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=61.85 E-value=54 Score=30.38 Aligned_cols=53 Identities=25% Similarity=0.442 Sum_probs=29.3
Q ss_pred HHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1302 5 KQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEF 57 (225)
Q Consensus 5 ~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~ 57 (225)
++++++.+++....+......+.++.....+|..|...|..+..|...++.+.
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~ 272 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEI 272 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555443
No 138
>PRK14147 heat shock protein GrpE; Provisional
Probab=61.50 E-value=39 Score=28.72 Aligned_cols=64 Identities=13% Similarity=0.269 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh-HHHHHHHH
Q psy1302 24 TLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPI-EELKRLEQ 96 (225)
Q Consensus 24 sLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~-ee~~kI~~ 96 (225)
+|+++++...++++.+..+|.-+.+|+.....-.++|++++...-. ..++..|+|. +.+++...
T Consensus 22 ~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~---------~~~~~~lLpv~DnlerAl~ 86 (172)
T PRK14147 22 PLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFAN---------EKLLGELLPVFDSLDAGLT 86 (172)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhhhhHHHHHHh
Confidence 3667777777788888888888888888888888888887544322 3345556664 55666554
No 139
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=61.35 E-value=65 Score=30.87 Aligned_cols=66 Identities=20% Similarity=0.422 Sum_probs=33.7
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 18 IRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQ---------DIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIE 83 (225)
Q Consensus 18 le~~yssLQeEve~KtkkLkKl~~kl~~~k~---------Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId 83 (225)
+.+++..|.+++......+.++...+..++. +.......+...+..+.+.+.++..+++-...-+.
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELE 406 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433332 34455555566666666666666666664443333
No 140
>PRK14140 heat shock protein GrpE; Provisional
Probab=60.89 E-value=37 Score=29.45 Aligned_cols=39 Identities=10% Similarity=0.319 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy1302 25 LEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRD 63 (225)
Q Consensus 25 LQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERed 63 (225)
++++++...+++..+..+|.-+.+|+.....-..+|+++
T Consensus 42 l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~ 80 (191)
T PRK14140 42 EQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEA 80 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555566666666666666666666666654
No 141
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=59.93 E-value=49 Score=26.62 Aligned_cols=57 Identities=14% Similarity=0.332 Sum_probs=33.2
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHHHHHHH-------HHHH---HHHHHHHHHHHHhHHHHHHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAK-------NKKL---QKIYSKYEEVKQDIQDIMDEFNR 59 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQeEve~K-------tkkL---kKl~~kl~~~k~Ei~Dlq~E~~~ 59 (225)
.|+.+|...|-+...+...++.|+.+-+.. +... +.....+..++.++.+++..|+.
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t 86 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQT 86 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666655555555554443333 3322 34445566667788888877764
No 142
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=59.39 E-value=1.4e+02 Score=26.97 Aligned_cols=58 Identities=12% Similarity=0.180 Sum_probs=27.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCChHHHHHHHHhccccccCC
Q psy1302 48 QDIQDIMDEFNRDRRDLEQSQDELLK---DLKLRKLIIENFIPIEELKRLEQRLVYDEESS 105 (225)
Q Consensus 48 ~Ei~Dlq~E~~~ERedll~tir~l~r---elkLk~lIId~FIP~ee~~kI~~~a~wdEe~~ 105 (225)
..+..+...+...+..+...+..+.+ .+.-+..-+..=+|++-+...+....|....+
T Consensus 131 ~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri~~~~kg~g 191 (239)
T COG1579 131 ERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRKNKKGVG 191 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCce
Confidence 33333333333334444444444433 22233333455577877777776666654433
No 143
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=59.34 E-value=83 Score=32.14 Aligned_cols=73 Identities=22% Similarity=0.389 Sum_probs=43.3
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRK 79 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~ 79 (225)
.|+.++++.+.+...++.+..++..++..+-.+= .++.+...+|..|+.+...++....+--+.|.+-.+++.
T Consensus 440 ~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~----rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 440 ELKRELEELKREIEKLESELERFRREVRDKVRKD----REIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666666666665433222 345556777777777777666655555555555555554
No 144
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=59.30 E-value=1.5e+02 Score=27.49 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q psy1302 37 QKIYSKYEEVKQDIQDIMDEF 57 (225)
Q Consensus 37 kKl~~kl~~~k~Ei~Dlq~E~ 57 (225)
.-|+.++..+...+..++.+|
T Consensus 115 d~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 115 DLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 145
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=59.20 E-value=75 Score=32.57 Aligned_cols=75 Identities=12% Similarity=0.364 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHhcCChHHHHHH
Q psy1302 24 TLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKL---------RKLIIENFIPIEELKRL 94 (225)
Q Consensus 24 sLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkL---------k~lIId~FIP~ee~~kI 94 (225)
+.++.++...++++.+...++.++.++.++-.++..+-..+.+.++....-... ...+++-+||.++.+++
T Consensus 226 ~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~GWvP~~~~~~l 305 (759)
T PF01496_consen 226 TPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLRKEKEIYEALNKFASTETNVFILEGWVPEKDVEEL 305 (759)
T ss_dssp G-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---SEEEEEEE-TTTHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccEEEEEEeccHHHHHHH
Confidence 455666666677777777777777777766666555444444333332222222 22345567899998888
Q ss_pred HHhc
Q psy1302 95 EQRL 98 (225)
Q Consensus 95 ~~~a 98 (225)
++..
T Consensus 306 ~~~l 309 (759)
T PF01496_consen 306 KKAL 309 (759)
T ss_dssp HHT-
T ss_pred HHHH
Confidence 8754
No 146
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=58.77 E-value=69 Score=32.95 Aligned_cols=78 Identities=17% Similarity=0.339 Sum_probs=46.3
Q ss_pred hhHHHHHhhcCCHHHHHHHHHHHHH-HHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH
Q psy1302 13 ESTEEIRGNYSTLEQEVQAKNKKLQ-KIY-SKYEEVKQDIQDIMDEFNRDRRDLEQSQD---------ELLKDLKLRKLI 81 (225)
Q Consensus 13 ee~~~le~~yssLQeEve~KtkkLk-Kl~-~kl~~~k~Ei~Dlq~E~~~ERedll~tir---------~l~relkLk~lI 81 (225)
.....|+++|..|+-|++...+.|- +-| .-...|-.|+..+-++-++.-..+-+++. .+.+++.-+..+
T Consensus 242 ~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~~i~s~~~k 321 (683)
T PF08580_consen 242 DRYERLEKKWKKLEKEAESLKKELIEDRWNIVFRNLGRQAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSKQIESKEKK 321 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHH
Confidence 3345566667777776666655442 222 23344444444444444444444444433 378999999999
Q ss_pred HHhcCChHH
Q psy1302 82 IENFIPIEE 90 (225)
Q Consensus 82 Id~FIP~ee 90 (225)
+.|++|.-+
T Consensus 322 ~~~~~~~I~ 330 (683)
T PF08580_consen 322 KSHYFPAIY 330 (683)
T ss_pred HhccHHHHH
Confidence 999999763
No 147
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=58.71 E-value=71 Score=27.76 Aligned_cols=60 Identities=17% Similarity=0.363 Sum_probs=37.9
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 15 TEEIRGNYSTLEQEVQAKNKKLQKIY-----SKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKD 74 (225)
Q Consensus 15 ~~~le~~yssLQeEve~KtkkLkKl~-----~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~re 74 (225)
+..+-..|.+++.++..|..++.||. .|+.+++.||.+.+.....-+.++...-.....|
T Consensus 118 R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~E 182 (224)
T cd07623 118 RVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKE 182 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566678888888888887777773 4677777777776655554444444433333333
No 148
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=58.69 E-value=63 Score=24.69 Aligned_cols=52 Identities=15% Similarity=0.293 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHH------HHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy1302 23 STLEQEVQAKNKKLQ------KIYSKYEEVKQDIQDIMDEFN-RDRRDLEQSQDELLKD 74 (225)
Q Consensus 23 ssLQeEve~KtkkLk------Kl~~kl~~~k~Ei~Dlq~E~~-~ERedll~tir~l~re 74 (225)
..|++|++....++. +.-.....++.|+.-++.-+. .+|+-++..|..|..+
T Consensus 27 ~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~~~gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 27 EALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFYVEGEREMLLQEISELRDQ 85 (86)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 777777777776654 344556678888888888873 4899999999988765
No 149
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=58.54 E-value=77 Score=31.36 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q psy1302 36 LQKIYSKYEEVKQDIQDIMDEFN 58 (225)
Q Consensus 36 LkKl~~kl~~~k~Ei~Dlq~E~~ 58 (225)
|.+....|...+.++.+...+..
T Consensus 99 Lekre~~Le~ke~~L~~re~eLe 121 (514)
T TIGR03319 99 LDKKEENLEKKEKELSNKEKNLD 121 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444443333
No 150
>KOG4809|consensus
Probab=58.36 E-value=94 Score=31.51 Aligned_cols=81 Identities=17% Similarity=0.273 Sum_probs=53.0
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----------------HHHHHHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDE----------------FNRDRRDLEQ 66 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E----------------~~~ERedll~ 66 (225)
.++.++.++++..+++.+.-+||.--...+.++|+.+---|.+-+.|+.|+... |...+.+++-
T Consensus 349 ~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~le~ 428 (654)
T KOG4809|consen 349 ALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQLEK 428 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHHHH
Confidence 456677777777888888888877777777777877777777777887777643 3444444444
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1302 67 SQDELLKDLKLRKLIIE 83 (225)
Q Consensus 67 tir~l~relkLk~lIId 83 (225)
.+..-..+++.-+..++
T Consensus 429 e~~~y~de~~kaqaevd 445 (654)
T KOG4809|consen 429 EASYYRDECGKAQAEVD 445 (654)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444455544444443
No 151
>COG1422 Predicted membrane protein [Function unknown]
Probab=57.54 E-value=54 Score=28.82 Aligned_cols=55 Identities=18% Similarity=0.397 Sum_probs=32.6
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------HHHHHHHHHHHHHHHHHHH
Q psy1302 20 GNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMD--------EFNRDRRDLEQSQDELLKD 74 (225)
Q Consensus 20 ~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~--------E~~~ERedll~tir~l~re 74 (225)
.-|.|+-+..=.=.+++++++...++.+.|+...++ .-+.++.++.+.++++.+.
T Consensus 58 gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~ 120 (201)
T COG1422 58 GLYITILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKM 120 (201)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544455666666666666666655554 3455666777777777664
No 152
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=57.38 E-value=1.2e+02 Score=25.87 Aligned_cols=80 Identities=16% Similarity=0.383 Sum_probs=46.0
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHH------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKN------KKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKL 77 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~Kt------kkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkL 77 (225)
++.++..-..+...++.+...|+++++... ..-..+-.++++++.++..++.++..-..---+.|..+.++++.
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~ 146 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKI 146 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 444555555555555555555555554432 12234556777777777777777775444444566666666665
Q ss_pred HHHHHH
Q psy1302 78 RKLIIE 83 (225)
Q Consensus 78 k~lIId 83 (225)
...-++
T Consensus 147 ~~~~an 152 (188)
T PF03962_consen 147 AKEAAN 152 (188)
T ss_pred HHHHHH
Confidence 554443
No 153
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=57.33 E-value=1.3e+02 Score=26.32 Aligned_cols=34 Identities=29% Similarity=0.501 Sum_probs=17.6
Q ss_pred HHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHH
Q psy1302 5 KQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQK 38 (225)
Q Consensus 5 ~qele~~Eee~~~le~~yssLQeEve~KtkkLkK 38 (225)
...|+..++-...++.+...|.+++...+..|+.
T Consensus 126 E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~ 159 (237)
T PF00261_consen 126 EQELERAEERAEAAESKIKELEEELKSVGNNLKS 159 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555543
No 154
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=57.24 E-value=69 Score=22.89 Aligned_cols=37 Identities=27% Similarity=0.423 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 35 KLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDL 75 (225)
Q Consensus 35 kLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~rel 75 (225)
.|+|+..-+.+.+..++|-. ....+|...|..|.+++
T Consensus 19 EL~kvk~~n~~~e~kLqeaE----~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 19 ELTKVKSANLAFESKLQEAE----KRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 34444444444444443322 23345555555555554
No 155
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=57.22 E-value=91 Score=31.15 Aligned_cols=73 Identities=18% Similarity=0.376 Sum_probs=50.9
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDL 75 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~rel 75 (225)
+|-.++...+-...-....|..|+--++.-.+..+.+...++.+.+.|.-|++|-..-|..|++.+..++-.|
T Consensus 424 eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHL 496 (518)
T PF10212_consen 424 ELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHL 496 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4445555555555566666667776666666666777788888888888888887777777777777666554
No 156
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=56.85 E-value=1.2e+02 Score=31.25 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1302 60 DRRDLEQSQDELLKDLKLRKLIIEN 84 (225)
Q Consensus 60 ERedll~tir~l~relkLk~lIId~ 84 (225)
-|.+|+..++.|.+|||.+.--+..
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~ 570 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRE 570 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999988755443
No 157
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=56.70 E-value=1.1e+02 Score=32.99 Aligned_cols=47 Identities=21% Similarity=0.531 Sum_probs=18.8
Q ss_pred HHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy1302 7 ELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDI 53 (225)
Q Consensus 7 ele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dl 53 (225)
++..-++....+++.+..+++++....+.+..+..++..+..++..+
T Consensus 240 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~ 286 (1163)
T COG1196 240 ELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEEL 286 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444443333333
No 158
>PRK14139 heat shock protein GrpE; Provisional
Probab=56.59 E-value=49 Score=28.56 Aligned_cols=65 Identities=14% Similarity=0.246 Sum_probs=43.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh-HHHHHHH
Q psy1302 22 YSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPI-EELKRLE 95 (225)
Q Consensus 22 yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~-ee~~kI~ 95 (225)
..+|+++++...++++.+..+|.-+.+|++....-..+|++++...-. .-++..|+|. +.+++..
T Consensus 34 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~---------~~~~~~LLpv~DnLerAl 99 (185)
T PRK14139 34 APALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAI---------ESFAESLLPVKDSLEAAL 99 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhHHhHHHHHH
Confidence 445667777777777788888888888888888888888777654321 2344455553 4555554
No 159
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=56.57 E-value=1.4e+02 Score=26.18 Aligned_cols=7 Identities=14% Similarity=0.838 Sum_probs=2.7
Q ss_pred HHhHHHH
Q psy1302 47 KQDIQDI 53 (225)
Q Consensus 47 k~Ei~Dl 53 (225)
+.|+.||
T Consensus 66 ~eEledL 72 (193)
T PF14662_consen 66 EEELEDL 72 (193)
T ss_pred HHHHHHH
Confidence 3333333
No 160
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=56.05 E-value=37 Score=26.68 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=34.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 42 KYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRK 79 (225)
Q Consensus 42 kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~ 79 (225)
.+.++..||..+|.++.....+++..+|.|++=++.++
T Consensus 53 tle~ve~Ei~~lQ~qL~~~ldeYE~~VrrLE~fvkvLn 90 (99)
T PF11083_consen 53 TLEQVEKEIRELQNQLGLYLDEYEKLVRRLEKFVKVLN 90 (99)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999998887776
No 161
>PRK14149 heat shock protein GrpE; Provisional
Probab=55.57 E-value=1.1e+02 Score=26.67 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHh
Q psy1302 28 EVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIP-IEELKRLEQR 97 (225)
Q Consensus 28 Eve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP-~ee~~kI~~~ 97 (225)
.++...+++..+..+|.-+.+|+.....-..+|++++...- . .-++..|+| .+.+++..+.
T Consensus 44 ~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~a--------~-~~~~~~LLpVlDnLerAl~~ 105 (191)
T PRK14149 44 IKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEYA--------Y-EKIALDLLPVIDALLGALKS 105 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H-HHHHHHHhhHHhHHHHHHhc
Confidence 45556667777777888888888888888888877665432 2 223444555 3566665543
No 162
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=55.54 E-value=1.2e+02 Score=25.01 Aligned_cols=60 Identities=18% Similarity=0.411 Sum_probs=31.2
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 16 EEIRGNYSTLEQEVQAKNKKLQKIYS-------KYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDL 75 (225)
Q Consensus 16 ~~le~~yssLQeEve~KtkkLkKl~~-------kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~rel 75 (225)
..+...|.++++.+..|..++.|+.. ++..++.+|.+++.+...-+.++...-..+..|+
T Consensus 113 ~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El 179 (218)
T cd07596 113 ADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERLKEEL 179 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677777777777766666542 4444444444444444444444333333333333
No 163
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=55.53 E-value=1.4e+02 Score=29.08 Aligned_cols=27 Identities=11% Similarity=0.341 Sum_probs=9.9
Q ss_pred HHhHhhHHHHHhhcCCHHHHHHHHHHH
Q psy1302 9 DKKEESTEEIRGNYSTLEQEVQAKNKK 35 (225)
Q Consensus 9 e~~Eee~~~le~~yssLQeEve~Ktkk 35 (225)
.....++-.++..-.++..++...+..
T Consensus 55 ~~~~~~~~kL~~~lk~~e~~i~~~~~q 81 (420)
T COG4942 55 REQQDQRAKLEKQLKSLETEIASLEAQ 81 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 164
>PRK09039 hypothetical protein; Validated
Probab=54.94 E-value=1.8e+02 Score=27.11 Aligned_cols=8 Identities=0% Similarity=0.156 Sum_probs=4.2
Q ss_pred CCccccCC
Q psy1302 104 SSQWNIVP 111 (225)
Q Consensus 104 ~~~W~l~~ 111 (225)
.+.|.|+.
T Consensus 217 g~~~~~~~ 224 (343)
T PRK09039 217 GDRFVFQS 224 (343)
T ss_pred CCEEEecC
Confidence 44555554
No 165
>KOG0804|consensus
Probab=54.90 E-value=93 Score=30.73 Aligned_cols=57 Identities=21% Similarity=0.381 Sum_probs=30.2
Q ss_pred HHHH-HHHHhHhhHHHHHhhcCCHHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy1302 3 EMKQ-ELDKKEESTEEIRGNYSTLEQ-------EVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNR 59 (225)
Q Consensus 3 el~q-ele~~Eee~~~le~~yssLQe-------Eve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ 59 (225)
+|.+ +|+-+.+...++-..-.+|++ +.....+++.++..|++.+..|+.+++++-..
T Consensus 343 e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~ 407 (493)
T KOG0804|consen 343 EYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKK 407 (493)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 555555554444444444433 33444556666666666666666665544443
No 166
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=54.86 E-value=82 Score=23.87 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=11.2
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHH
Q psy1302 16 EEIRGNYSTLEQEVQAKNKKLQKIYSK 42 (225)
Q Consensus 16 ~~le~~yssLQeEve~KtkkLkKl~~k 42 (225)
+.+..++.+++.+++....+-+.+-..
T Consensus 32 ~~ld~~~r~l~~~~e~lr~~rN~~sk~ 58 (108)
T PF02403_consen 32 IELDQERRELQQELEELRAERNELSKE 58 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 334444444444444444433333333
No 167
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=54.85 E-value=1.3e+02 Score=25.31 Aligned_cols=44 Identities=16% Similarity=0.434 Sum_probs=33.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1302 41 SKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIEN 84 (225)
Q Consensus 41 ~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~ 84 (225)
..-+.+..++..+.+.+..++.+|...+..|.-+.+-..+-+.+
T Consensus 71 ~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 71 ELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33445567788888999999999999999988887766655444
No 168
>KOG4603|consensus
Probab=54.81 E-value=98 Score=26.92 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1302 29 VQAKNKKLQKIYSKYEEVKQDIQDIMDEFN-----RDRRDLEQSQDELLKDLKLRKLIIEN 84 (225)
Q Consensus 29 ve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~-----~ERedll~tir~l~relkLk~lIId~ 84 (225)
....--++-+|..|++++++++.++..|.. .--++|.+.|.+|.++++=..-=|.+
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~ 141 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKN 141 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555544444444432 23456777777777776655444443
No 169
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=54.77 E-value=1.5e+02 Score=31.10 Aligned_cols=78 Identities=22% Similarity=0.302 Sum_probs=38.5
Q ss_pred HHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 7 ELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNR---DRRDLEQSQDELLKDLKLRKLIIE 83 (225)
Q Consensus 7 ele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~---ERedll~tir~l~relkLk~lIId 83 (225)
.++.-.++.-..+..++-||-+|+..+-+|..-...+.....-|..++.|..+ |..+|-+.++...+++....-=|+
T Consensus 323 hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie 402 (775)
T PF10174_consen 323 HIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIE 402 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444555666666666666655554444444444444444444333 344455555555555544444443
Q ss_pred h
Q psy1302 84 N 84 (225)
Q Consensus 84 ~ 84 (225)
+
T Consensus 403 ~ 403 (775)
T PF10174_consen 403 N 403 (775)
T ss_pred H
Confidence 3
No 170
>PRK14150 heat shock protein GrpE; Provisional
Probab=54.66 E-value=1.2e+02 Score=26.28 Aligned_cols=25 Identities=8% Similarity=0.169 Sum_probs=12.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q psy1302 40 YSKYEEVKQDIQDIMDEFNRDRRDL 64 (225)
Q Consensus 40 ~~kl~~~k~Ei~Dlq~E~~~ERedl 64 (225)
..+|.-+.+|+.....-..+|++++
T Consensus 58 kd~~lR~~AefeN~rkR~~kE~~~~ 82 (193)
T PRK14150 58 RDSVLRARAEVENIRRRAEQDVEKA 82 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555444443
No 171
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=54.63 E-value=29 Score=26.04 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=20.3
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYE 44 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~ 44 (225)
+|..+|..+++|...+.---.||..++-.-|.--+||.....
T Consensus 9 ~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~ 50 (76)
T PF11544_consen 9 ELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLL 50 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556665555555544444444444444444444333333
No 172
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=54.52 E-value=1.1e+02 Score=30.38 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1302 60 DRRDLEQSQDELLKDL 75 (225)
Q Consensus 60 ERedll~tir~l~rel 75 (225)
++..+...+.+|+++|
T Consensus 124 ~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 124 ERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 173
>KOG4643|consensus
Probab=54.45 E-value=42 Score=36.14 Aligned_cols=43 Identities=19% Similarity=0.381 Sum_probs=25.9
Q ss_pred HhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1302 12 EESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM 54 (225)
Q Consensus 12 Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq 54 (225)
+.+..+++++--.|++|.+.|+..|..|...|..+++||.-++
T Consensus 176 ~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klr 218 (1195)
T KOG4643|consen 176 EVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLR 218 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888887555554444444444444433
No 174
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=54.28 E-value=1.9e+02 Score=27.11 Aligned_cols=105 Identities=11% Similarity=0.233 Sum_probs=57.6
Q ss_pred HHHHHHHHhHhhHHHHHhhcCC-------HHHHHHHHHHHHHH--------HHHHHHHHHHhHHHHHHHHHHHHHHH---
Q psy1302 3 EMKQELDKKEESTEEIRGNYST-------LEQEVQAKNKKLQK--------IYSKYEEVKQDIQDIMDEFNRDRRDL--- 64 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yss-------LQeEve~KtkkLkK--------l~~kl~~~k~Ei~Dlq~E~~~ERedl--- 64 (225)
.+.+++.+.+.+..++...|.. ++.+++...+.|++ +...+..+++.+.++......-+.++
T Consensus 258 ~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l 337 (444)
T TIGR03017 258 NLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVLEL 337 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666643 33333333333222 12222233344444444444333332
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhccccccCCccccCC
Q psy1302 65 ---EQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIVP 111 (225)
Q Consensus 65 ---l~tir~l~relkLk~lIId~FIP~ee~~kI~~~a~wdEe~~~W~l~~ 111 (225)
......|.|++.+...+.+.|.-.-+-.+|.... +...|.+=.
T Consensus 338 ~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l~~~~----~~~~~~Vi~ 383 (444)
T TIGR03017 338 NRQRDEMSVLQRDVENAQRAYDAAMQRYTQTRIEAQS----NQTDISILN 383 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCCceEeeC
Confidence 2357788889999999988888877766775432 455666543
No 175
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=54.14 E-value=1.9e+02 Score=26.95 Aligned_cols=44 Identities=20% Similarity=0.477 Sum_probs=27.2
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1302 15 TEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN 58 (225)
Q Consensus 15 ~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~ 58 (225)
.-++.++-..|-+++...-.++-++|.+...++.++..++.+|.
T Consensus 174 ~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~v 217 (294)
T COG1340 174 AREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFV 217 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555666666777777777777777776654
No 176
>PRK00106 hypothetical protein; Provisional
Probab=54.03 E-value=86 Score=31.38 Aligned_cols=32 Identities=13% Similarity=0.290 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1302 26 EQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEF 57 (225)
Q Consensus 26 QeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~ 57 (225)
.++++.+.+.|.+....+...+.++...+.++
T Consensus 117 ee~LekrE~eLe~kekeLe~reeeLee~~~~~ 148 (535)
T PRK00106 117 DENLSSKEKTLESKEQSLTDKSKHIDEREEQV 148 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433
No 177
>KOG0996|consensus
Probab=53.69 E-value=88 Score=34.31 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=6.3
Q ss_pred cchHHHHHHHHcc
Q psy1302 179 PSILSVLQAALQD 191 (225)
Q Consensus 179 ~~~q~~l~~al~~ 191 (225)
|.+..+.=.||++
T Consensus 705 ~~~r~aFYfaLrd 717 (1293)
T KOG0996|consen 705 EKFRPAFYFALRD 717 (1293)
T ss_pred HHHHHHHHHHHhh
Confidence 4444444445544
No 178
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=53.25 E-value=85 Score=29.32 Aligned_cols=71 Identities=23% Similarity=0.390 Sum_probs=55.3
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHH---HHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEV---QAKN-KKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELL 72 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEv---e~Kt-kkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~ 72 (225)
..|++++..-|++...+....+.|..|- +.+. .-+..+...+-.+...|..|.+|-.+..++....+++.+
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt 237 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEIT 237 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999998544 3332 234567788999999999999998888887776655544
No 179
>KOG2129|consensus
Probab=52.88 E-value=2e+02 Score=28.44 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhccccccC
Q psy1302 61 RRDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEES 104 (225)
Q Consensus 61 Redll~tir~l~relkLk~lIId~FIP~ee~~kI~~~a~wdEe~ 104 (225)
|++.+.-+|.|.+++.-...+..+.--.+-.--.-...+||+-.
