Query psy1302
Match_columns 225
No_of_seqs 143 out of 199
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 17:19:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x79_B RAB GTPase binding effe 93.4 1.7 5.7E-05 33.7 11.7 72 2-76 16-87 (112)
2 2avr_X Adhesion A; antiparalle 93.4 0.97 3.3E-05 35.4 10.4 64 22-85 29-101 (119)
3 3etw_A Adhesin A; antiparallel 92.7 0.86 2.9E-05 35.7 9.3 66 20-85 27-101 (119)
4 3ol1_A Vimentin; structural ge 92.7 1.9 6.6E-05 33.2 11.3 82 2-83 23-107 (119)
5 1ic2_A Tropomyosin alpha chain 90.8 3 0.0001 29.9 9.8 72 1-72 1-72 (81)
6 2dfs_A Myosin-5A; myosin-V, in 90.2 1.8 6.3E-05 44.7 11.3 65 19-83 976-1040(1080)
7 3swk_A Vimentin; cytoskeleton, 89.8 4.5 0.00015 29.5 11.2 79 1-79 2-83 (86)
8 3hnw_A Uncharacterized protein 89.5 1.1 3.8E-05 35.6 7.2 40 15-54 70-109 (138)
9 2v71_A Nuclear distribution pr 88.9 6.6 0.00022 32.9 11.8 79 4-82 22-104 (189)
10 3na7_A HP0958; flagellar bioge 88.1 3.7 0.00013 35.1 10.1 89 4-96 95-186 (256)
11 3hnw_A Uncharacterized protein 88.0 3.3 0.00011 32.8 9.1 7 43-49 105-111 (138)
12 3u1c_A Tropomyosin alpha-1 cha 87.1 7.7 0.00026 28.9 10.6 59 20-78 37-98 (101)
13 3u59_A Tropomyosin beta chain; 86.1 8.6 0.00029 28.5 10.6 60 19-78 36-98 (101)
14 2dfs_A Myosin-5A; myosin-V, in 84.6 6 0.0002 40.9 11.1 47 12-58 976-1022(1080)
15 3mtu_E Head morphogenesis prot 83.7 8.2 0.00028 27.9 8.4 63 14-76 10-72 (77)
16 3na7_A HP0958; flagellar bioge 83.6 5.1 0.00017 34.2 8.7 35 20-54 90-124 (256)
17 3htk_A Structural maintenance 82.9 4.7 0.00016 26.8 6.6 50 7-56 6-55 (60)
18 3bas_A Myosin heavy chain, str 82.7 7.2 0.00025 28.4 8.0 47 10-56 11-57 (89)
19 3bas_A Myosin heavy chain, str 81.3 13 0.00045 27.0 9.9 28 47-74 58-85 (89)
20 3oja_B Anopheles plasmodium-re 81.2 11 0.00037 35.1 10.7 50 26-75 508-560 (597)
21 2v4h_A NF-kappa-B essential mo 81.2 16 0.00055 28.1 9.7 72 3-78 28-102 (110)
22 3mq7_A Bone marrow stromal ant 80.5 18 0.00063 28.1 10.8 69 4-76 30-102 (121)
23 2fxo_A Myosin heavy chain, car 79.7 19 0.00064 27.7 10.3 54 12-65 12-65 (129)
24 3tnu_A Keratin, type I cytoske 78.8 12 0.00041 28.9 8.6 34 42-75 60-93 (131)
25 3lay_A Zinc resistance-associa 78.3 14 0.00048 30.3 9.2 47 23-69 88-141 (175)
26 1wt6_A Myotonin-protein kinase 77.8 8.2 0.00028 28.2 6.7 42 24-65 28-69 (81)
27 4emc_A Monopolin complex subun 77.1 6.6 0.00023 32.9 6.9 54 5-58 12-65 (190)
28 3vp9_A General transcriptional 76.8 15 0.0005 27.4 8.1 59 18-76 19-85 (92)
29 2v71_A Nuclear distribution pr 76.4 18 0.00061 30.2 9.4 36 14-49 50-85 (189)
30 1deq_A Fibrinogen (alpha chain 75.9 23 0.0008 32.6 10.8 32 54-85 115-146 (390)
31 1i84_S Smooth muscle myosin he 74.8 8.2 0.00028 39.9 8.4 24 14-37 879-902 (1184)
32 3nmd_A CGMP dependent protein 73.3 4 0.00014 29.3 4.0 12 64-75 52-63 (72)
33 3s9g_A Protein hexim1; cyclin 72.8 13 0.00043 28.2 6.8 50 13-62 37-86 (104)
34 1wt6_A Myotonin-protein kinase 72.6 17 0.00058 26.5 7.3 52 22-77 16-70 (81)
35 3tnu_B Keratin, type II cytosk 72.6 15 0.00051 28.2 7.6 32 44-75 60-91 (129)
36 3q8t_A Beclin-1; autophagy, AT 72.3 27 0.00091 25.8 10.2 45 6-50 25-69 (96)
37 2eqb_B RAB guanine nucleotide 72.1 29 0.00098 26.1 10.6 73 4-76 10-93 (97)
38 4h22_A Leucine-rich repeat fli 72.0 4.2 0.00014 31.0 4.1 38 17-54 41-78 (103)
39 3m91_A Proteasome-associated A 71.3 9.5 0.00032 25.4 5.3 40 19-58 8-47 (51)
40 2efk_A CDC42-interacting prote 70.0 44 0.0015 28.0 10.7 28 4-31 121-148 (301)
41 3u1c_A Tropomyosin alpha-1 cha 69.7 31 0.0011 25.5 9.4 31 4-34 7-37 (101)
42 4ani_A Protein GRPE; chaperone 69.4 24 0.00081 29.9 8.7 43 24-66 63-105 (213)
43 3haj_A Human pacsin2 F-BAR; pa 67.9 27 0.00093 32.3 9.6 71 4-74 141-239 (486)
44 1ic2_A Tropomyosin alpha chain 67.6 30 0.001 24.5 8.6 11 45-55 38-48 (81)
45 1x8y_A Lamin A/C; structural p 66.7 33 0.0011 24.7 9.6 67 10-83 14-80 (86)
46 3l4q_C Phosphatidylinositol 3- 66.7 20 0.00067 29.5 7.4 54 31-88 7-60 (170)
47 3mq9_A Bone marrow stromal ant 66.6 19 0.00065 32.6 8.1 18 4-21 402-419 (471)
48 2jee_A YIIU; FTSZ, septum, coi 66.3 35 0.0012 24.8 9.2 53 10-62 10-62 (81)
49 4etp_A Kinesin-like protein KA 65.0 15 0.0005 33.7 7.0 34 25-58 8-41 (403)
50 3csx_A Putative uncharacterize 65.0 4.9 0.00017 29.4 3.1 30 27-56 15-44 (81)
51 2js5_A Uncharacterized protein 64.3 4.9 0.00017 28.7 2.9 30 27-56 3-32 (71)
52 2xv5_A Lamin-A/C; structural p 63.5 37 0.0013 24.0 8.4 55 25-83 3-57 (74)
53 2q6q_A Spindle POLE BODY compo 62.7 36 0.0012 24.1 7.1 55 2-56 6-60 (74)
54 1deq_A Fibrinogen (alpha chain 62.6 52 0.0018 30.4 10.0 31 4-37 54-84 (390)
55 3mq7_A Bone marrow stromal ant 62.4 26 0.0009 27.2 6.9 42 24-65 61-102 (121)
56 3ol1_A Vimentin; structural ge 61.9 50 0.0017 25.1 8.6 51 15-65 64-114 (119)
57 3jsv_C NF-kappa-B essential mo 61.4 42 0.0014 25.1 7.6 57 3-63 6-62 (94)
58 3ghg_A Fibrinogen alpha chain; 61.4 25 0.00087 33.8 8.0 31 56-86 114-144 (562)
59 3qwe_A GMIP, GEM-interacting p 61.1 62 0.0021 28.4 10.0 63 5-67 125-210 (279)
60 2fxo_A Myosin heavy chain, car 60.9 53 0.0018 25.1 11.3 32 3-34 24-55 (129)
61 2v66_B Nuclear distribution pr 60.2 51 0.0017 25.2 8.2 7 16-22 20-26 (111)
62 3vkg_A Dynein heavy chain, cyt 59.9 30 0.001 39.9 9.5 8 106-113 2161-2168(3245)
63 3a7p_A Autophagy protein 16; c 59.6 68 0.0023 25.9 10.1 41 9-49 71-111 (152)
64 2v0o_A FCHO2, FCH domain only 58.3 77 0.0026 26.1 10.3 41 32-72 168-208 (276)
65 1m1j_B Fibrinogen beta chain; 57.5 1.2E+02 0.0041 28.5 11.8 10 127-136 266-275 (464)
66 3i00_A HIP-I, huntingtin-inter 57.1 45 0.0015 25.7 7.5 48 33-80 14-61 (120)
67 3u59_A Tropomyosin beta chain; 56.0 57 0.002 23.9 10.6 54 4-57 7-60 (101)
68 3htk_A Structural maintenance 55.0 42 0.0014 22.0 6.4 40 16-55 8-47 (60)
69 3m9b_A Proteasome-associated A 54.8 8.1 0.00028 33.7 3.2 12 190-201 215-226 (251)
70 4dnd_A Syntaxin-10, SYN10; str 53.5 43 0.0015 26.0 7.0 57 20-76 27-91 (130)
71 2oto_A M protein; helical coil 52.8 81 0.0028 24.7 10.7 26 39-64 69-94 (155)
72 2efr_A General control protein 52.6 89 0.003 25.1 11.6 31 45-75 102-132 (155)
73 1l8d_A DNA double-strand break 51.9 66 0.0023 23.4 10.0 24 60-83 79-102 (112)
74 1i84_S Smooth muscle myosin he 51.7 49 0.0017 34.1 8.9 8 65-72 926-933 (1184)
75 1zxa_A CGMP-dependent protein 51.4 9.8 0.00034 26.8 2.6 42 3-44 15-56 (67)
76 2yy0_A C-MYC-binding protein; 51.1 31 0.0011 22.9 4.9 29 27-55 19-47 (53)
77 3tnu_B Keratin, type II cytosk 50.8 80 0.0027 24.0 8.8 21 13-33 36-56 (129)
78 3mov_A Lamin-B1; LMNB1, B-type 50.3 48 0.0016 24.4 6.4 48 31-82 41-88 (95)
79 2eqb_B RAB guanine nucleotide 50.3 58 0.002 24.4 6.8 9 46-54 24-32 (97)
80 2lw1_A ABC transporter ATP-bin 49.8 66 0.0022 22.9 7.0 55 4-58 20-80 (89)
81 2b9c_A Striated-muscle alpha t 49.7 20 0.00068 28.6 4.5 9 68-76 103-111 (147)
82 2ocy_A RAB guanine nucleotide 49.6 1E+02 0.0034 24.8 11.3 46 40-85 78-134 (154)
83 3tnu_A Keratin, type I cytoske 49.3 86 0.0029 23.9 10.5 44 38-81 81-127 (131)
84 3mtu_E Head morphogenesis prot 49.2 55 0.0019 23.5 6.3 45 13-57 30-74 (77)
85 3u06_A Protein claret segregat 49.1 47 0.0016 30.5 7.6 35 23-57 6-40 (412)
86 2lf0_A Uncharacterized protein 48.9 21 0.0007 27.9 4.3 48 24-71 7-55 (123)
87 2efl_A Formin-binding protein 48.3 46 0.0016 27.8 6.9 46 12-57 115-160 (305)
88 2zqm_A Prefoldin beta subunit 47.6 78 0.0027 23.0 8.1 28 18-45 11-38 (117)
89 2x3v_A Syndapin I, protein kin 47.5 1.3E+02 0.0046 25.6 11.3 21 36-56 185-205 (337)
90 1xaw_A Occludin; coiled-coil, 47.4 79 0.0027 25.1 7.6 40 20-59 59-101 (140)
91 1m1j_B Fibrinogen beta chain; 47.3 1.8E+02 0.0062 27.3 11.3 17 8-24 102-118 (464)
92 1gk4_A Vimentin; intermediate 46.7 75 0.0026 22.5 7.0 69 8-83 10-78 (84)
93 3rrk_A V-type ATPase 116 kDa s 46.3 32 0.0011 30.1 5.8 76 24-99 223-306 (357)
94 3hhm_B NISH2 P85alpha; PI3KCA, 46.1 1.4E+02 0.0048 27.0 10.2 36 2-37 129-164 (373)
95 3ghg_A Fibrinogen alpha chain; 46.1 53 0.0018 31.6 7.5 22 62-83 134-155 (562)
96 3vkg_A Dynein heavy chain, cyt 46.0 83 0.0029 36.5 10.1 12 180-191 2218-2229(3245)
97 3a7p_A Autophagy protein 16; c 45.8 1.2E+02 0.004 24.5 8.4 55 21-75 69-126 (152)
98 3mud_A DNA repair protein XRCC 45.7 99 0.0034 25.4 8.2 47 30-76 124-170 (175)
99 2efl_A Formin-binding protein 45.0 1.3E+02 0.0045 24.9 9.6 31 4-34 128-158 (305)
100 1u2m_A Histone-like protein HL 44.9 4.4 0.00015 31.3 -0.1 32 13-44 23-54 (143)
101 3u06_A Protein claret segregat 44.8 45 0.0016 30.6 6.7 52 30-84 6-57 (412)
102 3o0z_A RHO-associated protein 44.7 1.3E+02 0.0044 24.6 10.1 29 2-30 51-79 (168)
103 1m1j_A Fibrinogen alpha subuni 44.3 2.1E+02 0.0072 27.0 12.6 75 12-86 71-145 (491)
104 2w6a_A ARF GTPase-activating p 44.3 62 0.0021 22.3 5.6 38 3-40 17-54 (63)
105 4dci_A Uncharacterized protein 42.0 1.3E+02 0.0045 24.0 9.3 63 17-79 33-104 (150)
106 2oqq_A Transcription factor HY 41.0 31 0.0011 22.1 3.4 33 4-36 8-40 (42)
107 3efg_A Protein SLYX homolog; x 40.8 52 0.0018 23.4 5.1 51 4-54 12-62 (78)
108 4h22_A Leucine-rich repeat fli 40.8 71 0.0024 24.2 6.1 55 21-79 24-78 (103)
109 1ci6_A Transcription factor AT 40.3 51 0.0017 22.3 4.8 25 58-82 36-60 (63)
110 1ses_A Seryl-tRNA synthetase; 40.3 99 0.0034 28.2 8.3 23 63-85 82-104 (421)
111 3aco_A Pacsin2, protein kinase 40.2 1E+02 0.0035 26.7 8.1 29 34-62 192-220 (350)
112 2pih_A Protein YMCA; regulate 39.7 56 0.0019 25.7 5.7 63 33-96 39-103 (151)
113 2c0s_A Conserved domain protei 38.6 75 0.0026 21.8 5.5 46 2-47 4-49 (64)
114 4emc_A Monopolin complex subun 38.5 1.7E+02 0.0059 24.3 8.9 76 22-107 22-97 (190)
115 3efg_A Protein SLYX homolog; x 38.5 26 0.00088 25.0 3.2 44 4-47 19-62 (78)
116 2efk_A CDC42-interacting prote 38.4 1.1E+02 0.0037 25.5 7.8 48 10-57 106-153 (301)
117 3mov_A Lamin-B1; LMNB1, B-type 37.7 26 0.0009 25.9 3.2 32 44-75 22-53 (95)
118 1lwu_C Fibrinogen gamma chain; 37.4 68 0.0023 28.7 6.5 35 18-52 3-37 (323)
119 3qh9_A Liprin-beta-2; coiled-c 37.2 80 0.0027 22.9 5.6 32 24-55 23-61 (81)
120 1lwu_C Fibrinogen gamma chain; 36.9 53 0.0018 29.4 5.7 12 126-137 124-135 (323)
121 2e50_A Protein SET; histone ch 36.9 1.1E+02 0.0036 25.8 7.4 44 32-75 24-67 (225)
122 4etp_A Kinesin-like protein KA 36.9 64 0.0022 29.4 6.4 36 29-64 5-40 (403)
123 1wle_A Seryl-tRNA synthetase; 36.7 1.1E+02 0.0038 28.8 8.1 26 61-86 132-157 (501)
124 3swk_A Vimentin; cytoskeleton, 36.4 1.2E+02 0.004 21.8 7.7 55 24-78 4-61 (86)
125 1go4_E MAD1 (mitotic arrest de 36.2 67 0.0023 24.1 5.3 33 20-52 12-44 (100)
126 1gk4_A Vimentin; intermediate 35.9 1.1E+02 0.0039 21.5 11.2 34 42-75 9-42 (84)
127 2f23_A Anti-cleavage anti-GREA 35.8 55 0.0019 25.7 5.1 57 20-77 10-71 (156)
128 1wle_A Seryl-tRNA synthetase; 35.8 1E+02 0.0035 29.0 7.8 34 14-47 71-104 (501)
129 4e61_A Protein BIM1; EB1-like 35.7 1.4E+02 0.0048 22.6 7.1 31 24-54 8-38 (106)
130 2v66_B Nuclear distribution pr 35.6 1.4E+02 0.005 22.6 8.9 23 17-39 7-29 (111)
131 1ci6_A Transcription factor AT 35.6 1E+02 0.0034 20.8 8.0 25 26-50 29-53 (63)
132 3w03_C DNA repair protein XRCC 35.3 1.1E+02 0.0037 25.3 6.9 45 29-73 140-184 (184)
133 2v4h_A NF-kappa-B essential mo 34.8 1.5E+02 0.0052 22.6 8.2 49 30-79 27-75 (110)
134 1fzc_C Fibrin; blood coagulati 33.9 55 0.0019 29.3 5.3 42 13-54 4-45 (319)
135 3s4r_A Vimentin; alpha-helix, 33.9 1.3E+02 0.0046 21.7 10.9 72 13-84 9-81 (93)
136 1x8y_A Lamin A/C; structural p 33.6 47 0.0016 23.8 4.0 9 19-27 9-17 (86)
137 3abh_A Pacsin2, protein kinase 33.3 98 0.0034 26.2 6.7 37 18-54 141-177 (312)
138 2zqm_A Prefoldin beta subunit 32.4 81 0.0028 22.9 5.3 27 31-57 74-100 (117)
139 1gmj_A ATPase inhibitor; coile 32.3 1.4E+02 0.005 21.6 6.8 18 57-74 56-73 (84)
140 3ra3_B P2F; coiled coil domain 32.1 48 0.0016 19.0 3.0 22 36-57 2-23 (28)
141 1dkg_A Nucleotide exchange fac 31.2 1.3E+02 0.0045 24.8 6.9 43 23-65 38-84 (197)
142 3kin_B Kinesin heavy chain; mo 30.9 80 0.0027 23.8 5.1 30 32-61 87-116 (117)
143 2xnx_M M protein, M1-BC1; cell 30.9 2E+02 0.007 22.9 7.8 39 21-59 67-105 (146)
