RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1302
(225 letters)
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens)
[TaxId: 9606]}
Length = 222
Score = 30.3 bits (68), Expect = 0.12
Identities = 12/78 (15%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 10 KKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQD 69
K+E G T E+E Q + + ++ ++ + + + + + + +EQ +
Sbjct: 9 SKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNE-------QASEEILKVEQKYN 61
Query: 70 ELLKDLKLRKLIIENFIP 87
+L + ++ + IP
Sbjct: 62 KLRQPFFQKRSELIAKIP 79
>d1prta_ d.166.1.1 (A:) Pertussis toxin, S1 subunit {Bordetella
pertussis [TaxId: 520]}
Length = 234
Score = 28.4 bits (63), Expect = 0.64
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 86 IPIEELKRLEQRLVYDEESSQWNIVPETNPFYIQKRLVASPQLRRPT 132
IP E + R R+ ++ + + +N Y+ ++ A+P
Sbjct: 135 IPPENI-RRVTRVYHNGITGETTTTEYSNARYVSQQTRANPNPYTSR 180
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 27.9 bits (61), Expect = 1.00
Identities = 7/88 (7%), Positives = 36/88 (40%)
Query: 3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62
++ + + + ++ + + +Q ++ K+L+ ++E ++ F +
Sbjct: 101 DLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDA 160
Query: 63 DLEQSQDELLKDLKLRKLIIENFIPIEE 90
D+ ++ ++ K + ++ + +
Sbjct: 161 DINVTKADVEKARQQAQIRHQMAEDSKA 188
>d1nu9c1 a.8.6.1 (C:1-145) Staphylocoagulase {Staphylococcus aureus
[TaxId: 1280]}
Length = 145
Score = 26.8 bits (59), Expect = 1.4
Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 8 LDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIY---------SKYEEVKQDIQDIMDEFN 58
L++K+ EE + Y ++E K++ +Y E+ + ++ + +F
Sbjct: 74 LERKKVQYEEYKKLYKKYKEENPTSKVKMKTFDQYTIEDLTMREYNELTESLKSAVKDFE 133
Query: 59 RDRRDLEQSQ 68
+D +E
Sbjct: 134 KDVEIIENQH 143
>d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase,
PFOR, domain I {Desulfovibrio africanus [TaxId: 873]}
Length = 257
Score = 26.5 bits (58), Expect = 2.4
Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 18 IRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNR 59
+RG + Q + + Y +V + + M +
Sbjct: 214 VRGTAQNPDIYFQGR----EAANPYYLKVPGIVAEYMQKVAS 251
>d1y0na_ d.291.1.1 (A:) Hypothetical UPF0270 protein PA3463
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 78
Score = 25.0 bits (55), Expect = 2.7
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 91 LKRLEQRLVYDEESSQWNIVP 111
L+R E +++D ES Q ++
Sbjct: 47 LRRGEAVILFDPESQQCQLML 67
>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
Length = 967
Score = 26.5 bits (58), Expect = 3.1
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 13/112 (11%)
Query: 18 IRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKL 77
IR Y TL ++ EEV + I++I+ + + D+ + E ++
Sbjct: 626 IRAVYDTLSNKLGRNPAD----IFHLEEVFKVIEEIVSVLVQQKIDVRKYFTESMRSGSF 681
Query: 78 RKLIIENFIPIEELKRLEQ--RLVYDEESSQWN-------IVPETNPFYIQK 120
K +NF+ +RL ++ + +N I+P T+ FYI K
Sbjct: 682 SKPRWDNFLRRPVAQRLPNLYSVIMTQADHVYNYMTQLTHIIPITDCFYIVK 733
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 94
Score = 24.4 bits (53), Expect = 5.3
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 17 EIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRD 60
E + N++ +E A + I+S +E KQ + + +
Sbjct: 2 EQQWNFAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGS 45
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice
(Oryza sativa) [TaxId: 4530]}
Length = 220
Score = 25.6 bits (55), Expect = 5.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 176 KVAPSILSVLQAALQDEAD 194
K+APS+LS A L EAD
Sbjct: 3 KIAPSMLSSDFANLAAEAD 21
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 114
Score = 24.6 bits (53), Expect = 5.9
Identities = 9/84 (10%), Positives = 27/84 (32%)
Query: 1 MIEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRD 60
M E+ + + + E+ E + + K+ ++ +++ + N
Sbjct: 25 MEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYT 84
Query: 61 RRDLEQSQDELLKDLKLRKLIIEN 84
+ + LL + +E
Sbjct: 85 MEHIRVGWELLLTTIARTINEVET 108
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 25.7 bits (56), Expect = 6.2
Identities = 8/47 (17%), Positives = 22/47 (46%)
Query: 16 EEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62
E++ Y L ++ + L E ++++++ + ++F RR
Sbjct: 443 EKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRR 489
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
Length = 169
Score = 24.8 bits (54), Expect = 7.1
Identities = 7/20 (35%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 25 LEQEVQAKNKKLQKI-YSKY 43
+++EV K ++L++I Y +Y
Sbjct: 146 MKREVLEKAQRLEQIGYKEY 165
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB
{Bacillus caldotenax [TaxId: 1395]}
Length = 413
Score = 25.1 bits (54), Expect = 8.3
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 60 DRRDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEE 103
+ + + ++L+ R + + E +RLEQR YD E
Sbjct: 251 REEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLE 294
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 25.1 bits (54), Expect = 8.7
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 34 KKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPIEELKR 93
K Y+K EE++ I + + +E ++E +L++ K E +++L +
Sbjct: 23 KNYGMEYAKIEEIENITNRIKE----TQEFIELLREEGENELEIEKYEKE----LDQLYQ 74
Query: 94 LEQRLVYDEESSQWNI 109
L+ E S + +
Sbjct: 75 ELLFLLSPEASDKAIV 90
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.132 0.365
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 816,889
Number of extensions: 39507
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 51
Length of query: 225
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,281,736
Effective search space: 183288248
Effective search space used: 183288248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.6 bits)