T Consensus 291 reen~rlQrkL~~e~erRealcr~lsEsesslemdeery~Ne~~ 334 (552)
T KOG2129|consen 291 REENERLQRKLINELERREALCRMLSESESSLEMDEERYLNEFV 334 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Confidence 45555566666666665555554443333222233345666543
No 180
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=52.72 E-value=2.2e+02 Score=28.00 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 51 QDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIE 83 (225)
Q Consensus 51 ~Dlq~E~~~ERedll~tir~l~relkLk~lIId 83 (225)
+++.+.-..||...+..+.++...|+=....++
T Consensus 363 ~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~ 395 (582)
T PF09731_consen 363 KEIKEKVEQERNGRLAKLAELNSRLKALEEALD 395 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444456677666666666666655544443
No 181
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=52.29 E-value=84 Score=22.44 Aligned_cols=43 Identities=16% Similarity=0.332 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy1302 24 TLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQ 66 (225)
Q Consensus 24 sLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~ 66 (225)
++++|+...+.-...+..+|+.+...+.+|..+..+=+.++.+
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677776655566667777777777777777776666555544
No 182
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=51.86 E-value=1.7e+02 Score=25.96 Aligned_cols=33 Identities=15% Similarity=0.361 Sum_probs=14.1
Q ss_pred HHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHH
Q psy1302 41 SKYEEVKQDIQDIMDEF---NRDRRDLEQSQDELLK 73 (225)
Q Consensus 41 ~kl~~~k~Ei~Dlq~E~---~~ERedll~tir~l~r 73 (225)
..|+++.++|..|.... ..||+...+.|..+..
T Consensus 53 eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e 88 (230)
T PF10146_consen 53 EELRQINQDINTLENIIKQAESERNKRQEKIQRLYE 88 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444 3344444444444333
No 183
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=51.66 E-value=57 Score=29.55 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhcccccc
Q psy1302 66 QSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEE 103 (225)
Q Consensus 66 ~tir~l~relkLk~lIId~FIP~ee~~kI~~~a~wdEe 103 (225)
+.+..|..++.+..--.+.. +.++.+++++ |||=
T Consensus 170 erlk~le~E~s~LeE~~~~l--~~ev~~L~~r--~~EL 203 (290)
T COG4026 170 ERLKRLEVENSRLEEMLKKL--PGEVYDLKKR--WDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhc--hhHHHHHHHH--HHHh
Confidence 33344444444433333222 3344555443 5443
No 184
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=51.56 E-value=44 Score=28.07 Aligned_cols=41 Identities=22% Similarity=0.425 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 38 KIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLR 78 (225)
Q Consensus 38 Kl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk 78 (225)
|-..|.+.++-|++.+++.|..+++.+...++++-|+-...
T Consensus 26 ~~~~km~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~~~~ 66 (181)
T TIGR03592 26 KSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEEGVN 66 (181)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCC
Confidence 34456777888888888888888888888888888876644
No 185
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=51.55 E-value=51 Score=29.88 Aligned_cols=49 Identities=24% Similarity=0.400 Sum_probs=36.5
Q ss_pred HhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1302 10 KKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN 58 (225)
Q Consensus 10 ~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~ 58 (225)
.-.+...++.+++..+|.|-+...+.|..+..+|..++.+++.+..|..
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s 180 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS 180 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777788888888888788888888888888888877776655
No 186
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.19 E-value=1e+02 Score=28.00 Aligned_cols=51 Identities=16% Similarity=0.317 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 32 KNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLII 82 (225)
Q Consensus 32 KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lII 82 (225)
..+.++++.+++..+.+|+.+++..-...++.-..+.+.++.+|.....++
T Consensus 55 L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~a 105 (247)
T COG3879 55 LVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLA 105 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHh
Confidence 344556677777777777777777776666555566666666665555544
No 187
>PRK00736 hypothetical protein; Provisional
Probab=51.16 E-value=44 Score=24.11 Aligned_cols=41 Identities=17% Similarity=0.308 Sum_probs=17.6
Q ss_pred HHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Q psy1302 5 KQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEE 45 (225)
Q Consensus 5 ~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~ 45 (225)
+-++.-+|....++.+.-...|.+++..+++|+.|..++++
T Consensus 11 E~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 11 EIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444433
No 188
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=51.02 E-value=46 Score=25.44 Aligned_cols=28 Identities=11% Similarity=0.344 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1302 31 AKNKKLQKIYSKYEEVKQDIQDIMDEFN 58 (225)
Q Consensus 31 ~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~ 58 (225)
....+++.+-..+..+...+.+++.++.
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~ 94 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLK 94 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555544444
No 189
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=50.87 E-value=1.4e+02 Score=29.48 Aligned_cols=67 Identities=13% Similarity=0.356 Sum_probs=47.5
Q ss_pred HHHHhHhhHHHHHhhcCCHHHHH-HHHHHH------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 7 ELDKKEESTEEIRGNYSTLEQEV-QAKNKK------------LQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLK 73 (225)
Q Consensus 7 ele~~Eee~~~le~~yssLQeEv-e~Ktkk------------LkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~r 73 (225)
+++.-++....+...|.+|-.++ +.++++ |+=+...+...+..+.+++.+-.++|-.|-..|+.|..
T Consensus 100 k~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~ 179 (475)
T PRK10361 100 KIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQ 179 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555666777766654 444544 34477788889999999999999999999998888754
No 190
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=50.79 E-value=1.9e+02 Score=28.33 Aligned_cols=47 Identities=6% Similarity=0.206 Sum_probs=23.0
Q ss_pred HHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1302 8 LDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM 54 (225)
Q Consensus 8 le~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq 54 (225)
+.+..++.-.+.+.|.+||.++......-.+|-...+++.++-+.||
T Consensus 132 ~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 132 LAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445555555555555554444445444444444444444
No 191
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=50.53 E-value=27 Score=25.06 Aligned_cols=45 Identities=16% Similarity=0.359 Sum_probs=27.0
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVK 47 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k 47 (225)
+|+-++.=+|....++...-...|.+++..++.++.|..+++++.
T Consensus 8 ~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 8 ELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566666666666666666667777777777777777766665
No 192
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=50.26 E-value=1.1e+02 Score=30.79 Aligned_cols=75 Identities=15% Similarity=0.299 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhcCChHHHHHH
Q psy1302 23 STLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRK--------LIIENFIPIEELKRL 94 (225)
Q Consensus 23 ssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~--------lIId~FIP~ee~~kI 94 (225)
.+-++.++....+++.+.+.++.++.++.++..++........+-+.......+... .+++=|||.+..+.+
T Consensus 211 ~~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~~~~~l~GWvP~~~~~~l 290 (646)
T PRK05771 211 GTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLKTDKTFAIEGWVPEDRVKKL 290 (646)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEeehhHHHHH
Confidence 345677777777777777777777777777766655443322222222222222222 235678998876666
Q ss_pred HHh
Q psy1302 95 EQR 97 (225)
Q Consensus 95 ~~~ 97 (225)
++.
T Consensus 291 ~~~ 293 (646)
T PRK05771 291 KEL 293 (646)
T ss_pred HHH
Confidence 554
No 193
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=50.17 E-value=2.2e+02 Score=26.54 Aligned_cols=96 Identities=25% Similarity=0.388 Sum_probs=58.6
Q ss_pred HHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 5 KQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN---RDRRDLEQSQDELLKDLKLRKLI 81 (225)
Q Consensus 5 ~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~---~ERedll~tir~l~relkLk~lI 81 (225)
...+.+..+.+.++...-+++-++-+.++.+.+.+..+.++++.+-..+..+++ .+|.++-..+.+|-+++.=..--
T Consensus 19 k~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~ 98 (294)
T COG1340 19 KEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEK 98 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455567777777788888888888888888888888766666665544 45555555555554444333333
Q ss_pred HHhc----CChHHHHHHHHhccc
Q psy1302 82 IENF----IPIEELKRLEQRLVY 100 (225)
Q Consensus 82 Id~F----IP~ee~~kI~~~a~w 100 (225)
++.| .|...+.++-.+..|
T Consensus 99 ~~~~~~~~~~~~~ler~i~~Le~ 121 (294)
T COG1340 99 RNEFNLGGRSIKSLEREIERLEK 121 (294)
T ss_pred hhhhhccCCCHHHHHHHHHHHHH
Confidence 4433 445556666555555
No 194
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=49.77 E-value=1.4e+02 Score=30.29 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 35 KLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKD 74 (225)
Q Consensus 35 kLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~re 74 (225)
-+.||...+.+..+-+..|+.+++.=|--|.+.+|.|...
T Consensus 395 ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~ 434 (594)
T PF05667_consen 395 NIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEK 434 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4567777777888888888888888888888888888743
No 195
>KOG0612|consensus
Probab=49.61 E-value=1.7e+02 Score=32.35 Aligned_cols=66 Identities=21% Similarity=0.293 Sum_probs=50.5
Q ss_pred HhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHh-HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 12 EESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQD-IQD-----IMDEFNRDRRDLEQSQDELLKDLKLR 78 (225)
Q Consensus 12 Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~E-i~D-----lq~E~~~ERedll~tir~l~relkLk 78 (225)
-+...++++.++||+...+.++..++|+.. ++....| +.| +...|.+++.-+++...+...|.+..
T Consensus 622 ~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 622 SEIIAELKEEISSLEETLKAGKKELLKVEE-LKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678999999999999999999999888 5555433 333 44567888888888888877777766
No 196
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=49.56 E-value=2e+02 Score=30.01 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1302 57 FNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 57 ~~~ERedll~tir~l~relk 76 (225)
+..||+.|++|+..|.++-.
T Consensus 240 we~Er~~L~~tVq~L~edR~ 259 (739)
T PF07111_consen 240 WEPEREELLETVQHLQEDRD 259 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666655433
No 197
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=49.46 E-value=1.2e+02 Score=23.47 Aligned_cols=35 Identities=9% Similarity=0.424 Sum_probs=17.6
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy1302 18 IRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDI 53 (225)
Q Consensus 18 le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dl 53 (225)
+..+|.+ .++++....++.+...++..++++++.+
T Consensus 27 l~~~~a~-~~~~~~l~~~~~~~~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 27 LRRTYAK-REDIEKLEERLDEHDRRLQALETKLEHL 61 (106)
T ss_pred HHHhhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445555 5556665444444455555544444443
No 198
>KOG0972|consensus
Probab=49.43 E-value=38 Score=31.82 Aligned_cols=49 Identities=18% Similarity=0.476 Sum_probs=31.2
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQD 52 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~D 52 (225)
|-++..+.-.+.-++.++|.-++.-|...|.-|..+...+..+|+||+.
T Consensus 278 l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 278 LMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666677777777777777777666666666666666543
No 199
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=49.42 E-value=93 Score=29.89 Aligned_cols=31 Identities=29% Similarity=0.251 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q psy1302 58 NRDRRDLEQSQDELLKDLKLRKLIIENFIPI 88 (225)
Q Consensus 58 ~~ERedll~tir~l~relkLk~lIId~FIP~ 88 (225)
..+..+++..+.++..++.-..+-|=|++-+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~ 109 (425)
T PRK05431 79 KEEIKALEAELDELEAELEELLLRIPNLPHD 109 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 4455667777777777777766667666654
No 200
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=49.34 E-value=12 Score=30.55 Aligned_cols=58 Identities=17% Similarity=0.409 Sum_probs=25.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhcCCh-HHHHHHHHhcc
Q psy1302 42 KYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK-----LRKLIIENFIPI-EELKRLEQRLV 99 (225)
Q Consensus 42 kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk-----Lk~lIId~FIP~-ee~~kI~~~a~ 99 (225)
.+..+..++.++.+.+.+-..++..-.+.+.++.. ...-++..|||. +.+.++...+.
T Consensus 19 ~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~~~~~ 82 (165)
T PF01025_consen 19 ELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERALEAAK 82 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444444444444444444444332 223334444443 44555554444
No 201
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=49.30 E-value=1.1e+02 Score=26.14 Aligned_cols=38 Identities=16% Similarity=0.421 Sum_probs=20.2
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1302 17 EIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM 54 (225)
Q Consensus 17 ~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq 54 (225)
.++.....+++.++..+..+.+|...|..++..|.+++
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k 132 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELK 132 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555443
No 202
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=49.25 E-value=1.7e+02 Score=26.75 Aligned_cols=35 Identities=11% Similarity=0.323 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1302 24 TLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN 58 (225)
Q Consensus 24 sLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~ 58 (225)
.++.+++.....+..+...+..++.++...+.++.
T Consensus 148 ~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~ 182 (423)
T TIGR01843 148 LILAQIKQLEAELAGLQAQLQALRQQLEVISEELE 182 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444443
No 203
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=49.14 E-value=2.4e+02 Score=27.80 Aligned_cols=35 Identities=29% Similarity=0.494 Sum_probs=22.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy1302 48 QDIQDIMDEFNRDRRDLEQSQD-ELLKDLKLRKLII 82 (225)
Q Consensus 48 ~Ei~Dlq~E~~~ERedll~tir-~l~relkLk~lII 82 (225)
.+..++..+|++++..+.+..+ +|..+|+.....+
T Consensus 307 ~~~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~ 342 (582)
T PF09731_consen 307 ELEEELREEFEREREELEEKYEEELRQELKRQEEAH 342 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455777777777777777644 3455666655554
No 204
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=49.08 E-value=1.9e+02 Score=25.45 Aligned_cols=30 Identities=10% Similarity=0.144 Sum_probs=11.5
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 18 IRGNYSTLEQEVQAKNKKLQKIYSKYEEVK 47 (225)
Q Consensus 18 le~~yssLQeEve~KtkkLkKl~~kl~~~k 47 (225)
.+++.+.+.+|-......++.+...+..++
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~ 69 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLE 69 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444333333333333333333
No 205
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=48.98 E-value=2.2e+02 Score=26.31 Aligned_cols=68 Identities=28% Similarity=0.400 Sum_probs=54.6
Q ss_pred HhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q psy1302 12 EESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRD---RRDLEQSQDELLKDLKLRK 79 (225)
Q Consensus 12 Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~E---Redll~tir~l~relkLk~ 79 (225)
++....|-.+|+.+-.++....+.+.++..+..++..|...++.|+.+- |.-|+.--|+|+++.+...
T Consensus 21 eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lk 91 (309)
T PF09728_consen 21 EEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLK 91 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455668899999999999999999999999999999999999999753 4556666688877776544
No 206
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=48.66 E-value=1.5e+02 Score=25.35 Aligned_cols=52 Identities=19% Similarity=0.390 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q psy1302 25 LEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR-----RDLEQSQDELLKDLK 76 (225)
Q Consensus 25 LQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ER-----edll~tir~l~relk 76 (225)
|.++-+..++-...|...+++.+.+..|+..++...- ..+.+.|++++.+++
T Consensus 39 lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~ 95 (165)
T PF09602_consen 39 LKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLN 95 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566778788888888888889999988877655 677888888776654
No 207
>KOG1962|consensus
Probab=48.02 E-value=2e+02 Score=25.56 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=25.3
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1302 19 RGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDE 56 (225)
Q Consensus 19 e~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E 56 (225)
.++-++|.+|.+.....++||..+++.-..+++-.+..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~ 180 (216)
T KOG1962|consen 143 LENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKK 180 (216)
T ss_pred hhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33445577777777777777777777776666665543
No 208
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=47.78 E-value=35 Score=24.96 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy1302 30 QAKNKKLQKIYSKYEEVKQDIQDIMD 55 (225)
Q Consensus 30 e~KtkkLkKl~~kl~~~k~Ei~Dlq~ 55 (225)
+...+|++||..+--+++.|+.||-+
T Consensus 9 ~eiqkKvrkLqsrAg~akm~LhDLAE 34 (71)
T COG5420 9 EEIQKKVRKLQSRAGQAKMELHDLAE 34 (71)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhc
Confidence 44678899999999999999999975
No 209
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=47.62 E-value=98 Score=28.71 Aligned_cols=54 Identities=17% Similarity=0.280 Sum_probs=29.6
Q ss_pred ChHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1302 1 MIEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM 54 (225)
Q Consensus 1 ~~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq 54 (225)
+++|++++..+.++.-.+...=...-+++......++++..++..++.+...+.
T Consensus 1 l~el~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 54 (378)
T TIGR01554 1 LSELKEQREEIVAEIRSLLDKAEKLEKELTAAALEKEELETDVEKLKEEIKLLE 54 (378)
T ss_pred ChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888887776666652122234444444445555555555544444333
No 210
>PRK04863 mukB cell division protein MukB; Provisional
Probab=47.45 E-value=2e+02 Score=32.44 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 49 DIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLII 82 (225)
Q Consensus 49 Ei~Dlq~E~~~ERedll~tir~l~relkLk~lII 82 (225)
++.+..+.|...-+++...+.++..++.-....+
T Consensus 439 eLe~~LenF~aklee~e~qL~elE~kL~~lea~l 472 (1486)
T PRK04863 439 NAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAH 472 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555544444433
No 211
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=47.39 E-value=2.1e+02 Score=25.55 Aligned_cols=53 Identities=21% Similarity=0.268 Sum_probs=21.1
Q ss_pred HHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy1302 7 ELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNR 59 (225)
Q Consensus 7 ele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ 59 (225)
+++..+.....++.++..++..+......+..+...+..++..+...+.+|+|
T Consensus 81 ~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r 133 (334)
T TIGR00998 81 ALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRR 133 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33333333333444444333333333333334444444444444444444433
No 212
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=47.38 E-value=1.4e+02 Score=26.57 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1302 59 RDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 59 ~ERedll~tir~l~relk 76 (225)
.+|+.|...+++.+.++.
T Consensus 75 eEk~~Le~e~~e~~~~i~ 92 (246)
T PF00769_consen 75 EEKEQLEQELREAEAEIA 92 (246)
T ss_dssp ------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555444443
No 213
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=47.22 E-value=1.8e+02 Score=28.88 Aligned_cols=79 Identities=16% Similarity=0.331 Sum_probs=45.5
Q ss_pred HHHHHhHhhHHHHHhhcCCHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 6 QELDKKEESTEEIRGNYSTLEQEVQAK-------NKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLR 78 (225)
Q Consensus 6 qele~~Eee~~~le~~yssLQeEve~K-------tkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk 78 (225)
+.+..-++....+++...++.++++.. +..+..|..+|+.++..+-+....|..--..|++.+..+..++.=.
T Consensus 101 ~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f 180 (560)
T PF06160_consen 101 QAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEF 180 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555544333 4455667777777777777777666666666666666666666555
Q ss_pred HHHHHh
Q psy1302 79 KLIIEN 84 (225)
Q Consensus 79 ~lIId~ 84 (225)
.-+.++
T Consensus 181 ~~lt~~ 186 (560)
T PF06160_consen 181 EELTEN 186 (560)
T ss_pred HHHHHC
Confidence 555544
No 214
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=46.99 E-value=2.1e+02 Score=25.40 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 34 KKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLI 81 (225)
Q Consensus 34 kkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lI 81 (225)
+.++|+..|+..++.++.....+|+.--..|..+-..-.++.+-...+
T Consensus 154 ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~~~~c~~ 201 (240)
T cd07672 154 KQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIREDWQKEHVKACEF 201 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777777777766666666666666665533333
No 215
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=46.86 E-value=1.7e+02 Score=25.22 Aligned_cols=83 Identities=17% Similarity=0.235 Sum_probs=49.3
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLI 81 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lI 81 (225)
+-||.+|..-|=++...+.+|.+|-.|+..-.+.+.+-...-.....+...-..++...-.....-..-|.|+|......
T Consensus 7 K~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRkm 86 (178)
T PF14073_consen 7 KNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMRKM 86 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999886644444322211111222222223334444444444555666666665555
Q ss_pred HHh
Q psy1302 82 IEN 84 (225)
Q Consensus 82 Id~ 84 (225)
|.+
T Consensus 87 v~~ 89 (178)
T PF14073_consen 87 VES 89 (178)
T ss_pred HHH
Confidence 544
No 216
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=46.86 E-value=81 Score=25.34 Aligned_cols=54 Identities=17% Similarity=0.324 Sum_probs=30.6
Q ss_pred HHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy1302 6 QELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNR 59 (225)
Q Consensus 6 qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ 59 (225)
.+.+.-.+..+.++..+..+..++..+...++.|...|.....+...+..-|.-
T Consensus 41 ~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~ 94 (150)
T PF07200_consen 41 AENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSP 94 (150)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 334444445555666666666666666666666666666666666666655553
No 217
>KOG0239|consensus
Probab=46.73 E-value=2.2e+02 Score=29.25 Aligned_cols=57 Identities=18% Similarity=0.351 Sum_probs=36.9
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 15 TEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDEL 71 (225)
Q Consensus 15 ~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l 71 (225)
...++...++..+++.....++..+..++..++.+...++.+++.....+-..+..|
T Consensus 229 ~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L 285 (670)
T KOG0239|consen 229 IKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDL 285 (670)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666667777777777777777777777777777766555554443333
No 218
>KOG0612|consensus
Probab=46.71 E-value=1.7e+02 Score=32.32 Aligned_cols=38 Identities=11% Similarity=0.311 Sum_probs=21.1
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy1302 18 IRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMD 55 (225)
Q Consensus 18 le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~ 55 (225)
++..|+-.++.+.....++++|.+.+++.+.|+++++.
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~ 529 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQK 529 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555666666666666665533
No 219
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=46.62 E-value=1e+02 Score=21.72 Aligned_cols=46 Identities=20% Similarity=0.362 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1302 33 NKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENF 85 (225)
Q Consensus 33 tkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~F 85 (225)
..++-++...+..++.|++++.++ -+++.++++. =+.|+..+-..+
T Consensus 6 En~~~~~~~~i~tvk~en~~i~~~----ve~i~envk~---ll~lYE~Vs~~i 51 (55)
T PF05377_consen 6 ENELPRIESSINTVKKENEEISES----VEKIEENVKD---LLSLYEVVSNQI 51 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHccC
Confidence 344455555566666666665543 3345555533 356666665443
No 220
>PRK14159 heat shock protein GrpE; Provisional
Probab=46.15 E-value=1.8e+02 Score=24.81 Aligned_cols=60 Identities=10% Similarity=0.267 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh-HHHHHHHH
Q psy1302 28 EVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPI-EELKRLEQ 96 (225)
Q Consensus 28 Eve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~-ee~~kI~~ 96 (225)
+++...++++.+..+|.-+.+|+.....-..+|+++....- ..-++..|+|. +.+++..+
T Consensus 31 ~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a---------~~~~~~~LLpV~DnlerAl~ 91 (176)
T PRK14159 31 EQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYA---------NESFAKDLLDVLDALEAAVN 91 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhHHhHHHHHHh
Confidence 44556666777777777777777777777777776654322 22345566664 56666554
No 221
>PRK14156 heat shock protein GrpE; Provisional
Probab=46.05 E-value=1.3e+02 Score=25.68 Aligned_cols=63 Identities=19% Similarity=0.381 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh-HHHHHHHH
Q psy1302 25 LEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPI-EELKRLEQ 96 (225)
Q Consensus 25 LQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~-ee~~kI~~ 96 (225)
+..+++...++++.+..+|.-+.+|+.....-.++|++++...- ..-++..|+|. +.+++...
T Consensus 32 ~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a---------~~~~~~~LLpVlDnLerAl~ 95 (177)
T PRK14156 32 EKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYR---------SQDLAKAILPSLDNLERALA 95 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhHHhHHHHHHh
Confidence 33344455555555555555555555555555555555443221 23445666664 56666554
No 222
>PF14282 FlxA: FlxA-like protein
Probab=45.96 E-value=1.1e+02 Score=23.68 Aligned_cols=53 Identities=11% Similarity=0.233 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 24 TLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 24 sLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
+....++...++++.|..+|+.+...-..-.++-...++.|...|..|..+|.
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIA 68 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666652111112334556666666777776665
No 223
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=45.95 E-value=99 Score=21.40 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=13.3
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 16 EEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQ 48 (225)
Q Consensus 16 ~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~ 48 (225)
..++..+..|+.+.+.....+..|...+..++.
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444433333
No 224
>KOG0447|consensus
Probab=45.87 E-value=91 Score=32.11 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhc
Q psy1302 33 NKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDL-----------KLRKLIIENF 85 (225)
Q Consensus 33 tkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~rel-----------kLk~lIId~F 85 (225)
.|+--++..+++.++.||-..|..||++-|-|+...++|.+=| +|+..+||++
T Consensus 225 ~K~~vs~~e~i~~LQeE~l~tQ~kYQreLErlEKENkeLr~lll~kd~k~i~~kklKkSLIDMY 288 (980)
T KOG0447|consen 225 QKRKVSDKEKIDQLQEELLHTQLKYQRILERLEKENKELRKLVLQKDDKGIHHRKLKKSLIDMY 288 (980)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccchhhHHHHHHHHHHHHH
Confidence 3444567788888999999999999999999998888887432 5666777765
No 225
>KOG2264|consensus
Probab=45.82 E-value=1e+02 Score=31.66 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=34.5
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEF 57 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~ 57 (225)
+++.+=++.--.|..+++.+-..|+-|++..+.|+..|+..+-+.+.|+..|..+.
T Consensus 82 ~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~i 137 (907)
T KOG2264|consen 82 REQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEI 137 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Confidence 34555555556667777777777777777666666666665555555555554443
No 226
>KOG4673|consensus
Probab=45.76 E-value=1.3e+02 Score=31.53 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 35 KLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 35 kLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
++-++...|-.++.|+.-++.++.+ ++..+|.+.+.++
T Consensus 726 r~~~~~~e~~~~qeE~~~l~~r~~~----le~e~r~~k~~~~ 763 (961)
T KOG4673|consen 726 RAAENRQEYLAAQEEADTLEGRANQ----LEVEIRELKRKHK 763 (961)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3334444444555555555554442 4444554444433
No 227
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=45.70 E-value=1.3e+02 Score=25.46 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=10.2
Q ss_pred HHHhhcCCHHHHHHHHHHHHHH
Q psy1302 17 EIRGNYSTLEQEVQAKNKKLQK 38 (225)
Q Consensus 17 ~le~~yssLQeEve~KtkkLkK 38 (225)
.+.-.|.+++.++..|...+.|
T Consensus 132 ~~~~~~~~a~~~l~kkk~~~~k 153 (236)
T PF09325_consen 132 KKLIEYQNAEKELQKKKAQLEK 153 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444555555555444433
No 228
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=45.62 E-value=3.7e+02 Score=27.91 Aligned_cols=22 Identities=14% Similarity=0.431 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1302 50 IQDIMDEFNRDRRDLEQSQDEL 71 (225)
Q Consensus 50 i~Dlq~E~~~ERedll~tir~l 71 (225)
+.+-+.+|..|-+.+.+.++.+
T Consensus 630 LS~AEr~~~~EL~~~~~~l~~l 651 (717)
T PF10168_consen 630 LSEAEREFKKELERMKDQLQDL 651 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 229
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=45.24 E-value=1.7e+02 Score=25.32 Aligned_cols=43 Identities=19% Similarity=0.296 Sum_probs=29.6
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy1302 17 EIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNR 59 (225)
Q Consensus 17 ~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ 59 (225)
++-.--.+-.+||.....+|++...++..++..+.|...+-.+
T Consensus 58 ~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k 100 (194)
T PF15619_consen 58 ELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLK 100 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345556777778888888888777777777777766554
No 230
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=45.24 E-value=1.9e+02 Score=26.14 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=13.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy1302 42 KYEEVKQDIQDIMDEFNRDRRDLEQSQ 68 (225)
Q Consensus 42 kl~~~k~Ei~Dlq~E~~~ERedll~ti 68 (225)
+-.+.+..+..|.+....+|+.+...+
T Consensus 237 ~~~~~ee~~~~L~ekme~e~~~~~~e~ 263 (297)
T PF02841_consen 237 QERSYEEHIKQLKEKMEEEREQLLQEQ 263 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555555554433
No 231
>PRK14162 heat shock protein GrpE; Provisional
Probab=44.84 E-value=2.1e+02 Score=24.86 Aligned_cols=48 Identities=17% Similarity=0.314 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcC
Q psy1302 39 IYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK-LRKLIIENFI 86 (225)
Q Consensus 39 l~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk-Lk~lIId~FI 86 (225)
+..++..++.++.++.+.+.|-.-|+..-.+...|+.. ++..-+.+|+
T Consensus 44 l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~ 92 (194)
T PRK14162 44 LEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLA 92 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555666555555555555555533 2233344444
No 232
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=44.73 E-value=1.4e+02 Score=25.84 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=21.2
Q ss_pred HhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy1302 12 EESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDI 53 (225)
Q Consensus 12 Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dl 53 (225)
+..+..+...+..+|.++....+.+.|.+.+|..+..|....
