BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13020
(81 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
pdb|2AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
Length = 72
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 3 KRHQVSLEQKNANIRFNPIITNEETLRISIEDMGFDARL 41
K +VSL N + ++P++T+ ETLR +IEDMGFDA L
Sbjct: 32 KSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATL 70
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 47 EATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
E +DGM C SCV+ IE I +KPGV +++VS
Sbjct: 4 ETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVS 37
>pdb|1KVI|A Chain A, Solution Structure Of The Reduced Form Of The First
Heavy Metal Binding Motif Of The Menkes Protein
pdb|1KVJ|A Chain A, Solution Structure Of The Cu(I) Bound Form Of The First
Heavy Metal Binding Motif Of The Menkes Protein
Length = 79
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARL 41
+VSLE+KNA I ++P + +TL+ +I+DMGFDA +
Sbjct: 40 KVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVI 75
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 46 DEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
+ T +V+GM C SCV IE IG+ GV +KVS
Sbjct: 8 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVS 42
>pdb|2K1R|A Chain A, The Solution Nmr Structure Of The Complex Between Mnk1
And Hah1 Mediated By Cu(I)
Length = 73
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARL 41
+VSLE+KNA I ++P + +TL+ +I+DMGFDA +
Sbjct: 36 KVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVI 71
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 46 DEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
+ T +V+GM C SCV IE IG+ GV +KVS
Sbjct: 4 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVS 38
>pdb|3CJK|B Chain B, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
Length = 75
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDA 39
+VSLE+KNA I ++P + +TL+ +I+DMGFDA
Sbjct: 34 KVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDA 67
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 46 DEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
+ T +V+GM C SCV IE IG+ GV +KVS
Sbjct: 2 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVS 36
>pdb|2ROP|A Chain A, Solution Structure Of Domains 3 And 4 Of Human Atp7b
Length = 202
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 7 VSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPS 43
VSL + A + +NP + + E LR +IEDMGF+A + S
Sbjct: 155 VSLAEGTATVLYNPAVISPEELRAAIEDMGFEASVVS 191
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 30/105 (28%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDM---GFDARLP-------------------- 42
QVSLE K A ++++P T+ L+ +IE + F LP
Sbjct: 52 QVSLENKTAQVKYDPSCTSPVALQRAIEALPPGNFKVSLPDGAEGSGTDHRSSSSHSPGS 111
Query: 43 -------STNDEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
T + GM C SCV IE I + GV + VS
Sbjct: 112 PPRNQVQGTCSTTLIAIAGMTCASCVHSIEGMISQLEGVQQISVS 156
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 52 VDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
+DGM C+SCV IE IG+ GV +++VS
Sbjct: 26 IDGMHCKSCVLNIEENIGQLLGVQSIQVS 54
>pdb|2QIF|A Chain A, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|2QIF|B Chain B, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|3I9Z|A Chain A, Crystal Structure Of A Metallochaperone With A
Trinuclear Cu(I) Cluster
Length = 69
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 49 TFTVDGMKCQSCVKKIEATIGEKPGVIAVKV 79
T V+GM CQ CVK +E ++GE GV AV V
Sbjct: 5 TLQVEGMSCQHCVKAVETSVGELDGVSAVHV 35
>pdb|1P8G|A Chain A, The Solution Structure Of Apo Copz From Bacillus
Subtilis
pdb|1K0V|A Chain A, Copper Trafficking: The Solution Structure Of Bacillus
Subtilis Copz
Length = 73
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 49 TFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
T V+GM CQ CVK +E ++GE GV AV V+
Sbjct: 5 TLQVEGMSCQHCVKAVETSVGELDGVSAVHVN 36
>pdb|2EW9|A Chain A, Solution Structure Of Apowln5-6
Length = 149
Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 7 VSLEQKNANIRFNPIITNEETLRISIEDMGFDARL----PSTNDEATFTVDGMKCQSCVK 62
V+L A I+++P + + I+D+GF+A + ++ T+ GM C SCV
Sbjct: 37 VALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAVMEDYAGSDGNIELTITGMTCASCVH 96