144 1x79_B RAB GTPase binding effe 30.8 1.8E+02 0.0061 22.2 8.9 66 20-85 6-71 (112)
145 1gk6_A Vimentin; intermediate 30.8 1.2E+02 0.0041 20.2 7.2 45 35-83 8-52 (59)
146 1g6u_A Domain swapped dimer; d 30.4 51 0.0017 21.1 3.2 24 24-47 24-47 (48)
147 2ve7_A Kinetochore protein HEC 29.6 33 0.0011 30.3 3.1 10 70-79 221-230 (315)
148 2xdj_A Uncharacterized protein 29.5 1.6E+02 0.0053 21.1 7.1 22 34-55 20-41 (83)
149 2d4y_A HAP1, flagellar HOOK-as 29.5 2.3E+02 0.0078 25.7 8.9 50 27-76 71-120 (463)
150 1t3j_A Mitofusin 1; coiled coi 29.5 1.3E+02 0.0046 22.3 5.9 25 33-57 70-94 (96)
151 1fxk_C Protein (prefoldin); ar 29.2 1.1E+02 0.0039 22.8 5.8 33 25-57 86-118 (133)
152 2e7s_A RAB guanine nucleotide 29.0 54 0.0019 25.9 3.9 80 6-85 18-122 (135)
153 3hh0_A Transcriptional regulat 29.0 67 0.0023 24.9 4.5 54 53-106 81-139 (146)
154 2yy0_A C-MYC-binding protein; 28.4 58 0.002 21.5 3.4 7 47-53 25-31 (53)
155 2p2u_A HOST-nuclease inhibitor 28.2 2.3E+02 0.0078 22.6 8.9 60 21-81 11-74 (171)
156 2ve7_A Kinetochore protein HEC 28.2 84 0.0029 27.6 5.5 6 22-27 165-170 (315)
157 3qne_A Seryl-tRNA synthetase, 28.1 1.8E+02 0.0061 27.4 8.0 32 14-45 34-65 (485)
158 3o0z_A RHO-associated protein 27.8 2.5E+02 0.0084 22.9 10.6 47 15-61 92-138 (168)
159 2fic_A Bridging integrator 1; 27.4 2.5E+02 0.0086 22.8 8.6 24 45-68 183-206 (251)
160 2xus_A Breast cancer metastasi 27.2 54 0.0019 21.6 3.0 15 14-28 14-28 (49)
161 3he4_B Synzip5; heterodimeric 27.2 1.1E+02 0.0036 19.4 4.2 26 26-51 12-37 (46)
162 3tul_A Cell invasion protein S 27.1 99 0.0034 25.0 5.1 50 7-56 35-84 (158)
163 3twe_A Alpha4H; unknown functi 26.8 93 0.0032 17.7 3.8 14 60-73 9-22 (27)
164 3cve_A Homer protein homolog 1 26.7 1.7E+02 0.0058 20.6 8.8 28 4-31 5-32 (72)
165 1jcd_A Major outer membrane li 26.3 1.4E+02 0.0049 19.7 5.1 29 28-56 12-40 (52)
166 1fxk_A Prefoldin; archaeal pro 26.3 1.8E+02 0.006 20.7 8.1 26 18-43 6-31 (107)
167 2pjw_H Uncharacterized protein 25.7 1.9E+02 0.0066 21.0 7.4 47 37-83 38-84 (88)
168 2xdj_A Uncharacterized protein 25.5 1.9E+02 0.0064 20.7 8.4 16 16-31 23-38 (83)
169 4ani_A Protein GRPE; chaperone 25.2 2E+02 0.0068 24.1 7.0 61 36-96 61-127 (213)
170 2jo8_A Serine/threonine-protei 25.0 1E+02 0.0035 20.4 4.1 25 45-69 25-49 (51)
171 2ve7_C Kinetochore protein NUF 24.9 34 0.0012 29.3 2.2 35 22-56 143-177 (250)
172 2dq0_A Seryl-tRNA synthetase; 24.9 2E+02 0.0069 26.5 7.6 27 60-86 84-110 (455)
173 3ilw_A DNA gyrase subunit A; D 24.0 39 0.0013 32.0 2.5 40 18-57 421-460 (470)
174 1m1j_A Fibrinogen alpha subuni 23.9 2.3E+02 0.0078 26.8 7.7 39 17-55 115-153 (491)
175 2dq0_A Seryl-tRNA synthetase; 23.7 3.5E+02 0.012 24.9 9.0 52 27-78 31-88 (455)
176 1zvu_A Topoisomerase IV subuni 23.6 38 0.0013 33.6 2.5 46 16-61 405-450 (716)
177 3qne_A Seryl-tRNA synthetase, 23.6 2.9E+02 0.01 25.9 8.5 31 8-38 35-65 (485)
178 2nps_D Syntaxin-6; vesicle fus 23.4 1.3E+02 0.0044 21.0 4.8 16 10-25 16-31 (82)
179 2bzb_A Conserved domain protei 23.2 1.3E+02 0.0043 20.5 4.5 45 2-46 4-48 (62)
180 1fxk_A Prefoldin; archaeal pro 23.1 1E+02 0.0034 22.0 4.3 24 33-56 71-94 (107)
181 3m9b_A Proteasome-associated A 23.0 62 0.0021 28.1 3.5 35 22-56 56-90 (251)
182 2zdi_C Prefoldin subunit alpha 22.7 1.3E+02 0.0044 23.2 5.1 34 25-58 96-129 (151)
183 2jee_A YIIU; FTSZ, septum, coi 22.7 2.2E+02 0.0075 20.5 8.6 20 60-79 49-68 (81)
184 4dyl_A Tyrosine-protein kinase 22.7 2.7E+02 0.0094 24.8 8.0 74 1-74 121-219 (406)
185 1s1c_X RHO-associated, coiled- 22.5 2.1E+02 0.0071 20.1 8.8 25 23-47 9-33 (71)
186 3iox_A AGI/II, PA; alpha helix 22.3 3.3E+02 0.011 25.8 8.6 32 5-36 15-46 (497)
187 4b6x_A AVRRPS4, avirulence pro 22.3 2.3E+02 0.0079 20.6 8.0 41 24-64 26-71 (90)
188 3uul_A Utrophin; spectrin repe 22.2 2E+02 0.007 20.0 6.1 19 20-38 43-61 (118)
189 3i2w_A Syndapin, LD46328P; EFC 22.1 1.5E+02 0.0051 24.7 5.8 38 37-74 187-224 (290)
190 3a6m_A Protein GRPE, HSP-70 co 22.1 9.1 0.00031 31.4 -1.9 47 20-66 19-65 (177)
191 4dzo_A Mitotic spindle assembl 22.0 1.3E+02 0.0046 22.9 4.9 19 52-70 22-40 (123)
192 3trt_A Vimentin; cytoskeleton, 22.0 1.9E+02 0.0066 19.6 6.7 14 43-56 51-64 (77)
193 3lpx_A GYRA, DNA gyrase, A sub 21.7 45 0.0016 31.7 2.5 47 15-61 441-487 (500)
194 2ocy_A RAB guanine nucleotide 21.7 3.1E+02 0.011 21.9 9.5 33 4-36 63-95 (154)
195 3fs3_A Nucleosome assembly pro 21.1 2.4E+02 0.0084 25.5 7.2 36 40-75 55-90 (359)
196 1j1d_B Troponin T, TNT; THIN f 21.0 2.4E+02 0.0082 21.1 6.1 28 31-58 46-73 (106)
197 2ket_A Cathelicidin-6; antimic 21.0 58 0.002 18.5 1.9 12 32-43 6-17 (27)
198 2inr_A DNA topoisomerase 4 sub 20.9 48 0.0016 31.6 2.5 6 17-22 428-433 (514)
199 3m91_A Proteasome-associated A 20.7 1.9E+02 0.0064 19.0 5.2 37 17-53 13-49 (51)
200 2ayu_A Nucleosome assembly pro 20.5 2E+02 0.0068 26.6 6.5 67 18-84 70-141 (417)
201 3tul_A Cell invasion protein S 20.4 2.8E+02 0.0094 22.3 6.5 66 8-73 54-125 (158)
202 3cvf_A Homer-3, homer protein 20.4 2.4E+02 0.0082 20.1 8.2 25 39-63 25-49 (79)
203 3l4f_A RHO guanine nucleotide 20.3 2.2E+02 0.0074 19.5 7.0 17 58-74 34-50 (61)
204 4e61_A Protein BIM1; EB1-like 20.3 2.8E+02 0.0097 20.9 8.5 49 4-52 9-57 (106)
205 1lwu_B Fibrinogen beta chain; 20.2 1.3E+02 0.0043 26.9 5.0 17 121-137 120-136 (323)
206 1ses_A Seryl-tRNA synthetase; 20.2 2.5E+02 0.0084 25.6 7.1 52 27-78 28-83 (421)
207 3d5a_X RF1, peptide chain rele 20.0 4.9E+02 0.017 23.5 10.9 16 6-21 3-18 (354)
No 1
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=93.37 E-value=1.7 Score=33.73 Aligned_cols=72 Identities=10% Similarity=0.287 Sum_probs=61.6
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
++++.+|.+..+++.+++.. +++-.+.-.+++-.|...++..++.+.+|+..|..=+.+..+.+..|+..-+
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~---w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re 87 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDF---IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSRE 87 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888887 7777777788889999999999999999999999999999888888876543
No 2
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=93.37 E-value=0.97 Score=35.40 Aligned_cols=64 Identities=17% Similarity=0.332 Sum_probs=49.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1302 22 YSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM---------DEFNRDRRDLEQSQDELLKDLKLRKLIIENF 85 (225)
Q Consensus 22 yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq---------~E~~~ERedll~tir~l~relkLk~lIId~F 85 (225)
|+...+.++.-.+.|.+....+.++..-+..+. .+|..=--.+-+-...|.++++=+..||+||
T Consensus 29 ynqeka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk~~~~~Ld~eI~~qe~iI~nF 101 (119)
T 2avr_X 29 FNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777778888877666666665555554 5666666677788889999999999999999
No 3
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=92.74 E-value=0.86 Score=35.68 Aligned_cols=66 Identities=17% Similarity=0.326 Sum_probs=56.4
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1302 20 GNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM---------DEFNRDRRDLEQSQDELLKDLKLRKLIIENF 85 (225)
Q Consensus 20 ~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq---------~E~~~ERedll~tir~l~relkLk~lIId~F 85 (225)
..|+-.+++.+.-.++|-+....+.++..-+..++ .+|..--..|.....+|+.+++=...|||+|
T Consensus 27 qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~keLd~~ik~qekiIdnF 101 (119)
T 3etw_A 27 ARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888888777777777777665 6788888999999999999999999999999
No 4
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=92.69 E-value=1.9 Score=33.21 Aligned_cols=82 Identities=20% Similarity=0.332 Sum_probs=68.6
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEF---NRDRRDLEQSQDELLKDLKLR 78 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~---~~ERedll~tir~l~relkLk 78 (225)
..+++++....-+...++-...+++..++.-+.|...-..+-+.+..+|..+...- .--|-||+..+..|.-||.+.
T Consensus 23 ~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 23 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888889999999999999999988888899999988776543 346889999999999999987
Q ss_pred HHHHH
Q psy1302 79 KLIIE 83 (225)
Q Consensus 79 ~lIId 83 (225)
..+-+
T Consensus 103 Kk~he 107 (119)
T 3ol1_A 103 KKLHE 107 (119)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76643
No 5
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=90.77 E-value=3 Score=29.89 Aligned_cols=72 Identities=14% Similarity=0.259 Sum_probs=51.6
Q ss_pred ChHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 1 MIEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELL 72 (225)
Q Consensus 1 ~~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~ 72 (225)
|..++.+|..-..+.....+.+..++..+....++..++-..+.+++.-|.-++.++.+=-+.|.+....|.
T Consensus 1 m~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777777777777777777777777777777776666666666665554
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.21 E-value=1.8 Score=44.66 Aligned_cols=65 Identities=15% Similarity=0.165 Sum_probs=44.3
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 19 RGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIE 83 (225)
Q Consensus 19 e~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId 83 (225)
+....+++.+|..+++++.++...++.+..|.+++++.++.-.++|.+.+..|.++......=++
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~ 1040 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKE 1040 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666666666777777777777777777777778888888888888765555443
No 7
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=89.80 E-value=4.5 Score=29.50 Aligned_cols=79 Identities=20% Similarity=0.336 Sum_probs=67.9
Q ss_pred ChHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q psy1302 1 MIEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMD---EFNRDRRDLEQSQDELLKDLKL 77 (225)
Q Consensus 1 ~~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~---E~~~ERedll~tir~l~relkL 77 (225)
|++|++++...--+...++-.-.+++..++.-+.|...-..+-+++..+|.-+.. +-.--|-||+..+..|..||.+
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f 81 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 81 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999888888888889999999999999999888888888888887763 5556889999999999999887
Q ss_pred HH
Q psy1302 78 RK 79 (225)
Q Consensus 78 k~ 79 (225)
..
T Consensus 82 Lk 83 (86)
T 3swk_A 82 LK 83 (86)
T ss_dssp HT
T ss_pred Hh
Confidence 53
No 8
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=89.52 E-value=1.1 Score=35.60 Aligned_cols=40 Identities=8% Similarity=0.111 Sum_probs=22.1
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1302 15 TEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM 54 (225)
Q Consensus 15 ~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq 54 (225)
...+.+.|..|.++++.+.+.+..|...+.+++.++..+.
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~ 109 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSA 109 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666655555555555555555554444
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=88.94 E-value=6.6 Score=32.90 Aligned_cols=79 Identities=13% Similarity=0.231 Sum_probs=46.2
Q ss_pred HHHHHHHhHhhHHHHHhhcCCH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTL----EQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRK 79 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssL----QeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~ 79 (225)
+++++..-+.+..+..+.-..| ..+++...++++.|..++..++.|+......|..-..+...+|..|.+++.-..
T Consensus 22 ~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~ 101 (189)
T 2v71_A 22 YKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTR 101 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333 334556667777777777777777777776666666666666666666655444
Q ss_pred HHH
Q psy1302 80 LII 82 (225)
Q Consensus 80 lII 82 (225)
.+.