T Consensus 104 ~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a 145 (251)
T cd07653 104 RQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKA 145 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555554444433
No 233
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=44.62 E-value=62 Score=26.18 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q psy1302 30 QAKNKKLQKIYSKYEEVKQDI 50 (225)
Q Consensus 30 e~KtkkLkKl~~kl~~~k~Ei 50 (225)
....+.-+++..+|+.++++|
T Consensus 87 ~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 87 KTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 234
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=44.58 E-value=1e+02 Score=25.18 Aligned_cols=13 Identities=8% Similarity=0.210 Sum_probs=4.9
Q ss_pred HHHHhHHHHHHHH
Q psy1302 45 EVKQDIQDIMDEF 57 (225)
Q Consensus 45 ~~k~Ei~Dlq~E~ 57 (225)
.++.||...+..+
T Consensus 45 lLq~e~~~~e~~l 57 (160)
T PF13094_consen 45 LLQEEIEKEEAAL 57 (160)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 235
>KOG4360|consensus
Probab=44.48 E-value=1.8e+02 Score=29.33 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=15.1
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQ 37 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLk 37 (225)
++++|+.+-.+.....+.-+.|--++-.+.+|+|
T Consensus 217 ~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k 250 (596)
T KOG4360|consen 217 GQEELQSKTKELSRQQEENSKLLSQLVDLQKKIK 250 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3444444444444444444444444444444444
No 236
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=44.28 E-value=1.8e+02 Score=24.00 Aligned_cols=85 Identities=14% Similarity=0.331 Sum_probs=37.2
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDEL---LKDLKLRKL 80 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l---~relkLk~l 80 (225)
|.++|+.-++....+....-|-+.++......+..+-..++.+..|+..+.. |++.|....... -.+|.-.+.
T Consensus 29 LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s----Ek~~L~k~lq~~q~kv~eLE~~~~ 104 (140)
T PF10473_consen 29 LERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRS----EKENLDKELQKKQEKVSELESLNS 104 (140)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444444444444444444444444444444444444444444444444443 333333222222 333444444
Q ss_pred HHHhcCChHHHH
Q psy1302 81 IIENFIPIEELK 92 (225)
Q Consensus 81 IId~FIP~ee~~ 92 (225)
=+.++|-.-+.+
T Consensus 105 ~~~~~l~~~E~e 116 (140)
T PF10473_consen 105 SLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHH
Confidence 445555544433
No 237
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=44.25 E-value=2.5e+02 Score=30.63 Aligned_cols=10 Identities=30% Similarity=0.471 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy1302 63 DLEQSQDELL 72 (225)
Q Consensus 63 dll~tir~l~ 72 (225)
++.+...++.
T Consensus 707 ~~~~~~~e~~ 716 (1201)
T PF12128_consen 707 ELKEQLKELR 716 (1201)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 238
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=44.06 E-value=1.1e+02 Score=29.44 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q psy1302 60 DRRDLEQSQDELLKDLKLRKLIIENFIPI 88 (225)
Q Consensus 60 ERedll~tir~l~relkLk~lIId~FIP~ 88 (225)
+...+...+.++..++.-..+-|=|++-+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~lPN~~~~ 112 (418)
T TIGR00414 84 ELTELSAALKALEAELQDKLLSIPNIPHE 112 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 44455555566666666555556666543
No 239
>KOG0977|consensus
Probab=43.93 E-value=2.1e+02 Score=28.83 Aligned_cols=73 Identities=21% Similarity=0.360 Sum_probs=36.5
Q ss_pred HHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHH--------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1302 5 KQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQK--------------IYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDE 70 (225)
Q Consensus 5 ~qele~~Eee~~~le~~yssLQeEve~KtkkLkK--------------l~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~ 70 (225)
+.++..-.++..++..+|...+.++..-.++++- +...++.+..|+.+|..|..+-+.+|...--+
T Consensus 112 e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 112 EIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3444444445555555555554444443333331 22334444555556666666666666665555
Q ss_pred HHHHHHH
Q psy1302 71 LLKDLKL 77 (225)
Q Consensus 71 l~relkL 77 (225)
+..|.-|
T Consensus 192 ld~Etll 198 (546)
T KOG0977|consen 192 LDDETLL 198 (546)
T ss_pred HHHHHHH
Confidence 5555433
No 240
>KOG0804|consensus
Probab=43.85 E-value=3.4e+02 Score=26.96 Aligned_cols=20 Identities=15% Similarity=0.464 Sum_probs=7.7
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q psy1302 42 KYEEVKQDIQDIMDEFNRDR 61 (225)
Q Consensus 42 kl~~~k~Ei~Dlq~E~~~ER 61 (225)
++++...-+++++.|-..+|
T Consensus 383 k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 383 KLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333444443333333
No 241
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=43.78 E-value=37 Score=26.69 Aligned_cols=32 Identities=22% Similarity=0.453 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1302 23 STLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM 54 (225)
Q Consensus 23 ssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq 54 (225)
.++++++.......+++..+++..+.++.-++
T Consensus 83 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 83 EQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444333
No 242
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=43.57 E-value=84 Score=29.51 Aligned_cols=55 Identities=20% Similarity=0.354 Sum_probs=40.1
Q ss_pred HHHHHHHhH---hhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1302 4 MKQELDKKE---ESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN 58 (225)
Q Consensus 4 l~qele~~E---ee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~ 58 (225)
|.-||.++. +...+++..-..|++++..|++.|..|-.+|+.+..=..-+|..+.
T Consensus 96 L~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~ 153 (355)
T PF09766_consen 96 LEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLG 153 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhC
Confidence 344444444 5567777778888888888888888888888888877777777663
No 243
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=42.88 E-value=1.5e+02 Score=22.60 Aligned_cols=56 Identities=18% Similarity=0.361 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 24 TLEQEVQAKNKKLQKIYSKYEEVKQDIQD------IMDEFNRDRRDLEQSQDELLKDLKLRK 79 (225)
Q Consensus 24 sLQeEve~KtkkLkKl~~kl~~~k~Ei~D------lq~E~~~ERedll~tir~l~relkLk~ 79 (225)
|++.|++...++|..++..+..+..-+.+ -....+.|...+..-....+++|+...
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lr 63 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLR 63 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 56778888888888888888888766644 334445555555555556666666543
No 244
>PRK14143 heat shock protein GrpE; Provisional
Probab=42.72 E-value=1.4e+02 Score=26.69 Aligned_cols=65 Identities=14% Similarity=0.373 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCh-HHHHHHHHh
Q psy1302 33 NKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKL-----RKLIIENFIPI-EELKRLEQR 97 (225)
Q Consensus 33 tkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkL-----k~lIId~FIP~-ee~~kI~~~ 97 (225)
+..+..|..++..++.++.++...|.|-.-|+..-.+...|+..- ..-++..|+|. +.+++....
T Consensus 66 ~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~ 136 (238)
T PRK14143 66 AARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQ 136 (238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence 444555666677777777777777777777777766666665532 23345666664 566666543
No 245
>KOG4360|consensus
Probab=42.61 E-value=1.5e+02 Score=29.88 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=29.0
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1302 17 EIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDE 56 (225)
Q Consensus 17 ~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E 56 (225)
+...+-.++|+|++.||+.+...+...-.+.++|.|++++
T Consensus 209 dtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk 248 (596)
T KOG4360|consen 209 DTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKK 248 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4455667889999999998887777666666666666643
No 246
>PRK00846 hypothetical protein; Provisional
Probab=42.51 E-value=71 Score=23.90 Aligned_cols=15 Identities=0% Similarity=-0.203 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy1302 34 KKLQKIYSKYEEVKQ 48 (225)
Q Consensus 34 kkLkKl~~kl~~~k~ 48 (225)
+.|.+|...++.+..
T Consensus 41 ~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 41 LTGARNAELIRHLLE 55 (77)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 247
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=42.47 E-value=1.5e+02 Score=29.54 Aligned_cols=17 Identities=12% Similarity=0.472 Sum_probs=6.8
Q ss_pred HHHHhhcCCHHHHHHHH
Q psy1302 16 EEIRGNYSTLEQEVQAK 32 (225)
Q Consensus 16 ~~le~~yssLQeEve~K 32 (225)
..+++.|..+.+.+..+
T Consensus 358 ~~Le~~~~~~~~~i~~~ 374 (569)
T PRK04778 358 ESLEKQYDEITERIAEQ 374 (569)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 33444444444444333
No 248
>PLN02678 seryl-tRNA synthetase
Probab=42.26 E-value=1.5e+02 Score=28.89 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q psy1302 59 RDRRDLEQSQDELLKDLKLRKLIIENFIPI 88 (225)
Q Consensus 59 ~ERedll~tir~l~relkLk~lIId~FIP~ 88 (225)
.+...+...++++..++.-..+-|=|++-+
T Consensus 85 ~ei~~le~~~~~~~~~l~~~~~~iPNi~~~ 114 (448)
T PLN02678 85 KEITEKEAEVQEAKAALDAKLKTIGNLVHD 114 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 344555555556666665555555555544
No 249
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=42.26 E-value=59 Score=25.54 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=17.8
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1302 16 EEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDI 50 (225)
Q Consensus 16 ~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei 50 (225)
..+++...+++++.+...+++++..++++.++.|+
T Consensus 83 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 83 EQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555555555555555555555555555443
No 250
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=42.24 E-value=1.1e+02 Score=30.32 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=15.0
Q ss_pred HHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q psy1302 42 KYEEVKQDIQDIMDEFN---RDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 42 kl~~~k~Ei~Dlq~E~~---~ERedll~tir~l~relk 76 (225)
+..+++.+|.+++.|-+ +.++++...|.+|+.+++
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~ 114 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNA 114 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 33333444444443333 444444444444444443
No 251
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=42.18 E-value=2.4e+02 Score=26.70 Aligned_cols=12 Identities=8% Similarity=0.595 Sum_probs=4.3
Q ss_pred HHHHHHhHHHHH
Q psy1302 43 YEEVKQDIQDIM 54 (225)
Q Consensus 43 l~~~k~Ei~Dlq 54 (225)
|++++.++.+++
T Consensus 275 Yr~~~~~ls~~~ 286 (359)
T PF10498_consen 275 YRSAQDELSEVQ 286 (359)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 252
>PRK00846 hypothetical protein; Provisional
Probab=42.15 E-value=1.3e+02 Score=22.49 Aligned_cols=35 Identities=9% Similarity=0.158 Sum_probs=14.4
Q ss_pred HhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 12 EESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEV 46 (225)
Q Consensus 12 Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~ 46 (225)
|....++.+.-...|.+++..+++|+-|..+++++
T Consensus 26 e~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 26 EQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333334444444444444444444443
No 253
>PF11418 Scaffolding_pro: Phi29 scaffolding protein; InterPro: IPR024374 This protein is also referred to as Gp7. The protein contains a DNA-binding function and may have a role in mediating the structural transition from prohead to mature virus and also scaffold release [].Gp7 is arranged within the capsid as a series of concentric shells [].; PDB: 1NOH_C 1NO4_C 3MTU_E 3OA7_A.
Probab=41.73 E-value=1.6e+02 Score=22.73 Aligned_cols=49 Identities=16% Similarity=0.415 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy1302 28 EVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNR---DRRDLEQSQDELLKDLK 76 (225)
Q Consensus 28 Eve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~---ERedll~tir~l~relk 76 (225)
+-..+|.-|.++...|-+.-.|..|+.+-++. +.+||.-....|=+++-
T Consensus 20 ~~sErTeaLqqlr~~~~sf~sEy~dlT~~~eKl~aek~DL~vsNskLFrQ~~ 71 (97)
T PF11418_consen 20 TESERTEALQQLRESYTSFHSEYEDLTEALEKLTAEKEDLIVSNSKLFRQHG 71 (97)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhC
Confidence 34568888999999999999999999888775 56677766666665544
No 254
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=41.58 E-value=2e+02 Score=31.40 Aligned_cols=51 Identities=14% Similarity=0.343 Sum_probs=27.1
Q ss_pred HhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy1302 12 EESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62 (225)
Q Consensus 12 Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERe 62 (225)
|+........|..+..++...+..++....+++.++.+...++.++...++
T Consensus 627 e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 677 (1201)
T PF12128_consen 627 EKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKE 677 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555555555555555555544433
No 255
>KOG0964|consensus
Probab=41.53 E-value=1.9e+02 Score=31.49 Aligned_cols=76 Identities=22% Similarity=0.403 Sum_probs=0.0
Q ss_pred ChHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHH------------------------------HHHHHHHhH
Q psy1302 1 MIEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYS------------------------------KYEEVKQDI 50 (225)
Q Consensus 1 ~~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~------------------------------kl~~~k~Ei 50 (225)
+..+..++.+++++...++-+|++|++|-+...++|.+|.. +|..+=.+.
T Consensus 330 l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ 409 (1200)
T KOG0964|consen 330 LQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDT 409 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 51 QDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 51 ~Dlq~E~~~ERedll~tir~l~relk 76 (225)
.....--+.|++++.....+..-+++
T Consensus 410 ke~e~~lq~e~~~~e~~l~~~~e~i~ 435 (1200)
T KOG0964|consen 410 KEQENILQKEIEDLESELKEKLEEIK 435 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
No 256
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=41.43 E-value=2.8e+02 Score=25.36 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhcCCh
Q psy1302 61 RRDLEQSQDELLKDLKLRKLI-IENFIPI 88 (225)
Q Consensus 61 Redll~tir~l~relkLk~lI-Id~FIP~ 88 (225)
|--+++....|+.||+-.+.+ +..|==-
T Consensus 220 RPAfmdEyEklE~EL~~lY~~Y~~kfRNl 248 (267)
T PF10234_consen 220 RPAFMDEYEKLEEELQKLYEIYVEKFRNL 248 (267)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344445555555555433332 4444333
No 257
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.32 E-value=79 Score=28.64 Aligned_cols=72 Identities=14% Similarity=0.289 Sum_probs=37.0
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHh
Q psy1302 18 IRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQR 97 (225)
Q Consensus 18 le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~ee~~kI~~~ 97 (225)
+...|++...+...-++.+ +|...+.+++....+|+. |+++|...+....+.-.=..-.|++ +++++..-
T Consensus 35 ~a~~~q~~k~~~~~~~r~~-~L~~e~~s~Q~~~~~L~~----ev~~~~~~~~s~~~~~~t~~~~ie~-----~l~~l~~~ 104 (247)
T COG3879 35 LAAVFQTSKGESVRRARDL-DLVKELRSLQKKVNTLAA----EVEDLENKLDSVRRSVLTDDAALED-----RLEKLRML 104 (247)
T ss_pred HHHHHhhccCcchhhhhhh-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHhHHHHHHH-----HHHHHHHH
Confidence 3445555555555555555 555555555555555543 4555555555555433333444444 55555544
Q ss_pred cc
Q psy1302 98 LV 99 (225)
Q Consensus 98 a~ 99 (225)
+=
T Consensus 105 aG 106 (247)
T COG3879 105 AG 106 (247)
T ss_pred hc
Confidence 43
No 258
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=41.05 E-value=3.1e+02 Score=28.80 Aligned_cols=52 Identities=21% Similarity=0.420 Sum_probs=42.4
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM 54 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq 54 (225)
++..+++..+.+...++..+.+.++.++...-+|+-+..++..++.++...+
T Consensus 593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~k 644 (769)
T PF05911_consen 593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAK 644 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888889998888888888888888888888888877777443
No 259
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=41.03 E-value=2.4e+02 Score=24.39 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=20.6
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKL 36 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQeEve~KtkkL 36 (225)
.++..+...-.+......+|..+-.+.+..+.++
T Consensus 116 kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~ 149 (251)
T cd07653 116 KLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKY 149 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666667777777776665444333
No 260
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=40.90 E-value=2.6e+02 Score=27.24 Aligned_cols=28 Identities=11% Similarity=0.260 Sum_probs=14.5
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEV 29 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEv 29 (225)
.+++.+|++.+.+...++..-+.++..+
T Consensus 74 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 74 AELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556655555555555444444433
No 261
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=40.79 E-value=2.2e+02 Score=25.29 Aligned_cols=16 Identities=19% Similarity=0.127 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1302 60 DRRDLEQSQDELLKDL 75 (225)
Q Consensus 60 ERedll~tir~l~rel 75 (225)
++..|+..|.++..+.
T Consensus 61 DIn~lE~iIkqa~~er 76 (230)
T PF10146_consen 61 DINTLENIIKQAESER 76 (230)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555554444443
No 262
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=40.64 E-value=1.2e+02 Score=27.18 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q psy1302 34 KKLQKIYSKYEEVKQDIQDIMDE 56 (225)
Q Consensus 34 kkLkKl~~kl~~~k~Ei~Dlq~E 56 (225)
..+-.|...+..+++||.+|+..
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~ 76 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQ 76 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhH
Confidence 33335566666666666666543
No 263
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=40.64 E-value=1.7e+02 Score=28.18 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q psy1302 27 QEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNR------DRRDLEQSQDELLKDLKLRK 79 (225)
Q Consensus 27 eEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~------ERedll~tir~l~relkLk~ 79 (225)
+++-...++.+++..++.+++.+.+.+..++.. +.+.+....+++..+++-..
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 86 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALE 86 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555543 34455555555555554443
No 264
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=40.48 E-value=1.9e+02 Score=24.06 Aligned_cols=50 Identities=16% Similarity=0.334 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 25 LEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDL 75 (225)
Q Consensus 25 LQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~rel 75 (225)
...+++.+...++.+...|..+...|.+|... ..+-++|-..|..|..+.
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~-~~d~eeLk~~i~~lq~~~ 67 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKS-AKDNEELKKQIEELQAKN 67 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHH
Confidence 44455555555666666666666666666652 223344444444444433
No 265
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=40.42 E-value=3.5e+02 Score=28.38 Aligned_cols=73 Identities=21% Similarity=0.320 Sum_probs=37.1
Q ss_pred HHHhhcCCHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCChH
Q psy1302 17 EIRGNYSTLEQEVQAKNKKLQK---IYSKYEEVKQDIQDIMDEFNRDR--RDLEQSQDELLKDLKLRKLIIENFIPIE 89 (225)
Q Consensus 17 ~le~~yssLQeEve~KtkkLkK---l~~kl~~~k~Ei~Dlq~E~~~ER--edll~tir~l~relkLk~lIId~FIP~e 89 (225)
.+...|..+.++++...+++.. .-.++.....++..+..+...-- -.....++..-....+...+..+|++.-
T Consensus 692 ~~~~el~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 769 (908)
T COG0419 692 QLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLEELREKLGKAGLRADILRNLLAQI 769 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4566666666666555555544 33344444444444444433322 2334444444444445666677777753
No 266
>PRK14158 heat shock protein GrpE; Provisional
Probab=40.37 E-value=1.8e+02 Score=25.33 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 35 KLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKL 77 (225)
Q Consensus 35 kLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkL 77 (225)
.+..+..++..++.++.++.+.|.|-.-|+..-.+...||..-
T Consensus 41 ~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~ 83 (194)
T PRK14158 41 RIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEE 83 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666667777777777777777777666666666543
No 267
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=40.24 E-value=58 Score=25.91 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q psy1302 33 NKKLQKIYSKYEEVKQDIQ 51 (225)
Q Consensus 33 tkkLkKl~~kl~~~k~Ei~ 51 (225)
..||.|-..||..++.|+.
T Consensus 95 ~~KI~K~~~KL~ea~~eL~ 113 (115)
T PF06476_consen 95 SDKIAKRQKKLAEAKAELK 113 (115)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4555555556666665554
No 268
>KOG0963|consensus
Probab=39.51 E-value=4e+02 Score=27.39 Aligned_cols=80 Identities=16% Similarity=0.258 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh----HHHHH------HHHhc
Q psy1302 29 VQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPI----EELKR------LEQRL 98 (225)
Q Consensus 29 ve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~----ee~~k------I~~~a 98 (225)
++.+.-.|...-.-+..+-.+|+-++.-+..+|+..-.+|..|.++++=+.-+|+-.--. .+.+. |.+..
T Consensus 280 i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~i 359 (629)
T KOG0963|consen 280 IDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKAI 359 (629)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHh
Confidence 455555555556667778889999999999999999999999999999999888654332 22232 33344
Q ss_pred ccc--ccCCccc
Q psy1302 99 VYD--EESSQWN 108 (225)
Q Consensus 99 ~wd--Ee~~~W~ 108 (225)
.|. ++...|.
T Consensus 360 ef~~se~a~~~~ 371 (629)
T KOG0963|consen 360 EFGDSEEANDED 371 (629)
T ss_pred hcCCcccccccc
Confidence 554 6777785
No 269
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=39.43 E-value=1.6e+02 Score=21.89 Aligned_cols=40 Identities=5% Similarity=0.252 Sum_probs=21.6
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKY 43 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl 43 (225)
+..+....+.....++..-..+++.++.....+...|..|
T Consensus 12 l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l 51 (127)
T smart00502 12 LRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDEL 51 (127)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555544444
No 270
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=39.37 E-value=1.7e+02 Score=23.81 Aligned_cols=38 Identities=16% Similarity=0.358 Sum_probs=18.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy1302 22 YSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNR 59 (225)
Q Consensus 22 yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ 59 (225)
-.-|++|++....-+.+.+..+++++..+..+..+...
T Consensus 43 l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 43 LELLQEEIEKEEAALERDYEYLQELEKNAKALEREREE 80 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555544444443
No 271
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=39.35 E-value=1.9e+02 Score=23.53 Aligned_cols=62 Identities=21% Similarity=0.405 Sum_probs=39.2
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 17 EIRGNYSTLEQEVQAKNKKLQKIYSKYEEVK-QDIQDIMDEFNRDRRDLEQSQDELLKDLKLR 78 (225)
Q Consensus 17 ~le~~yssLQeEve~KtkkLkKl~~kl~~~k-~Ei~Dlq~E~~~ERedll~tir~l~relkLk 78 (225)
++...-+.+..|.....-..+++-+..+..- .-+..++..|..+|..+++..+.+.-++.-.
T Consensus 24 ~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv 86 (131)
T PF11068_consen 24 ELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQV 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555444555444322111 5677889999999999999999998887643
No 272
>KOG0980|consensus
Probab=39.34 E-value=3.2e+02 Score=29.32 Aligned_cols=6 Identities=17% Similarity=0.041 Sum_probs=2.6
Q ss_pred cCCCCC
Q psy1302 162 FDICPN 167 (225)
Q Consensus 162 Ld~p~r 167 (225)
||-|..
T Consensus 608 ld~P~~ 613 (980)
T KOG0980|consen 608 LDSPLH 613 (980)
T ss_pred cCCCcc
Confidence 444443
No 273
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=39.19 E-value=2.1e+02 Score=23.23 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=21.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 47 KQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLI 81 (225)
Q Consensus 47 k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lI 81 (225)
+.+.+.+-..|..-+-+|...|++.++.+--...|
T Consensus 88 k~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe~i 122 (126)
T PF09403_consen 88 KDEYKELLKKYKDLLNKLDKEIAEQEQIIDNFEKI 122 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666555554
No 274
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=39.11 E-value=1.9e+02 Score=30.17 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=34.8
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 17 EIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLK 73 (225)
Q Consensus 17 ~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~r 73 (225)
.++.+|.....||......||.|..+|...+.-..+-...+..+.++|.+-+..+.+
T Consensus 356 iLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek 412 (717)
T PF09730_consen 356 ILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEK 412 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777777777666665555555454445555443333333
No 275
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=39.02 E-value=1.7e+02 Score=22.25 Aligned_cols=64 Identities=23% Similarity=0.368 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------hHHHHHHHHhc
Q psy1302 25 LEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIP------IEELKRLEQRL 98 (225)
Q Consensus 25 LQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP------~ee~~kI~~~a 98 (225)
|++|.+...++|.....+++.+++...-+...=-.+| +.-|=-+-.|++.|+| .+++..+...+
T Consensus 6 l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k~eRK~R----------tHRLi~rGa~lEsi~~e~~~lT~~E~~~ll~~~ 75 (86)
T PF12958_consen 6 LQAEIEKAEKKLEQAEHKIKQLENRKKKLEKKERKER----------THRLIERGAILESIFPEPKDLTNDEFYELLEFL 75 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhhHHHHHHhhcchhcCHHHHHHHHHHH
Confidence 5566666666777777777777766666654212222 2233345678899998 35566665544
No 276
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=38.63 E-value=1.4e+02 Score=21.15 Aligned_cols=46 Identities=13% Similarity=0.250 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q psy1302 31 AKNKKLQKIYSKYEEVKQDIQDIMDEF----NRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 31 ~KtkkLkKl~~kl~~~k~Ei~Dlq~E~----~~ERedll~tir~l~relk 76 (225)
.+...|.++...+.++..-|..|.-|- ..+|..|...++....+|+
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~ 71 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELK 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555444443 2556666666666555554
No 277
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=38.42 E-value=1.3e+02 Score=23.29 Aligned_cols=56 Identities=23% Similarity=0.453 Sum_probs=32.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q psy1302 22 YSTLEQEVQAKNKKLQKIYSKYEEV--KQDIQDIMDEFNRDR---RDLEQSQDELLKDLKL 77 (225)
Q Consensus 22 yssLQeEve~KtkkLkKl~~kl~~~--k~Ei~Dlq~E~~~ER---edll~tir~l~relkL 77 (225)
+..|.+.+....+++..+-.++..+ +.++.+|+-+-..-+ ..+..+++.+++.+.|
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666677777766 666666665544333 3455555555555544
No 278
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=38.34 E-value=3.5e+02 Score=26.88 Aligned_cols=67 Identities=15% Similarity=0.309 Sum_probs=36.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q psy1302 22 YSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM---DEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPI 88 (225)
Q Consensus 22 yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq---~E~~~ERedll~tir~l~relkLk~lIId~FIP~ 88 (225)
|....+.+......|..+-..++.+..++.++- .++..+..++.+..+++.+.|.=...-....+|.