Query: 63 KIEATIGEKPGVIAVKVS 80
IE+ + G+ V+
Sbjct: 97 NIESKLTRTNGITYASVA 114
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 52 VDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
+ GM C SCV IE + ++ GV++V V+
Sbjct: 10 IKGMTCASCVSNIERNLQKEAGVLSVLVA 38
>pdb|2G9O|A Chain A, Solution Structure Of The Apo Form Of The Third Metal-
Binding Domain Of Atp7a Protein (Menkes Disease
Protein)
pdb|2GA7|A Chain A, Solution Structure Of The Copper(I) Form Of The Third
Metal- Binding Domain Of Atp7a Protein (Menkes Disease
Protein)
Length = 90
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 45 NDE-ATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
ND ATF +DGM C+SCV IE+T+ V ++ VS
Sbjct: 1 NDSTATFIIDGMHCKSCVSNIESTLSALQYVSSIVVS 37
>pdb|2RML|A Chain A, Solution Structure Of The N-Terminal Soluble Domains Of
Bacillus Subtilis Copa
Length = 147
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 7 VSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPSTNDEATFTVDGMKCQSCVKKIEA 66
V+L + +N+ ++P T ++ IE +G+ ++A F ++GM C +C +IE
Sbjct: 39 VNLATETSNVIYDPAETGTAAIQEKIEKLGYHV----VTEKAEFDIEGMTCAACANRIEK 94
Query: 67 TIGEKPGV 74
+ + GV
Sbjct: 95 RLNKIEGV 102
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 43 STNDEATFTVDGMKCQSCVKKIEATIGEKPGV 74
S E V GM C +C +IE + PGV
Sbjct: 3 SEQKEIAMQVSGMTCAACAARIEKGLKRMPGV 34
>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
P- Type Atpase Copa From Bacillus Subtilis
Length = 151
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 7 VSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPSTNDEATFTVDGMKCQSCVKKIEA 66
V+L + N+ ++P T ++ IE +G+ ++A F ++GM C +C +IE
Sbjct: 39 VNLATETVNVIYDPAETGTAAIQEKIEKLGYHV----VTEKAEFDIEGMTCAACANRIEK 94
Query: 67 TIGEKPGV 74
+ + GV
Sbjct: 95 RLNKIEGV 102
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 43 STNDEATFTVDGMKCQSCVKKIEATIGEKPGV 74
S E V GM C +C +IE + PGV
Sbjct: 3 SEQKEIAMQVSGMTCAACAARIEKGLKRMPGV 34
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 33.5 bits (75), Expect = 0.029, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 47 EATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
E T V GM C CVK IE +G GV V+V+
Sbjct: 3 ERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVN 36
>pdb|2L3M|A Chain A, Solution Structure Of The Putative Copper-Ion-Binding
Protein From Bacillus Anthracis Str. Ames
Length = 71
Score = 32.0 bits (71), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 46 DEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKV 79
++ T V+GM C CV IE+++ E GV VKV
Sbjct: 5 EQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKV 38
>pdb|1Q8L|A Chain A, Second Metal Binding Domain Of The Menkes Atpase
Length = 84
Score = 32.0 bits (71), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 52 VDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
V+GM C SC IE IG+ GV +KVS
Sbjct: 15 VEGMTCHSCTSTIEGKIGKLQGVQRIKVS 43
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 3 KRHQVSLEQKNANIRFNPIITNEETLRISIEDMGFDA 39
+R +VSL+ + A I + P + + E ++ IE MGF A
Sbjct: 38 QRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPA 74
>pdb|1S6O|A Chain A, Solution Structure And Backbone Dynamics Of The Apo-Form
Of The Second Metal-Binding Domain Of The Menkes
Protein Atp7a
pdb|1S6U|A Chain A, Solution Structure And Backbone Dynamics Of The Cu(I)
Form Of The Second Metal-Binding Domain Of The Menkes
Protein Atp7a
Length = 76
Score = 32.0 bits (71), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 52 VDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
V+GM C SC IE IG+ GV +KVS
Sbjct: 9 VEGMTCHSCTSTIEGKIGKLQGVQRIKVS 37
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 3 KRHQVSLEQKNANIRFNPIITNEETLRISIEDMGFDA 39
+R +VSL+ + A I + P + + E ++ IE MGF A
Sbjct: 32 QRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPA 68
>pdb|1YG0|A Chain A, Solution Structure Of Apo-Copp From Helicobacter Pylori
Length = 66
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 48 ATFTVDGMKCQSCVKKIEATIGEKPGV 74
ATF V + C CV KIE +GE GV
Sbjct: 3 ATFQVPSITCNHCVDKIEKFVGEIEGV 29
>pdb|1YJU|A Chain A, Solution Structure Of The Apo Form Of The Sixth Soluble
Domain Of Menkes Protein