T Consensus 102 ~~~ 104 (189)
T 2v71_A 102 AIK 104 (189)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=88.09 E-value=3.7 Score=35.12 Aligned_cols=89 Identities=13% Similarity=0.233 Sum_probs=46.7
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIE 83 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId 83 (225)
|..+++..+.....+++.-..+-++++.+...+..+...+..++.++...+.++.....++...+..+..+ ..-+.
T Consensus 95 L~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~----r~~l~ 170 (256)
T 3na7_A 95 LNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKK----KEDLV 170 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 44555555555555555555555555555555555555555555555555555555554444444444322 22345
Q ss_pred hcCChHH---HHHHHH
Q psy1302 84 NFIPIEE---LKRLEQ 96 (225)
Q Consensus 84 ~FIP~ee---~~kI~~ 96 (225)
.-||++- .++|.+
T Consensus 171 ~~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 171 EKTEPKIYSFYERIRR 186 (256)
T ss_dssp HTSCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHH
Confidence 5678864 455554
No 11
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.03 E-value=3.3 Score=32.80 Aligned_cols=7 Identities=14% Similarity=0.212 Sum_probs=2.5
Q ss_pred HHHHHHh
Q psy1302 43 YEEVKQD 49 (225)
Q Consensus 43 l~~~k~E 49 (225)
+.+++.+
T Consensus 105 ~e~~~~e 111 (138)
T 3hnw_A 105 AESSAKE 111 (138)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 12
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=87.14 E-value=7.7 Score=28.93 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=28.0
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 20 GNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM---DEFNRDRRDLEQSQDELLKDLKLR 78 (225)
Q Consensus 20 ~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq---~E~~~ERedll~tir~l~relkLk 78 (225)
....-+.+||...++|+.-+-..+..++..+.+.+ .+-..-+.+.+..+-.|+|.+.|.
T Consensus 37 ~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 37 ERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444443333333 222333445555777777777764
No 13
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=86.14 E-value=8.6 Score=28.50 Aligned_cols=60 Identities=20% Similarity=0.300 Sum_probs=30.9
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 19 RGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM---DEFNRDRRDLEQSQDELLKDLKLR 78 (225)
Q Consensus 19 e~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq---~E~~~ERedll~tir~l~relkLk 78 (225)
+....-+.+||...++|++-+...+..+...+.+.+ ++...-+.+-+..+..|+|.|.|.
T Consensus 36 e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 36 EDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444545555444444444444444444 223334555666777888877764
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=84.56 E-value=6 Score=40.88 Aligned_cols=47 Identities=15% Similarity=0.231 Sum_probs=22.5
Q ss_pred HhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1302 12 EESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN 58 (225)
Q Consensus 12 Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~ 58 (225)
+.+...++.+-.+|++|++...+.+.++...++.++..+..++++-+
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~ 1022 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555544444444444444444333
No 15
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=83.66 E-value=8.2 Score=27.93 Aligned_cols=63 Identities=14% Similarity=0.210 Sum_probs=48.1
Q ss_pred hHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 14 STEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 14 e~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
...++-.+..+-.=+-...|.-|..|...|-.+..+|.||.++...+++......+.|.+-+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL~ 72 (77)
T 3mtu_E 10 EHEDILNKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQTLL 72 (77)
T ss_dssp HHHHHHHHTTCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344555555554444556788899999999999999999999999999999999988876554
No 16
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.60 E-value=5.1 Score=34.21 Aligned_cols=35 Identities=11% Similarity=0.206 Sum_probs=19.7
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1302 20 GNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM 54 (225)
Q Consensus 20 ~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq 54 (225)
+.|+.|+.|++...+++..+-..+..+..++..++
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~ 124 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKS 124 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777776666666555555554444443333
No 17
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=82.86 E-value=4.7 Score=26.82 Aligned_cols=50 Identities=16% Similarity=0.308 Sum_probs=33.1
Q ss_pred HHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1302 7 ELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDE 56 (225)
Q Consensus 7 ele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E 56 (225)
++...+....+..++|+.+..+.+.-+.+++++...+..+..+|..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566666777777777777777777777777777777766543
No 18
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=82.73 E-value=7.2 Score=28.43 Aligned_cols=47 Identities=9% Similarity=0.230 Sum_probs=34.3
Q ss_pred HhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1302 10 KKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDE 56 (225)
Q Consensus 10 ~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E 56 (225)
..++++..+++.+..+++.++.-.+..+.|-.++..+.+|..||+..
T Consensus 11 ~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 11 RQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777777788888888888888766
No 19
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=81.33 E-value=13 Score=26.96 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=16.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 47 KQDIQDIMDEFNRDRRDLEQSQDELLKD 74 (225)
Q Consensus 47 k~Ei~Dlq~E~~~ERedll~tir~l~re 74 (225)
-+++.+........+.+|...+.+++-.
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~r 85 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKKL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666666543
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.23 E-value=11 Score=35.05 Aligned_cols=50 Identities=8% Similarity=0.057 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy1302 26 EQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN---RDRRDLEQSQDELLKDL 75 (225)
Q Consensus 26 QeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~---~ERedll~tir~l~rel 75 (225)
.+++.....+..++-.+++..++++++.+++++ .+++.++..+++..+.+
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 508 NKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHH
Confidence 333333344444555555556666655555555 45555544444443333
No 21
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=81.17 E-value=16 Score=28.09 Aligned_cols=72 Identities=17% Similarity=0.265 Sum_probs=43.4
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRD---LEQSQDELLKDLKLR 78 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERed---ll~tir~l~relkLk 78 (225)
.|..+|...|+........+..|++|+..+.+-+ ..+.-+++.+.=-...|..||.+ +-+.+.+|..+|...
T Consensus 28 ~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l----E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~L 102 (110)
T 2v4h_A 28 DLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL 102 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHH
Confidence 4667777777777777777777777666644433 34555666666666677766543 445555555555433
No 22
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=80.52 E-value=18 Score=28.10 Aligned_cols=69 Identities=17% Similarity=0.280 Sum_probs=43.6
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSK----YEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~k----l~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
|+++|-...+...+.+....+--+-|.....-|++..+. ++.++.||.+|... -++.+..+..|.++..
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~----Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHK----LQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhch
Confidence 567777777777777766666666666666666655544 66667777776653 3355555556666654
No 23
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=79.75 E-value=19 Score=27.73 Aligned_cols=54 Identities=11% Similarity=0.310 Sum_probs=30.2
Q ss_pred HhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy1302 12 EESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLE 65 (225)
Q Consensus 12 Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll 65 (225)
++++..+.+.+..|.+.+..-.+..+.|-.++..+.+|..||+..-+.++.-+.
T Consensus 12 e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~ 65 (129)
T 2fxo_A 12 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLA 65 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555666666666666666666665554443
No 24
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.79 E-value=12 Score=28.93 Aligned_cols=34 Identities=3% Similarity=0.154 Sum_probs=20.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 42 KYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDL 75 (225)
Q Consensus 42 kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~rel 75 (225)
.-.++..-|.|+...|..+..++...|..|..+|
T Consensus 60 ~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL 93 (131)
T 3tnu_A 60 MKASLENSLEETKGRYCMQLAQIQEMIGSVEEQL 93 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666666666666666666555
No 25
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=78.31 E-value=14 Score=30.33 Aligned_cols=47 Identities=15% Similarity=0.311 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy1302 23 STLEQEVQAKNKKLQKIY-------SKYEEVKQDIQDIMDEFNRDRRDLEQSQD 69 (225)
Q Consensus 23 ssLQeEve~KtkkLkKl~-------~kl~~~k~Ei~Dlq~E~~~ERedll~tir 69 (225)
..|.+++..+...|..|. ++++++-.||.+++.+...+|-++...++
T Consensus 88 ~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~ 141 (175)
T 3lay_A 88 SALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMA 141 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777776 47888888888888888887777665554
No 26
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=77.78 E-value=8.2 Score=28.20 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy1302 24 TLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLE 65 (225)
Q Consensus 24 sLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll 65 (225)
++++|+...+.-+.-+..+|+.++....+|.+|+.+=++.|.
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555444444444445555555555555555444444433
No 27
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=77.10 E-value=6.6 Score=32.94 Aligned_cols=54 Identities=9% Similarity=0.305 Sum_probs=24.4
Q ss_pred HHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1302 5 KQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN 58 (225)
Q Consensus 5 ~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~ 58 (225)
+++|+..+.-...+...-.-|-++++.+...++.|..++.+++..+...+....
T Consensus 12 q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 12 KQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 444444444444444444445555555555566666666666665554444443
No 28
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=76.83 E-value=15 Score=27.43 Aligned_cols=59 Identities=14% Similarity=0.248 Sum_probs=41.8
Q ss_pred HHhhcCCHHHHHHHH--------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 18 IRGNYSTLEQEVQAK--------NKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 18 le~~yssLQeEve~K--------tkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
+...|.++..|+..- -.|+..--..++.++.-+-+|...|..=|+.+++.|+.|.+||.
T Consensus 19 ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe 85 (92)
T 3vp9_A 19 IRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLE 85 (92)
T ss_dssp TTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677766665332 22333344455666777788889999999999999999999984
No 29
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=76.41 E-value=18 Score=30.24 Aligned_cols=36 Identities=11% Similarity=0.097 Sum_probs=21.5
Q ss_pred hHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1302 14 STEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQD 49 (225)
Q Consensus 14 e~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~E 49 (225)
+...++.+.+.|+..+...+.-+..++.||++.+.|
T Consensus 50 eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 50 QLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666666666665
No 30
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=75.88 E-value=23 Score=32.65 Aligned_cols=32 Identities=9% Similarity=0.106 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1302 54 MDEFNRDRRDLEQSQDELLKDLKLRKLIIENF 85 (225)
Q Consensus 54 q~E~~~ERedll~tir~l~relkLk~lIId~F 85 (225)
-++-++....|..+|+.+-..|++++-+|++.
T Consensus 115 s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q 146 (390)
T 1deq_A 115 NEDLRSRIEILRRKVIEQVQRINLLQKNVRDQ 146 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33444444556666666666777777665544
No 31
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=74.76 E-value=8.2 Score=39.92 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=10.2
Q ss_pred hHHHHHhhcCCHHHHHHHHHHHHH
Q psy1302 14 STEEIRGNYSTLEQEVQAKNKKLQ 37 (225)
Q Consensus 14 e~~~le~~yssLQeEve~KtkkLk 37 (225)
...+++..+..|+++++.....+.
T Consensus 879 ~l~ele~~l~~Le~e~~~l~~~L~ 902 (1184)
T 1i84_S 879 ELKELEQKHTQLCEEKNLLQEKLQ 902 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333
No 32
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=73.33 E-value=4 Score=29.25 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q psy1302 64 LEQSQDELLKDL 75 (225)
Q Consensus 64 ll~tir~l~rel 75 (225)
..+.|++|..+|
T Consensus 52 kd~eI~~LqseL 63 (72)
T 3nmd_A 52 KDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444444
No 33
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=72.83 E-value=13 Score=28.24 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=33.7
Q ss_pred hhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy1302 13 ESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62 (225)
Q Consensus 13 ee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERe 62 (225)
.+-++++..|+.+++|-.-....-+..-.++.++..|+..|..|.++=+.
T Consensus 37 qEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 37 KEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888887776555555555566777777777777776665443
No 34
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=72.62 E-value=17 Score=26.48 Aligned_cols=52 Identities=21% Similarity=0.409 Sum_probs=37.4
Q ss_pred cCCHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 22 YSTLEQEVQAK---NKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKL 77 (225)
Q Consensus 22 yssLQeEve~K---tkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkL 77 (225)
=++|+.|+.+| ...|.+...-..+...++.|.. ..-++|+..++.+..++.-
T Consensus 16 QSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae----~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 16 QEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAE----ARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 36788898877 5677777777777777777544 4455777777777777665
No 35
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.56 E-value=15 Score=28.21 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=18.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 44 EEVKQDIQDIMDEFNRDRRDLEQSQDELLKDL 75 (225)
Q Consensus 44 ~~~k~Ei~Dlq~E~~~ERedll~tir~l~rel 75 (225)
.++..-|.|+...|..+..++...|..|..+|
T Consensus 60 ~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL 91 (129)
T 3tnu_B 60 ANLQNAIADAEQRGELALKDARNKLAELEEAL 91 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455566666666666666666666655554
No 36
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=72.28 E-value=27 Score=25.79 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=19.7
Q ss_pred HHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1302 6 QELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDI 50 (225)
Q Consensus 6 qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei 50 (225)
++|.+-+.+...+...-..++.|.......=.+.|..|...+.++
T Consensus 25 ~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql 69 (96)
T 3q8t_A 25 QELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQ 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444555544444443
No 37
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.12 E-value=29 Score=26.07 Aligned_cols=73 Identities=11% Similarity=0.298 Sum_probs=37.2
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----------HHHHHHHHHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDE-----------FNRDRRDLEQSQDELL 72 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E-----------~~~ERedll~tir~l~ 72 (225)
++.++..-+.+...++..+..|++++..-..+-...-.....+.+|+.||-.. =.++|..+..-.+.|.
T Consensus 10 lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~ 89 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLT 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555444444444556666666777766532 2344444455555554
Q ss_pred HHHH
Q psy1302 73 KDLK 76 (225)
Q Consensus 73 relk 76 (225)
.+|+
T Consensus 90 ~qL~ 93 (97)
T 2eqb_B 90 EQLR 93 (97)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 38
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=71.95 E-value=4.2 Score=31.02 Aligned_cols=38 Identities=11% Similarity=0.215 Sum_probs=16.5
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1302 17 EIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM 54 (225)
Q Consensus 17 ~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq 54 (225)
++++.+..++-|...|++.+..++.....++.++..++
T Consensus 41 e~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk 78 (103)
T 4h22_A 41 ELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVK 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433
No 39
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=71.35 E-value=9.5 Score=25.42 Aligned_cols=40 Identities=15% Similarity=0.315 Sum_probs=32.9
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1302 19 RGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN 58 (225)
Q Consensus 19 e~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~ 58 (225)
+..+..|+.++...+.+-.+|-.-|+.++.+|..|.++-.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445568888999999999999999999999998887754
No 40
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=70.05 E-value=44 Score=27.98 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=15.2
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQA 31 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~ 31 (225)
+++++.....+..-..++|..+-.|++.
T Consensus 121 ~~k~~~~~~~~l~KaKk~Y~~~~~e~e~ 148 (301)
T 2efk_A 121 AQQQLENGFKQLENSKRKFERDCREAEK 148 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555556666666555553
No 41
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=69.67 E-value=31 Score=25.50 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=13.5
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNK 34 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~Ktk 34 (225)
++.+|..-..+.......+..++..+.....
T Consensus 7 IKkKm~~lk~e~e~a~drae~~e~~~k~~e~ 37 (101)
T 3u1c_A 7 IKKKMQMLKLDKENALDRAEQAEADKKAAEE 37 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433333
No 42
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=69.41 E-value=24 Score=29.93 Aligned_cols=43 Identities=12% Similarity=0.256 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy1302 24 TLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQ 66 (225)
Q Consensus 24 sLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~ 66 (225)
.|.++++...+++..+..+|.-+.+|+.....-.++|++++..
T Consensus 63 ~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~ 105 (213)
T 4ani_A 63 AAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEK 105 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666776777777766666666665543
No 43
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=67.90 E-value=27 Score=32.27 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=36.6
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHH--------------HHHHHHHHHHHHHHHHhHHHHHH--------------
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAK--------------NKKLQKIYSKYEEVKQDIQDIMD-------------- 55 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~K--------------tkkLkKl~~kl~~~k~Ei~Dlq~-------------- 55 (225)
+++.+...........++|...-.|++.. .+.+.|+..+++.++.+..+...
T Consensus 141 ~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~ 220 (486)
T 3haj_A 141 AQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTP 220 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555556665554444333 13455666666665555555444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1302 56 EFNRDRRDLEQSQDELLKD 74 (225)
Q Consensus 56 E~~~ERedll~tir~l~re 74 (225)
+|..+...+++.+..++.+
T Consensus 221 ~y~~~~~~~~~~lQ~lEee 239 (486)
T 3haj_A 221 QYMENMEQVFEQCQQFEEK 239 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555433
No 44
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=67.55 E-value=30 Score=24.46 Aligned_cols=11 Identities=0% Similarity=0.353 Sum_probs=4.1
Q ss_pred HHHHhHHHHHH
Q psy1302 45 EVKQDIQDIMD 55 (225)
Q Consensus 45 ~~k~Ei~Dlq~ 55 (225)
.+..||..|+.