T Consensus 96 f~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~ 165 (560)
T PF06160_consen 96 FKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEE 165 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHH
Confidence 344444555555555555555555555555543 3344444556666666666665555544444544
No 279
>PRK11519 tyrosine kinase; Provisional
Probab=38.10 E-value=4.6e+02 Score=26.83 Aligned_cols=106 Identities=14% Similarity=0.174 Sum_probs=58.4
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCC--HHHHHHHHHHHHHHHHHHHHHHHHhH----------------------------H
Q psy1302 2 IEMKQELDKKEESTEEIRGNYST--LEQEVQAKNKKLQKIYSKYEEVKQDI----------------------------Q 51 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yss--LQeEve~KtkkLkKl~~kl~~~k~Ei----------------------------~ 51 (225)
.+++++|+..|........++.. +..|.+.....+..+..++.+++.+. .
T Consensus 277 ~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v~~l~~~~~~L~~~~~ 356 (719)
T PRK11519 277 PEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRTLLEKRKALEDEKA 356 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHH
Confidence 35666777776666666665543 44555554444444444444433333 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhccccccCCccccCCC
Q psy1302 52 DIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIVPE 112 (225)
Q Consensus 52 Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~ee~~kI~~~a~wdEe~~~W~l~~~ 112 (225)
.++.+.. .-.+.+..+++|+|+......+-+.+.-.-+...|..... ...|.+-..
T Consensus 357 ~l~~~~~-~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~i~~a~~----~~~~rIid~ 412 (719)
T PRK11519 357 KLNGRVT-AMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKITEAST----VGDVRIVDP 412 (719)
T ss_pred HHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCC----CCCeEEEec
Confidence 2222222 1223455667888888888888888776655555554332 346666543
No 280
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=38.05 E-value=70 Score=21.78 Aligned_cols=31 Identities=19% Similarity=0.484 Sum_probs=14.0
Q ss_pred HhhHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Q psy1302 12 EESTEEIRGNYSTLEQEVQAKNKKLQKIYSK 42 (225)
Q Consensus 12 Eee~~~le~~yssLQeEve~KtkkLkKl~~k 42 (225)
.|....+++.|.++.+-|+.....+..|..|
T Consensus 4 ~EAkelLqe~~d~IEqkiedid~qIaeLe~K 34 (46)
T PF08946_consen 4 AEAKELLQEHYDNIEQKIEDIDEQIAELEAK 34 (46)
T ss_dssp -----------THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHhHHHHHHHHHHHHHH
Confidence 4556678889999988887776666555544
No 281
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=38.04 E-value=2.9e+02 Score=24.48 Aligned_cols=83 Identities=19% Similarity=0.262 Sum_probs=47.6
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVK-QDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKL 80 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k-~Ei~Dlq~E~~~ERedll~tir~l~relkLk~l 80 (225)
++|+.+|.+.......+-.....++.+++.......|+..+-+.+- .--.+|-.+.-.++..|.+++..+..++.....
T Consensus 34 rd~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~ 113 (225)
T COG1842 34 RDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEE 113 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666665555555555555556666665555666555544332 334566666666666666666666666655544
Q ss_pred HHHh
Q psy1302 81 IIEN 84 (225)
Q Consensus 81 IId~ 84 (225)
.++.
T Consensus 114 ~~~~ 117 (225)
T COG1842 114 QVEK 117 (225)
T ss_pred HHHH
Confidence 4433
No 282
>PRK02793 phi X174 lysis protein; Provisional
Probab=38.02 E-value=1.5e+02 Score=21.54 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=9.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 24 TLEQEVQAKNKKLQKIYSKYEEVKQ 48 (225)
Q Consensus 24 sLQeEve~KtkkLkKl~~kl~~~k~ 48 (225)
.|-+.|-...+.|..|...++.+..
T Consensus 26 ~Ln~~v~~Qq~~I~~L~~~l~~L~~ 50 (72)
T PRK02793 26 ELNVTVTAHEMEMAKLRDHLRLLTE 50 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 283
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=37.98 E-value=2e+02 Score=25.92 Aligned_cols=56 Identities=23% Similarity=0.513 Sum_probs=36.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhcCChHHHHHHHHhccc
Q psy1302 42 KYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDL-----KLRKLIIENFIPIEELKRLEQRLVY 100 (225)
Q Consensus 42 kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~rel-----kLk~lIId~FIP~ee~~kI~~~a~w 100 (225)
+...+..|+++++.+|..++++++....+.-.+= +.-.+|-....|.+++ .++..|
T Consensus 82 ~~~~l~~~L~~i~~eF~~~k~~Fl~~Yd~~i~~w~~~~pew~~~Ir~~~~~~~~v---~~r~~F 142 (257)
T PF11348_consen 82 KAEELAEELEDIKTEFEQEKQDFLANYDQAIEEWIDRHPEWADIIRRAAPPAEDV---RSRFSF 142 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHhcCCCHHHH---Hhhccc
Confidence 5667788999999999999999886655543332 2334444445555554 445555
No 284
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=37.88 E-value=1.1e+02 Score=23.40 Aligned_cols=30 Identities=10% Similarity=0.375 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy1302 35 KLQKIYSKYEEVKQDIQDIMDEFNRDRRDL 64 (225)
Q Consensus 35 kLkKl~~kl~~~k~Ei~Dlq~E~~~ERedl 64 (225)
++++|.....++..|+..|+.+...+|.+-
T Consensus 50 ~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek 79 (87)
T PF12709_consen 50 KVDELENENKALKRENEQLKKKLDTEREEK 79 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555443
No 285
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=37.69 E-value=54 Score=29.80 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 38 KIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKL 80 (225)
Q Consensus 38 Kl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~l 80 (225)
.+++.-+.++.|+..++.+.+...+++....++|.+-|.++..
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~~ 112 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPLS 112 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 3444555555555555555554444455555556555555543
No 286
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=37.64 E-value=1e+02 Score=29.94 Aligned_cols=59 Identities=15% Similarity=0.306 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Q psy1302 31 AKNKKLQKIYSKYEEVKQDIQDI-----MDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPIE 89 (225)
Q Consensus 31 ~KtkkLkKl~~kl~~~k~Ei~Dl-----q~E~~~ERedll~tir~l~relkLk~lIId~FIP~e 89 (225)
...++|+.|...+...+..+.++ ..+...+.+.++..+..|.+.+.+.+.+++.|-...
T Consensus 167 L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~ 230 (475)
T PF10359_consen 167 LIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDSE 230 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34455555666666666666654 457888999999999999999999999998887654
No 287
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=37.45 E-value=1.6e+02 Score=26.25 Aligned_cols=54 Identities=13% Similarity=0.259 Sum_probs=36.6
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN 58 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~ 58 (225)
.||++.|-- .++|++..=..-+||+..+...+..|+.-++.+-+|-.+.++..+
T Consensus 4 EELRq~Ll~---TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq 57 (214)
T PF07795_consen 4 EELRQKLLY---TTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQ 57 (214)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555543 356677666677788887777788888877777777666665554
No 288
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=37.36 E-value=2.5e+02 Score=23.50 Aligned_cols=21 Identities=10% Similarity=0.278 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1302 56 EFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 56 E~~~ERedll~tir~l~relk 76 (225)
++..+|.+.-+....+...++
T Consensus 110 D~n~eK~~~r~e~~~~~~ki~ 130 (177)
T PF07798_consen 110 DLNLEKGRIREEQAKQELKIQ 130 (177)
T ss_pred HHHHhHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 289
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=37.21 E-value=2e+02 Score=25.71 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=19.5
Q ss_pred HHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1302 5 KQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDI 50 (225)
Q Consensus 5 ~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei 50 (225)
+.++...+.....++.....++.+++.....+......+..++.+.
T Consensus 86 ~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~ 131 (334)
T TIGR00998 86 EANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDL 131 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3344444444444444444444444444444444444444433333
No 290
>KOG3312|consensus
Probab=37.09 E-value=34 Score=29.14 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.0
Q ss_pred hhcCCHHHHHHHHHHHHHHHHH
Q psy1302 20 GNYSTLEQEVQAKNKKLQKIYS 41 (225)
Q Consensus 20 ~~yssLQeEve~KtkkLkKl~~ 41 (225)
.+|.+|.-||+.++|||++.+.
T Consensus 34 ~~Yk~LKa~vdK~sKKLE~~K~ 55 (186)
T KOG3312|consen 34 DKYKRLKAEVDKQSKKLEKKKE 55 (186)
T ss_pred hHHHHHHHHHHHHHHHHHHHhh
Confidence 5899999999999999987544
No 291
>PRK00295 hypothetical protein; Provisional
Probab=36.95 E-value=1.6e+02 Score=21.17 Aligned_cols=28 Identities=4% Similarity=0.177 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1302 23 STLEQEVQAKNKKLQKIYSKYEEVKQDI 50 (225)
Q Consensus 23 ssLQeEve~KtkkLkKl~~kl~~~k~Ei 50 (225)
..|-+.|-...+.|..|...++.+...+
T Consensus 22 e~Ln~~v~~Qq~~I~~L~~ql~~L~~rl 49 (68)
T PRK00295 22 QALNDVLVEQQRVIERLQLQMAALIKRQ 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 292
>PF06193 Orthopox_A5L: Orthopoxvirus A5L protein-like; InterPro: IPR010396 This family consists of several Orthopoxvirus A5L proteins. The vaccinia virus WR A5L open reading frame (corresponding to open reading frame A4L in vaccinia virus Copenhagen) encodes an immunodominant late protein found in the core of the vaccinia virion. The A5 protein appears to be required for the immature virion to form the brick-shaped intracellular mature virion [].
Probab=36.92 E-value=2.4e+02 Score=24.13 Aligned_cols=49 Identities=12% Similarity=0.329 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 30 QAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLR 78 (225)
Q Consensus 30 e~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk 78 (225)
+...+.|+.+.....+++.|..+|-.+.+.-|+.-.+.|.++.++|.-+
T Consensus 110 ~~IikEl~dik~~t~~LQ~es~~Lv~DIs~AKe~T~~AIn~IM~~L~k~ 158 (166)
T PF06193_consen 110 DNIIKELNDIKDETSSLQAESNSLVTDISDAKESTQDAINDIMKDLSKK 158 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666677777777777777777788888888888888888887644
No 293
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=36.88 E-value=2e+02 Score=26.54 Aligned_cols=42 Identities=21% Similarity=0.442 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 33 NKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKD 74 (225)
Q Consensus 33 tkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~re 74 (225)
...+++++.+|+.+...|..+-.+-..-+..|...+..|...
T Consensus 83 ~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l 124 (333)
T PF05816_consen 83 KNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQL 124 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888877777777777766666543
No 294
>KOG3634|consensus
Probab=36.72 E-value=1.8e+02 Score=27.72 Aligned_cols=50 Identities=14% Similarity=0.358 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q psy1302 30 QAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR---RDLEQSQDELLKDLKLRK 79 (225)
Q Consensus 30 e~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ER---edll~tir~l~relkLk~ 79 (225)
+....|+|-||..+..+..|==||..-|.++- -.|-+.||+.+|--+|+.
T Consensus 233 ~~LkeKiKELhqrI~kLE~EKyDLekR~eRQeYDlkeL~eRqrq~~r~~~~k~ 285 (361)
T KOG3634|consen 233 NDLKEKIKELHQRICKLETEKYDLEKRHERQEYDLKELNERQRQVQRNSALKK 285 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhccHHHHHHHHHHHHHHHHhhc
Confidence 34567889999999999999999999887654 456677888888877776
No 295
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=36.69 E-value=2e+02 Score=22.26 Aligned_cols=60 Identities=18% Similarity=0.387 Sum_probs=31.0
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q psy1302 18 IRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR--DLEQSQDELLKDLKL 77 (225)
Q Consensus 18 le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERe--dll~tir~l~relkL 77 (225)
+.....++++++....++--.+..+-+++-.|+.++..+-...++ ++-..+..+.++++-
T Consensus 8 ~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~ 69 (106)
T PF05837_consen 8 LQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKK 69 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHH
Confidence 334444455555544444445555555555666666655554444 444555555555543
No 296
>KOG0933|consensus
Probab=36.62 E-value=3.9e+02 Score=29.27 Aligned_cols=10 Identities=30% Similarity=0.620 Sum_probs=5.3
Q ss_pred CCcchHHHHH
Q psy1302 177 VAPSILSVLQ 186 (225)
Q Consensus 177 ~~~~~q~~l~ 186 (225)
+.|.+-++|+
T Consensus 981 vn~~~m~mle 990 (1174)
T KOG0933|consen 981 VNPKNMDMLE 990 (1174)
T ss_pred cCHHHHHHHH
Confidence 4555555555
No 297
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=36.51 E-value=72 Score=24.97 Aligned_cols=26 Identities=19% Similarity=0.478 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH----HHHhHHHHHHHHH
Q psy1302 33 NKKLQKIYSKYEE----VKQDIQDIMDEFN 58 (225)
Q Consensus 33 tkkLkKl~~kl~~----~k~Ei~Dlq~E~~ 58 (225)
..+|++|..+++. -+.+|+++++...
T Consensus 71 kEqL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 71 KEQLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 298
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=36.48 E-value=3e+02 Score=27.28 Aligned_cols=38 Identities=11% Similarity=0.283 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy1302 27 QEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDL 64 (225)
Q Consensus 27 eEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedl 64 (225)
++.+.....+..+...+..+..++..++..++.+|+..
T Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~ 97 (475)
T PRK10361 60 AECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHA 97 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444555555554444444433
No 299
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=36.26 E-value=3e+02 Score=24.16 Aligned_cols=28 Identities=18% Similarity=0.308 Sum_probs=17.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy1302 42 KYEEVKQDIQDIMDEFNRDRRDLEQSQD 69 (225)
Q Consensus 42 kl~~~k~Ei~Dlq~E~~~ERedll~tir 69 (225)
+|..+..||..+...|+.|---|.-.+|
T Consensus 144 kL~~ANeei~~v~~~~~~e~~aLqa~lk 171 (207)
T PF05010_consen 144 KLEKANEEIAQVRSKHQAELLALQASLK 171 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445667888888887766554444333
No 300
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=36.24 E-value=1.7e+02 Score=21.37 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=26.3
Q ss_pred hcCCHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy1302 21 NYSTLEQEVQAKNKKLQKIY-------SKYEEVKQDIQDIMDEFNRDRRDLEQSQD 69 (225)
Q Consensus 21 ~yssLQeEve~KtkkLkKl~-------~kl~~~k~Ei~Dlq~E~~~ERedll~tir 69 (225)
....+..++..+...|..+. .++.++-.+|.+++.+....+.+..-.++
T Consensus 60 ~~~~~r~~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~~~~l~~~~~~~~~~~~ 115 (125)
T PF13801_consen 60 EMRALRQELRAARQELRALLAAPPPDEAAIEALLEEIREAQAELRQERLEHLLEIR 115 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555554443 35556666666666666666655554444
No 301
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=36.13 E-value=4.2e+02 Score=26.31 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=29.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 43 YEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 43 l~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
.+++-+||.-|..|-++||+-|-+..+.|.-||+
T Consensus 387 ~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLr 420 (488)
T PF06548_consen 387 INSLAAEISALRAEREKERRFLKDENKGLQIQLR 420 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3556789999999999999999999999988775
No 302
>KOG0971|consensus
Probab=36.05 E-value=79 Score=33.98 Aligned_cols=52 Identities=17% Similarity=0.329 Sum_probs=0.0
Q ss_pred ChHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy1302 1 MIEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQD 52 (225)
Q Consensus 1 ~~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~D 52 (225)
|-..+..++-.-=+....|+.-.|||.||+..+.++..|-..+.-+|+|+..
T Consensus 306 mad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 306 MADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 303
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=36.01 E-value=3.5e+02 Score=25.45 Aligned_cols=30 Identities=17% Similarity=0.390 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1302 57 FNRDRRDLEQSQDELLKDLKLRKLIIENFI 86 (225)
Q Consensus 57 ~~~ERedll~tir~l~relkLk~lIId~FI 86 (225)
|-.||++|...+..+..+..-...=+...+
T Consensus 124 ~~~ere~lV~qLEk~~~q~~qLe~d~qs~l 153 (319)
T PF09789_consen 124 FPHEREDLVEQLEKLREQIEQLERDLQSLL 153 (319)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447888888888888877777665554444
No 304
>KOG2629|consensus
Probab=35.85 E-value=2.7e+02 Score=26.03 Aligned_cols=45 Identities=18% Similarity=0.297 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy1302 23 STLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQS 67 (225)
Q Consensus 23 ssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~t 67 (225)
..|++++...-+.++-|...+-++.+.+.-.|.|+.++--++..+
T Consensus 125 ~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~ 169 (300)
T KOG2629|consen 125 RQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNT 169 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666667777777777777777777777777777
No 305
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=35.75 E-value=2.1e+02 Score=28.06 Aligned_cols=52 Identities=17% Similarity=0.376 Sum_probs=40.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 22 YSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLK 73 (225)
Q Consensus 22 yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~r 73 (225)
...|++|.+.....+..|...+..++.|+.|++.++..+.+-+....+.+..
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~ 327 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQ 327 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3457788888888899999999999999999998888877766655555443
No 306
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=35.74 E-value=1.1e+02 Score=19.94 Aligned_cols=44 Identities=18% Similarity=0.394 Sum_probs=33.4
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEV 46 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~ 46 (225)
+|.++++...++..++-+.|+=.-.+|=..+++|.+|-.+|+..
T Consensus 1 ~L~~~Ie~~R~~L~~~~~~~~l~~~~vl~~Sq~LD~lI~~y~~~ 44 (45)
T PF09388_consen 1 ELLEEIEELRQELNELAEKKGLTDPEVLELSQELDKLINEYQKL 44 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 46677888888888888888656677888888888887777643
No 307
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=35.56 E-value=81 Score=24.57 Aligned_cols=43 Identities=35% Similarity=0.459 Sum_probs=34.6
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYE 44 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~ 44 (225)
.+|+++|.=.||+...+..+-+.|.++-+..+..|.|+..++-
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g 46 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYG 46 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3678888888888888888888888888888888887777664
No 308
>PLN02320 seryl-tRNA synthetase
Probab=35.45 E-value=1.5e+02 Score=29.44 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q psy1302 59 RDRRDLEQSQDELLKDLKLRKLIIENFIPI 88 (225)
Q Consensus 59 ~ERedll~tir~l~relkLk~lIId~FIP~ 88 (225)
.+...|+..+.+++.++....+-|=|++-+
T Consensus 144 ~~i~~le~~~~~~~~~l~~~~l~iPN~~h~ 173 (502)
T PLN02320 144 EGLVTLEEDLVKLTDELQLEAQSIPNMTHP 173 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 355566666777777777767777776644
No 309
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=35.43 E-value=2.2e+02 Score=24.94 Aligned_cols=85 Identities=20% Similarity=0.261 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhcCCh-----HHHH
Q psy1302 26 EQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKD--------LKLRKLIIENFIPI-----EELK 92 (225)
Q Consensus 26 QeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~re--------lkLk~lIId~FIP~-----ee~~ 92 (225)
+.+++....|++|....|++.-..+..++.+|..+.....+..-.++.+ |..+..+++...|. +++.
T Consensus 149 ~k~~eK~~~K~~ka~~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~~~~~~~~~~~~~~~e~~~ 228 (261)
T cd07648 149 PKEIEKAEAKLKKAQDEYKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQMKEFLASYAEVLSENHSAVGQVHEEFK 228 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 5566666778888888888888888899999988887776655555433 22333344444453 3445
Q ss_pred HHHHhccccccCCccccC
Q psy1302 93 RLEQRLVYDEESSQWNIV 110 (225)
Q Consensus 93 kI~~~a~wdEe~~~W~l~ 110 (225)
.....+.-+.|...|+-.
T Consensus 229 ~~~~~id~~~Di~~fv~~ 246 (261)
T cd07648 229 RQVDELTVDKLLRQFVES 246 (261)
T ss_pred HHHHhCCHHHHHHHHHHc
Confidence 555566667777777643
No 310
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=35.22 E-value=3e+02 Score=28.92 Aligned_cols=41 Identities=22% Similarity=0.443 Sum_probs=22.7
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYE 44 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~ 44 (225)
|...++.++.....+..++.+|.+-+..|.+.|..+..++.
T Consensus 383 l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 383 LRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555566666666666555555555555444
No 311
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=35.20 E-value=2.7e+02 Score=23.28 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy1302 67 SQDELLKDLKLRKLIIEN 84 (225)
Q Consensus 67 tir~l~relkLk~lIId~ 84 (225)
.+|+..+.+.++-.=+++
T Consensus 117 ~~r~e~~~~~~ki~e~~~ 134 (177)
T PF07798_consen 117 RIREEQAKQELKIQELNN 134 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555433333
No 312
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=35.11 E-value=1.5e+02 Score=29.74 Aligned_cols=30 Identities=13% Similarity=0.358 Sum_probs=14.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy1302 22 YSTLEQEVQAKNKKLQKIYSKYEEVKQDIQ 51 (225)
Q Consensus 22 yssLQeEve~KtkkLkKl~~kl~~~k~Ei~ 51 (225)
+..++++++...+.+.++..++.++..++.
T Consensus 558 ~~~~~~~~~~~e~~i~~le~~~~~l~~~l~ 587 (638)
T PRK10636 558 TQPLRKEIARLEKEMEKLNAQLAQAEEKLG 587 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444445555555555555544443
No 313
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=34.92 E-value=1.7e+02 Score=28.80 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=12.1
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy1302 21 NYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQD 52 (225)
Q Consensus 21 ~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~D 52 (225)
...+++..+...+..|......|+.++.|+..
T Consensus 275 ~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~ 306 (522)
T PF05701_consen 275 KSSELQSSLASAKKELEEAKKELEKAKEEASS 306 (522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 314
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=34.87 E-value=3.3e+02 Score=27.44 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=52.7
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q psy1302 16 EEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPI 88 (225)
Q Consensus 16 ~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~ 88 (225)
+-+++.-.++..-+..++..|.++-.+|-.|-.+..-..++-++|...---.+..|+++|.=.+|...+=|-.
T Consensus 483 i~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~s~ts~l~ 555 (622)
T COG5185 483 ITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLLSKTSILD 555 (622)
T ss_pred eeHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccchHhh
Confidence 3355556666666677777888888888888888877777777777777777888888887777665554443
No 315
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=34.83 E-value=2.4e+02 Score=24.38 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=26.3
Q ss_pred HHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1302 6 QELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN 58 (225)
Q Consensus 6 qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~ 58 (225)
.-+..-.+....++....+.|.|+..|+.-|.--..++..+...+.....+|+
T Consensus 116 ~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~ 168 (188)
T PF05335_consen 116 AALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYE 168 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555666666666666665554444444444444433333333
No 316
>PRK14142 heat shock protein GrpE; Provisional
Probab=34.72 E-value=2.2e+02 Score=25.39 Aligned_cols=58 Identities=12% Similarity=0.338 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh-HHHHHHHHh
Q psy1302 31 AKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPI-EELKRLEQR 97 (225)
Q Consensus 31 ~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~-ee~~kI~~~ 97 (225)
+..++++.+..+|.-+.+|++....-..+|++++...- ..-++..|+|. +++++....
T Consensus 44 ~~~~e~~elkdk~lR~~AEfEN~RKR~erE~e~~~~~A---------~e~~~kdLLpVlDnLERAL~~ 102 (223)
T PRK14142 44 HTEDKVAELTADLQRVQADFANYRKRALRDQQAAADRA---------KASVVSQLLGVLDDLERARKH 102 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhchHhHHHHHHhc
Confidence 44566777778888888999988888888888775432 12345555553 556666544
No 317
>KOG0933|consensus
Probab=34.70 E-value=2e+02 Score=31.36 Aligned_cols=82 Identities=16% Similarity=0.303 Sum_probs=37.5
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHH-----------HHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAK-----------NKKLQKIYSKYEEVKQDIQDIM---DEFNRDRRDLEQSQD 69 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~K-----------tkkLkKl~~kl~~~k~Ei~Dlq---~E~~~ERedll~tir 69 (225)
+.+.+++-+.+..+.+..|.+-++++... .++|+.+...++.+++.++.-. +.++++.+-|.-++.
T Consensus 746 ~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e 825 (1174)
T KOG0933|consen 746 LLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHE 825 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555554222 2233333333333333333222 223445555555666
Q ss_pred HHHHHHHHHHHHHHhc
Q psy1302 70 ELLKDLKLRKLIIENF 85 (225)
Q Consensus 70 ~l~relkLk~lIId~F 85 (225)
++++++.-...++...
T Consensus 826 ~l~~e~~~~k~~l~~~ 841 (1174)
T KOG0933|consen 826 ELEKEISSLKQQLEQL 841 (1174)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666665555544433
No 318
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=34.56 E-value=3.6e+02 Score=26.73 Aligned_cols=77 Identities=17% Similarity=0.387 Sum_probs=38.2
Q ss_pred HHHHHHHHhHhh-HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q psy1302 3 EMKQELDKKEES-TEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM-----DEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 3 el~qele~~Eee-~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq-----~E~~~ERedll~tir~l~relk 76 (225)
+|.+++++-..+ ...+.++|.. +...-...+.+..+.+.+..||.|+. .+...+-.+....+..|.+||+
T Consensus 18 ~L~~~i~~~k~eV~~~I~~~y~d----f~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~ 93 (593)
T PF06248_consen 18 RLSRRIEELKEEVHSMINKKYSD----FSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELE 93 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 3455666662 22233334445555666666664442 2334444455555556666666
Q ss_pred HHHHHHH
Q psy1302 77 LRKLIIE 83 (225)
Q Consensus 77 Lk~lIId 83 (225)
....+++
T Consensus 94 ~~~~~l~ 100 (593)
T PF06248_consen 94 ENEQLLE 100 (593)
T ss_pred HHHHHHH
Confidence 5555543
No 319
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=34.54 E-value=3.1e+02 Score=23.86 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=13.0
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy1302 18 IRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQ 51 (225)
Q Consensus 18 le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~ 51 (225)
++..+..+|.......+.+.|.+.+|.....|++
T Consensus 104 ~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e 137 (239)
T cd07647 104 TEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKD 137 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333334433333333
No 320
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=34.43 E-value=2.1e+02 Score=26.13 Aligned_cols=50 Identities=12% Similarity=0.224 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 27 QEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 27 eEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
+..+..+..++.+...|+.++.++.+--.....+-..++..|..|.+++.
T Consensus 134 ~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~lN~~I~ 183 (322)
T TIGR02492 134 ESAQALANSFNQTSNELQDLRKGINAEIKSAVTEINSLLKQIASLNKEIQ 183 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555444455555555555555555554
No 321
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=34.35 E-value=3.5e+02 Score=24.36 Aligned_cols=11 Identities=18% Similarity=0.486 Sum_probs=4.1
Q ss_pred HHHHHHHhHhh
Q psy1302 4 MKQELDKKEES 14 (225)
Q Consensus 4 l~qele~~Eee 14 (225)
++++...++.+
T Consensus 62 i~~~qd~reK~ 72 (230)
T PF03904_consen 62 IEEKQDIREKN 72 (230)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 322
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=34.34 E-value=2.1e+02 Score=24.80 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=14.6
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy1302 16 EEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQ 51 (225)
Q Consensus 16 ~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~ 51 (225)
+..-..|.+| |+....+++.-|..++..++.+|.
T Consensus 96 I~sf~~Y~~l--eL~s~~~ei~~L~~kI~~L~~~in 129 (181)
T PF04645_consen 96 IDSFNQYKNL--ELKSIKKEIEILRLKISSLQKEIN 129 (181)
T ss_pred HHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444556555 233333344444444444444433
No 323
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=34.31 E-value=3.6e+02 Score=25.47 Aligned_cols=17 Identities=24% Similarity=0.435 Sum_probs=8.1
Q ss_pred hhHHHHHhhcCCHHHHH
Q psy1302 13 ESTEEIRGNYSTLEQEV 29 (225)
Q Consensus 13 ee~~~le~~yssLQeEv 29 (225)
+|..++++.|..||+..
T Consensus 4 eEW~eL~~efq~Lqeth 20 (330)
T PF07851_consen 4 EEWEELQKEFQELQETH 20 (330)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555433
No 324
>PRK14155 heat shock protein GrpE; Provisional
Probab=34.31 E-value=1.7e+02 Score=25.74 Aligned_cols=33 Identities=9% Similarity=0.218 Sum_probs=15.4
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKL 36 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkL 36 (225)
+.+++++.+++..++..+|.-++-|.+.-+|+.
T Consensus 18 l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~ 50 (208)
T PRK14155 18 AAQEIEALKAEVAALKDQALRYAAEAENTKRRA 50 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444
No 325
>PRK10780 periplasmic chaperone; Provisional
Probab=34.29 E-value=2.6e+02 Score=22.94 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q psy1302 35 KLQKIYSKYEEVKQDIQDIMDEF 57 (225)
Q Consensus 35 kLkKl~~kl~~~k~Ei~Dlq~E~ 57 (225)
..+.....|+....|++....+|
T Consensus 51 ~~~~~q~el~~~~~elq~~~~~~ 73 (165)
T PRK10780 51 EFKGRASELQRMETDLQAKMQKL 73 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444
No 326
>PTZ00421 coronin; Provisional
Probab=34.27 E-value=1.4e+02 Score=29.22 Aligned_cols=46 Identities=11% Similarity=0.247 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 26 EQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDEL 71 (225)
Q Consensus 26 QeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l 71 (225)
|.....+.++|.-|-.+++...+||+-++++.+..+..+++++..+
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (493)
T PTZ00421 445 EGILDERLGRLQALSEKLRTQHEEIKRCREALQKKESIVMETLEKI 490 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677888889999999999999999999998888888887654
No 327
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=34.24 E-value=1.8e+02 Score=27.26 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1302 59 RDRRDLEQSQDELLKDL 75 (225)
Q Consensus 59 ~ERedll~tir~l~rel 75 (225)
.+-|.+-..+.+|.+++
T Consensus 133 ~qLEk~~~q~~qLe~d~ 149 (319)
T PF09789_consen 133 EQLEKLREQIEQLERDL 149 (319)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333444444433
No 328
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=34.16 E-value=3.2e+02 Score=23.92 Aligned_cols=50 Identities=18% Similarity=0.325 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHH--HHhcCCh
Q psy1302 39 IYSKYEEVKQDIQDIMDEF---NRDRRDLEQSQDEL-LKDLKLRKLI--IENFIPI 88 (225)
Q Consensus 39 l~~kl~~~k~Ei~Dlq~E~---~~ERedll~tir~l-~relkLk~lI--Id~FIP~ 88 (225)
+-..-+.+-.+|.++|++- ..+++.+...+.+| +.-.-|+.+| .++.|-.
T Consensus 93 lEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~ 148 (193)
T PF14662_consen 93 LEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQ 148 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3334444555666666554 34566666666666 3334444444 4555443
No 329
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=34.08 E-value=3e+02 Score=23.45 Aligned_cols=51 Identities=18% Similarity=0.317 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 29 VQAKNKKLQKIYSKYEEVKQDIQDIMD--------EFNRDRRDLEQSQDELLKDLKLRK 79 (225)
Q Consensus 29 ve~KtkkLkKl~~kl~~~k~Ei~Dlq~--------E~~~ERedll~tir~l~relkLk~ 79 (225)
.+.....+..+..++..++.-+..+.+ .|-+|.|||...+-.|+..++-..
T Consensus 87 ~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 87 FEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444333 478899999999988887776533
No 330
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=34.05 E-value=2.5e+02 Score=26.92 Aligned_cols=27 Identities=11% Similarity=0.466 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy1302 27 QEVQAKNKKLQKIYSKYEEVKQDIQDI 53 (225)
Q Consensus 27 eEve~KtkkLkKl~~kl~~~k~Ei~Dl 53 (225)
++.+...+.++++...+..++..|..+
T Consensus 334 ~~~~~l~~~~~~~~~~l~~l~~~l~~l 360 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEKLKKNLKKL 360 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333333333333333333
No 331
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=34.03 E-value=76 Score=26.57 Aligned_cols=84 Identities=12% Similarity=0.311 Sum_probs=36.6
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHH
Q psy1302 15 TEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENF---IPIEEL 91 (225)
Q Consensus 15 ~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~F---IP~ee~ 91 (225)
...+++.|.+++=-... .+.++.+-..-+.+..+++....+-..+..+|..++..+.....+-++-+|.| .|....
T Consensus 67 VD~feK~y~s~kip~p~-d~~~~~i~~~e~~~~~~~~~~~~~s~~~i~~l~keL~~i~~~~P~e~mT~dd~~~a~Pe~~~ 145 (161)
T PF05873_consen 67 VDEFEKQYESFKIPYPV-DKQTKEIDAQEKEAIKEAKEFEAESKKRIAELEKELANIESARPFEQMTVDDYAAAFPEIAL 145 (161)
T ss_dssp HHHHHHHHCC---------TTTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT----------------------
T ss_pred HHHHHHHHhccCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHhCCHHHHHHhCccccc
Confidence 45678889999744332 55666666777777778877777777777777777777766666666666643 233334
Q ss_pred HHHHHhccc
Q psy1302 92 KRLEQRLVY 100 (225)
Q Consensus 92 ~kI~~~a~w 100 (225)
+ |.+-.+|
T Consensus 146 d-~~k~~~w 153 (161)
T PF05873_consen 146 D-INKPTFW 153 (161)
T ss_dssp ---------
T ss_pred c-cCCCCCC
Confidence 4 5555555
No 332
>KOG2010|consensus
Probab=34.02 E-value=1.9e+02 Score=27.63 Aligned_cols=61 Identities=21% Similarity=0.320 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Q psy1302 24 TLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR---DLEQSQDELLKDLKLRKLIIEN 84 (225)
Q Consensus 24 sLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERe---dll~tir~l~relkLk~lIId~ 84 (225)
+|-=+|+-....|.-+-..|.....|-.|+..||.+++- -|.-...+|...|+-...+|+.
T Consensus 144 nl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeliee 207 (405)
T KOG2010|consen 144 NLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIEE 207 (405)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444445555555566666666665554 2333444555555555555554
No 333
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=34.02 E-value=4.1e+02 Score=26.06 Aligned_cols=46 Identities=13% Similarity=0.224 Sum_probs=29.4
Q ss_pred HhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy1302 10 KKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMD 55 (225)
Q Consensus 10 ~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~ 55 (225)
.-+++...+..+|.+-|+++.-.++.-..|...++.+-.+-..+..
T Consensus 120 ~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~a 165 (499)
T COG4372 120 AVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEA 165 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556677788888888877777766666666665554444433
No 334
>PLN02678 seryl-tRNA synthetase
Probab=33.94 E-value=2.3e+02 Score=27.73 Aligned_cols=56 Identities=18% Similarity=0.320 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 27 QEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNR------DRRDLEQSQDELLKDLKLRKLII 82 (225)
Q Consensus 27 eEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~------ERedll~tir~l~relkLk~lII 82 (225)
+++-..-++.+++..++..++.|.+.+..+... +++++.+..++|..+++-....+
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~ 94 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEV 94 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555556666666666666666555543 45566666666666665555444
No 335
>PRK04863 mukB cell division protein MukB; Provisional
Probab=33.70 E-value=5.1e+02 Score=29.36 Aligned_cols=9 Identities=11% Similarity=-0.082 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy1302 67 SQDELLKDL 75 (225)
Q Consensus 67 tir~l~rel 75 (225)
.+..+..++
T Consensus 405 el~elQ~el 413 (1486)
T PRK04863 405 ALDVQQTRA 413 (1486)
T ss_pred HHHHHHHHH
Confidence 333333333
No 336
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=33.63 E-value=95 Score=21.42 Aligned_cols=25 Identities=16% Similarity=0.489 Sum_probs=21.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Q psy1302 45 EVKQDIQDIMDEFNRDRRDLEQSQD 69 (225)
Q Consensus 45 ~~k~Ei~Dlq~E~~~ERedll~tir 69 (225)
....||.+++.-|+.-|+=+++.|.
T Consensus 23 ~ME~Eieelr~RY~~KRqPIldAie 47 (49)
T PF11629_consen 23 EMEQEIEELRQRYQAKRQPILDAIE 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHh
Confidence 4578999999999999999998874
No 337
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=33.60 E-value=3.4e+02 Score=24.08 Aligned_cols=73 Identities=14% Similarity=0.202 Sum_probs=42.2
Q ss_pred HhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1302 12 EESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIEN 84 (225)
Q Consensus 12 Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~ 84 (225)
+.....++..+..|++..+.+...+.|++..-.....++..++....+.-..+......+...+.=++.-++.
T Consensus 67 e~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~ 139 (256)
T PF14932_consen 67 EEDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQ 139 (256)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777766666666666666655555566666666666555555555555554444433333333
No 338
>KOG0962|consensus
Probab=33.38 E-value=3.6e+02 Score=30.09 Aligned_cols=87 Identities=23% Similarity=0.425 Sum_probs=46.3
Q ss_pred ChHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 1 MIEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKL 80 (225)
Q Consensus 1 ~~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~l 80 (225)
|.+++.+.....++...+...+..+|.++....+.+..+...-..++.+...+...- ...+.+.+.+..+..++.+...
T Consensus 821 ~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l-~~~~qle~~~~~l~e~~~~~~s 899 (1294)
T KOG0962|consen 821 VDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSL-ARLQQLEEDIEELSEEITRLDS 899 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHH
Confidence 345666666666666667777777777766666655554444444443333332222 2344455555555555544332
Q ss_pred ----HHHhcCCh
Q psy1302 81 ----IIENFIPI 88 (225)
Q Consensus 81 ----IId~FIP~ 88 (225)
+...|.|.
T Consensus 900 ~~~e~~~~~~~~ 911 (1294)
T KOG0962|consen 900 KVKELLERIQPL 911 (1294)
T ss_pred HHHhhHhhhcch
Confidence 34555553
No 339
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=33.19 E-value=82 Score=32.39 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhcc
Q psy1302 38 KIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLV 99 (225)
Q Consensus 38 Kl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~ee~~kI~~~a~ 99 (225)
.+-+++...++||+.|+.+|.+..+.+-.+-.--..|+.|+..+++-==--.|+=+|+.|..
T Consensus 368 RV~~~ia~~~AEIekmK~~Hak~m~k~k~~s~lk~AE~~LR~a~~~p~~~G~E~WRlEGrl~ 429 (669)
T PF08549_consen 368 RVAKKIADMNAEIEKMKARHAKRMAKFKRNSLLKDAEKELRDAVEDPSETGPEIWRLEGRLD 429 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCCccccCccceeeccccc
Confidence 34558888999999999999999999988877777888888777631111125566776666
No 340
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=33.11 E-value=2.2e+02 Score=22.07 Aligned_cols=16 Identities=13% Similarity=0.515 Sum_probs=7.3
Q ss_pred HHHhHHHHHHHHHHHH
Q psy1302 46 VKQDIQDIMDEFNRDR 61 (225)
Q Consensus 46 ~k~Ei~Dlq~E~~~ER 61 (225)
...+|+.++.++..+|
T Consensus 56 ~~~~l~~~~~~lk~~r 71 (106)
T PF05837_consen 56 LSEKLEKLEKELKKSR 71 (106)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 341
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=33.03 E-value=1.1e+02 Score=22.54 Aligned_cols=13 Identities=0% Similarity=0.245 Sum_probs=4.6
Q ss_pred HHHHHHHHHHhHH
Q psy1302 39 IYSKYEEVKQDIQ 51 (225)
Q Consensus 39 l~~kl~~~k~Ei~ 51 (225)
|..++..+..++.
T Consensus 81 l~~~~~~l~~~l~ 93 (106)
T PF01920_consen 81 LEKQLKYLEKKLK 93 (106)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 342
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=32.88 E-value=4.2e+02 Score=24.83 Aligned_cols=71 Identities=15% Similarity=0.315 Sum_probs=47.7
Q ss_pred HHHHhhcCCHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Q psy1302 16 EEIRGNYSTLEQEV-------QAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR----------DLEQSQDELLKDLKLR 78 (225)
Q Consensus 16 ~~le~~yssLQeEv-------e~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERe----------dll~tir~l~relkLk 78 (225)
-..+.+|+||..|+ ..||=-|.-+..-+.++...++++.+-|+.|.. .+.+.+-+|..+-.|+
T Consensus 154 skaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LL 233 (305)
T PF14915_consen 154 SKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLL 233 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666655 444555677888888888888888888887764 4566667777776666
Q ss_pred HHHHHhcC
Q psy1302 79 KLIIENFI 86 (225)
Q Consensus 79 ~lIId~FI 86 (225)
.+=++...
T Consensus 234 rQQLddA~ 241 (305)
T PF14915_consen 234 RQQLDDAH 241 (305)
T ss_pred HHHHHHHH
Confidence 55555443
No 343
>KOG0994|consensus
Probab=32.70 E-value=3.6e+02 Score=30.26 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=20.0
Q ss_pred HHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Q psy1302 5 KQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEE 45 (225)
Q Consensus 5 ~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~ 45 (225)
++-|.+.++++.-.|+.-+|.-+.+...-+++.+|+.++.+
T Consensus 1597 ~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~q 1637 (1758)
T KOG0994|consen 1597 QQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQ 1637 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555555555555555555555544444433
No 344
>PRK14127 cell division protein GpsB; Provisional
Probab=32.60 E-value=1.5e+02 Score=23.57 Aligned_cols=41 Identities=7% Similarity=0.294 Sum_probs=24.1
Q ss_pred hhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy1302 13 ESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDI 53 (225)
Q Consensus 13 ee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dl 53 (225)
+-..++-+.|..+..|+.....++..|..++..++..+...
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33445556666666666666666666666666655555543
No 345
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=32.58 E-value=3.9e+02 Score=24.43 Aligned_cols=40 Identities=13% Similarity=0.385 Sum_probs=17.2
Q ss_pred HHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 7 ELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEV 46 (225)
Q Consensus 7 ele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~ 46 (225)
+++.-.....++..-=.+|...++.|+.-|.....+|+++
T Consensus 177 ~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sL 216 (267)
T PF10234_consen 177 QLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSL 216 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444443
No 346
>KOG0240|consensus
Probab=32.56 E-value=2.1e+02 Score=29.15 Aligned_cols=62 Identities=24% Similarity=0.336 Sum_probs=43.8
Q ss_pred HhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 12 EESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLK 73 (225)
Q Consensus 12 Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~r 73 (225)
+++..-+.+...+|++.++.+...+++.-+-+..++.+..|-.+-+...|.++.+...++.+
T Consensus 413 ~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~ 474 (607)
T KOG0240|consen 413 EEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSE 474 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 34555667777888888888888888777777777777777777777666666665554443
No 347
>PRK14164 heat shock protein GrpE; Provisional
Probab=32.50 E-value=3.5e+02 Score=23.99 Aligned_cols=61 Identities=15% Similarity=0.305 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHH
Q psy1302 27 QEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIP-IEELKRLEQ 96 (225)
Q Consensus 27 eEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP-~ee~~kI~~ 96 (225)
.++....++++.+..+|.-+.+|+.....-.++|++++...-. ..++..|+| .+++++...
T Consensus 77 ~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~~a~---------~~~~~~LLpVlDnLerAl~ 138 (218)
T PRK14164 77 GEASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIETAK---------AGVATDLLPILDDLDLAEQ 138 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhHHhHHHHHHh
Confidence 3455566677777778888888888888888888777554322 345556666 356666554
No 348
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=32.37 E-value=3.2e+02 Score=27.09 Aligned_cols=21 Identities=10% Similarity=0.310 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1302 56 EFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 56 E~~~ERedll~tir~l~relk 76 (225)
..+.+|.++.+.+++|..++.
T Consensus 106 av~~~~~~~~~~~~ql~~~~~ 126 (472)
T TIGR03752 106 AVQSETQELTKEIEQLKSERQ 126 (472)
T ss_pred HHHhhhHHHHHHHHHHHHHHH
Confidence 344555555555555555543
No 349
>KOG4643|consensus
Probab=32.36 E-value=4.3e+02 Score=28.96 Aligned_cols=12 Identities=8% Similarity=0.077 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q psy1302 64 LEQSQDELLKDL 75 (225)
Q Consensus 64 ll~tir~l~rel 75 (225)
|.+....+.++.
T Consensus 583 ~idaL~alrrhk 594 (1195)
T KOG4643|consen 583 YIDALNALRRHK 594 (1195)
T ss_pred HHHHHHHHHHHH
Confidence 333333444433
No 350
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=32.26 E-value=82 Score=22.52 Aligned_cols=27 Identities=7% Similarity=0.331 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy1302 25 LEQEVQAKNKKLQKIYSKYEEVKQDIQ 51 (225)
Q Consensus 25 LQeEve~KtkkLkKl~~kl~~~k~Ei~ 51 (225)
+.|||+....+|+.|..+..+++.|-.
T Consensus 12 VrEEVevLK~~I~eL~~~n~~Le~EN~ 38 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNSQLEEENN 38 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777776666666555543
No 351
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=32.22 E-value=2.6e+02 Score=22.27 Aligned_cols=35 Identities=17% Similarity=0.538 Sum_probs=17.4
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy1302 18 IRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQD 52 (225)
Q Consensus 18 le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~D 52 (225)
++..-.+|+++.+..++++..|.+++-.+...+.+
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555554444444444444
No 352
>PRK14151 heat shock protein GrpE; Provisional
Probab=32.22 E-value=2.3e+02 Score=24.10 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=11.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 46 VKQDIQDIMDEFNRDRRDLEQSQDELLKD 74 (225)
Q Consensus 46 ~k~Ei~Dlq~E~~~ERedll~tir~l~re 74 (225)
++.++.++++.+.|-.-|+..--+...||
T Consensus 32 le~e~~el~d~~lR~~Ae~eN~rkR~~kE 60 (176)
T PRK14151 32 LEEQLAAAKDQSLRAAADLQNVRRRAEQD 60 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 353
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=31.96 E-value=2.8e+02 Score=23.56 Aligned_cols=53 Identities=21% Similarity=0.441 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 24 TLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 24 sLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
...++++...+.+|.|..-|..+-+++.=+.+++..+-+-..+++.++-++++
T Consensus 76 ~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~ 128 (157)
T COG3352 76 DIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELK 128 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555554444555555544444
No 354
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=31.92 E-value=3.2e+02 Score=23.19 Aligned_cols=52 Identities=21% Similarity=0.452 Sum_probs=30.4
Q ss_pred HHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy1302 8 LDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNR 59 (225)
Q Consensus 8 le~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ 59 (225)
|..-.+-...++..+.++..+.....|.+.-...++..++.+|+|+...|+.
T Consensus 46 id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~ 97 (157)
T COG3352 46 IDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYEL 97 (157)
T ss_pred HHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555666666666666666666666666666666666666555543
No 355
>KOG0240|consensus
Probab=31.92 E-value=3.4e+02 Score=27.69 Aligned_cols=53 Identities=21% Similarity=0.431 Sum_probs=22.3
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDE 56 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E 56 (225)
|+|++.+++.+......-+..|++++-.-...+---...|.....|..++|++
T Consensus 426 L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~ 478 (607)
T KOG0240|consen 426 LYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEE 478 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444433333333333333444444444443
No 356
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=31.82 E-value=3.1e+02 Score=27.40 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy1302 34 KKLQKIYSKYEEVKQDIQDIMDEFNRD 60 (225)
Q Consensus 34 kkLkKl~~kl~~~k~Ei~Dlq~E~~~E 60 (225)
.-|.-|+..-....+|+--||+||++-
T Consensus 478 SALdlLkrEKe~~EqefLslqeEfQk~ 504 (527)
T PF15066_consen 478 SALDLLKREKETREQEFLSLQEEFQKH 504 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666677777888888753
No 357
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=31.79 E-value=1.7e+02 Score=21.51 Aligned_cols=29 Identities=3% Similarity=0.316 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1302 30 QAKNKKLQKIYSKYEEVKQDIQDIMDEFN 58 (225)
Q Consensus 30 e~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~ 58 (225)
+..+++++.+...+..++..+..+..++.
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~ 93 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLK 93 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444443333
No 358
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=31.76 E-value=97 Score=25.75 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=31.4
Q ss_pred HhhcCCHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHH--H--HHHHHH-HHHHHHHHHHHHHHH
Q psy1302 19 RGNYSTLEQEVQAKN-KKLQKIYSKYEEVKQDIQDIMDE--F--NRDRRD-LEQSQDELLKDLKLR 78 (225)
Q Consensus 19 e~~yssLQeEve~Kt-kkLkKl~~kl~~~k~Ei~Dlq~E--~--~~ERed-ll~tir~l~relkLk 78 (225)
.+-|..|++|++... .+...+-..++.+. +..|+.+- | .++++. +...|++|+..|.-.
T Consensus 9 ~~g~~~L~~EL~~L~~~~r~e~~~~i~~Ar-~~GDl~ENaeY~aAk~~~~~~e~rI~~L~~~L~~A 73 (157)
T PRK01885 9 REGYARLKQELDYLWREERPEVTQKVSWAA-SLGDRSENADYIYGKKRLREIDRRVRFLTKRLENL 73 (157)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HcCCcchhhcHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 345777888887753 35555555566655 33444433 2 333333 333466666665433
No 359
>KOG0998|consensus
Probab=31.69 E-value=75 Score=33.49 Aligned_cols=78 Identities=13% Similarity=0.250 Sum_probs=54.8
Q ss_pred hHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q psy1302 11 KEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPI 88 (225)
Q Consensus 11 ~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~ 88 (225)
-..+...++..++.+++++....-.++..|..++.+..+|.++..+....+-..-..--.+...-.+....+......
T Consensus 503 ~~~ei~~~~~~ln~~~qq~~~l~~~v~~~~~~ve~l~~~L~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~k~~ 580 (847)
T KOG0998|consen 503 DNREISSLEKELNELQQQLSVLEGSVKAIESQVENLQKELLDLIYEMADTRSKSTLLDDSFKVGMELFEQLLKGSKLV 580 (847)
T ss_pred chhhHHHHHHHHhhhHHHHhHHhhhhhhhhhhhhhhHhHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhhhhhcc
Confidence 345667788888889998888888888888888888888888888877766655544444444445555555444443
No 360
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=31.51 E-value=3.4e+02 Score=23.40 Aligned_cols=52 Identities=23% Similarity=0.422 Sum_probs=25.8
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHH--------HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQ--------EVQAKNKKLQKIYSKYEEVKQDIQDIM 54 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQe--------Eve~KtkkLkKl~~kl~~~k~Ei~Dlq 54 (225)
.+.+.+.+.+++..-+.....-|++ |.+..+++|..+..+++.....|.+|.
T Consensus 86 ~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Le 145 (194)
T PF15619_consen 86 ELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELE 145 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544444444433 234445555555555555555555544
No 361
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=31.48 E-value=1.8e+02 Score=20.22 Aligned_cols=31 Identities=16% Similarity=0.396 Sum_probs=16.3
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 16 EEIRGNYSTLEQEVQAKNKKLQKIYSKYEEV 46 (225)
Q Consensus 16 ~~le~~yssLQeEve~KtkkLkKl~~kl~~~ 46 (225)
..+..++..++.++.....++..+...-+.+
T Consensus 37 ~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L 67 (105)
T PF00435_consen 37 EEQLKKHKELQEEIESRQERLESLNEQAQQL 67 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555444444
No 362
>KOG1003|consensus
Probab=31.20 E-value=1.3e+02 Score=26.61 Aligned_cols=32 Identities=13% Similarity=0.394 Sum_probs=18.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 42 KYEEVKQDIQDIMDEFNRDRRDLEQSQDELLK 73 (225)
Q Consensus 42 kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~r 73 (225)
..+.+.-++.|++..-...++.+.+....|..
T Consensus 166 sVakLeke~DdlE~kl~~~k~ky~~~~~eLD~ 197 (205)
T KOG1003|consen 166 RVAKLEKERDDLEEKLEEAKEKYEEAKKELDE 197 (205)
T ss_pred HHHHHcccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666555555544
No 363
>PRK14148 heat shock protein GrpE; Provisional
Probab=30.90 E-value=3.2e+02 Score=23.75 Aligned_cols=52 Identities=21% Similarity=0.343 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcC
Q psy1302 35 KLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLR-KLIIENFI 86 (225)
Q Consensus 35 kLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk-~lIId~FI 86 (225)
.+..+...+..++.++.++.+.|.|-.-|+..--+...|+..-. ..-+.+|+
T Consensus 41 e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~ 93 (195)
T PRK14148 41 QLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFA 93 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666777777777777777777777767777665433 22344443
No 364
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=30.88 E-value=4.2e+02 Score=26.89 Aligned_cols=86 Identities=19% Similarity=0.144 Sum_probs=51.2
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q psy1302 15 TEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPIEELKRL 94 (225)
Q Consensus 15 ~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~ee~~kI 94 (225)
...+.........|++.....|...-..|..++.+|+-+++..+. -+=--.+.+.|..+|.-.---+ =||++.+..|
T Consensus 32 v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~-Lqvq~~N~k~L~~eL~~Ll~~l--~i~~~~l~~L 108 (701)
T PF09763_consen 32 VNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNG-LQVQSANQKLLLNELENLLDTL--SIPEEHLEAL 108 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-hhhHHHHHHHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 344444555566677777777777777777777777777665542 1222233444444443332223 3788888888
Q ss_pred HHhccccccC
Q psy1302 95 EQRLVYDEES 104 (225)
Q Consensus 95 ~~~a~wdEe~ 104 (225)
.+ +.+++..
T Consensus 109 ~~-~~l~~~~ 117 (701)
T PF09763_consen 109 RN-ASLSSPD 117 (701)
T ss_pred hc-CCCCCcc
Confidence 87 7776554
No 365
>PF08656 DASH_Dad3: DASH complex subunit Dad3; InterPro: IPR013965 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=30.71 E-value=2.3e+02 Score=21.22 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 36 LQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLII 82 (225)
Q Consensus 36 LkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lII 82 (225)
..+|-..++.+-.++.++.+. ..-=+.+++++|+|++.+-|-.-++
T Consensus 12 Y~~La~~L~~L~~~l~~L~~~-~~~~~~lL~~LR~LE~K~glV~TL~ 57 (78)
T PF08656_consen 12 YQRLADNLKTLSDTLKDLNSS-NSPSEELLDGLRELERKIGLVYTLF 57 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHcc-CCChHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677777778877211 1112399999999999988755543
No 366
>PLN03188 kinesin-12 family protein; Provisional
Probab=30.66 E-value=4.1e+02 Score=29.66 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=29.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 43 YEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 43 l~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
.+++-+||.-|.-|-++||+-|-+..+.|.-||.