T Consensus 38 ~~E~ev~~L~k 48 (81)
T 1ic2_A 38 QLEDELVALQK 48 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 33333333333
No 45
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=66.74 E-value=33 Score=24.66 Aligned_cols=67 Identities=16% Similarity=0.308 Sum_probs=40.1
Q ss_pred HhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 10 KKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIE 83 (225)
Q Consensus 10 ~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId 83 (225)
..|....+++..|. -+++.....|..+-..+..+++++...-.|| ++|++.--.|..|+.-+.-+++
T Consensus 14 ~Le~~l~e~E~~~~---~~l~~~q~~i~~lE~el~~~r~e~~~ql~EY----q~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 14 AKEAKLRDLEDSLA---RERDTSRRLLAEKEREMAEMRARMQQQLDEY----QELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp THHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHc
Confidence 33444455555542 2344445555555555555555555444444 5788888889999888777665
No 46
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=66.72 E-value=20 Score=29.50 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q psy1302 31 AKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPI 88 (225)
Q Consensus 31 ~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~ 88 (225)
+|..-+.++..+|+.+..+..|...+| ..|.+.....+.|+.++...|+.|.-.
T Consensus 7 ~~~~~ve~v~~~L~e~h~qy~~ks~~y----d~l~e~y~r~sqEiq~Kr~AieAF~E~ 60 (170)
T 3l4q_C 7 VKEDSVEAVGAQLKVYHQQYQDKSREY----DQLYEEYTRTSQELQMKRTAIEAFNET 60 (170)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 455566777888888888888877777 456777778889999999999999754
No 47
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=66.58 E-value=19 Score=32.62 Aligned_cols=18 Identities=17% Similarity=0.475 Sum_probs=8.9
Q ss_pred HHHHHHHhHhhHHHHHhh
Q psy1302 4 MKQELDKKEESTEEIRGN 21 (225)
Q Consensus 4 l~qele~~Eee~~~le~~ 21 (225)
|||+|.+-+....+++.+
T Consensus 402 ~~~~~~~~~~~~~~~~~~ 419 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQ 419 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 455555555544444443
No 48
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=66.26 E-value=35 Score=24.78 Aligned_cols=53 Identities=13% Similarity=0.210 Sum_probs=33.6
Q ss_pred HhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy1302 10 KKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62 (225)
Q Consensus 10 ~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERe 62 (225)
+-|+....+-+++..||.|++....+--.|....+.+++....+..+.++=++
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~ 62 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444556667778888888887777777777777766555445544444333
No 49
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=65.05 E-value=15 Score=33.69 Aligned_cols=34 Identities=12% Similarity=0.317 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1302 25 LEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN 58 (225)
Q Consensus 25 LQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~ 58 (225)
|.+|++...++.+++...++.++.++.++.+.+.
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 41 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILI 41 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555444
No 50
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=65.05 E-value=4.9 Score=29.38 Aligned_cols=30 Identities=30% Similarity=0.478 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1302 27 QEVQAKNKKLQKIYSKYEEVKQDIQDIMDE 56 (225)
Q Consensus 27 eEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E 56 (225)
++++...++++||..+--+++.+++||-++
T Consensus 15 ~di~eLkkevkKL~~~A~q~kmdLHDLaEd 44 (81)
T 3csx_A 15 EAVADLKKKVRKLNSKAGQMKMDLHDLAEG 44 (81)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 567788999999999999999999999875
No 51
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=64.31 E-value=4.9 Score=28.68 Aligned_cols=30 Identities=20% Similarity=0.440 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1302 27 QEVQAKNKKLQKIYSKYEEVKQDIQDIMDE 56 (225)
Q Consensus 27 eEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E 56 (225)
++++...++++||..+--+++.++.||-++
T Consensus 3 edi~eLkkevkKL~~~A~q~kmdLHDLaEd 32 (71)
T 2js5_A 3 EGAEELKAKLKKLNAQATALKMDLHDLAED 32 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence 467788999999999999999999999864
No 52
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=63.46 E-value=37 Score=24.04 Aligned_cols=55 Identities=16% Similarity=0.279 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 25 LEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIE 83 (225)
Q Consensus 25 LQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId 83 (225)
|.-|.+.....|-.+...+..+++++.....|| ++|++.--.|+.|+.-+.-+++
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EY----q~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEY----QELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 556777777788888888888888887665555 5788888888888877766654
No 53
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=62.71 E-value=36 Score=24.11 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=35.7
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDE 56 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E 56 (225)
.+|..++.++.+|...+..-..||.-.+..-|.--|||....+.++.-+.||...
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~ 60 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKK 60 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Confidence 3566677777777766666666666666655666666666666666666666543
No 54
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=62.56 E-value=52 Score=30.36 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=15.6
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQ 37 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLk 37 (225)
|+.-|.+++ .++...+..|.++|+...+.-+
T Consensus 54 Lqg~Ldk~e---r~~~~rIe~L~~~L~~~s~s~~ 84 (390)
T 1deq_A 54 MKGLIDEVD---QDFTSRINKLRDSLFNYQKNSK 84 (390)
T ss_pred HHHHHHHhh---hhHHHHHHHHHHHHHHHHHhhh
Confidence 444444444 4455555555555555544433
No 55
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=62.44 E-value=26 Score=27.24 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy1302 24 TLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLE 65 (225)
Q Consensus 24 sLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll 65 (225)
||..|.....+++++|...++.++++++|...|-++-|.+..
T Consensus 61 SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 61 SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 444444444555666666666777777766666666555543
No 56
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=61.94 E-value=50 Score=25.07 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=27.4
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy1302 15 TEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLE 65 (225)
Q Consensus 15 ~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll 65 (225)
+..++..+..|...|+.-|=---.|..++++++.||.=+..-|+.|..+|.
T Consensus 64 r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq 114 (119)
T 3ol1_A 64 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQ 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433334566666666666666666665555543
No 57
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=61.40 E-value=42 Score=25.06 Aligned_cols=57 Identities=16% Similarity=0.268 Sum_probs=35.8
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRD 63 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERed 63 (225)
.|...|...|+.....+..++.|.+++..+...+ ..+.-+++.+.=-.+.|..||.+
T Consensus 6 ~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~----E~i~vLk~Qv~IY~~DF~aERad 62 (94)
T 3jsv_C 6 DLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAERHA 62 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677666666666666666666655554433 44555666666667778777654
No 58
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=61.38 E-value=25 Score=33.79 Aligned_cols=31 Identities=10% Similarity=0.135 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1302 56 EFNRDRRDLEQSQDELLKDLKLRKLIIENFI 86 (225)
Q Consensus 56 E~~~ERedll~tir~l~relkLk~lIId~FI 86 (225)
|-++..+.|.++|..+-..|++++-+|++..
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~ 144 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQL 144 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666677777766554
No 59
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=61.06 E-value=62 Score=28.36 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=38.4
Q ss_pred HHHHHHhHhhHHHHHhhcCCHHHHHHH--------------H--HHHHHH-------HHHHHHHHHHhHHHHHHHHHHHH
Q psy1302 5 KQELDKKEESTEEIRGNYSTLEQEVQA--------------K--NKKLQK-------IYSKYEEVKQDIQDIMDEFNRDR 61 (225)
Q Consensus 5 ~qele~~Eee~~~le~~yssLQeEve~--------------K--tkkLkK-------l~~kl~~~k~Ei~Dlq~E~~~ER 61 (225)
++++.+.+....-...+|.++.+|.+. + .|.++| +..|.+++.++..-.-.+.+..|
T Consensus 125 eKk~~dae~~l~KAK~~Y~~r~ee~ekak~~~~~~e~~q~~~~~~K~lek~r~~EEea~~K~eeAd~~Y~~~V~~a~~~r 204 (279)
T 3qwe_A 125 QKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEALYQACVREANARQ 204 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666667788888887751 1 244555 66677766666666666666666
Q ss_pred HHHHHH
Q psy1302 62 RDLEQS 67 (225)
Q Consensus 62 edll~t 67 (225)
.+|+.+
T Consensus 205 ~eL~~t 210 (279)
T 3qwe_A 205 QDLEIA 210 (279)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666555
No 60
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=60.93 E-value=53 Score=25.09 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=18.2
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNK 34 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQeEve~Ktk 34 (225)
.+...++..+..+.+++.++.+|-+|......
T Consensus 24 ~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~ 55 (129)
T 2fxo_A 24 RLKEALEKSEARRKELEEKMVSLLQEKNDLQL 55 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666666666666655544433
No 61
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=60.22 E-value=51 Score=25.20 Aligned_cols=7 Identities=14% Similarity=0.434 Sum_probs=2.6
Q ss_pred HHHHhhc
Q psy1302 16 EEIRGNY 22 (225)
Q Consensus 16 ~~le~~y 22 (225)
.....+|
T Consensus 20 e~~k~K~ 26 (111)
T 2v66_B 20 EALKEKL 26 (111)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 62
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=59.94 E-value=30 Score=39.93 Aligned_cols=8 Identities=13% Similarity=0.451 Sum_probs=4.1
Q ss_pred ccccCCCC
Q psy1302 106 QWNIVPET 113 (225)
Q Consensus 106 ~W~l~~~~ 113 (225)
.|++.++.
T Consensus 2161 ~W~~~GLP 2168 (3245)
T 3vkg_A 2161 NWHANSLP 2168 (3245)
T ss_dssp HHHHTTCC
T ss_pred HHHhCCCC
Confidence 45555543
No 63
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=59.64 E-value=68 Score=25.87 Aligned_cols=41 Identities=10% Similarity=0.114 Sum_probs=18.0
Q ss_pred HHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1302 9 DKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQD 49 (225)
Q Consensus 9 e~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~E 49 (225)
..-+.+...++.+...|.+|+..|++-+..+...+.+++.+
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq 111 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIE 111 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444443333
No 64
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=58.34 E-value=77 Score=26.09 Aligned_cols=41 Identities=12% Similarity=0.127 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 32 KNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELL 72 (225)
Q Consensus 32 KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~ 72 (225)
...|+.|....|...-...+..+.+|..+..++++....+.
T Consensus 168 ~~~k~~ka~~~Y~~~v~~~n~~~~~~~~~~~~~~~~lQ~le 208 (276)
T 2v0o_A 168 AAVKSKKATDTYKLYVEKYALAKADFEQKMTETAQKFQDIE 208 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555566666667777778777777777766554
No 65
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=57.46 E-value=1.2e+02 Score=28.53 Aligned_cols=10 Identities=10% Similarity=-0.067 Sum_probs=4.5
Q ss_pred CCCCChhHHH
Q psy1302 127 QLRRPTTLKA 136 (225)
Q Consensus 127 g~kRP~s~~a 136 (225)
...|.-.+|-
T Consensus 266 ~F~R~W~~Yk 275 (464)
T 1m1j_B 266 NFGRAWDEYK 275 (464)
T ss_dssp CCCCCHHHHH
T ss_pred ccccCHHHHH
Confidence 3344444443
No 66
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=57.14 E-value=45 Score=25.70 Aligned_cols=48 Identities=19% Similarity=0.319 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 33 NKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKL 80 (225)
Q Consensus 33 tkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~l 80 (225)
...|.-|+..+..++.|++-+..|.++...+|..-|.+|.-+|.-...
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~ 61 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQH 61 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666888888899999999999999999999999999999887653
No 67
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=56.03 E-value=57 Score=23.88 Aligned_cols=54 Identities=9% Similarity=0.207 Sum_probs=24.2
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEF 57 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~ 57 (225)
++.+|..-..+.......+..++..+.....+..++-..+.+++.-|.-++.++
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~el 60 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEV 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555555555544444444443333333333333333333
No 68
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=54.99 E-value=42 Score=21.98 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=20.5
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy1302 16 EEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMD 55 (225)
Q Consensus 16 ~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~ 55 (225)
..++..+.++.+++..++..+.++..+|.++..+++.+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~ 47 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRD 47 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555544443
No 69
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=54.84 E-value=8.1 Score=33.72 Aligned_cols=12 Identities=25% Similarity=0.318 Sum_probs=7.0
Q ss_pred ccccccccccch
Q psy1302 190 QDEADIDVDVKS 201 (225)
Q Consensus 190 ~~e~~~~~d~~~ 201 (225)
.-.|.+.+|...
T Consensus 215 r~GDsllvD~ra 226 (251)
T 3m9b_A 215 RPGDSLLVDTKA 226 (251)
T ss_dssp CTTCEEEECTTT
T ss_pred CCCCEEEEeCCC
Confidence 334666677654
No 70
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=53.51 E-value=43 Score=25.98 Aligned_cols=57 Identities=16% Similarity=0.310 Sum_probs=37.6
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 20 GNYSTLEQEVQAKNKKLQKIYSKYEEVK--------QDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 20 ~~yssLQeEve~KtkkLkKl~~kl~~~k--------~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
.=|-..++||...-.+++.++..+..+. .|+..+..|-...-+++..++.+|.+-+.
T Consensus 27 DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ 91 (130)
T 4dnd_A 27 DPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIG 91 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466678999999999999999887543 25555555555555555555555555554
No 71
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=52.82 E-value=81 Score=24.66 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy1302 39 IYSKYEEVKQDIQDIMDEFNRDRRDL 64 (225)
Q Consensus 39 l~~kl~~~k~Ei~Dlq~E~~~ERedl 64 (225)
|..+++.+..+..++.+....++..+
T Consensus 69 L~~~lke~~~~~~~l~ek~~~e~~~l 94 (155)
T 2oto_A 69 LETKLKELQQDYDLAKESTSWDRQRL 94 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334333333333333333333
No 72
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=52.60 E-value=89 Score=25.09 Aligned_cols=31 Identities=16% Similarity=0.302 Sum_probs=18.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 45 EVKQDIQDIMDEFNRDRRDLEQSQDELLKDL 75 (225)
Q Consensus 45 ~~k~Ei~Dlq~E~~~ERedll~tir~l~rel 75 (225)
.+..+|.++.++...+++.+.....+|..-+
T Consensus 102 kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl 132 (155)
T 2efr_A 102 KLEKSIDDLEDELYAQKLKYKAISEEMKQLE 132 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666555433
No 73
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=51.91 E-value=66 Score=23.39 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 60 DRRDLEQSQDELLKDLKLRKLIIE 83 (225)
Q Consensus 60 ERedll~tir~l~relkLk~lIId 83 (225)
+..++...+..+.++++-...-+.
T Consensus 79 ~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 79 TLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555554444443333
No 74
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=51.74 E-value=49 Score=34.14 Aligned_cols=8 Identities=25% Similarity=0.248 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy1302 65 EQSQDELL 72 (225)
Q Consensus 65 l~tir~l~ 72 (225)
...+.++.
T Consensus 926 e~~l~ele 933 (1184)
T 1i84_S 926 EEILHEME 933 (1184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 75
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=51.44 E-value=9.8 Score=26.78 Aligned_cols=42 Identities=31% Similarity=0.345 Sum_probs=20.7
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYE 44 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~ 44 (225)
+++..+..+++-.-+++.....-.+|+..++.+|.|+.+-+.
T Consensus 15 ~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 15 DFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445555555555555555555555555555555555554443
No 76
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=51.14 E-value=31 Score=22.88 Aligned_cols=29 Identities=17% Similarity=0.353 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy1302 27 QEVQAKNKKLQKIYSKYEEVKQDIQDIMD 55 (225)
Q Consensus 27 eEve~KtkkLkKl~~kl~~~k~Ei~Dlq~ 55 (225)
.+|++....+..|..++..++.++.++..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566555566666666666666665554
No 77
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=50.79 E-value=80 Score=24.00 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=10.6
Q ss_pred hhHHHHHhhcCCHHHHHHHHH
Q psy1302 13 ESTEEIRGNYSTLEQEVQAKN 33 (225)
Q Consensus 13 ee~~~le~~yssLQeEve~Kt 33 (225)
++..++....++|+-|++...