T Consensus 1157 ~~alaae~s~l~~ereker~~~~~enk~l~~qlr 1190 (1320)
T PLN03188 1157 INALAAEISALKVEREKERRYLRDENKSLQAQLR 1190 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 4556789999999999999999999999988775
No 367
>PRK00736 hypothetical protein; Provisional
Probab=30.28 E-value=2.1e+02 Score=20.54 Aligned_cols=34 Identities=12% Similarity=0.262 Sum_probs=13.4
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1302 17 EIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDI 50 (225)
Q Consensus 17 ~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei 50 (225)
-.+..-..|-+.|-...+.|..|..+++.+...+
T Consensus 16 fqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 16 EQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444433333
No 368
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=30.09 E-value=2.8e+02 Score=25.14 Aligned_cols=8 Identities=25% Similarity=0.156 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q psy1302 68 QDELLKDL 75 (225)
Q Consensus 68 ir~l~rel 75 (225)
||+|++++
T Consensus 248 IreLE~k~ 255 (259)
T PF08657_consen 248 IRELERKK 255 (259)
T ss_pred HHHHHHHH
Confidence 44444443
No 369
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=29.99 E-value=3.8e+02 Score=23.45 Aligned_cols=32 Identities=16% Similarity=0.471 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1302 39 IYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDE 70 (225)
Q Consensus 39 l~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~ 70 (225)
.-....++..+|.++...|..||..-.+.-..
T Consensus 119 ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~ 150 (247)
T PF06705_consen 119 IEELNQELVRELNELQEAFENERNEREEREEN 150 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667788888888888887665443333
No 370
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=29.65 E-value=2.1e+02 Score=24.19 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q psy1302 67 SQDELLKDLKLRKLIIENF 85 (225)
Q Consensus 67 tir~l~relkLk~lIId~F 85 (225)
.|+.+.++|.=....|...
T Consensus 44 ~i~~~~~~L~~~~~~L~~~ 62 (188)
T PF10018_consen 44 QIRDILKQLKEARKELRTL 62 (188)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444333333333
No 371
>PRK09343 prefoldin subunit beta; Provisional
Probab=29.63 E-value=1.7e+02 Score=23.20 Aligned_cols=29 Identities=0% Similarity=0.154 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1302 30 QAKNKKLQKIYSKYEEVKQDIQDIMDEFN 58 (225)
Q Consensus 30 e~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~ 58 (225)
....++++.+..+++.+......++..+.
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~ 102 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLK 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555444444444444
No 372
>KOG4005|consensus
Probab=29.46 E-value=3e+02 Score=25.24 Aligned_cols=8 Identities=13% Similarity=0.588 Sum_probs=4.1
Q ss_pred CCccccCC
Q psy1302 104 SSQWNIVP 111 (225)
Q Consensus 104 ~~~W~l~~ 111 (225)
...|.+.+
T Consensus 164 aev~~v~G 171 (292)
T KOG4005|consen 164 AEVWYVTG 171 (292)
T ss_pred CceEEecC
Confidence 44565554
No 373
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=29.38 E-value=2.6e+02 Score=21.42 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1302 55 DEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 55 ~E~~~ERedll~tir~l~relk 76 (225)
..|+....+|...+..+.+|+.
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e 66 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENE 66 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445444555544444
No 374
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=29.26 E-value=1.3e+02 Score=22.94 Aligned_cols=24 Identities=17% Similarity=0.461 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q psy1302 32 KNKKLQKIYSKYEEVKQDIQDIMD 55 (225)
Q Consensus 32 KtkkLkKl~~kl~~~k~Ei~Dlq~ 55 (225)
..++++.+...+..+..++..++.
T Consensus 92 l~~r~~~l~~~~~~l~~~~~~~~~ 115 (129)
T cd00890 92 LKKRLETLEKQIEKLEKQLEKLQD 115 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 375
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=29.21 E-value=2.6e+02 Score=21.27 Aligned_cols=60 Identities=25% Similarity=0.357 Sum_probs=34.5
Q ss_pred HhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 12 EESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELL 72 (225)
Q Consensus 12 Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~ 72 (225)
|........+|..+.+.+....+.++.|..++.+++.-++-+. +...+-..|++++..|.
T Consensus 27 e~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id-~Ie~~V~~LE~~v~~LD 86 (99)
T PF10046_consen 27 ENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQID-QIEEQVTELEQTVYELD 86 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3444455567777777777777777777777766665444332 23334444555444443
No 376
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=29.14 E-value=4.2e+02 Score=23.74 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=14.1
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHH
Q psy1302 15 TEEIRGNYSTLEQEVQAKNKKLQK 38 (225)
Q Consensus 15 ~~~le~~yssLQeEve~KtkkLkK 38 (225)
....-..|..+...|....++|++
T Consensus 144 H~~~~~~~~~ae~~v~~Lek~lkr 167 (239)
T PF05276_consen 144 HQRRARIYNEAEQRVQQLEKKLKR 167 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444566666666666666654
No 377
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=29.14 E-value=2e+02 Score=21.63 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1302 25 LEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDE 56 (225)
Q Consensus 25 LQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E 56 (225)
|.+++.....-|.-|+.++..++.|..-|..|
T Consensus 21 Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~E 52 (80)
T PF10224_consen 21 LIQEILELQDSLEALSDRVEEVKEENEKLESE 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555555444443
No 378
>KOG3809|consensus
Probab=29.10 E-value=3.7e+02 Score=26.76 Aligned_cols=29 Identities=17% Similarity=0.470 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy1302 39 IYSKYEEVKQDIQDIMDEFNRDRRDLEQS 67 (225)
Q Consensus 39 l~~kl~~~k~Ei~Dlq~E~~~ERedll~t 67 (225)
|++.|++++++|.|.+++...-|--+|.+
T Consensus 544 L~~~la~lq~~I~d~~e~i~~~r~~IL~N 572 (583)
T KOG3809|consen 544 LYNILANLQKEINDTKEEISKARGRILNN 572 (583)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55555555555555555555555544444
No 379
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=28.94 E-value=2.5e+02 Score=21.07 Aligned_cols=46 Identities=11% Similarity=0.245 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy1302 31 AKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIP 87 (225)
Q Consensus 31 ~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP 87 (225)
..-+.++-|..-|..+-..|..+++||. .|..|-++++..|++.+-
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~-----------kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENE-----------KLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666665554 566667777777766643
No 380
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=28.92 E-value=2.6e+02 Score=27.43 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 28 EVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 28 Eve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
..+..+..++.+...|+.++.++.+--..-..+-..|+..|.+|.+++.
T Consensus 147 ~a~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~ 195 (507)
T PRK07739 147 RAQALAETFNYLSQSLTDIQNDLKSEIDVTVKEINSLASQISDLNKQIA 195 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555554444444455555555555555554
No 381
>KOG1029|consensus
Probab=28.88 E-value=5.2e+02 Score=27.78 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=10.5
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHH
Q psy1302 17 EIRGNYSTLEQEVQAKNKKLQKIYS 41 (225)
Q Consensus 17 ~le~~yssLQeEve~KtkkLkKl~~ 41 (225)
+++-...+..+||+..++...-...
T Consensus 462 Dvr~~~tt~kt~ie~~~~q~e~~is 486 (1118)
T KOG1029|consen 462 DVRVDITTQKTEIEEVTKQRELMIS 486 (1118)
T ss_pred hheeccchHHHHHHHhhhHHHHHHH
Confidence 3333344444444444444333333
No 382
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=28.56 E-value=1.8e+02 Score=20.85 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=29.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 40 YSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 40 ~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
..+++.++.-|.=||.+|..--..|=..|+.|.++.+
T Consensus 2 ~~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~ 38 (60)
T PF14916_consen 2 EQQVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNK 38 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3567888888888888888888888888887777654
No 383
>PRK14156 heat shock protein GrpE; Provisional
Probab=28.55 E-value=3.8e+02 Score=22.95 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=26.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 41 SKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKL 77 (225)
Q Consensus 41 ~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkL 77 (225)
.++..++.++.++++.|.|-.-|+..-.+...|+..-
T Consensus 34 ~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~ 70 (177)
T PRK14156 34 SELELANERADEFENKYLRAHAEMQNIQRRANEERQQ 70 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777777777777777777654
No 384
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=28.48 E-value=1.8e+02 Score=24.27 Aligned_cols=41 Identities=17% Similarity=0.445 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 39 IYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRK 79 (225)
Q Consensus 39 l~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~ 79 (225)
-..+.+.++-|++++++.|..+++.+...++++-|+-...-
T Consensus 28 ~~~k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~~~~p 68 (198)
T PF02096_consen 28 SSAKMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKHGVNP 68 (198)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCc
Confidence 33566677788888888888888888888888877765443
No 385
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=28.25 E-value=1.9e+02 Score=19.40 Aligned_cols=9 Identities=33% Similarity=0.298 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q psy1302 64 LEQSQDELL 72 (225)
Q Consensus 64 ll~tir~l~ 72 (225)
|...|..|.
T Consensus 44 L~~~i~~L~ 52 (54)
T PF07716_consen 44 LRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 333344333
No 386
>KOG4460|consensus
Probab=28.08 E-value=2.3e+02 Score=29.02 Aligned_cols=36 Identities=14% Similarity=0.332 Sum_probs=13.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 48 QDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIE 83 (225)
Q Consensus 48 ~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId 83 (225)
+-++.|.+-|..+.--+-..-|+..+|+.+..-.++
T Consensus 637 ~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~ 672 (741)
T KOG4460|consen 637 NRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLR 672 (741)
T ss_pred HHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHH
Confidence 333333333333333333333444444433333333
No 387
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=27.97 E-value=1.2e+02 Score=25.88 Aligned_cols=10 Identities=20% Similarity=0.401 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q psy1302 66 QSQDELLKDL 75 (225)
Q Consensus 66 ~tir~l~rel 75 (225)
|.+|+|..||
T Consensus 38 DE~RDLKqEl 47 (166)
T PF04880_consen 38 DELRDLKQEL 47 (166)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 388
>KOG3647|consensus
Probab=27.93 E-value=4.7e+02 Score=24.46 Aligned_cols=42 Identities=21% Similarity=0.357 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy1302 28 EVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQD 69 (225)
Q Consensus 28 Eve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir 69 (225)
-|....-.+.++..+|.+|..+...|.+-.++-+.+|+.+..
T Consensus 113 aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rk 154 (338)
T KOG3647|consen 113 AIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRK 154 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555666666666666666655555555554443
No 389
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=27.80 E-value=4e+02 Score=22.98 Aligned_cols=84 Identities=13% Similarity=0.180 Sum_probs=45.9
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEE-VKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKL 80 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~-~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~l 80 (225)
++|...|.+-......+......+..+++.....+.+...+-+. ++.--.||-.+.-.++..+...+..|..++.-...
T Consensus 34 rem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~ 113 (219)
T TIGR02977 34 QEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEE 113 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555444444444444444555555555555555544433 33445566666666666667766666666665555
Q ss_pred HHHhc
Q psy1302 81 IIENF 85 (225)
Q Consensus 81 IId~F 85 (225)
.++.+
T Consensus 114 ~v~~l 118 (219)
T TIGR02977 114 TLAKL 118 (219)
T ss_pred HHHHH
Confidence 55444
No 390
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=27.69 E-value=5.9e+02 Score=24.97 Aligned_cols=77 Identities=9% Similarity=0.194 Sum_probs=45.6
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy1302 17 EIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQ 96 (225)
Q Consensus 17 ~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~ee~~kI~~ 96 (225)
++.....+...=++....-|.+....|.++-.||.+||+... +....+.+-+... -+|...|=+-.|||+-+..|.+
T Consensus 18 ~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~-~l~~~L~Nrk~~~--~~L~~~i~~i~ipP~lI~~I~~ 94 (508)
T PF04129_consen 18 DLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSS-SLNVKLKNRKAVE--EKLSPFIDDIVIPPDLIRSICE 94 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHH--HHHHHHHHHHcCCHHHHHhHhc
Confidence 333333333333444455666667777777777777777766 3344444444333 3566677778899987666664
No 391
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=27.65 E-value=1.5e+02 Score=22.25 Aligned_cols=20 Identities=15% Similarity=0.385 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q psy1302 39 IYSKYEEVKQDIQDIMDEFN 58 (225)
Q Consensus 39 l~~kl~~~k~Ei~Dlq~E~~ 58 (225)
|...++.+++|++++..+|+
T Consensus 12 Lk~eiqkle~ELq~~~~~~q 31 (76)
T PF07334_consen 12 LKEEIQKLEAELQQNKREFQ 31 (76)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 33444444555555555544
No 392
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=27.63 E-value=3.3e+02 Score=26.87 Aligned_cols=67 Identities=15% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDE---FNRDRRDLEQSQDELLK 73 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E---~~~ERedll~tir~l~r 73 (225)
+.....-.....+..+-..|.+ +.....+++++|.+|+.++.++..++.+ .+++.+-+...+.++..
T Consensus 134 Q~~~~~l~~~~~~~~lLD~~~~----~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~ 203 (563)
T TIGR00634 134 QHDQQLLFRPDEQRQLLDTFAG----ANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE 203 (563)
T ss_pred chHHHHhcCHHHHHHHHHHhcC----chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
No 393
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=27.58 E-value=1.4e+02 Score=28.29 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 56 EFNRDRRDLEQSQDELLKDLKLRKLII 82 (225)
Q Consensus 56 E~~~ERedll~tir~l~relkLk~lII 82 (225)
-..+.+.++.+.+..+.+++.-...++
T Consensus 270 k~~~k~~~~~~q~~~~~k~~~~~~~~~ 296 (406)
T PF02388_consen 270 KKKNKLKELEEQLASLEKRIEEAEELI 296 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888887665554
No 394
>KOG0018|consensus
Probab=27.51 E-value=4.7e+02 Score=28.75 Aligned_cols=67 Identities=9% Similarity=0.159 Sum_probs=36.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q psy1302 15 TEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQ---DELLKDLKLRKLI 81 (225)
Q Consensus 15 ~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~ti---r~l~relkLk~lI 81 (225)
+..+...-+++....+....-++++...+-.++.+..+++.++...+..+.++- ++-.|..++...|
T Consensus 425 ~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e~sR~~~~~eav 494 (1141)
T KOG0018|consen 425 RNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRHEGSRRSRKQEAV 494 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHH
Confidence 344444455555555555555555666666666666666666666666655543 2334444444443
No 395
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=27.47 E-value=6.8e+02 Score=25.57 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q psy1302 67 SQDELLKDLKLRKLIIENFI 86 (225)
Q Consensus 67 tir~l~relkLk~lIId~FI 86 (225)
....|.+++-+...+++.+-
T Consensus 252 e~e~L~~q~l~Qtql~d~lq 271 (617)
T PF15070_consen 252 EKEELHKQLLQQTQLMDRLQ 271 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34466777777777766654
No 396
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=27.44 E-value=5.8e+02 Score=25.65 Aligned_cols=64 Identities=8% Similarity=0.201 Sum_probs=33.3
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 20 GNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIE 83 (225)
Q Consensus 20 ~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId 83 (225)
.......++.+.....|+.+..++..++.|+.-...-|+.+...|-+.+-.|..+|.-..--|+
T Consensus 448 ~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~ 511 (518)
T PF10212_consen 448 KRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQ 511 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444445555555555555555555555555555555555555555554443333
No 397
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.20 E-value=3.2e+02 Score=23.78 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 34 KKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKD 74 (225)
Q Consensus 34 kkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~re 74 (225)
+.+.|+..|+..++.+..+...+|..--..|..+-..-..+
T Consensus 153 ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~~~ 193 (239)
T cd07647 153 KEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWESE 193 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666665555554444333333
No 398
>KOG3478|consensus
Probab=27.05 E-value=3.4e+02 Score=21.95 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy1302 32 KNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQ 68 (225)
Q Consensus 32 KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~ti 68 (225)
..|+|.-.-..++.+..-|.|++.+|...|+.+..-+
T Consensus 74 V~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q 110 (120)
T KOG3478|consen 74 VGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQ 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778888889999999999999988775543
No 399
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=26.83 E-value=57 Score=33.82 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=23.6
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy1302 16 EEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62 (225)
Q Consensus 16 ~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERe 62 (225)
..+++.|..|++|++.....|..-...++-++.|+.++...|..+|.
T Consensus 440 ~kl~~E~~~l~~ei~~l~~iL~s~~~l~~~i~~eL~~ik~kfg~~RR 486 (742)
T PRK05561 440 IEIRKEQDELRKEIAELEAILASERKLRKLIKKELKADAKKFGDPRR 486 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 34444445555555444444444444444455555555555555444
No 400
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.78 E-value=4e+02 Score=22.64 Aligned_cols=61 Identities=15% Similarity=0.335 Sum_probs=0.0
Q ss_pred hHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHh
Q psy1302 14 STEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQD--ELLKDLKLRKLIIEN 84 (225)
Q Consensus 14 e~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir--~l~relkLk~lIId~ 84 (225)
.+....-.|..+++++..|+.. ++.||...+..|+.=.+++...+. +..|...|+..+++.
T Consensus 117 ~R~~~q~~~e~~~e~L~~k~~~----------l~~ev~~a~~~~e~~~~~~~~E~~rF~~~K~~d~k~~l~~~ 179 (200)
T cd07624 117 RRDQFQIEYELSVEELNKKRLE----------LLKEVEKLQDKLECANADLKADLERWKQNKRQDLKKILLDM 179 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 401
>PRK10869 recombination and repair protein; Provisional
Probab=26.77 E-value=3.9e+02 Score=26.59 Aligned_cols=61 Identities=16% Similarity=0.284 Sum_probs=0.0
Q ss_pred hHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 11 KEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 11 ~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
..+....+-..|... ....+.++.+|..|+.++.++.+++.. +.++.+-.+-++-+-.||.
T Consensus 138 ~~~~~~~lLD~~~~~----~~~~~~~~~~y~~~~~~~~~l~~l~~~-~~~~~~~~d~l~fql~Ei~ 198 (553)
T PRK10869 138 KPEHQKTLLDAYANE----TSLLQEMRAAYQLWHQSCRDLAQHQQQ-SQERAARKQLLQYQLKELN 198 (553)
T ss_pred CHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHH
No 402
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=26.76 E-value=3e+02 Score=23.49 Aligned_cols=69 Identities=14% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDL 75 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~rel 75 (225)
+..+|+.+|...-.-++.|++- +..--.+|-.||..+..++.-+.|+...=+++-.++-..+-...+.+
T Consensus 114 l~~eL~~ke~~~~~ee~~~~~y---~~~eh~rll~LWr~v~~lRr~f~elr~~TerdL~~~r~e~~r~~r~~ 182 (182)
T PF15035_consen 114 LRDELEQKEAEWREEEENFNQY---LSSEHSRLLSLWREVVALRRQFAELRTATERDLSDMRAEFARTSRSV 182 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh---hcccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
No 403
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=26.75 E-value=3.4e+02 Score=21.93 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=18.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 47 KQDIQDIMDEFNRDRRDLEQSQDELLKDLKLR 78 (225)
Q Consensus 47 k~Ei~Dlq~E~~~ERedll~tir~l~relkLk 78 (225)
..+|..+++.|+.+...|...|..|+.-|+.+
T Consensus 27 ~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y 58 (149)
T PF07352_consen 27 NDEIARIKEWYEAEIAPLQNRIEYLEGLLQAY 58 (149)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666655555443
No 404
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=26.62 E-value=4e+02 Score=23.60 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=9.9
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 21 NYSTLEQEVQAKNKKLQKIYSKYEEVK 47 (225)
Q Consensus 21 ~yssLQeEve~KtkkLkKl~~kl~~~k 47 (225)
.|..+.+-++...+.+..|..|+.+++
T Consensus 107 ~~~~~~~~~~~l~~~~~~Le~Ki~e~~ 133 (225)
T COG1842 107 ELQQAEEQVEKLKKQLAALEQKIAELR 133 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 405
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=26.58 E-value=3.7e+02 Score=23.17 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=16.3
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy1302 19 RGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDI 53 (225)
Q Consensus 19 e~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dl 53 (225)
++....|+.+++.....+.+|..++..++..|.++
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443
No 406
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=26.39 E-value=3.3e+02 Score=21.55 Aligned_cols=39 Identities=10% Similarity=0.312 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy1302 24 TLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62 (225)
Q Consensus 24 sLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERe 62 (225)
++.+-++...++++.|...+..+..++..++..++.-..
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~ 129 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQ 129 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888888888888888877664333
No 407
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=26.28 E-value=6e+02 Score=25.06 Aligned_cols=48 Identities=15% Similarity=0.447 Sum_probs=23.5
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy1302 18 IRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLE 65 (225)
Q Consensus 18 le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll 65 (225)
+.....++..|++..+..|.+...-...++..+.-|+.|..+.+.++.
T Consensus 279 ~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~ 326 (522)
T PF05701_consen 279 LQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELE 326 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555444444444444444444444444443
No 408
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=26.28 E-value=2.4e+02 Score=20.05 Aligned_cols=15 Identities=7% Similarity=0.293 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy1302 61 RRDLEQSQDELLKDL 75 (225)
Q Consensus 61 Redll~tir~l~rel 75 (225)
...+-..+.++.-.+
T Consensus 36 i~~~~~~l~~I~~n~ 50 (71)
T PF10779_consen 36 IKNLNKQLEKIKSNT 50 (71)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
No 409
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=26.14 E-value=2.6e+02 Score=20.33 Aligned_cols=54 Identities=20% Similarity=0.358 Sum_probs=31.5
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 19 RGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 19 e~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
.+.-.-|.+|-+...++--++..-++.+++.+.++..... ++-..+..+..++.
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~----~l~~~~~~~e~~~~ 64 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIK----ELKKKLEELEKELE 64 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3445556667777777766777777777777766664333 33344444444443
No 410
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=26.03 E-value=5.2e+02 Score=23.70 Aligned_cols=85 Identities=15% Similarity=0.227 Sum_probs=0.0
Q ss_pred HhhHHHHHhhcCCHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHH-----------HHHHHHHHH
Q psy1302 12 EESTEEIRGNYSTLEQEVQAKNKKLQKI-------YSKYEEVKQDIQDIMDEFNRDRRDL-----------EQSQDELLK 73 (225)
Q Consensus 12 Eee~~~le~~yssLQeEve~KtkkLkKl-------~~kl~~~k~Ei~Dlq~E~~~ERedl-----------l~tir~l~r 73 (225)
++.........+.|+.++.....+|..+ .-.++.++.++..++.....++..+ ......|.+
T Consensus 206 ~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~r 285 (362)
T TIGR01010 206 KAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVL 285 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH
Q psy1302 74 DLKLRKLIIENFIPIEELKRLEQ 96 (225)
Q Consensus 74 elkLk~lIId~FIP~ee~~kI~~ 96 (225)
+..+-..+.+.++-.-+..++..
T Consensus 286 e~~~a~~~y~~~l~r~~~a~~~~ 308 (362)
T TIGR01010 286 QNELAQQQLKAALTSLQQTRVEA 308 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 411
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.03 E-value=1.9e+02 Score=21.51 Aligned_cols=22 Identities=9% Similarity=0.342 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q psy1302 32 KNKKLQKIYSKYEEVKQDIQDI 53 (225)
Q Consensus 32 KtkkLkKl~~kl~~~k~Ei~Dl 53 (225)
..+-+.|+..++..+-..+.|+
T Consensus 34 q~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 34 QQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344444444444444333
No 412
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=26.03 E-value=5.1e+02 Score=23.63 Aligned_cols=61 Identities=10% Similarity=0.256 Sum_probs=40.7
Q ss_pred hHHHHHhhcCCHHHHHHH-----------HHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 14 STEEIRGNYSTLEQEVQA-----------KNKKLQKIYSKYEEVK----QDIQDIMDEFNRDRRDLEQSQDELLKD 74 (225)
Q Consensus 14 e~~~le~~yssLQeEve~-----------KtkkLkKl~~kl~~~k----~Ei~Dlq~E~~~ERedll~tir~l~re 74 (225)
+...+..+-...++||.. |.-+|-.|...+++++ .|+.|+..-++.+|..|...+-.-.++
T Consensus 89 ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~ 164 (258)
T PF15397_consen 89 QLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQEKKEE 164 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666654 3346777888888876 677788888888888887766554444
No 413
>KOG4674|consensus
Probab=25.95 E-value=7.3e+02 Score=28.92 Aligned_cols=54 Identities=17% Similarity=0.435 Sum_probs=40.7
Q ss_pred HhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy1302 10 KKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRD 63 (225)
Q Consensus 10 ~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERed 63 (225)
+.-+....+++.|.+|+.||..++..|.|+..-..=++..+..|+.....=|++
T Consensus 651 E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e 704 (1822)
T KOG4674|consen 651 EKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEE 704 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456778889999999999999999998887777777777777655544443
No 414
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=25.92 E-value=5.1e+02 Score=24.89 Aligned_cols=12 Identities=33% Similarity=0.252 Sum_probs=5.9
Q ss_pred Hccccccccccc
Q psy1302 189 LQDEADIDVDVK 200 (225)
Q Consensus 189 l~~e~~~~~d~~ 200 (225)
+++..++++++-
T Consensus 329 l~~~~dIV~eGl 340 (401)
T PF06785_consen 329 LKDFSDIVQEGL 340 (401)
T ss_pred HhcchHHHHhhH
Confidence 444455555543
No 415
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=25.88 E-value=3.4e+02 Score=21.49 Aligned_cols=36 Identities=17% Similarity=0.379 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1302 49 DIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIEN 84 (225)
Q Consensus 49 Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~ 84 (225)
.+.+....+.+..+.+...+..+..++.-+.--++.
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~ 126 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQ 126 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777777777777777666655544
No 416
>PRK14163 heat shock protein GrpE; Provisional
Probab=25.85 E-value=3.5e+02 Score=23.96 Aligned_cols=59 Identities=8% Similarity=0.322 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhcCC-hHHHHHHHHh
Q psy1302 39 IYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKL-----RKLIIENFIP-IEELKRLEQR 97 (225)
Q Consensus 39 l~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkL-----k~lIId~FIP-~ee~~kI~~~ 97 (225)
+..++..++.++.++.+.|.|-.-|+..-.+...||..- ..-++..|+| .+++++....
T Consensus 45 l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~ 109 (214)
T PRK14163 45 LTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVGRAREH 109 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhc
Confidence 333444455555555555555555555544444444332 1223445555 3566666543
No 417
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=25.83 E-value=2.8e+02 Score=22.35 Aligned_cols=36 Identities=14% Similarity=0.334 Sum_probs=21.7
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy1302 16 EEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQ 51 (225)
Q Consensus 16 ~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~ 51 (225)
...-..|+.+..-+..-..++..++..|.+++..|.