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~ 56 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVK 56 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555443
No 78
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=50.34 E-value=48 Score=24.44 Aligned_cols=48 Identities=10% Similarity=0.261 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 31 AKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLII 82 (225)
Q Consensus 31 ~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lII 82 (225)
.....|-.+...+..+++++...-.|| ++|++.--.|..|+.-+..++
T Consensus 41 ~~q~~i~~lE~eL~~~r~e~~~ql~EY----q~LlnvKl~Le~EIatYrkLL 88 (95)
T 3mov_A 41 NSRRMLTDKEREMAEIRDQMQQQLNDY----EQLLDVKLALDMEISAYRKLL 88 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444554444443333 356666666776666555444
No 79
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.27 E-value=58 Score=24.39 Aligned_cols=9 Identities=0% Similarity=0.280 Sum_probs=3.4
Q ss_pred HHHhHHHHH
Q psy1302 46 VKQDIQDIM 54 (225)
Q Consensus 46 ~k~Ei~Dlq 54 (225)
+..|+..|.
T Consensus 24 ~~~e~~~L~ 32 (97)
T 2eqb_B 24 RDDEVKRLR 32 (97)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 333333333
No 80
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=49.85 E-value=66 Score=22.94 Aligned_cols=55 Identities=15% Similarity=0.414 Sum_probs=36.0
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHH------HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQA------KNKKLQKIYSKYEEVKQDIQDIMDEFN 58 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~------KtkkLkKl~~kl~~~k~Ei~Dlq~E~~ 58 (225)
.+++|+.-+..+..++..-..|+.++.. =..++..+...+..++.++..+...+.
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666642 124666777777777777777776664
No 81
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=49.72 E-value=20 Score=28.57 Aligned_cols=9 Identities=44% Similarity=0.490 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q psy1302 68 QDELLKDLK 76 (225)
Q Consensus 68 ir~l~relk 76 (225)
|++|.-+|+
T Consensus 103 ~~eLEeeL~ 111 (147)
T 2b9c_A 103 CAELEEELK 111 (147)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 82
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.59 E-value=1e+02 Score=24.83 Aligned_cols=46 Identities=9% Similarity=0.369 Sum_probs=31.2
Q ss_pred HHHHHHHHHhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1302 40 YSKYEEVKQDIQDIMD-----------EFNRDRRDLEQSQDELLKDLKLRKLIIENF 85 (225)
Q Consensus 40 ~~kl~~~k~Ei~Dlq~-----------E~~~ERedll~tir~l~relkLk~lIId~F 85 (225)
-.....+.+|+.||-. .=.++|..+..-.+.|.++++=+..+|+..
T Consensus 78 E~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~l 134 (154)
T 2ocy_A 78 EEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTL 134 (154)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677777652 235667777777788888888777777764
No 83
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.26 E-value=86 Score=23.92 Aligned_cols=44 Identities=11% Similarity=0.216 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q psy1302 38 KIYSKYEEVKQDIQDIMDEFNR---DRRDLEQSQDELLKDLKLRKLI 81 (225)
Q Consensus 38 Kl~~kl~~~k~Ei~Dlq~E~~~---ERedll~tir~l~relkLk~lI 81 (225)
.+..++..+..++..+..+-++ |-++|++.--.|.-|+.-+.-+
T Consensus 81 ~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRkL 127 (131)
T 3tnu_A 81 QIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRL 127 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444443332 3345555555666666555443
No 84
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=49.21 E-value=55 Score=23.54 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=35.3
Q ss_pred hhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1302 13 ESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEF 57 (225)
Q Consensus 13 ee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~ 57 (225)
+-...+...|-|.+.+|+....+|...+.+++.+..++...-.++
T Consensus 30 ~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL~EL 74 (77)
T 3mtu_E 30 EALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQTLLEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 445567889999999999999999888888888888766554443
No 85
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=49.11 E-value=47 Score=30.46 Aligned_cols=35 Identities=11% Similarity=0.262 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1302 23 STLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEF 57 (225)
Q Consensus 23 ssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~ 57 (225)
.+|.+|+....++++++..++++++.|+..+.+++
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888887777777777777776554
No 86
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=48.94 E-value=21 Score=27.90 Aligned_cols=48 Identities=17% Similarity=0.319 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 24 TLEQEVQAKNKKLQKIYSKYEEVK-QDIQDIMDEFNRDRRDLEQSQDEL 71 (225)
Q Consensus 24 sLQeEve~KtkkLkKl~~kl~~~k-~Ei~Dlq~E~~~ERedll~tir~l 71 (225)
-+.+|+.....+|.++..|+.++. ..=.++-.+|..|.+.|...|..+
T Consensus 7 ~~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~l 55 (123)
T 2lf0_A 7 VEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARL 55 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999887 555677888888888877777655
No 87
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=48.25 E-value=46 Score=27.84 Aligned_cols=46 Identities=11% Similarity=0.129 Sum_probs=29.5
Q ss_pred HhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1302 12 EESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEF 57 (225)
Q Consensus 12 Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~ 57 (225)
+..+..+.+....++.++......+.|.+.+|.++..|....+..+
T Consensus 115 ~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~ 160 (305)
T 2efl_A 115 KQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYF 160 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666666777677777777777777776666665544
No 88
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=47.56 E-value=78 Score=22.96 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=15.2
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHH
Q psy1302 18 IRGNYSTLEQEVQAKNKKLQKIYSKYEE 45 (225)
Q Consensus 18 le~~yssLQeEve~KtkkLkKl~~kl~~ 45 (225)
+-.+|+.+++++.....++..+...++.
T Consensus 11 ~i~~~~~l~~~~~~l~~q~~~l~~~~~e 38 (117)
T 2zqm_A 11 MLGQLESYQQQLQLVVQQKQKVQLELTE 38 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446666666666555555554444433
No 89
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=47.46 E-value=1.3e+02 Score=25.65 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHH
Q psy1302 36 LQKIYSKYEEVKQDIQDIMDE 56 (225)
Q Consensus 36 LkKl~~kl~~~k~Ei~Dlq~E 56 (225)
++|+..++..++.++.....+
T Consensus 185 ~eK~~~k~~k~~~~~~~a~~~ 205 (337)
T 2x3v_A 185 QKKLVDKVDKCRQDVQKTQEK 205 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444333
No 90
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=47.40 E-value=79 Score=25.10 Aligned_cols=40 Identities=23% Similarity=0.502 Sum_probs=30.7
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHH
Q psy1302 20 GNYSTLEQEVQAKNKKLQKIYSKYEEVK---QDIQDIMDEFNR 59 (225)
Q Consensus 20 ~~yssLQeEve~KtkkLkKl~~kl~~~k---~Ei~Dlq~E~~~ 59 (225)
..|..|+.||+..++++..|-.+|..+. .|..++..||++
T Consensus 59 ~EYk~Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~~i~~EY~r 101 (140)
T 1xaw_A 59 QEYKSLQSVLDEINKELSRLDKELDDYREESEEYMAAADEYNR 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999988888754 455556666665
No 91
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=47.31 E-value=1.8e+02 Score=27.28 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=6.7
Q ss_pred HHHhHhhHHHHHhhcCC
Q psy1302 8 LDKKEESTEEIRGNYST 24 (225)
Q Consensus 8 le~~Eee~~~le~~yss 24 (225)
|++-+.....+..+.++
T Consensus 102 LqeLe~~l~~lsn~Ts~ 118 (464)
T 1m1j_B 102 LRDLKDRVAKFSDTSTT 118 (464)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhH
Confidence 33333333444444333
No 92
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=46.67 E-value=75 Score=22.53 Aligned_cols=69 Identities=14% Similarity=0.313 Sum_probs=39.0
Q ss_pred HHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 8 LDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIE 83 (225)
Q Consensus 8 le~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId 83 (225)
...-|....+++..|.. ++.....+|..+-..+..+++++...-.|| ++|++.--.|.-|+.-+.-+++
T Consensus 10 ~~sLE~~l~e~e~~~~~---~~~~~q~~i~~lE~eL~~~r~e~~~q~~EY----q~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 10 NESLERQMREMEENFAV---EAANYQDTIGRLQDEIQNMKEEMARHLREY----QDLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHc
Confidence 33444455555555532 233444445555555555555554444433 5788888888888877766654
No 93
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=46.28 E-value=32 Score=30.07 Aligned_cols=76 Identities=9% Similarity=0.136 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhcCChHHHHHHH
Q psy1302 24 TLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRK--------LIIENFIPIEELKRLE 95 (225)
Q Consensus 24 sLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~--------lIId~FIP~ee~~kI~ 95 (225)
+..+.+.....++..+...+.+++.++..+...+...-..+.+.++....-....+ +|++-|||.+.+.+|+
T Consensus 223 ~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gWvp~~~~~~~~ 302 (357)
T 3rrk_A 223 PLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYKAVADMAAGKYGAALMGWVPQKAKGKVE 302 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEECTTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcEEEEEEEeeHHHHHHHH
Confidence 66777777777888888888888888888877765555544444433332222222 3345679999999998
Q ss_pred Hhcc
Q psy1302 96 QRLV 99 (225)
Q Consensus 96 ~~a~ 99 (225)
..+.
T Consensus 303 ~~l~ 306 (357)
T 3rrk_A 303 EALG 306 (357)
T ss_dssp HTCC
T ss_pred HHHH
Confidence 7664
No 94
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=46.15 E-value=1.4e+02 Score=26.96 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=28.3
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQ 37 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLk 37 (225)
++..++...+--+...+-+.|+.+.+|+..|+.-+.
T Consensus 129 ~e~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~a~~ 164 (373)
T 3hhm_B 129 HEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIE 164 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHH
Confidence 456677777777788888999999999988876664
No 95
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=46.13 E-value=53 Score=31.61 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1302 62 RDLEQSQDELLKDLKLRKLIIE 83 (225)
Q Consensus 62 edll~tir~l~relkLk~lIId 83 (225)
.-|..+|++|..+++-+..=|+
T Consensus 134 rvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 134 QLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444
No 96
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=45.96 E-value=83 Score=36.48 Aligned_cols=12 Identities=33% Similarity=0.393 Sum_probs=5.2
Q ss_pred chHHHHHHHHcc
Q psy1302 180 SILSVLQAALQD 191 (225)
Q Consensus 180 ~~q~~l~~al~~ 191 (225)
+....|+.|++-
T Consensus 2218 ~f~~~LE~ai~f 2229 (3245)
T 3vkg_A 2218 SFMKNLESALRF 2229 (3245)
T ss_dssp --HHHHHHHHHH
T ss_pred hHHHHHHHHHHc
Confidence 344555555544
No 97
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=45.75 E-value=1.2e+02 Score=24.50 Aligned_cols=55 Identities=13% Similarity=0.256 Sum_probs=33.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q psy1302 21 NYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR---RDLEQSQDELLKDL 75 (225)
Q Consensus 21 ~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ER---edll~tir~l~rel 75 (225)
.-.+|+.|+..+..+++.+...++.-..-+.++++|+..=. .-+++..+.|.+|-
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777666666666666666665322 34455555555543
No 98
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=45.71 E-value=99 Score=25.43 Aligned_cols=47 Identities=9% Similarity=0.104 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 30 QAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 30 e~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
+..+.-|--.-.....++.+|.+|+++...+++......++|.+-+.
T Consensus 124 E~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~ 170 (175)
T 3mud_A 124 EVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLL 170 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566667778888888888888877777777766553
No 99
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=44.96 E-value=1.3e+02 Score=24.88 Aligned_cols=31 Identities=10% Similarity=0.130 Sum_probs=19.9
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNK 34 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~Ktk 34 (225)
+++++........-...+|.+...|++....
T Consensus 128 ~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~ 158 (305)
T 2efl_A 128 AQQHIETCWKQLESSKRRFERDCKEADRAQQ 158 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666677777777777765443
No 100
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=44.93 E-value=4.4 Score=31.26 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=3.4
Q ss_pred hhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Q psy1302 13 ESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYE 44 (225)
Q Consensus 13 ee~~~le~~yssLQeEve~KtkkLkKl~~kl~ 44 (225)
.-...++..+...+.|++.+.+.|+++..+|+
T Consensus 23 ~a~~~l~~~~~~~~~el~~~~~el~~~~~~lq 54 (143)
T 1u2m_A 23 GVSNTLENEFKGRASELQRMETDLQAKMKKLQ 54 (143)
T ss_dssp TTTTTTC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777777788777777777777765
No 101
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=44.75 E-value=45 Score=30.59 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1302 30 QAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIEN 84 (225)
Q Consensus 30 e~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~ 84 (225)
......|..+..+.+.++.+++.++.+.....+.|.+ +-..--+|.+.|.+.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~---~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ---SNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 4445566666666666777777766666666555543 223334556666554
No 102
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=44.74 E-value=1.3e+02 Score=24.61 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=14.6
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQ 30 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve 30 (225)
++|+..+..-+.....++..+.+||-.++
T Consensus 51 rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 51 RELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555554443
No 103
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=44.33 E-value=2.1e+02 Score=27.05 Aligned_cols=75 Identities=12% Similarity=0.167 Sum_probs=47.6
Q ss_pred HhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1302 12 EESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFI 86 (225)
Q Consensus 12 Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FI 86 (225)
.....++...|++..+=+......+++-....+.-..-+..+-++-++....|-++|...-..|++++-+|++..
T Consensus 71 kn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~ 145 (491)
T 1m1j_A 71 RQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQV 145 (491)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666677766666555555555555555555555555555566666777777777788888888877654
No 104
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=44.32 E-value=62 Score=22.29 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=23.4
Q ss_pred HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHH
Q psy1302 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIY 40 (225)
Q Consensus 3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~ 40 (225)
+++..|..-|...-.+-+.-++|.+|+....++|.+|.
T Consensus 17 evK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQ 54 (63)
T 2w6a_A 17 ELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Confidence 45566666666666666777777777665555444433
No 105
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=41.96 E-value=1.3e+02 Score=23.99 Aligned_cols=63 Identities=17% Similarity=0.339 Sum_probs=41.0
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHH---------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 17 EIRGNYSTLEQEVQAKNKKLQKIYSKYEE---------VKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRK 79 (225)
Q Consensus 17 ~le~~yssLQeEve~KtkkLkKl~~kl~~---------~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~ 79 (225)
++...-+.+..|.....-..+++-+..+. +.+-|..++..|..+|..+++-.+.+..++.-..
T Consensus 33 ~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv~ 104 (150)
T 4dci_A 33 EISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQVR 104 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555555555554443332 3345778999999999999999999988876443
No 106
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=41.00 E-value=31 Score=22.12 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=16.8
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKL 36 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkL 36 (225)
|..+-...+....+++++.|+||-|-...++.|
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 344444444445555555566655555544443
No 107
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=40.85 E-value=52 Score=23.37 Aligned_cols=51 Identities=8% Similarity=0.051 Sum_probs=22.3
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM 54 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq 54 (225)
+...|.+-|....-.+..-..|.+.|-...+.|.+|...++.+...+.++.
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444545555555555555555555544444443
No 108
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=40.84 E-value=71 Score=24.16 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=34.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 21 NYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRK 79 (225)
Q Consensus 21 ~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~ 79 (225)
.=++|.=+|+-..-+|..+-.-+-+++.|..+...++.+.+... ..|..++....
T Consensus 24 EKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~----~~L~~~~~~lk 78 (103)
T 4h22_A 24 EKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAH----SILQFQFAEVK 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 33556667777777777777777777777777777766665543 33444444433
No 109
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=40.32 E-value=51 Score=22.30 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 58 NRDRRDLEQSQDELLKDLKLRKLII 82 (225)
Q Consensus 58 ~~ERedll~tir~l~relkLk~lII 82 (225)
..+..+|...|..|..|+..+..+|
T Consensus 36 ~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 36 EKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777777777777555444
No 110
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=40.26 E-value=99 Score=28.24 Aligned_cols=23 Identities=22% Similarity=0.057 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q psy1302 63 DLEQSQDELLKDLKLRKLIIENF 85 (225)
Q Consensus 63 dll~tir~l~relkLk~lIId~F 85 (225)
++.....++..++.-..+-|=|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~ipN~ 104 (421)
T 1ses_A 82 RLEEALREKEARLEALLLQVPLP 104 (421)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC
Confidence 44444455555554444444443
No 111
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=40.17 E-value=1e+02 Score=26.71 Aligned_cols=29 Identities=24% Similarity=0.512 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy1302 34 KKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62 (225)
Q Consensus 34 kkLkKl~~kl~~~k~Ei~Dlq~E~~~ERe 62 (225)
+.++|+..++..++.++.....+|..--.
T Consensus 192 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~ 220 (350)
T 3aco_A 192 EQLKKLQDKIEKCKQDVLKTKEKYEKSLK 220 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666655555555555444333
No 112
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=39.67 E-value=56 Score=25.66 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy1302 33 NKKLQKIYSKYEEVKQDIQDIMDEFNR--DRRDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQ 96 (225)
Q Consensus 33 tkkLkKl~~kl~~~k~Ei~Dlq~E~~~--ERedll~tir~l~relkLk~lIId~FIP~ee~~kI~~ 96 (225)
...++++...++.++.++...+. |.. .=++....++++.++|...-.|.+.+--..+++.+..