T Consensus 68 n~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~ 103 (142)
T PF04048_consen 68 NSSIGSYSQILSSISESQERIRELKESLQEAKSLLG 103 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334456666666666666666666666666655543
No 418
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.79 E-value=2.2e+02 Score=22.12 Aligned_cols=11 Identities=18% Similarity=0.440 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q psy1302 67 SQDELLKDLKL 77 (225)
Q Consensus 67 tir~l~relkL 77 (225)
....|.+++..
T Consensus 49 ~n~~L~~eI~~ 59 (105)
T PRK00888 49 RNDQLFAEIDD 59 (105)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 419
>PF14282 FlxA: FlxA-like protein
Probab=25.62 E-value=2.3e+02 Score=21.89 Aligned_cols=22 Identities=9% Similarity=0.365 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q psy1302 33 NKKLQKIYSKYEEVKQDIQDIM 54 (225)
Q Consensus 33 tkkLkKl~~kl~~~k~Ei~Dlq 54 (225)
..+++-|...+..+.+.|.-++
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 420
>KOG4603|consensus
Probab=25.44 E-value=4.6e+02 Score=22.89 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=12.8
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHH
Q psy1302 17 EIRGNYSTLEQEVQAKNKKLQKIYS 41 (225)
Q Consensus 17 ~le~~yssLQeEve~KtkkLkKl~~ 41 (225)
+++++-++|..||..-+++|+++.+
T Consensus 120 emQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 120 EMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555444
No 421
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=25.36 E-value=3.1e+02 Score=20.86 Aligned_cols=66 Identities=15% Similarity=0.276 Sum_probs=53.2
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 16 EEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLII 82 (225)
Q Consensus 16 ~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lII 82 (225)
.-....|.-|+.--..-..+..++......+...++++...|. +-+.+++.|..+..++.=...++
T Consensus 17 ~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~-~l~~~l~~Id~Ie~~V~~LE~~v 82 (99)
T PF10046_consen 17 EATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYE-ELQPYLQQIDQIEEQVTELEQTV 82 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777788999999999999999999999884 77888888888888877666654
No 422
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=25.22 E-value=4.3e+02 Score=25.69 Aligned_cols=39 Identities=10% Similarity=0.256 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 38 KIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 38 Kl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
.|-..++.+-..+.+++.+-..+.....+.|+.+.++|.
T Consensus 133 ~L~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia 171 (483)
T PRK07521 133 DLANSLNDASDAVQSARADADAEIADSVDTLNDLLAQFE 171 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555556666666666666663
No 423
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=25.15 E-value=1.7e+02 Score=21.57 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1302 26 EQEVQAKNKKLQKIYSKYEEVKQDIQDIM 54 (225)
Q Consensus 26 QeEve~KtkkLkKl~~kl~~~k~Ei~Dlq 54 (225)
.||.+..+..|.++..++.+++..+.+|.
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555555555555543
No 424
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=25.09 E-value=2.4e+02 Score=19.57 Aligned_cols=18 Identities=17% Similarity=0.488 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhHHHH
Q psy1302 36 LQKIYSKYEEVKQDIQDI 53 (225)
Q Consensus 36 LkKl~~kl~~~k~Ei~Dl 53 (225)
+..+..++..++.++.++
T Consensus 26 i~~l~~~i~~l~~e~~~L 43 (80)
T PF04977_consen 26 IAELQKEIEELKKENEEL 43 (80)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 425
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=25.04 E-value=3.2e+02 Score=27.69 Aligned_cols=37 Identities=11% Similarity=0.215 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 39 IYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDL 75 (225)
Q Consensus 39 l~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~rel 75 (225)
|-..+..+-..+.+++.+-..+.....+.|+.+.++|
T Consensus 151 La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qI 187 (627)
T PRK06665 151 LGERIHDRYRSLERIRDMANDEIEITVEEINNILRNI 187 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444445555555555555555
No 426
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=25.03 E-value=70 Score=33.39 Aligned_cols=49 Identities=18% Similarity=0.371 Sum_probs=31.8
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy1302 15 TEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRD 63 (225)
Q Consensus 15 ~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERed 63 (225)
...+++.+..|++|++..+.-|......++-++.|+.++...|...|.-
T Consensus 429 ~~kl~~e~~~l~~ei~~l~~iL~~~~~l~~vi~~EL~eikkkfg~~RRT 477 (800)
T TIGR01063 429 REKLQEEYKELLELIADLEDILASEERVLEIIREELEEIKEQFGDPRRT 477 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 4455566666666666666666666666666777777777777766544
No 427
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=25.01 E-value=7.6e+02 Score=25.29 Aligned_cols=130 Identities=6% Similarity=0.076 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLI 81 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lI 81 (225)
..+-.++.+-+.+..+++.+...|..-.....=.+..+..+..++++++..++.+.. .--+.+...++|+|+.+....+
T Consensus 307 ~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~-~~p~~e~~~~~L~R~~~~~~~l 385 (726)
T PRK09841 307 KAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVS-AMPSTQQEVLRLSRDVEAGRAV 385 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhcCChHHHHHHHHhccccccCCccccCCCCCchhhhccCCCCCCCCCChhHHHHHHhhc
Q psy1302 82 IENFIPIEELKRLEQRLVYDEESSQWNIVPETNPFYIQKRLVASPQLRRPTTLKAREKISQ 142 (225)
Q Consensus 82 Id~FIP~ee~~kI~~~a~wdEe~~~W~l~~~~~~~~~~~RP~sa~g~kRP~s~~a~~a~~~ 142 (225)
-+.|.-.-+...|.....- ..|.+=..+.. |....+.+++..-.+-+.++.
T Consensus 386 Y~~lL~r~~e~~i~~a~~~----~~~rIid~A~~------p~~P~~P~~~~~~~~g~~lGl 436 (726)
T PRK09841 386 YLQLLNRQQELSISKSSAI----GNVRIIDPAVT------QPQPVKPKKALNVVLGFILGL 436 (726)
T ss_pred HHHHHHHHHHHHHHhccCC----CceeeccCCCC------CCCCCCchHHHHHHHHHHHHH
No 428
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=24.99 E-value=4e+02 Score=24.17 Aligned_cols=61 Identities=8% Similarity=0.072 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERe 62 (225)
...+.++.+.+.....++..+..++..++.....+..+...+..++.++...+.+|+|-+.
T Consensus 82 ~~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~ 142 (346)
T PRK10476 82 RPYELTVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEP 142 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 429
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=24.94 E-value=4.9e+02 Score=23.09 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=26.7
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVK 47 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k 47 (225)
+..++.|.+.++....|+++-.-+++|.....++-..+-...+.++
T Consensus 22 ~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~ 67 (246)
T PF00769_consen 22 RRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLE 67 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666677777766666666555555444444333333
No 430
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=24.89 E-value=4.7e+02 Score=22.89 Aligned_cols=46 Identities=37% Similarity=0.678 Sum_probs=28.7
Q ss_pred HHHHHHHHhHhhH----HHHHhhcCCHHHHHHHH---HHHH----HHHHHHHHHHHH
Q psy1302 3 EMKQELDKKEEST----EEIRGNYSTLEQEVQAK---NKKL----QKIYSKYEEVKQ 48 (225)
Q Consensus 3 el~qele~~Eee~----~~le~~yssLQeEve~K---tkkL----kKl~~kl~~~k~ 48 (225)
.|.+.+..+.+.. ..+..+|..|.+|.=.= +|+| =||+.||+++|.
T Consensus 23 ~L~~dl~~~~~~~~~~e~~~~~KY~~lR~ElI~ELkqsKklydnYYkL~~KY~~LK~ 79 (196)
T PF15272_consen 23 DLNQDLRERDERYELQETSYKEKYQQLRQELINELKQSKKLYDNYYKLYSKYQELKK 79 (196)
T ss_pred HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544442 45677899999886322 2333 267888998886
No 431
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=24.88 E-value=4.4e+02 Score=22.55 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=25.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 22 YSTLEQEVQAKNKKLQKIYSKY--EEVKQDIQDIMDEFNRDRRDLEQSQDELLK 73 (225)
Q Consensus 22 yssLQeEve~KtkkLkKl~~kl--~~~k~Ei~Dlq~E~~~ERedll~tir~l~r 73 (225)
-.|||.+++.+...|.--|.+- +..-.|-.+...+-....|++..-|++..+
T Consensus 24 Ir~lq~~~e~k~~~l~e~l~~~e~~r~v~ea~~~ke~~~Kl~E~iekkieeaR~ 77 (175)
T COG4741 24 IRSLQGKVESKARELEETLQKAERERLVNEAQARKEEEWKLKEWIEKKIEEARE 77 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777766655444433 222233334444444444555555544433
No 432
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=24.61 E-value=1.8e+02 Score=26.11 Aligned_cols=54 Identities=13% Similarity=0.261 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHhcCCh
Q psy1302 31 AKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKD-LKLRKLI--IENFIPI 88 (225)
Q Consensus 31 ~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~re-lkLk~lI--Id~FIP~ 88 (225)
..|++=..++.+..+++.|+...+. +...|...+..|..+ +||+.-| +..|-+.
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~~----~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~~~ 139 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQQ----TISSLRREVESLRADNVKLYEKIRYLQSYNNK 139 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 3455555555666666666654443 344555555666665 7887777 6777655
No 433
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=24.53 E-value=67 Score=33.35 Aligned_cols=46 Identities=26% Similarity=0.229 Sum_probs=26.4
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1302 16 EEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR 61 (225)
Q Consensus 16 ~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ER 61 (225)
..+++.|..|+.|++...+-|..-....+-++.|+.++.+.|-.+|
T Consensus 427 ~~i~~E~~~l~~e~~~l~~~L~~~~~~~~~i~~el~~~~~~~g~~R 472 (735)
T TIGR01062 427 HAIIDEQSELEKERAILEKILKSERELNQLVKKEIQADATKYGLAR 472 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3445555555555555555555555555555666666666666554
No 434
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.53 E-value=3e+02 Score=20.45 Aligned_cols=36 Identities=14% Similarity=0.299 Sum_probs=15.0
Q ss_pred hHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 11 KEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEV 46 (225)
Q Consensus 11 ~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~ 46 (225)
+|....++...-.-.+-.++....+|+-|..|++.+
T Consensus 20 QE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 20 QEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333343344444444444444444444444443
No 435
>KOG4797|consensus
Probab=24.51 E-value=1.9e+02 Score=23.26 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhcc
Q psy1302 63 DLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLV 99 (225)
Q Consensus 63 dll~tir~l~relkLk~lIId~FIP~ee~~kI~~~a~ 99 (225)
||.+..+.|++|-. |+...++++.+..+-....
T Consensus 78 eL~er~~~Le~EN~----lLk~~~spe~L~ql~~~~~ 110 (123)
T KOG4797|consen 78 ELEERNSALERENS----LLKTLASPEQLAQLPAQLS 110 (123)
T ss_pred HHHHHHHHHHHHHH----HHHhhCCHHHHHHHHHhcc
Confidence 44455555555543 4556788888888776544
No 436
>KOG1853|consensus
Probab=24.51 E-value=5.7e+02 Score=23.71 Aligned_cols=54 Identities=11% Similarity=0.190 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 29 VQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLII 82 (225)
Q Consensus 29 ve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lII 82 (225)
++...-++++|....+.++.|..-+.+-+.-.|-.....+..|..+|--...|-
T Consensus 54 L~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aik 107 (333)
T KOG1853|consen 54 LDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIK 107 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777777777776666666666666666666666655544443
No 437
>PHA00489 scaffolding protein
Probab=24.51 E-value=3.4e+02 Score=21.14 Aligned_cols=58 Identities=16% Similarity=0.371 Sum_probs=36.4
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHH
Q psy1302 17 EIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNR---DRRDLEQSQDELLKD 74 (225)
Q Consensus 17 ~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~---ERedll~tir~l~re 74 (225)
.+-.+..+-.=+-..+|.-|.+|...|-+.-.|..++.+.++. +++||.-....|=|+
T Consensus 10 ~iLnkL~dpEl~~sErTeaLqqlr~~ygSf~sEy~elT~a~eKl~aek~DLivsNskLFrq 70 (101)
T PHA00489 10 AILNKLGDPELTESERTEALQQLRESYGSFHSEYEELTEALEKLTAEKEDLIVSNSKLFRQ 70 (101)
T ss_pred HHHHHcCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 3344444444444567777888888888888888777777664 556666555555443
No 438
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=24.51 E-value=2.6e+02 Score=19.76 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q psy1302 38 KIYSKYEEVKQDIQDIMDEFN 58 (225)
Q Consensus 38 Kl~~kl~~~k~Ei~Dlq~E~~ 58 (225)
.+..+++..++++..+..++.
T Consensus 58 ~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 58 QYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344555556666666655554
No 439
>KOG2115|consensus
Probab=24.47 E-value=7.9e+02 Score=26.54 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=39.9
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDI 53 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dl 53 (225)
|.+|+..+-+..-.+...|..||.|+..--..+|-|.++++.+-.+.-|-
T Consensus 259 La~eIs~~SdsFfha~~~~~~Lq~~~~d~~~~vk~Lre~i~~vd~~~~~~ 308 (951)
T KOG2115|consen 259 LAQEISKRSDSFFHAMTSLHNLQKELRDTMSEVKELRENIKEVDAENVRK 308 (951)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777778888888899999998888888888888888877666543
No 440
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=24.42 E-value=5.8e+02 Score=25.99 Aligned_cols=23 Identities=9% Similarity=0.182 Sum_probs=9.0
Q ss_pred HHHHhHhhHHHHHhhcCCHHHHH
Q psy1302 7 ELDKKEESTEEIRGNYSTLEQEV 29 (225)
Q Consensus 7 ele~~Eee~~~le~~yssLQeEv 29 (225)
++...+++.-....+...+.+|.
T Consensus 347 ~~~~~~~~l~~~~~~~~~~~~e~ 369 (656)
T PRK06975 347 KVDRLDQELVQRQQANDAQTAEL 369 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444
No 441
>PRK11546 zraP zinc resistance protein; Provisional
Probab=24.32 E-value=2.9e+02 Score=22.96 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=14.7
Q ss_pred HHhhcCCHHHHHHHHHHHHH-HHHHHHHH
Q psy1302 18 IRGNYSTLEQEVQAKNKKLQ-KIYSKYEE 45 (225)
Q Consensus 18 le~~yssLQeEve~KtkkLk-Kl~~kl~~ 45 (225)
-..++.+|.++-..+|..|+ +||.|-.+
T Consensus 48 QQa~~q~I~~~f~~~t~~LRqqL~aKr~E 76 (143)
T PRK11546 48 QQAAWQKIHNDFYAQTSALRQQLVSKRYE 76 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666665554 34444333
No 442
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=24.30 E-value=2.8e+02 Score=26.17 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHH
Q psy1302 27 QEVQAKNKKLQKIYSKYEEVKQDIQDIMD--EFNRDRRDLEQS 67 (225)
Q Consensus 27 eEve~KtkkLkKl~~kl~~~k~Ei~Dlq~--E~~~ERedll~t 67 (225)
+.|-..++++.+|..+|..++.|++=++. .|..|+-.||++
T Consensus 175 D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~Llqs 217 (323)
T PF08537_consen 175 DRVILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQS 217 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666655443 355555555443
No 443
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=24.29 E-value=3.9e+02 Score=24.54 Aligned_cols=58 Identities=22% Similarity=0.340 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNR 59 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ 59 (225)
+.+..+.+..+.........-..+++|+..+.+.++.+..++...+..+.+++.+-.+
T Consensus 189 ~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~ 246 (269)
T PF05278_consen 189 ETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTR 246 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 444
>KOG2391|consensus
Probab=24.29 E-value=5.3e+02 Score=24.70 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 33 NKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLI 81 (225)
Q Consensus 33 tkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lI 81 (225)
...+-++.+-++.-+.||..-+.+-..+++.|+.+.-.|.+.+.++.-=
T Consensus 227 me~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k 275 (365)
T KOG2391|consen 227 MERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSK 275 (365)
T ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3334444455555566666666777777777777777777776665543
No 445
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=24.25 E-value=66 Score=34.40 Aligned_cols=50 Identities=16% Similarity=0.361 Sum_probs=38.3
Q ss_pred hHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy1302 14 STEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRD 63 (225)
Q Consensus 14 e~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERed 63 (225)
+...+++.|..|+++++..+.-|..-...++-++.|+.++...|..+|.-
T Consensus 447 e~~kl~~E~~eL~~~I~~l~~iL~~~~~l~~vi~~EL~eik~kygd~RRT 496 (957)
T PRK13979 447 EIVAFEKEYKELEKLIKKLTKILSSEKELLKVIKKELKEVKEKYGDERRT 496 (957)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCCe
Confidence 35567777778888888877777777777788888888888888877654
No 446
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=24.18 E-value=68 Score=33.22 Aligned_cols=44 Identities=11% Similarity=0.325 Sum_probs=19.2
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1302 18 IRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR 61 (225)
Q Consensus 18 le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ER 61 (225)
+++.|..|++|++....-|..-...++-++.|+.++...|..+|
T Consensus 432 l~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ik~kfg~~R 475 (738)
T TIGR01061 432 LKEEQNELEKKIISLEQIIASEKARNKLLKKQLEEYKKQFAQQR 475 (738)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 33333444444433333333333344444555555555555444
No 447
>PF15509 DUF4650: Domain of unknown function (DUF4650)
Probab=24.11 E-value=1.8e+02 Score=29.03 Aligned_cols=50 Identities=22% Similarity=0.374 Sum_probs=35.8
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHH------------------HHHHHHHHHHHHHHHHH
Q psy1302 27 QEVQAKNKKLQ-KIYSKYEEVKQDIQDIMDEFNR------------------DRRDLEQSQDELLKDLK 76 (225)
Q Consensus 27 eEve~KtkkLk-Kl~~kl~~~k~Ei~Dlq~E~~~------------------ERedll~tir~l~relk 76 (225)
+-|++++.||+ ||-.||++-|.-+.-|..--+. +=|-|++-.|+|+.+|.
T Consensus 307 ds~e~q~hKLRLKLLKKLKAKKkKLAsL~s~~~~g~~~se~~e~~sq~gS~nd~eslqdlL~ELQ~qID 375 (520)
T PF15509_consen 307 DSVEDQTHKLRLKLLKKLKAKKKKLASLMSSPQNGKPPSENLEHVSQCGSPNDCESLQDLLNELQYQID 375 (520)
T ss_pred CcchhhHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCCccccccCCCCCCCCchHHHHHHHHHHHHhhh
Confidence 44788888887 8888999888888888765443 44556666666666654
No 448
>KOG3859|consensus
Probab=24.11 E-value=6.3e+02 Score=24.04 Aligned_cols=29 Identities=10% Similarity=0.375 Sum_probs=22.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 48 QDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 48 ~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
.....+...|+.|+..|++.+|+|+-+..
T Consensus 366 ~kf~~lkr~h~eEk~kle~~rr~Leee~~ 394 (406)
T KOG3859|consen 366 EKFDRLKRLHQEEKKKLEEKRKQLEEEVN 394 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778899999999999999987753
No 449
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=24.10 E-value=7.8e+02 Score=25.13 Aligned_cols=48 Identities=15% Similarity=0.408 Sum_probs=23.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH---HhcCCh
Q psy1302 40 YSKYEEVKQDIQDIMDEFNRDRRDLEQSQ--------DELLKDLKLRKLII---ENFIPI 88 (225)
Q Consensus 40 ~~kl~~~k~Ei~Dlq~E~~~ERedll~ti--------r~l~relkLk~lII---d~FIP~ 88 (225)
..+|..+...+.+++. ...++..|+.++ |.++....||..+. +.|+.-
T Consensus 121 EerL~ELE~~le~~~e-~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~l 179 (617)
T PF15070_consen 121 EERLAELEEELERLQE-QQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKL 179 (617)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333 333555555543 44555556666664 345553
No 450
>KOG3856|consensus
Probab=24.07 E-value=1.7e+02 Score=24.06 Aligned_cols=32 Identities=22% Similarity=0.591 Sum_probs=24.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 42 KYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKL 77 (225)
Q Consensus 42 kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkL 77 (225)
-|.+.++|+.++- ..|++++++.-.|++++=-
T Consensus 11 ~ye~~kaEL~eli----kkrqe~eetl~nLe~qIY~ 42 (135)
T KOG3856|consen 11 SYEDTKAELAELI----KKRQELEETLANLERQIYA 42 (135)
T ss_pred chHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3667778887664 4788899999999888643
No 451
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=23.92 E-value=5.1e+02 Score=22.91 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=11.3
Q ss_pred HHHHHHHhccccccCCcccc
Q psy1302 90 ELKRLEQRLVYDEESSQWNI 109 (225)
Q Consensus 90 e~~kI~~~a~wdEe~~~W~l 109 (225)
++.+....+.=++|...|+-
T Consensus 226 ~~~~~l~~id~~~Di~~fv~ 245 (261)
T cd07674 226 EFKQNVENVGVENLIRKFAE 245 (261)
T ss_pred HHHHHHHhCCHHHHHHHHHH
Confidence 44555555666666666653
No 452
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=23.90 E-value=2.1e+02 Score=20.42 Aligned_cols=16 Identities=6% Similarity=0.526 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHhH
Q psy1302 35 KLQKIYSKYEEVKQDI 50 (225)
Q Consensus 35 kLkKl~~kl~~~k~Ei 50 (225)
+++++......++.|+
T Consensus 39 ~~~~l~~en~~L~~ei 54 (85)
T TIGR02209 39 EIDKLQKEWRDLQLEV 54 (85)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 453
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=23.75 E-value=8.8e+02 Score=25.58 Aligned_cols=19 Identities=11% Similarity=0.312 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q psy1302 39 IYSKYEEVKQDIQDIMDEF 57 (225)
Q Consensus 39 l~~kl~~~k~Ei~Dlq~E~ 57 (225)
|..+|..+..|+..|+-|+
T Consensus 139 l~~~l~~~eken~~Lkye~ 157 (769)
T PF05911_consen 139 LMARLESTEKENSSLKYEL 157 (769)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 454
>PF06401 Alpha-2-MRAP_C: Alpha-2-macroglobulin RAP, C-terminal domain ; InterPro: IPR010483 The alpha-2-macroglobulin receptor-associated protein (RAP) is a intracellular glycoprotein that binds to the 2-macroglobulin receptor and other members of the low density lipoprotein receptor family. The protein inhibits binding of all currently known ligands of these receptors []. Two different studies have provided conflicting domain boundaries.; GO: 0008201 heparin binding, 0050750 low-density lipoprotein particle receptor binding, 0005783 endoplasmic reticulum; PDB: 2FCW_A 2P03_A 2FTU_A 2P01_A.
Probab=23.70 E-value=1e+02 Score=27.31 Aligned_cols=27 Identities=30% Similarity=0.620 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHH----HhHHHHHHHHHH
Q psy1302 33 NKKLQKIYSKYEEVK----QDIQDIMDEFNR 59 (225)
Q Consensus 33 tkkLkKl~~kl~~~k----~Ei~Dlq~E~~~ 59 (225)
-++|.|||.|-+.+- .|+..|..||.-
T Consensus 5 D~kL~KLW~kA~~sGkFt~eEL~~Lk~Ef~h 35 (214)
T PF06401_consen 5 DKKLNKLWHKAETSGKFTDEELDKLKEEFQH 35 (214)
T ss_dssp SHHHHHHHHHHHHHS---CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 378999999998865 899999999873
No 455
>PHA00727 hypothetical protein
Probab=23.35 E-value=4.2e+02 Score=23.71 Aligned_cols=37 Identities=24% Similarity=0.560 Sum_probs=25.4
Q ss_pred HhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1302 12 EESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQD 49 (225)
Q Consensus 12 Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~E 49 (225)
.+...++..+|...|-.+.+ .|-||+||.-|..-+-|
T Consensus 17 aqsleelkqkyee~qkqi~d-gk~lkrlykvyekrefe 53 (278)
T PHA00727 17 AQSLEELKQKYEEAQKQIAD-GKTLKRLYKVYEKREFE 53 (278)
T ss_pred cccHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHH
Confidence 45677888999988888765 45677777766543333
No 456
>PRK14147 heat shock protein GrpE; Provisional
Probab=23.29 E-value=2.9e+02 Score=23.38 Aligned_cols=38 Identities=21% Similarity=0.447 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 39 IYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 39 l~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
+..++..++.|+.+++..|.|-.-|+..-.+...||..
T Consensus 23 l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e 60 (172)
T PRK14147 23 LKAEVESLRSEIALVKADALRERADLENQRKRIARDVE 60 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 457
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=23.18 E-value=6.6e+02 Score=27.01 Aligned_cols=93 Identities=10% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLII 82 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lII 82 (225)
++.+.+...+.....++..|.+.++......+.+..+...+..+...+.+++.++......+...+... -+.--..+.
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~--~f~~~~~~~ 770 (1047)
T PRK10246 693 QLTPLLETLPQSDDLPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQAS--VFDDQQAFL 770 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCHHHHH
Q ss_pred HhcCChHHHHHHHHh
Q psy1302 83 ENFIPIEELKRLEQR 97 (225)
Q Consensus 83 d~FIP~ee~~kI~~~ 97 (225)
..+++.++++.+...
T Consensus 771 ~~~~~~~~~~~l~~~ 785 (1047)
T PRK10246 771 AALLDEETLTQLEQL 785 (1047)
T ss_pred HHcCCHHHHHHHHHH
No 458
>smart00338 BRLZ basic region leucin zipper.
Probab=23.09 E-value=2.6e+02 Score=19.24 Aligned_cols=56 Identities=13% Similarity=0.302 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEF 57 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~ 57 (225)
+.+.+--...-..+.--...-..|+.+|...+.....|..++..+..|+..+..++
T Consensus 8 rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 8 RRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 459
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=23.07 E-value=2.2e+02 Score=23.66 Aligned_cols=52 Identities=12% Similarity=0.385 Sum_probs=0.0
Q ss_pred hhcCCHHHHHHHHHHHHH------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 20 GNYSTLEQEVQAKNKKLQ------------KIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDEL 71 (225)
Q Consensus 20 ~~yssLQeEve~KtkkLk------------Kl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l 71 (225)
.++..|+.|+...++.+. |+..++..+..|++.++.+...++.-....+...
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~ 103 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKV 103 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 460
>PF14182 YgaB: YgaB-like protein
Probab=23.07 E-value=2.5e+02 Score=21.25 Aligned_cols=41 Identities=20% Similarity=0.379 Sum_probs=0.0
Q ss_pred HhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1302 10 KKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDI 50 (225)
Q Consensus 10 ~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei 50 (225)
+++...+.-+....++++|+..+.+.|+.+......--.|+
T Consensus 30 E~eL~~l~~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe~QTeeV 70 (79)
T PF14182_consen 30 EKELKELEREAELHSIQEEISQMKKELKEIQRVFEKQTEEV 70 (79)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 461
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=23.06 E-value=5.1e+02 Score=22.64 Aligned_cols=76 Identities=16% Similarity=0.302 Sum_probs=0.0
Q ss_pred ChHHHHHHHHhHhhHHHHHhhcCCHHHHHHHH------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 1 MIEMKQELDKKEESTEEIRGNYSTLEQEVQAK------NKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKD 74 (225)
Q Consensus 1 ~~el~qele~~Eee~~~le~~yssLQeEve~K------tkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~re 74 (225)
+...+..+........-..++|.+.-.|++.. .+.+.|+..|+..++++....-..++..|.+++......-..