T Consensus 39 D~eaq~li~eF~~~Q~~~~~~q~-~Gk~~~~~e~~~el~~l~~~l~~np~V~~y~~Ae~~l~~LL~ 103 (151)
T 2pih_A 39 NDKVSTIVNQIKALQKQAVNLKH-YEKHEALKQVEAKIDALQEELEEIPVIQEFRDSQMEVNDLLQ 103 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-cCCccchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 34666777778888888777765 221 2466667788888888887777777766655555444
No 113
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=38.63 E-value=75 Score=21.78 Aligned_cols=46 Identities=13% Similarity=0.263 Sum_probs=35.6
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVK 47 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k 47 (225)
..|..+++++.++...+-.+|.=.-.+|=.....|.+|-..|...+
T Consensus 4 ~~L~~~IE~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~LIn~Y~k~~ 49 (64)
T 2c0s_A 4 TKLNDRIEAKKKELIYLVEKYGFTHHKVISFSQELDRLLNLLIELK 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888887666777777888888877777654
No 114
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=38.52 E-value=1.7e+02 Score=24.33 Aligned_cols=76 Identities=13% Similarity=0.272 Sum_probs=42.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhcccc
Q psy1302 22 YSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYD 101 (225)
Q Consensus 22 yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~ee~~kI~~~a~wd 101 (225)
-++|+.|+..++. ++.....||+-|+.+-+.-+.+.-.....+.++...-.++.|.| +.+.=+.=+-++.
T Consensus 22 V~~L~~En~~L~~-------ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~---e~LTGl~V~~~~e 91 (190)
T 4emc_A 22 VANLVNENFVLSE-------KLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLY---EYLCNVRVHKSYE 91 (190)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHSEECCCCCC
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHH---HHccCcEEEEEEE
Confidence 3445555555554 44556666666666666666666556666667776666666654 2333333344455
Q ss_pred ccCCcc
Q psy1302 102 EESSQW 107 (225)
Q Consensus 102 Ee~~~W 107 (225)
++.+-|
T Consensus 92 d~~~~~ 97 (190)
T 4emc_A 92 DDSGLW 97 (190)
T ss_dssp CSSCEE
T ss_pred cCCCeE
Confidence 555555
No 115
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=38.46 E-value=26 Score=25.01 Aligned_cols=44 Identities=9% Similarity=0.200 Sum_probs=19.4
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVK 47 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k 47 (225)
|.-++.=+|....++...-...|.+++..+++++-|..+++++.
T Consensus 19 LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 19 LETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444455555555555555555444444
No 116
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=38.40 E-value=1.1e+02 Score=25.49 Aligned_cols=48 Identities=10% Similarity=0.087 Sum_probs=34.1
Q ss_pred HhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1302 10 KKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEF 57 (225)
Q Consensus 10 ~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~ 57 (225)
..+..+..+.+....++.++....+.+.|.+.+|..+..|...++..+
T Consensus 106 ~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~ 153 (301)
T 2efk_A 106 EMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTA 153 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666677777888888888888888888888777766655544
No 117
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=37.68 E-value=26 Score=25.87 Aligned_cols=32 Identities=9% Similarity=0.276 Sum_probs=14.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 44 EEVKQDIQDIMDEFNRDRRDLEQSQDELLKDL 75 (225)
Q Consensus 44 ~~~k~Ei~Dlq~E~~~ERedll~tir~l~rel 75 (225)
.++...+.|++..|..+.+++...|..+..+|
T Consensus 22 ~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL 53 (95)
T 3mov_A 22 RACLERIQELEDLLAKEKDNSRRMLTDKEREM 53 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444
No 118
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=37.39 E-value=68 Score=28.68 Aligned_cols=35 Identities=9% Similarity=-0.026 Sum_probs=16.9
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy1302 18 IRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQD 52 (225)
Q Consensus 18 le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~D 52 (225)
+.+++++|++|+......|...-..++.++..+..
T Consensus 3 ~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~ 37 (323)
T 1lwu_C 3 GQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRV 37 (323)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Confidence 34556666666655544444444444444444443
No 119
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=37.24 E-value=80 Score=22.90 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHH
Q psy1302 24 TLEQEVQAKNKKLQKIY-------SKYEEVKQDIQDIMD 55 (225)
Q Consensus 24 sLQeEve~KtkkLkKl~-------~kl~~~k~Ei~Dlq~ 55 (225)
.|-+||...+-++.-+- .||++-|.||.-++.
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~ 61 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQE 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45555555544443222 244445555544443
No 120
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=36.92 E-value=53 Score=29.39 Aligned_cols=12 Identities=8% Similarity=-0.086 Sum_probs=6.2
Q ss_pred CCCCCChhHHHH
Q psy1302 126 PQLRRPTTLKAR 137 (225)
Q Consensus 126 ~g~kRP~s~~a~ 137 (225)
+...|.-.+|-.
T Consensus 124 v~F~R~W~~Yk~ 135 (323)
T 1lwu_C 124 VNFTRDWVSYRE 135 (323)
T ss_dssp SCCCCCHHHHHH
T ss_pred CcccCCHHHHhh
Confidence 444555555554
No 121
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=36.92 E-value=1.1e+02 Score=25.79 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 32 KNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDL 75 (225)
Q Consensus 32 KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~rel 75 (225)
-...+++....|+.++.|+..++.+|++|.-.|+.....+.+-|
T Consensus 24 ~~~~~~~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Pl 67 (225)
T 2e50_A 24 SEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPF 67 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
Confidence 34455566677888888888888888888888777776666543
No 122
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.91 E-value=64 Score=29.38 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy1302 29 VQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDL 64 (225)
Q Consensus 29 ve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedl 64 (225)
++.++.+++.|..+..+++.+|++++.+...-.+.|
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 40 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEIL 40 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777777777777666655444433
No 123
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=36.67 E-value=1.1e+02 Score=28.83 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1302 61 RRDLEQSQDELLKDLKLRKLIIENFI 86 (225)
Q Consensus 61 Redll~tir~l~relkLk~lIId~FI 86 (225)
..++....+++..++.-..+-|=|++
T Consensus 132 i~~l~~~~~~~~~~l~~~l~~iPN~~ 157 (501)
T 1wle_A 132 LTLLYPKEAQLEEQFYLRALRLPNQT 157 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 33455555555555555444454444
No 124
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=36.40 E-value=1.2e+02 Score=21.77 Aligned_cols=55 Identities=13% Similarity=0.317 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q psy1302 24 TLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRD---RRDLEQSQDELLKDLKLR 78 (225)
Q Consensus 24 sLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~E---Redll~tir~l~relkLk 78 (225)
.|+..++..+.---++-..+..++..+.|...-|+.| |.+.+..+..|.|.+.=.
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a 61 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNA 61 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4666777777766778888888999999998888877 888888888888776543
No 125
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=36.16 E-value=67 Score=24.12 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=17.7
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy1302 20 GNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQD 52 (225)
Q Consensus 20 ~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~D 52 (225)
+.|.+|.++++..+.--.+|......++.++.-
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555555543
No 126
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=35.86 E-value=1.1e+02 Score=21.53 Aligned_cols=34 Identities=9% Similarity=0.376 Sum_probs=15.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 42 KYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDL 75 (225)
Q Consensus 42 kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~rel 75 (225)
.-.+++..|.|+...|..+..++...|..+..+|
T Consensus 9 ~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL 42 (84)
T 1gk4_A 9 TNESLERQMREMEENFAVEAANYQDTIGRLQDEI 42 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555544444444444444443
No 127
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=35.83 E-value=55 Score=25.72 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=33.8
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHH---HHHHHHHHHHHHHHHHH
Q psy1302 20 GNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDI--MDEFNRD---RRDLEQSQDELLKDLKL 77 (225)
Q Consensus 20 ~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dl--q~E~~~E---Redll~tir~l~relkL 77 (225)
+-|.-|++|++.++.+...+-..++.+... .|+ ..+|..- ...+...|++|.+.|.-
T Consensus 10 ~g~~~L~~el~~~~~~r~~~~~~i~~A~~~-GDlsEnaey~aak~~q~~~e~ri~~L~~~L~~ 71 (156)
T 2f23_A 10 AGYERLMQQLERERERLQEATKILQELMES-SDDYDDSGLEAAKQEKARIEARIDSLEDILSR 71 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-SCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888888777777777777777653 333 1222222 22334456666665554
No 128
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=35.82 E-value=1e+02 Score=29.04 Aligned_cols=34 Identities=3% Similarity=0.092 Sum_probs=19.4
Q ss_pred hHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 14 STEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVK 47 (225)
Q Consensus 14 e~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k 47 (225)
+.+.+.+.+.+++.+++....+.+++-..+.+++
T Consensus 71 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~ 104 (501)
T 1wle_A 71 GIISTWQELRQLREQIRSLEEEKEAVTEAVRALV 104 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666666666666555555555444433
No 129
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=35.74 E-value=1.4e+02 Score=22.61 Aligned_cols=31 Identities=10% Similarity=0.287 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1302 24 TLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM 54 (225)
Q Consensus 24 sLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq 54 (225)
++|.|+......+..|...+..++..+.++.
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~ve~lE 38 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTVSTLE 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666654
No 130
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=35.59 E-value=1.4e+02 Score=22.62 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=11.5
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHH
Q psy1302 17 EIRGNYSTLEQEVQAKNKKLQKI 39 (225)
Q Consensus 17 ~le~~yssLQeEve~KtkkLkKl 39 (225)
++..+...|.-|++.-..|++..
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~ 29 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQ 29 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554444443
No 131
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=35.58 E-value=1e+02 Score=20.77 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q psy1302 26 EQEVQAKNKKLQKIYSKYEEVKQDI 50 (225)
Q Consensus 26 QeEve~KtkkLkKl~~kl~~~k~Ei 50 (225)
+++++..+..-..|..++..++.|+
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 132
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=35.26 E-value=1.1e+02 Score=25.34 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 29 VQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLK 73 (225)
Q Consensus 29 ve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~r 73 (225)
.+....-|.-+...+..++.++..++.++++=+.|..+.+.+++|
T Consensus 140 ~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlEk 184 (184)
T 3w03_C 140 AEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFEK 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344556677788888888999999999988888887777766653
No 133
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=34.79 E-value=1.5e+02 Score=22.60 Aligned_cols=49 Identities=12% Similarity=0.140 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 30 QAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRK 79 (225)
Q Consensus 30 e~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~ 79 (225)
+..+-+|.-.-..|.....+|..+..+-.+ ++.-+++|--|..|+..+.
T Consensus 27 ~~L~~~L~~AEeaL~~Kq~~idelk~ei~q-~~~~lE~I~vLkaQv~IY~ 75 (110)
T 2v4h_A 27 EDLRQQLQQAEEALVAKQELIDKLKEEAEQ-HKIVMETVPVLKAQADIYK 75 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444455555555444 3344466777776666554
No 134
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=33.92 E-value=55 Score=29.26 Aligned_cols=42 Identities=10% Similarity=0.118 Sum_probs=24.0
Q ss_pred hhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1302 13 ESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM 54 (225)
Q Consensus 13 ee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq 54 (225)
++.+.+|.+-.+++.++...+..|+.+..++++++..|..+.
T Consensus 4 ~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~ 45 (319)
T 1fzc_C 4 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLE 45 (319)
T ss_dssp ------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777766666666655555443
No 135
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=33.89 E-value=1.3e+02 Score=21.74 Aligned_cols=72 Identities=18% Similarity=0.305 Sum_probs=50.0
Q ss_pred hhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1302 13 ESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVK-QDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIEN 84 (225)
Q Consensus 13 ee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k-~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~ 84 (225)
+++..+...|.|--+.|-.....-+.|..++..++ ..-..+..-|+.+..+|-..|..++.+-.-..+=|+|
T Consensus 9 e~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 9 VELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777888877777776666666666666655 3445566678888888888888887776666665666
No 136
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=33.58 E-value=47 Score=23.81 Aligned_cols=9 Identities=11% Similarity=0.121 Sum_probs=2.5
Q ss_pred HhhcCCHHH
Q psy1302 19 RGNYSTLEQ 27 (225)
Q Consensus 19 e~~yssLQe 27 (225)
...-++|..
T Consensus 9 ~~q~~~Le~ 17 (86)
T 1x8y_A 9 QCQLAAKEA 17 (86)
T ss_dssp ---CTTHHH
T ss_pred HHHHHHHHH
Confidence 333444433
No 137
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=33.31 E-value=98 Score=26.20 Aligned_cols=37 Identities=5% Similarity=0.039 Sum_probs=17.1
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1302 18 IRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM 54 (225)
Q Consensus 18 le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq 54 (225)
++..+..+|.+.....+.+.|.+.+|..+..+...++
T Consensus 141 ~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~e~e~a~ 177 (312)
T 3abh_A 141 AEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAI 177 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444445555555555444444443
No 138
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=32.43 E-value=81 Score=22.86 Aligned_cols=27 Identities=4% Similarity=0.268 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1302 31 AKNKKLQKIYSKYEEVKQDIQDIMDEF 57 (225)
Q Consensus 31 ~KtkkLkKl~~kl~~~k~Ei~Dlq~E~ 57 (225)
...++++.+-..++.+...+.+++.++
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l 100 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKL 100 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444443333
No 139
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=32.31 E-value=1.4e+02 Score=21.64 Aligned_cols=18 Identities=6% Similarity=0.174 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy1302 57 FNRDRRDLEQSQDELLKD 74 (225)
Q Consensus 57 ~~~ERedll~tir~l~re 74 (225)
|..+.++|++.|....+.
T Consensus 56 h~~ei~~le~~i~rhk~~ 73 (84)
T 1gmj_A 56 HAKEIERLQKEIERHKQS 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 140
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=32.09 E-value=48 Score=18.99 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q psy1302 36 LQKIYSKYEEVKQDIQDIMDEF 57 (225)
Q Consensus 36 LkKl~~kl~~~k~Ei~Dlq~E~ 57 (225)
++.|..|-..+++||..+.-|.
T Consensus 2 irrlkqknarlkqeiaaleyei 23 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEI 23 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHH
Confidence 4556666677778887775543
No 141
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=31.16 E-value=1.3e+02 Score=24.76 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHH
Q psy1302 23 STLEQEVQAKNKKLQKIY----SKYEEVKQDIQDIMDEFNRDRRDLE 65 (225)
Q Consensus 23 ssLQeEve~KtkkLkKl~----~kl~~~k~Ei~Dlq~E~~~ERedll 65 (225)
..+.++++....+|..+. .+|.-+.+|+...+...++|++++.
T Consensus 38 ~~~~~~~~~l~~~l~e~~~~~~d~~lR~~Ae~eN~rkR~~ke~~~~~ 84 (197)
T 1dkg_A 38 DPRDEKVANLEAQLAEAQTRERDGILRVKAEMENLRRRTELDIEKAH 84 (197)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555444 4666666666666666666666543
No 142
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=30.91 E-value=80 Score=23.83 Aligned_cols=30 Identities=37% Similarity=0.312 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1302 32 KNKKLQKIYSKYEEVKQDIQDIMDEFNRDR 61 (225)
Q Consensus 32 KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ER 61 (225)
..+++++...+++.++..|..++.|..+.|
T Consensus 87 l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 87 WKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566666777777777777777766554
No 143
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=30.90 E-value=2e+02 Score=22.91 Aligned_cols=39 Identities=8% Similarity=0.169 Sum_probs=25.9
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy1302 21 NYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNR 59 (225)
Q Consensus 21 ~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ 59 (225)
...+|...+++.+..++.+...+..++.++..+..+++.
T Consensus 67 ~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aK 105 (146)
T 2xnx_M 67 ELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAK 105 (146)
T ss_dssp TTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHH
Confidence 346777777777777777777777766666666665543
No 144
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=30.76 E-value=1.8e+02 Score=22.18 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=45.5
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1302 20 GNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENF 85 (225)
Q Consensus 20 ~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~F 85 (225)
..+..||.++...++.|.|+..--..+...+..-.++|..+...|.+.+..-+..|+=.......+
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~ 71 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQA 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777777777777777777777777777777777777666555554443
No 145
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=30.75 E-value=1.2e+02 Score=20.15 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 35 KLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIE 83 (225)
Q Consensus 35 kLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId 83 (225)
+|..+...+..+++++...-.|| ++|++.--.|+.|+.-+.-+++
T Consensus 8 ~i~~le~el~~~r~e~~~q~~eY----q~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 8 KVEELLSKNYHLENEVARLKKLV----GDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHc
Confidence 44444555555555555544444 5788888888988887776665
No 146
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=30.41 E-value=51 Score=21.05 Aligned_cols=24 Identities=46% Similarity=0.560 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 24 TLEQEVQAKNKKLQKIYSKYEEVK 47 (225)
Q Consensus 24 sLQeEve~KtkkLkKl~~kl~~~k 47 (225)
.|.-|+.+..+||--|..|+++++
T Consensus 24 aleselqalekklaalksklqalk 47 (48)
T 1g6u_A 24 ALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566667777777777776654
No 147
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=29.60 E-value=33 Score=30.27 Aligned_cols=10 Identities=40% Similarity=0.375 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q psy1302 70 ELLKDLKLRK 79 (225)
Q Consensus 70 ~l~relkLk~ 79 (225)
+|.+.+.++.
T Consensus 221 ~Lqk~~~~~~ 230 (315)
T 2ve7_A 221 RLQKSADLYK 230 (315)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 148
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=29.55 E-value=1.6e+02 Score=21.14 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q psy1302 34 KKLQKIYSKYEEVKQDIQDIMD 55 (225)
Q Consensus 34 kkLkKl~~kl~~~k~Ei~Dlq~ 55 (225)
.-+-.|...+..++.||..|..
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRG 41 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRG 41 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 3344566666677777766664
No 149
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=29.53 E-value=2.3e+02 Score=25.74 Aligned_cols=50 Identities=2% Similarity=0.045 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 27 QEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK 76 (225)
Q Consensus 27 eEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk 76 (225)
+..+..+..++.+...|+.++..+.+--..-..+.-.|+..|..|.++|.
T Consensus 71 ~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~ 120 (463)
T 2d4y_A 71 GKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQIS 120 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555566666666666553
No 150
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=29.48 E-value=1.3e+02 Score=22.30 Aligned_cols=25 Identities=8% Similarity=0.317 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1302 33 NKKLQKIYSKYEEVKQDIQDIMDEF 57 (225)
Q Consensus 33 tkkLkKl~~kl~~~k~Ei~Dlq~E~ 57 (225)
+++.|.|..|-..+..|+.+-.+.|
T Consensus 70 qs~aK~LRnKA~~L~~eLe~F~~~y 94 (96)
T 1t3j_A 70 QNNSKLLRNKAVQLESELENFSKQF 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444433
No 151
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=29.25 E-value=1.1e+02 Score=22.84 Aligned_cols=33 Identities=12% Similarity=0.322 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1302 25 LEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEF 57 (225)
Q Consensus 25 LQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~ 57 (225)
+.+-++...+|++.+...+..+...+..++..+
T Consensus 86 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i 118 (133)
T 1fxk_C 86 FEDAMESIKSQKNELESTLQKMGENLRAITDIM 118 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555554444433
No 152
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.00 E-value=54 Score=25.93 Aligned_cols=80 Identities=11% Similarity=0.407 Sum_probs=0.0
Q ss_pred HHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHH--------------HHHHHHHhHHHHH-----------HHHHHH
Q psy1302 6 QELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYS--------------KYEEVKQDIQDIM-----------DEFNRD 60 (225)
Q Consensus 6 qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~--------------kl~~~k~Ei~Dlq-----------~E~~~E 60 (225)
.....+..+...+...|+.++.++..+...+++|.. ....+..|+.||- ..=.++
T Consensus 18 ~~~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~ 97 (135)
T 2e7s_A 18 ASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARME 97 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1302 61 RRDLEQSQDELLKDLKLRKLIIENF 85 (225)
Q Consensus 61 Redll~tir~l~relkLk~lIId~F 85 (225)
|..+..-...|.++++=+..+|+..
T Consensus 98 ~~~~e~r~~~L~~ql~e~e~ll~~l 122 (135)
T 2e7s_A 98 KYAIEILNKRLTEQLREKDMLLDTL 122 (135)
T ss_dssp HHHHHHHHHHHHHTTTHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 153
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=28.99 E-value=67 Score=24.89 Aligned_cols=54 Identities=15% Similarity=0.290 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----hHHHHHHHHhccccccCCc
Q psy1302 53 IMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIP-----IEELKRLEQRLVYDEESSQ 106 (225)
Q Consensus 53 lq~E~~~ERedll~tir~l~relkLk~lIId~FIP-----~ee~~kI~~~a~wdEe~~~ 106 (225)
........++.|.+.|..|.+-+.....+|+.+-- .+.+.+|.+...||.++.+
T Consensus 81 ~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~Li~~~~~~~~~~~ 139 (146)
T 3hh0_A 81 FLRQMHFQREVLLAEQERIAKVLSHMDEMTKKFQKEERVNVALFSSFLQTFIWEKENKE 139 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHcccccc
Confidence 33445567888888888888888888888876533 4567788889999887643
No 154
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=28.37 E-value=58 Score=21.48 Aligned_cols=7 Identities=0% Similarity=0.553 Sum_probs=2.5
Q ss_pred HHhHHHH
Q psy1302 47 KQDIQDI 53 (225)
Q Consensus 47 k~Ei~Dl 53 (225)
+.|+.+|
T Consensus 25 k~E~~eL 31 (53)
T 2yy0_A 25 RLELAEM 31 (53)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 155
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=28.19 E-value=2.3e+02 Score=22.61 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=42.4
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 21 NYSTLEQEVQAKNKKLQKIYSKYEEVK----QDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLI 81 (225)
Q Consensus 21 ~yssLQeEve~KtkkLkKl~~kl~~~k----~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lI 81 (225)
.+.|+.+ |+.--++|..+...+..+. .||..+++.|..+...|.+.+..|+..|.-+...
T Consensus 11 ~i~~~~~-~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~ 74 (171)
T 2p2u_A 11 IVADIRQ-AEGALAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATFATL 74 (171)
T ss_dssp CCCSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455544 7777777776666666554 6677788888888888888888888777766544
No 156
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=28.18 E-value=84 Score=27.62 Aligned_cols=6 Identities=0% Similarity=0.501 Sum_probs=2.2
Q ss_pred cCCHHH
Q psy1302 22 YSTLEQ 27 (225)
Q Consensus 22 yssLQe 27 (225)
|..+.+
T Consensus 165 ~~~~~~ 170 (315)
T 2ve7_A 165 FDEMNA 170 (315)
T ss_dssp CHHHHH
T ss_pred hhHHHH
Confidence 333333
No 157
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=28.11 E-value=1.8e+02 Score=27.38 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=16.7
Q ss_pred hHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Q psy1302 14 STEEIRGNYSTLEQEVQAKNKKLQKIYSKYEE 45 (225)
Q Consensus 14 e~~~le~~yssLQeEve~KtkkLkKl~~kl~~ 45 (225)
+.+.+.+.+.+++.+++....+.+.+-..+..
T Consensus 34 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 65 (485)
T 3qne_A 34 EIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGK 65 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666665555555544444433
No 158
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=27.82 E-value=2.5e+02 Score=22.88 Aligned_cols=47 Identities=17% Similarity=0.276 Sum_probs=26.8
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1302 15 TEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR 61 (225)
Q Consensus 15 ~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ER 61 (225)
..+++++..+|++|++....++.++..--+.+...|.++..|...--
T Consensus 92 ~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 92 IGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555566666666666655555555555555555555555554433
No 159
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=27.45 E-value=2.5e+02 Score=22.85 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=10.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Q psy1302 45 EVKQDIQDIMDEFNRDRRDLEQSQ 68 (225)
Q Consensus 45 ~~k~Ei~Dlq~E~~~ERedll~ti 68 (225)
.++.|+...+++|+.--..|.+.+
T Consensus 183 kae~el~~ak~~ye~ln~~L~~eL 206 (251)
T 2fic_A 183 KAEEELIKAQKVFEEMNVDLQEEL 206 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333333
No 160
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=27.23 E-value=54 Score=21.61 Aligned_cols=15 Identities=13% Similarity=0.392 Sum_probs=8.5
Q ss_pred hHHHHHhhcCCHHHH
Q psy1302 14 STEEIRGNYSTLEQE 28 (225)
Q Consensus 14 e~~~le~~yssLQeE 28 (225)
....|+++|+.|.|.
T Consensus 14 ~l~~LEkqF~~LkEq 28 (49)
T 2xus_A 14 EMLDLEKQFSELKEK 28 (49)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566666666553
No 161
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=27.22 E-value=1.1e+02 Score=19.39 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy1302 26 EQEVQAKNKKLQKIYSKYEEVKQDIQ 51 (225)
Q Consensus 26 QeEve~KtkkLkKl~~kl~~~k~Ei~ 51 (225)
-||++...-.||.|..-++-+++|+.
T Consensus 12 iqeleernaelknlkehlkfakaele 37 (46)
T 3he4_B 12 IQELEERNAELKNLKEHLKFAKAELE 37 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHhHHHHHHHHHHHHH
Confidence 45666677777777777777777653
No 162
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=27.09 E-value=99 Score=24.95 Aligned_cols=50 Identities=12% Similarity=0.138 Sum_probs=31.7
Q ss_pred HHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1302 7 ELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDE 56 (225)
Q Consensus 7 ele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E 56 (225)
.++.+.+.+..+-..|++.-+|.+.-|.-+++--.+|..+++-++|++.-
T Consensus 35 m~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekK 84 (158)
T 3tul_A 35 MIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKK 84 (158)
T ss_dssp HHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 34455555666666777777777777777776666677776666666654
No 163
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=26.84 E-value=93 Score=17.65 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q psy1302 60 DRRDLEQSQDELLK 73 (225)
Q Consensus 60 ERedll~tir~l~r 73 (225)
|-+||.+.+|.|.+
T Consensus 9 eledlqerlrklrk 22 (27)
T 3twe_A 9 ELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 164
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=26.74 E-value=1.7e+02 Score=20.61 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=15.4
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQA 31 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~ 31 (225)
+.++|++.|...-+++++..+|++.++.
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~ 32 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEK 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4455666555555555555555555443
No 165
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=26.34 E-value=1.4e+02 Score=19.66 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1302 28 EVQAKNKKLQKIYSKYEEVKQDIQDIMDE 56 (225)
Q Consensus 28 Eve~KtkkLkKl~~kl~~~k~Ei~Dlq~E 56 (225)
.|...+.|+.-|......++.++...++|
T Consensus 12 ~V~~L~~kVdqLssdV~al~~~v~~ak~e 40 (52)
T 1jcd_A 12 DAQTANAKADQASNDANAARSDAQAAKDD 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 166
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=26.29 E-value=1.8e+02 Score=20.66 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=12.5
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHH
Q psy1302 18 IRGNYSTLEQEVQAKNKKLQKIYSKY 43 (225)
Q Consensus 18 le~~yssLQeEve~KtkkLkKl~~kl 43 (225)
+-.+|+.++.++.....++..+...+
T Consensus 6 ~i~~f~~lq~~~~~l~~q~~~l~~~~ 31 (107)
T 1fxk_A 6 QLAQFQQLQQQAQAISVQKQTVEMQI 31 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555544444444433
No 167
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=25.65 E-value=1.9e+02 Score=20.96 Aligned_cols=47 Identities=6% Similarity=0.330 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 37 QKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIE 83 (225)
Q Consensus 37 kKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId 83 (225)
..||.+.-.++..|.-+-..|...+++|.+-...+.+..+.+..+++
T Consensus 38 q~LY~~v~~lRPkL~~li~kysqKk~eL~~Ln~kl~~a~~~Yd~lle 84 (88)
T 2pjw_H 38 GDMYGSVTPLRPQVTRMLGKYAKEKEDMLSLRQVLANAERSYNQLMD 84 (88)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444455555555555555555555555555444
No 168
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=25.51 E-value=1.9e+02 Score=20.72 Aligned_cols=16 Identities=6% Similarity=0.304 Sum_probs=6.2
Q ss_pred HHHHhhcCCHHHHHHH
Q psy1302 16 EEIRGNYSTLEQEVQA 31 (225)
Q Consensus 16 ~~le~~yssLQeEve~ 31 (225)
.++...-..|+.||..
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~ 38 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDS 38 (83)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333334444333
No 169
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=25.21 E-value=2e+02 Score=24.14 Aligned_cols=61 Identities=11% Similarity=0.317 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhcCCh-HHHHHHHH
Q psy1302 36 LQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLR-----KLIIENFIPI-EELKRLEQ 96 (225)
Q Consensus 36 LkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk-----~lIId~FIP~-ee~~kI~~ 96 (225)
+..+..++..++.++.++.+.|.|-.-|+..--+...|+..-. .-++..|+|. +.+++...
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~ 127 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALK 127 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3445556666666666666666666666666666666655432 2334455553 55665554
No 170
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=25.04 E-value=1e+02 Score=20.44 Aligned_cols=25 Identities=16% Similarity=0.447 Sum_probs=21.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Q psy1302 45 EVKQDIQDIMDEFNRDRRDLEQSQD 69 (225)
Q Consensus 45 ~~k~Ei~Dlq~E~~~ERedll~tir 69 (225)
....||.+++.-|+..|+=+++.|.
T Consensus 25 ~Me~Ei~elr~RY~~KRqPIldAi~ 49 (51)
T 2jo8_A 25 MMEQEIEEIRQKYQSKRQPILDAIE 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHh
Confidence 3568999999999999999988774
No 171
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=24.95 E-value=34 Score=29.31 Aligned_cols=35 Identities=14% Similarity=0.271 Sum_probs=13.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1302 22 YSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDE 56 (225)
Q Consensus 22 yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E 56 (225)
|..+.++.+....+++.+...+++++++|++++.+
T Consensus 143 ~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e 177 (250)
T 2ve7_C 143 YMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKE 177 (250)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444445555555555544
No 172
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=24.89 E-value=2e+02 Score=26.50 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy1302 60 DRRDLEQSQDELLKDLKLRKLIIENFI 86 (225)
Q Consensus 60 ERedll~tir~l~relkLk~lIId~FI 86 (225)
+..++.....++..++.-..+-|=|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~ipN~~ 110 (455)
T 2dq0_A 84 RIGELENEVEELKKKIDYYLWRLPNIT 110 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 334555555555555555444454444
No 173
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=23.97 E-value=39 Score=31.95 Aligned_cols=40 Identities=20% Similarity=0.318 Sum_probs=16.1
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1302 18 IRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEF 57 (225)
Q Consensus 18 le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~ 57 (225)
+++.|..|+++++....-|..-....+-++.|+.++.+.|
T Consensus 421 l~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~y 460 (470)
T 3ilw_A 421 IIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRH 460 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444433333333333334444444444444
No 174
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=23.91 E-value=2.3e+02 Score=26.82 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=16.9
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy1302 17 EIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMD 55 (225)
Q Consensus 17 ~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~ 55 (225)
+|+.++.-|++-|+..-..|+-|+..+..+..+|+-|+.
T Consensus 115 eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~ 153 (491)
T 1m1j_A 115 ELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEV 153 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444434444444444444444444443
No 175
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=23.66 E-value=3.5e+02 Score=24.86 Aligned_cols=52 Identities=12% Similarity=0.204 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q psy1302 27 QEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNR------DRRDLEQSQDELLKDLKLR 78 (225)
Q Consensus 27 eEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~------ERedll~tir~l~relkLk 78 (225)
+++-..-++.+++..++.+++++.+.+..+... +.+.|....+++..+++-.