T Consensus 111 ~~k~~~~~~~~~~~l~KaK~~Y~~~c~e~e~~~~~~~s~k~~eK~~~K~~ka~~~Y~~~v~~~~~~~~~~~~~m~~~~~~ 190 (261)
T cd07648 111 TAEAVQAIQTTTAALQKAKEAYHARCLELERLRRENASPKEIEKAEAKLKKAQDEYKALVEKYNNIRADFETKMTDSCKR 190 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q psy1302 75 LK 76 (225)
Q Consensus 75 lk 76 (225)
+.
T Consensus 191 ~Q 192 (261)
T cd07648 191 FQ 192 (261)
T ss_pred HH
No 462
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.05 E-value=5.6e+02 Score=23.04 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------HHHHHHHH-HHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR--------DLEQSQDE-LLKD 74 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERe--------dll~tir~-l~re 74 (225)
|+.=|..+++..++.|+ +.|.+..++.++.||..++..++.++.-...+-.+|-+ |+-++... -.++
T Consensus 148 lk~vlK~RdqkQ~d~E~----l~E~l~~rre~~~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~~K~~e~k~~l~~~Ad~~ 223 (240)
T cd07667 148 MKNVLKKRDQVQAEYEA----KLEAVALRKEERPKVPTDVEKCQDRVECFNADLKADMERWQNNKRQDFRQLLMGMADKN 223 (240)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhc
Q psy1302 75 LKLRKLIIENF 85 (225)
Q Consensus 75 lkLk~lIId~F 85 (225)
+.+++-|++.+
T Consensus 224 i~fy~~~~~~W 234 (240)
T cd07667 224 IQYYEKCLTAW 234 (240)
T ss_pred HHHHHHHHHHH
No 463
>PRK14139 heat shock protein GrpE; Provisional
Probab=22.92 E-value=3.5e+02 Score=23.31 Aligned_cols=41 Identities=15% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 36 LQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 36 LkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
+..+..++..++.++.++.+.|.|-.-|+..--+...||..
T Consensus 34 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e 74 (185)
T PRK14139 34 APALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVA 74 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 464
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=22.91 E-value=5.9e+02 Score=28.36 Aligned_cols=75 Identities=12% Similarity=0.143 Sum_probs=0.0
Q ss_pred ChHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 1 MIEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDL 75 (225)
Q Consensus 1 ~~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~rel 75 (225)
..+.+++++..++.....++....+++++.....++..+-..+...-.+|..--.+..++..++...+..+.+++
T Consensus 877 ~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~ 951 (1353)
T TIGR02680 877 AAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEAL 951 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 465
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=22.89 E-value=4.9e+02 Score=26.64 Aligned_cols=68 Identities=9% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1302 17 EIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEF-----NRDRRDLEQSQDELLKDLKLRKLIIEN 84 (225)
Q Consensus 17 ~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~-----~~ERedll~tir~l~relkLk~lIId~ 84 (225)
.++.+....+.-++...++|..+..++..++..+++-+.++ ..+-+.+++.+.++..++.........
T Consensus 257 ~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~ 329 (726)
T PRK09841 257 NIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAE 329 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
No 466
>PLN02320 seryl-tRNA synthetase
Probab=22.84 E-value=2.5e+02 Score=28.01 Aligned_cols=59 Identities=12% Similarity=0.246 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHhhHHHHHhhcC--CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYS--TLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRD 60 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~ys--sLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~E 60 (225)
++++.+++....++..+-++.. .-.++++......+.|..++..++.++..+++++...
T Consensus 103 r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 103 LALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 467
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus. The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....
Probab=22.78 E-value=3.2e+02 Score=23.90 Aligned_cols=39 Identities=18% Similarity=0.466 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 37 QKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDL 75 (225)
Q Consensus 37 kKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~rel 75 (225)
++--..|+.++.++..++.+|.+++..|+.....+.+.+
T Consensus 1 ~~~i~~L~~~q~~~~~l~~~~~~e~~~le~ky~~~~~pl 39 (244)
T PF00956_consen 1 KQRIEALKKLQEELDELEKEFEEEIHELERKYNKLYKPL 39 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
No 468
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=22.77 E-value=4.2e+02 Score=21.52 Aligned_cols=66 Identities=17% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Q psy1302 25 LEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPIEEL 91 (225)
Q Consensus 25 LQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~ee~ 91 (225)
+-.+-...++++|.+-..+-.+-..+.+-+.-|.+-=+.|.. |+++...|.-.+.+++..+|.-|.
T Consensus 47 Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~k-v~els~~L~~~~~lL~~~v~~ie~ 112 (131)
T PF10158_consen 47 VAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEK-VNELSQQLSRCQSLLNQTVPSIET 112 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
No 469
>KOG0964|consensus
Probab=22.72 E-value=8e+02 Score=26.99 Aligned_cols=84 Identities=20% Similarity=0.394 Sum_probs=0.0
Q ss_pred ChHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 1 MIEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDI---MDEFNRDRRDLEQSQDELLKDLKL 77 (225)
Q Consensus 1 ~~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dl---q~E~~~ERedll~tir~l~relkL 77 (225)
++++.+-+...-+....+...+.++.-+...+-.+++++-.-+...+.++.+. ..+-.++++++.+.-..|=||=+-
T Consensus 399 i~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~ 478 (1200)
T KOG0964|consen 399 IEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKK 478 (1200)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHh
Q psy1302 78 RKLIIEN 84 (225)
Q Consensus 78 k~lIId~ 84 (225)
....|++
T Consensus 479 l~~~i~~ 485 (1200)
T KOG0964|consen 479 LRSLIAN 485 (1200)
T ss_pred HHHHHHH
No 470
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=22.67 E-value=6.5e+02 Score=23.65 Aligned_cols=76 Identities=14% Similarity=0.251 Sum_probs=0.0
Q ss_pred ChHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHH---------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy1302 1 MIEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKL---------------QKIYSKYEEVKQDIQDIMDEFNRDRRDLE 65 (225)
Q Consensus 1 ~~el~qele~~Eee~~~le~~yssLQeEve~KtkkL---------------kKl~~kl~~~k~Ei~Dlq~E~~~ERedll 65 (225)
+..|+++......+.........+|++|+...+..- ..|..++++++.|-.+|...|++|=+-|-
T Consensus 29 ~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~lt 108 (310)
T PF09755_consen 29 IESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLT 108 (310)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q psy1302 66 QSQDELLKDLK 76 (225)
Q Consensus 66 ~tir~l~relk 76 (225)
.++-.--.+|.
T Consensus 109 n~L~rkl~qLr 119 (310)
T PF09755_consen 109 NDLSRKLNQLR 119 (310)
T ss_pred HHHHHHHHHHH
No 471
>KOG4657|consensus
Probab=22.61 E-value=5.8e+02 Score=23.10 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLII 82 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lII 82 (225)
+..++|....++...+.+.+.+-+.|....++-+.+-.....-+.+||.++|+ +-+-|+-.+-.|.-|+.=+.-||
T Consensus 48 efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~----elEvl~~n~Q~lkeE~dd~keiI 123 (246)
T KOG4657|consen 48 EFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQS----ELEVLRRNLQLLKEEKDDSKEII 123 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHH
Q ss_pred H
Q psy1302 83 E 83 (225)
Q Consensus 83 d 83 (225)
.
T Consensus 124 s 124 (246)
T KOG4657|consen 124 S 124 (246)
T ss_pred H
No 472
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=22.46 E-value=3.1e+02 Score=19.87 Aligned_cols=84 Identities=15% Similarity=0.302 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLE-----QEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQ-----eEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
.+...+|..-+.....+...+.+.. ..+.....-+..|-..+...+.++..+..+...-|+.+.+..++...=-+
T Consensus 15 ~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~ 94 (123)
T PF02050_consen 15 QEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEK 94 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhc
Q psy1302 77 LRKLIIENF 85 (225)
Q Consensus 77 Lk~lIId~F 85 (225)
|+..-...|
T Consensus 95 L~e~~~~~~ 103 (123)
T PF02050_consen 95 LKERRREEY 103 (123)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 473
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=22.39 E-value=3.3e+02 Score=26.52 Aligned_cols=56 Identities=16% Similarity=0.343 Sum_probs=0.0
Q ss_pred ChHHHHHHHHhHhhHHHHHhhcCC---------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1302 1 MIEMKQELDKKEESTEEIRGNYST---------LEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDE 56 (225)
Q Consensus 1 ~~el~qele~~Eee~~~le~~yss---------LQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E 56 (225)
+.-+++.+.+-+++....++...+ ++.+.+...+.+..|..++.-++..+.++...
T Consensus 165 ~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~ 229 (475)
T PF10359_consen 165 IELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDS 229 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 474
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=22.39 E-value=5.9e+02 Score=23.07 Aligned_cols=77 Identities=5% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy1302 17 EIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQ 96 (225)
Q Consensus 17 ~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~ee~~kI~~ 96 (225)
+++..+..++-++......+..+...+...+.++..++.+...-+..+....+.+.|--+|.. ..+|+..+++..+.
T Consensus 83 ~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~---~g~vS~~~~~~a~~ 159 (346)
T PRK10476 83 PYELTVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLA---KGYVSAQQVDQART 159 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCcCHHHHHHHHH
No 475
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=22.21 E-value=3.5e+02 Score=20.34 Aligned_cols=70 Identities=20% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 6 QELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSK---YEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDL 75 (225)
Q Consensus 6 qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~k---l~~~k~Ei~Dlq~E~~~ERedll~tir~l~rel 75 (225)
.++-+..+++-.+.....+|+.+-...++.+.++... ...++.+...+..+...=-..+...-.++..-+
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>KOG0993|consensus
Probab=22.19 E-value=5.5e+02 Score=25.44 Aligned_cols=101 Identities=13% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVK-QDIQDIMDEFNR----DRRDLEQSQDELLKDLKL 77 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k-~Ei~Dlq~E~~~----ERedll~tir~l~relkL 77 (225)
+|-..+.+.|--.....-.=++-+|+|.+..+.-.--..-++.+. .=+.+.+.+|.. +|..+.+.-+.+.||++-
T Consensus 46 ql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k~~~~~ye~q~~~~leqertq~qq~~e~~erEv~~ 125 (542)
T KOG0993|consen 46 QLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQASQKSPNPTYECQMCQNLEQERTQLQQNEEKLEREVKA 125 (542)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhcCChHHHHHHHHhcccccc
Q psy1302 78 RKLIIENFIPIEELKRLEQRLVYDEE 103 (225)
Q Consensus 78 k~lIId~FIP~ee~~kI~~~a~wdEe 103 (225)
...++..-.|.+.+++=+..++=|++
T Consensus 126 l~~llsr~~~~~~Lenem~ka~Ed~e 151 (542)
T KOG0993|consen 126 LMELLSRGQYQLDLENEMDKAKEDEE 151 (542)
T ss_pred HHHHHhccchhhhhHHHHHHHHhhHH
No 477
>PRK10698 phage shock protein PspA; Provisional
Probab=21.97 E-value=5.1e+02 Score=22.62 Aligned_cols=58 Identities=12% Similarity=0.152 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNR 59 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ 59 (225)
++--.+...-++....++..|...+..++..+..+.+|..+|..++..-.-|-.-++.
T Consensus 88 r~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~ 145 (222)
T PRK10698 88 RAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQA 145 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 478
>PRK05560 DNA gyrase subunit A; Validated
Probab=21.96 E-value=82 Score=32.90 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=0.0
Q ss_pred hhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1302 13 ESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR 61 (225)
Q Consensus 13 ee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ER 61 (225)
.+...+++.+..|++|++....-|..-...++-++.|+.++...|..+|
T Consensus 430 ~e~~kL~~E~~~l~~ei~~l~~iL~~~~~l~~~i~~EL~~ikkkfg~~R 478 (805)
T PRK05560 430 LERDKIEDEYKELLALIADLKDILASPERLLEIIKEELLEIKEKFGDPR 478 (805)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCC
No 479
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=21.90 E-value=5.7e+02 Score=22.75 Aligned_cols=67 Identities=21% Similarity=0.306 Sum_probs=0.0
Q ss_pred hcCCHHHHH--------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCh
Q psy1302 21 NYSTLEQEV--------QAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR---DLEQSQDELLKDLKLRKLIIENFIPI 88 (225)
Q Consensus 21 ~yssLQeEv--------e~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERe---dll~tir~l~relkLk~lIId~FIP~ 88 (225)
+.++|++=+ -.....|.++..-+.++..-+.++..+-+++++ .+-+-+..+.++.+..+.|.+| +|+
T Consensus 1 ki~~~~~~~~~r~~~~~~~~~~~L~~i~~~~~~i~~~l~~~~~~l~~~~~~~~~lk~l~~~~~~~~~~l~hl~~n-vP~ 78 (243)
T PF07160_consen 1 KISELKELLSLRNMGQDPNLKDTLSKIDQEVSAIEELLNDIEQELQREEEALPKLKELMESSEEQQKKLQHLKEN-VPP 78 (243)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred ChHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC
No 480
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=21.84 E-value=6.9e+02 Score=25.41 Aligned_cols=73 Identities=12% Similarity=0.199 Sum_probs=0.0
Q ss_pred ChHHHHHHHHhHhh-HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH----------HHhHHHHHHHHHHHHHHHHHHHH
Q psy1302 1 MIEMKQELDKKEES-TEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEV----------KQDIQDIMDEFNRDRRDLEQSQD 69 (225)
Q Consensus 1 ~~el~qele~~Eee-~~~le~~yssLQeEve~KtkkLkKl~~kl~~~----------k~Ei~Dlq~E~~~ERedll~tir 69 (225)
+..++.+++.-+.. ..++...-++++.+++.-..+.+.|...+..+ ..|+.+|+.+++.-+.-|..-..
T Consensus 318 v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~ 397 (754)
T TIGR01005 318 VVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLT 397 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q psy1302 70 ELLK 73 (225)
Q Consensus 70 ~l~r 73 (225)
.++.
T Consensus 398 r~~e 401 (754)
T TIGR01005 398 NYRQ 401 (754)
T ss_pred HHHH
No 481
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=21.71 E-value=4.2e+02 Score=26.08 Aligned_cols=54 Identities=4% Similarity=0.071 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 23 STLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 23 ssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
+.+.+..+.....++.+...|..++..+.+--.....+.-.++..|..|.+++.
T Consensus 131 ~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~ 184 (547)
T PRK08147 131 QALIGKAEGLVNQFKTTDQYLRDQDKGVNTAIGSSVDQINNYAKQIASLNDQIT 184 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>KOG2896|consensus
Probab=21.68 E-value=7.3e+02 Score=23.93 Aligned_cols=76 Identities=21% Similarity=0.297 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHhhHHH--------HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEE--------IRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLK 73 (225)
Q Consensus 2 ~el~qele~~Eee~~~--------le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~r 73 (225)
++|...-+++-....+ ++.+..-.+|.+..+.-.++|+..+++.....+.--|..++.++..|.+--.+|.-
T Consensus 94 ~~~~~v~~ek~rl~~~~i~~~iL~~~~~l~~~~Ealsk~~~~~~k~~~kL~~kr~q~~~~q~~l~k~~k~l~e~~~~l~a 173 (377)
T KOG2896|consen 94 VEMKEVSEEKLRLQIECIQLKILVLESNLQRQIEALSKKRAHLEKTKQKLEDKRQQFNASQVKLQKQLKSLIELRNELVA 173 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred HHHH
Q psy1302 74 DLKL 77 (225)
Q Consensus 74 elkL 77 (225)
..++
T Consensus 174 ~re~ 177 (377)
T KOG2896|consen 174 KREL 177 (377)
T ss_pred HHHh
No 483
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=21.60 E-value=3.1e+02 Score=19.57 Aligned_cols=57 Identities=16% Similarity=0.352 Sum_probs=0.0
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 20 GNYSTLEQEVQAKNKKLQKIYSKYE----------EVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 20 ~~yssLQeEve~KtkkLkKl~~kl~----------~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
..+++++..+...+..+.++..... .++.||..+..+....-..+-..|+.+.....
T Consensus 7 ~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~ 73 (103)
T PF00804_consen 7 DEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNE 73 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 484
>KOG3915|consensus
Probab=21.50 E-value=8.3e+02 Score=24.64 Aligned_cols=61 Identities=15% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1302 25 LEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENF 85 (225)
Q Consensus 25 LQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~F 85 (225)
|....-....-+......-++++.|-.+|..+|-||||=-+.--|+|.-|.||..++-..|
T Consensus 505 l~niq~llkva~dnar~qekQiq~Ek~ELkmd~lrerelreslekql~~ErklR~~~qkr~ 565 (641)
T KOG3915|consen 505 LTNIQGLLKVAIDNARAQEKQIQLEKTELKMDFLRERELRESLEKQLAMERKLRAIVQKRL 565 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=21.50 E-value=2.8e+02 Score=20.71 Aligned_cols=52 Identities=12% Similarity=0.281 Sum_probs=0.0
Q ss_pred hhHHHHHhhcCCHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy1302 13 ESTEEIRGNYSTLEQEVQAKNKKLQK---IYSKYEEVKQDIQDIMDEFNRDRRDLE 65 (225)
Q Consensus 13 ee~~~le~~yssLQeEve~KtkkLkK---l~~kl~~~k~Ei~Dlq~E~~~ERedll 65 (225)
+....+..|..+||..|+.....+.. +-.|+.++-.-+.+++.... +..++|
T Consensus 11 ~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~-~I~~iL 65 (75)
T PF05531_consen 11 QDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVN-EIQDIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
No 486
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=21.37 E-value=3.9e+02 Score=25.57 Aligned_cols=63 Identities=10% Similarity=0.258 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQE----VQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDL 64 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeE----ve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedl 64 (225)
|++..+++....++..+-+....+... ++....+.+.+..+++.++.++..+++++......+
T Consensus 40 r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 40 KKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 487
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=21.34 E-value=1.2e+02 Score=22.06 Aligned_cols=31 Identities=23% Similarity=0.550 Sum_probs=0.0
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 17 EIRGNYSTLEQEVQAKNKKLQKIYSKYEEVK 47 (225)
Q Consensus 17 ~le~~yssLQeEve~KtkkLkKl~~kl~~~k 47 (225)
+.+..|-.|+-+++.+++-...|.+++++++
T Consensus 1 ~~qq~~l~L~R~~~~~~~~Y~~Ll~r~~e~~ 31 (82)
T PF13807_consen 1 DTQQEYLRLQRDVEIKRELYETLLQRYEEAR 31 (82)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=21.30 E-value=3.9e+02 Score=20.60 Aligned_cols=43 Identities=9% Similarity=0.292 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy1302 24 TLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQ 66 (225)
Q Consensus 24 sLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~ 66 (225)
++.+-.+...++++.+...+..+...+..++.++..=...+..
T Consensus 83 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~ 125 (126)
T TIGR00293 83 DAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQQ 125 (126)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 489
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=21.22 E-value=3.8e+02 Score=20.50 Aligned_cols=88 Identities=20% Similarity=0.302 Sum_probs=0.0
Q ss_pred ChHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 1 MIEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKL 80 (225)
Q Consensus 1 ~~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~l 80 (225)
+..-..+|..++....+--.+|+..-.+.+.++.+-.+-...=...+.+...--.....+...|...|..+...+.-+..
T Consensus 30 ~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~ 109 (126)
T PF13863_consen 30 LKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKK 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H---HHhcCCh
Q psy1302 81 I---IENFIPI 88 (225)
Q Consensus 81 I---Id~FIP~ 88 (225)
. ++.++|.
T Consensus 110 Y~~fL~~v~~~ 120 (126)
T PF13863_consen 110 YEEFLEKVVPK 120 (126)
T ss_pred HHHHHHHhccc
No 490
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=21.18 E-value=5.4e+02 Score=25.90 Aligned_cols=52 Identities=13% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 25 LEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 25 LQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
+.+-.+..+..++.++..|+.++..+.+--..-..+.-.|+..|..|.+++.
T Consensus 136 vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vNsLl~qIa~lN~qI~ 187 (552)
T COG1256 136 VLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQIADLNKQIR 187 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>KOG0976|consensus
Probab=21.15 E-value=5.6e+02 Score=27.70 Aligned_cols=73 Identities=16% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
++..+.+.+-+..+....---+.+|+.+|+.-|-..+.-|..-..+|.|+..+|+.--+|.-..-+.+..-++
T Consensus 132 ~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~ 204 (1265)
T KOG0976|consen 132 AQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLE 204 (1265)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=20.94 E-value=5.5e+02 Score=28.13 Aligned_cols=74 Identities=14% Similarity=0.261 Sum_probs=0.0
Q ss_pred ChHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 1 MIEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKD 74 (225)
Q Consensus 1 ~~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~re 74 (225)
+..++++|+.+..+....+.......++.+.-..--..+.++..++++++..++.+.......-.+.......+
T Consensus 151 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (1123)
T PRK11448 151 VLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRKEITDQ 224 (1123)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
No 493
>PRK14150 heat shock protein GrpE; Provisional
Probab=20.78 E-value=5.5e+02 Score=22.10 Aligned_cols=77 Identities=21% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhcCChHH
Q psy1302 17 EIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDL------KLRKLIIENFIPIEE 90 (225)
Q Consensus 17 ~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~rel------kLk~lIId~FIP~ee 90 (225)
+.+.......++.+..+.++..|..++..++. +++..|.|-.-|+..--+...|+. ....++.+-+-..+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~---~~kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~Dn 100 (193)
T PRK14150 24 QEEADEAELEDELDEADARIAELEAQLAEAQA---EERDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVIDN 100 (193)
T ss_pred hhhhcccccchhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q ss_pred HHHHHH
Q psy1302 91 LKRLEQ 96 (225)
Q Consensus 91 ~~kI~~ 96 (225)
+++...
T Consensus 101 lerAl~ 106 (193)
T PRK14150 101 LERALQ 106 (193)
T ss_pred HHHHHh
No 494
>PRK14145 heat shock protein GrpE; Provisional
Probab=20.74 E-value=5.7e+02 Score=22.27 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=0.0
Q ss_pred HhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 12 EESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLK 73 (225)
Q Consensus 12 Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~r 73 (225)
+.+.......=.+...+++....+|.++..++..++....-++.+|+.=|.-.......+.+
T Consensus 30 ~~~~~~~~~~~~~~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~ 91 (196)
T PRK14145 30 EDEQAQQNQPQQQTVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVE 91 (196)
T ss_pred HHHHHhhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=20.71 E-value=6.1e+02 Score=22.61 Aligned_cols=72 Identities=13% Similarity=0.202 Sum_probs=0.0
Q ss_pred hHHHHHHHH-hHhhHHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDK-KEESTEEIRGNYSTLEQEVQAKNKKLQKIYS---KYEEVKQDIQDIMDEFNRDRRDLEQSQDELLK 73 (225)
Q Consensus 2 ~el~qele~-~Eee~~~le~~yssLQeEve~KtkkLkKl~~---kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~r 73 (225)
.+|..++.. ...+..-+..+|..+-++++..++|..+... +-.-++.-......+...=+.+++-.|+...+
T Consensus 115 ~kl~~e~~~~~~~~l~K~K~~Y~~~~~~~e~ar~K~~~a~~~gk~~~Ka~~k~~~~~~km~~~kN~Yll~i~~aN~ 190 (234)
T cd07686 115 QQIEAEMYKVTKTELEKLKCSYRQLTKEVNSAKEKYKDAVAKGKETEKARERYDKATMKLHMLHNQYVLAVKGAQL 190 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
No 496
>KOG4657|consensus
Probab=20.68 E-value=6.4e+02 Score=22.85 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=0.0
Q ss_pred ChHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 1 MIEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 1 ~~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
+++-+-++...-+-..+-++.-.-+.+|+.++..+|.-+...+|-++.|..|..+-....|+-+.-.+..-.+-..
T Consensus 67 l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~~kRkQ 142 (246)
T KOG4657|consen 67 LRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAKENAGKRKQ 142 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
No 497
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=20.61 E-value=3.8e+02 Score=20.22 Aligned_cols=47 Identities=13% Similarity=0.386 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1302 24 TLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDE 70 (225)
Q Consensus 24 sLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~ 70 (225)
|+.+-++...++++.+...+..+..++..++.....=...+..-...
T Consensus 74 s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 120 (120)
T PF02996_consen 74 SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQQ 120 (120)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 498
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=20.52 E-value=4.7e+02 Score=28.78 Aligned_cols=80 Identities=20% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHHhHhhHHHHHhhcCCHHH-HHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHH--
Q psy1302 6 QELDKKEESTEEIRGNYSTLEQ-EVQAKNKKLQKIYSK-YEEVKQDIQDIMDEFNR-----DRRDLEQSQDELLKDLK-- 76 (225)
Q Consensus 6 qele~~Eee~~~le~~yssLQe-Eve~KtkkLkKl~~k-l~~~k~Ei~Dlq~E~~~-----ERedll~tir~l~relk-- 76 (225)
+++...=+....++..|.+|-+ |+..||..+|...++ ......+|.++..+... +|+++...|..|.++..
T Consensus 18 k~~~~~v~kIn~le~~~~~LSDeeLr~kT~efk~rl~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~id~~~~~~~~~ 97 (1112)
T PRK12901 18 KEIQPIVEKIKAEYPELEALSNDELRAKTDEFKQYIKEAVADIDAKIEELKAEAIESLDIDEREDIYAQIDKLEKEAYEI 97 (1112)
T ss_pred HHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHH
Q ss_pred ----HHHHHHHhc
Q psy1302 77 ----LRKLIIENF 85 (225)
Q Consensus 77 ----Lk~lIId~F 85 (225)
|-.++.+.|
T Consensus 98 ~~~~Ld~iLpEAF 110 (1112)
T PRK12901 98 LEKVLDEILPEAF 110 (1112)
T ss_pred HHhHHHHhHHHHH
No 499
>PRK14146 heat shock protein GrpE; Provisional
Probab=20.52 E-value=5e+02 Score=22.87 Aligned_cols=51 Identities=10% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcC
Q psy1302 36 LQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLI-IENFI 86 (225)
Q Consensus 36 LkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lI-Id~FI 86 (225)
...+...+..++.++.++.+.|.|-.-|+..--+...|+..-...- +.+|+
T Consensus 56 ~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~ 107 (215)
T PRK14146 56 ETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLV 107 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PRK14141 heat shock protein GrpE; Provisional
Probab=20.50 E-value=4.4e+02 Score=23.20 Aligned_cols=48 Identities=17% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcC
Q psy1302 39 IYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLI-IENFI 86 (225)
Q Consensus 39 l~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lI-Id~FI 86 (225)
+..++..++.++.+++..|.|-.-|+..--+...||..-...- +.+|+
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~ 84 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFA 84 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!