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~ 88 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGEL 88 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444433331 2344555555555555433
No 176
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=23.60 E-value=38 Score=33.63 Aligned_cols=46 Identities=26% Similarity=0.312 Sum_probs=23.1
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1302 16 EEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR 61 (225)
Q Consensus 16 ~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ER 61 (225)
..+++.|..|+++++....-|..-....+-++.|+.++.+.|..+|
T Consensus 405 ~kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~EL~~i~~kygd~R 450 (716)
T 1zvu_A 405 MKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDR 450 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3444455555555555555554444444555555555555554443
No 177
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=23.60 E-value=2.9e+02 Score=25.88 Aligned_cols=31 Identities=10% Similarity=0.141 Sum_probs=14.2
Q ss_pred HHHhHhhHHHHHhhcCCHHHHHHHHHHHHHH
Q psy1302 8 LDKKEESTEEIRGNYSTLEQEVQAKNKKLQK 38 (225)
Q Consensus 8 le~~Eee~~~le~~yssLQeEve~KtkkLkK 38 (225)
+-+.++++-.+.....+|+.+....+|.+.+
T Consensus 35 ~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 65 (485)
T 3qne_A 35 IIAEYKEWVKLRFDLDEHNKKLNSVQKEIGK 65 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433
No 178
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=23.41 E-value=1.3e+02 Score=21.03 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=5.7
Q ss_pred HhHhhHHHHHhhcCCH
Q psy1302 10 KKEESTEEIRGNYSTL 25 (225)
Q Consensus 10 ~~Eee~~~le~~yssL 25 (225)
++++....+...-..|
T Consensus 16 eQD~~Ld~L~~~v~~L 31 (82)
T 2nps_D 16 MQDEQLELVSGSIGVL 31 (82)
T ss_dssp --CCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 179
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=23.23 E-value=1.3e+02 Score=20.47 Aligned_cols=45 Identities=16% Similarity=0.261 Sum_probs=30.7
Q ss_pred hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEV 46 (225)
Q Consensus 2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~ 46 (225)
..|..+++.+.++...+-.+|.=.-.+|=..+..|.+|-..|...
T Consensus 4 ~~L~~~IE~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~LIn~Y~k~ 48 (62)
T 2bzb_A 4 GQLKNKIENKKKELIQLVARHGLDHDKVLLFSRDLDKLINKFMNV 48 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777666666666677777776666543
No 180
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=23.12 E-value=1e+02 Score=22.00 Aligned_cols=24 Identities=13% Similarity=0.356 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Q psy1302 33 NKKLQKIYSKYEEVKQDIQDIMDE 56 (225)
Q Consensus 33 tkkLkKl~~kl~~~k~Ei~Dlq~E 56 (225)
.++++.+...+..+...+.+++.+
T Consensus 71 ~~~~e~i~~~i~~le~~~~~~~~~ 94 (107)
T 1fxk_A 71 QEKLETLQLREKTIERQEERVMKK 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344333333333
No 181
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=22.95 E-value=62 Score=28.12 Aligned_cols=35 Identities=17% Similarity=0.332 Sum_probs=15.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1302 22 YSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDE 56 (225)
Q Consensus 22 yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E 56 (225)
|..|+.+++.++.+.++|...++.++.||..+++|
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeE 90 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREE 90 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 182
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=22.74 E-value=1.3e+02 Score=23.23 Aligned_cols=34 Identities=6% Similarity=0.259 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1302 25 LEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN 58 (225)
Q Consensus 25 LQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~ 58 (225)
+.+-++...++++.+...+..+...+..++..+.
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~ 129 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIG 129 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555544443
No 183
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=22.68 E-value=2.2e+02 Score=20.50 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1302 60 DRRDLEQSQDELLKDLKLRK 79 (225)
Q Consensus 60 ERedll~tir~l~relkLk~ 79 (225)
.|+.|...+..|..|..-++
T Consensus 49 ~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 49 QREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 44445556666655554443
No 184
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=22.68 E-value=2.7e+02 Score=24.81 Aligned_cols=74 Identities=19% Similarity=0.265 Sum_probs=0.0
Q ss_pred ChHHHHHHHHhH-hhHHHHHhhcCCHHHHHHHHH---------HHHHHHHHHHHHHHHhHHHHHHHHH------------
Q psy1302 1 MIEMKQELDKKE-ESTEEIRGNYSTLEQEVQAKN---------KKLQKIYSKYEEVKQDIQDIMDEFN------------ 58 (225)
Q Consensus 1 ~~el~qele~~E-ee~~~le~~yssLQeEve~Kt---------kkLkKl~~kl~~~k~Ei~Dlq~E~~------------ 58 (225)
+..+++++...- .+..-...+|...-.+++... +.+.|+..+++.+..++.....+|.
T Consensus 121 ~~klqk~~~k~~~~~lekaKk~Y~~~cke~e~A~~k~~~~~k~ke~eK~~~k~~k~~~~~~~a~neY~~~l~~~N~~~~~ 200 (406)
T 4dyl_A 121 WQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKDKDRDKAKDKYVRSLWKLFAHHNRYVLGVRAAQLHHQH 200 (406)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---HHHHHHHHHHHHHHHH
Q psy1302 59 ---RDRRDLEQSQDELLKD 74 (225)
Q Consensus 59 ---~ERedll~tir~l~re 74 (225)
.+..++++.+..++.+
T Consensus 201 yy~~~lp~~~d~lQ~lEe~ 219 (406)
T 4dyl_A 201 HHQLLLPGLLRSLQDLHEE 219 (406)
T ss_dssp HHHTHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHH
No 185
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=22.50 E-value=2.1e+02 Score=20.14 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=12.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 23 STLEQEVQAKNKKLQKIYSKYEEVK 47 (225)
Q Consensus 23 ssLQeEve~KtkkLkKl~~kl~~~k 47 (225)
..|.-|.+...+++++++..+..++
T Consensus 9 ~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 9 EILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554444443
No 186
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=22.28 E-value=3.3e+02 Score=25.80 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=16.2
Q ss_pred HHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHH
Q psy1302 5 KQELDKKEESTEEIRGNYSTLEQEVQAKNKKL 36 (225)
Q Consensus 5 ~qele~~Eee~~~le~~yssLQeEve~KtkkL 36 (225)
|.+|+.-.....++...|.--..|..+++..|
T Consensus 15 q~elarvqkana~aka~Ye~~~ae~~a~n~~i 46 (497)
T 3iox_A 15 QTELARVQKANADAKAAYEAAVAANNAANAAL 46 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 44555555555555555555444444444443
No 187
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=22.26 E-value=2.3e+02 Score=20.60 Aligned_cols=41 Identities=20% Similarity=0.409 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHH
Q psy1302 24 TLEQEVQAKNKKLQKIYSKYEEVKQ-----DIQDIMDEFNRDRRDL 64 (225)
Q Consensus 24 sLQeEve~KtkkLkKl~~kl~~~k~-----Ei~Dlq~E~~~ERedl 64 (225)
.|+|+++.|.--+..|...|+.+.. ||.........-|.||
T Consensus 26 ~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL 71 (90)
T 4b6x_A 26 ALRQEIEDKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADL 71 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHH
Confidence 4788888888777777777777653 3444444444444444
No 188
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=22.20 E-value=2e+02 Score=19.97 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=8.3
Q ss_pred hhcCCHHHHHHHHHHHHHH
Q psy1302 20 GNYSTLEQEVQAKNKKLQK 38 (225)
Q Consensus 20 ~~yssLQeEve~KtkkLkK 38 (225)
.++..++.|+......+..
T Consensus 43 ~~h~~l~~ei~~~~~~v~~ 61 (118)
T 3uul_A 43 ATHETFMMELSAHQSSVGS 61 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 189
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=22.13 E-value=1.5e+02 Score=24.73 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 37 QKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKD 74 (225)
Q Consensus 37 kKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~re 74 (225)
.+....|...-......+.+|..+...+++.+..|..+
T Consensus 187 ~~a~~~Y~~~v~~~n~~~~~~~~~~p~~~~~~Q~lee~ 224 (290)
T 3i2w_A 187 QKCREKYEQAIAEITKYNSVYIEDMTSVFEKCQTFEKT 224 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555566666666666666655555443
No 190
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=22.09 E-value=9.1 Score=31.45 Aligned_cols=47 Identities=17% Similarity=0.331 Sum_probs=31.9
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy1302 20 GNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQ 66 (225)
Q Consensus 20 ~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~ 66 (225)
.....+.++++...+++..+..+|.-+.+|+.......++|++++..
T Consensus 19 ~e~~~l~~~~~~l~~e~~e~~d~~lR~~Ae~eN~rkR~~rE~e~~~~ 65 (177)
T 3a6m_A 19 QEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKARER 65 (177)
T ss_dssp HHHSSTTTSTTGGGGTSSSHHHHHHTTTTTTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555566667778888888888888888888876644
No 191
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=22.04 E-value=1.3e+02 Score=22.95 Aligned_cols=19 Identities=5% Similarity=0.202 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1302 52 DIMDEFNRDRRDLEQSQDE 70 (225)
Q Consensus 52 Dlq~E~~~ERedll~tir~ 70 (225)
-|.+-|..-..+..+.+..
T Consensus 22 RLKevF~~ks~eFReav~~ 40 (123)
T 4dzo_A 22 RLKEVFQTKIQEFRKACYT 40 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433
No 192
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=21.98 E-value=1.9e+02 Score=19.59 Aligned_cols=14 Identities=14% Similarity=0.257 Sum_probs=6.4
Q ss_pred HHHHHHhHHHHHHH
Q psy1302 43 YEEVKQDIQDIMDE 56 (225)
Q Consensus 43 l~~~k~Ei~Dlq~E 56 (225)
++.++.||.++...
T Consensus 51 l~~~k~Ei~elrr~ 64 (77)
T 3trt_A 51 LRQAKQESTEYRRQ 64 (77)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555444433
No 193
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=21.71 E-value=45 Score=31.74 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=32.3
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1302 15 TEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR 61 (225)
Q Consensus 15 ~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ER 61 (225)
...++..|..|..+++....-|..-...++-++.|+.++.+.|..+|
T Consensus 441 ~~ki~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~~g~~R 487 (500)
T 3lpx_A 441 HDKILSEYKALLDLIAELMHILATPARLMEVICEELVAIRDEFGDER 487 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44566677777777777777776666666677777777777775443
No 194
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.67 E-value=3.1e+02 Score=21.90 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=22.0
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKL 36 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkL 36 (225)
|..++.+...-+..++..-+.+..||+..|--|
T Consensus 63 L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL 95 (154)
T 2ocy_A 63 LREDIAKENELRTKAEEEADKLNKEVEDLTASL 95 (154)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556667777777788888777655
No 195
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=21.07 E-value=2.4e+02 Score=25.52 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=24.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 40 YSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDL 75 (225)
Q Consensus 40 ~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~rel 75 (225)
...|+.++.|+..++.+|++|.-.|+.....+.+-|
T Consensus 55 I~aLk~lQ~E~~~le~ef~eEv~~LE~KY~kl~qPL 90 (359)
T 3fs3_A 55 LKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPI 90 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 455666777777777777777777776666555544
No 196
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=21.02 E-value=2.4e+02 Score=21.12 Aligned_cols=28 Identities=11% Similarity=0.330 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1302 31 AKNKKLQKIYSKYEEVKQDIQDIMDEFN 58 (225)
Q Consensus 31 ~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~ 58 (225)
....+.+.||+++..+..|-=|+...+.
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDlE~kv~ 73 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDLQEKFK 73 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3566777888888888777777766553
No 197
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=21.00 E-value=58 Score=18.51 Aligned_cols=12 Identities=33% Similarity=0.592 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHH
Q psy1302 32 KNKKLQKIYSKY 43 (225)
Q Consensus 32 KtkkLkKl~~kl 43 (225)
-++|.|||+.|+
T Consensus 6 frkkfkklfkkl 17 (27)
T 2ket_A 6 FRKKFKKLFKKL 17 (27)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 367888888876
No 198
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=20.87 E-value=48 Score=31.64 Aligned_cols=6 Identities=17% Similarity=0.340 Sum_probs=2.4
Q ss_pred HHHhhc
Q psy1302 17 EIRGNY 22 (225)
Q Consensus 17 ~le~~y 22 (225)
.+.+.|
T Consensus 428 ~L~~~f 433 (514)
T 2inr_A 428 NLIEVY 433 (514)
T ss_dssp HHHTTS
T ss_pred HHHHhc
Confidence 333444
No 199
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=20.70 E-value=1.9e+02 Score=18.97 Aligned_cols=37 Identities=5% Similarity=0.220 Sum_probs=24.6
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy1302 17 EIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDI 53 (225)
Q Consensus 17 ~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dl 53 (225)
++...-.+|...-+..+.-|+....++..++.+++++
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455565556666777777777777777777765
No 200
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=20.46 E-value=2e+02 Score=26.57 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=48.7
Q ss_pred HHhhcCCHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Q psy1302 18 IRGNYSTLEQ----EVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK-LRKLIIEN 84 (225)
Q Consensus 18 le~~yssLQe----Eve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk-Lk~lIId~ 84 (225)
++++..+|.. -++.....+++-...|+.++.++..|+.+|.++.-+|+.-...+-+-|= -...||.-
T Consensus 70 ~~~~l~~l~~~~~~~i~sLp~~v~~rI~aLk~lQ~e~~~le~ef~~ev~eLE~Ky~~~~~PLy~KR~eII~G 141 (417)
T 2ayu_A 70 IQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISG 141 (417)
T ss_dssp CCSTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455555544 4455566777778889999999999999999999999988888877653 23345543
No 201
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=20.43 E-value=2.8e+02 Score=22.34 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=39.6
Q ss_pred HHHhHhhHHHHH---hhcCCHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302 8 LDKKEESTEEIR---GNYSTLEQEVQAKNKKLQKIYSKYEEVK---QDIQDIMDEFNRDRRDLEQSQDELLK 73 (225)
Q Consensus 8 le~~Eee~~~le---~~yssLQeEve~KtkkLkKl~~kl~~~k---~Ei~Dlq~E~~~ERedll~tir~l~r 73 (225)
+++.++-+..++ .+|.|.+.-++..++||..+..+|.++- -+...++.+.+.-|-|+.+.-+.+.+
T Consensus 54 l~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~k 125 (158)
T 3tul_A 54 LGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDK 125 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555 8999999999999999988888776653 22333334444444444444444433
No 202
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=20.37 E-value=2.4e+02 Score=20.12 Aligned_cols=25 Identities=12% Similarity=0.315 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q psy1302 39 IYSKYEEVKQDIQDIMDEFNRDRRD 63 (225)
Q Consensus 39 l~~kl~~~k~Ei~Dlq~E~~~ERed 63 (225)
|..+++.++..+.+-+++..+-+.+
T Consensus 25 Le~~v~~le~~Le~s~~~q~~~~~E 49 (79)
T 3cvf_A 25 LEHQLRAMERSLEEARAERERARAE 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433333
No 203
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=20.34 E-value=2.2e+02 Score=19.54 Aligned_cols=17 Identities=41% Similarity=0.683 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1302 58 NRDRRDLEQSQDELLKD 74 (225)
Q Consensus 58 ~~ERedll~tir~l~re 74 (225)
++-|-+|+..+|.+.++
T Consensus 34 qraRk~LE~~vrk~~k~ 50 (61)
T 3l4f_A 34 QRARKDLEKLVRKVLKN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34455555555555444
No 204
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=20.28 E-value=2.8e+02 Score=20.88 Aligned_cols=49 Identities=12% Similarity=0.245 Sum_probs=31.0
Q ss_pred HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy1302 4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQD 52 (225)
Q Consensus 4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~D 52 (225)
++++|....++..++....+.|...|+...+.=.=.|.||+.++-=.++
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe 57 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHT 57 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666666665555566676666544443
No 205
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=20.24 E-value=1.3e+02 Score=26.86 Aligned_cols=17 Identities=18% Similarity=0.108 Sum_probs=8.4
Q ss_pred cCCCCCCCCCChhHHHH
Q psy1302 121 RLVASPQLRRPTTLKAR 137 (225)
Q Consensus 121 RP~sa~g~kRP~s~~a~ 137 (225)
|--..+...|.-.+|-.
T Consensus 120 R~dGsv~F~R~W~~Yk~ 136 (323)
T 1lwu_B 120 RVDGSSNFARDWNTYKA 136 (323)
T ss_dssp ESSSCSCCCCCHHHHHH
T ss_pred eeccccccccCHHHHhh
Confidence 43333444566555554
No 206
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=20.19 E-value=2.5e+02 Score=25.56 Aligned_cols=52 Identities=13% Similarity=0.255 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q psy1302 27 QEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN----RDRRDLEQSQDELLKDLKLR 78 (225)
Q Consensus 27 eEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~----~ERedll~tir~l~relkLk 78 (225)
+++-..-.+.+++..++.+++++.+.+..+.. .+.+.|....+++..+++-.
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~ 83 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRL 83 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555555555554443 23445555555555555433
No 207
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=20.01 E-value=4.9e+02 Score=23.49 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=7.7
Q ss_pred HHHHHhHhhHHHHHhh
Q psy1302 6 QELDKKEESTEEIRGN 21 (225)
Q Consensus 6 qele~~Eee~~~le~~ 21 (225)
.+++..++...+++..
T Consensus 3 ~~l~~~~~r~~el~~~ 18 (354)
T 3d5a_X 3 DKLDRLEEEYRELEAL 18 (354)
T ss_dssp HHHHHHTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444445555555543
Done!