pdb|1YJV|A Chain A, Solution Structure Of The Cu(i) Form Of The Sixth
Soluble Domain Of Menkes Protein
Length = 75
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 50 FTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
V GM C SCV KIE+++ + G++ V+
Sbjct: 8 LVVRGMTCASCVHKIESSLTKHRGILYCSVA 38
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARL 41
V+L A+I+++P I + +IE +GF+A L
Sbjct: 36 SVALATNKAHIKYDPEIIGPRDIIHTIESLGFEASL 71
>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
Coppper(I) Atpase Pacs In Its Apo Form
Length = 73
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 50 FTVDGMKCQSCVKKIEATIGEKPGVIAVKV 79
++GM+C +C IE I + PGV + +V
Sbjct: 7 LQLEGMRCAACASSIERAIAKVPGVQSCQV 36
>pdb|1YJR|A Chain A, Solution Structure Of The Apo Form Of The Sixth Soluble
Domain A69p Mutant Of Menkes Protein
pdb|1YJT|A Chain A, Solution Structure Of The Cu(I) Form Of The Sixth
Soluble Domain A69p Mutant Of Menkes Protein
Length = 75
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 50 FTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
V GM C SCV KIE+++ + G++ V+
Sbjct: 8 LVVRGMTCASCVHKIESSLTKHRGILYCSVA 38
>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
Length = 71
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 50 FTVDGMKCQSCVKKIEATIGEKPGVIAVKV 79
++GM+C +C IE I + PGV + +V
Sbjct: 7 LQLEGMRCAACASSIERAIAKVPGVQSCQV 36
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 50 FTVDGMKCQSCVKKIEATIGEKPGVIAVKV 79
++GM C SC IE I + PGV + +V
Sbjct: 6 LQLEGMDCTSCASSIERAIAKVPGVQSCQV 35
>pdb|1MWY|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Apo-Form
pdb|1MWZ|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Zn(Ii)-Form
Length = 73
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 49 TFTVDGMKCQSCVKKIEATIGEKPGVIAVKV 79
++ V GM C +C +K+E + + GV V+V
Sbjct: 6 SWKVSGMDCAACARKVENAVRQLAGVNQVQV 36
>pdb|1CPZ|A Chain A, Copper Chaperone Of Enterococcus Hirae (Apo-Form)
Length = 68
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 50 FTVDGMKCQSCVKKIEATIGEKPG 73
F+V GM C CV +IE +G G
Sbjct: 4 FSVKGMSCNHCVARIEEAVGRISG 27
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 43 STND--EATFTVDGMKCQSCVKKIEATIGEKPGV 74
+TND EAT+ + M C++CV I+A + PG+
Sbjct: 2 TTNDTYEATYAIP-MHCENCVNDIKACLKNVPGI 34
>pdb|1OPZ|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ3|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ6|A Chain A, Solution Structure Of Copper-s46v Copa From Bacillus
Subtilis
Length = 76
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 43 STNDEATFTVDGMKCQSCVKKIEATIGEKPGV 74
S E V GM C +C +IE + PGV
Sbjct: 3 SEQKEIAMQVSGMTCAACAARIEKGLKRMPGV 34
>pdb|1KQK|A Chain A, Solution Structure Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis In The Cu(I)loaded State
Length = 80
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 46 DEATFTVDGMKCQSCVKKIEATIGEKPGV 74
++A F ++GM C +C +IE + + GV
Sbjct: 3 EKAEFDIEGMTCAACANRIEKRLNKIEGV 31
>pdb|2VOY|A Chain A, Cryoem Model Of Copa, The Copper Transporting Atpase
From Archaeoglobus Fulgidus
pdb|1JWW|A Chain A, Nmr Characterization Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis
Length = 80
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 46 DEATFTVDGMKCQSCVKKIEATIGEKPGV 74
++A F ++GM C +C +IE + + GV
Sbjct: 3 EKAEFDIEGMTCAACANRIEKRLNKIEGV 31
>pdb|1Y3K|A Chain A, Solution Structure Of The Apo Form Of The Fifth Domain
Of Menkes Protein
pdb|1Y3J|A Chain A, Solution Structure Of The Copper(I) Form Of The Fifth
Domain Of Menkes Protein
Length = 77
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 52 VDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
V GM C SCV IE + + G+ ++ V+
Sbjct: 9 VTGMTCASCVANIERNLRREEGIYSILVA 37
>pdb|2AJ0|A Chain A, Solution Structure Of Apocada
pdb|2AJ1|A Chain A, Solution Structure Of Apocada
Length = 71
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 46 DEATFTVDGMKCQSCVKKIEATIGEKPGV 74
++ + VDG+ C +C K E + E GV
Sbjct: 3 EKTVYRVDGLSCTNCAAKFERNVKEIEGV 31
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 50 FTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
V+GM C CV + + + PGV V+VS
Sbjct: 4 LKVEGMTCNHCVMAVTKALKKVPGVEKVEVS 34
>pdb|1QUP|A Chain A, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
pdb|1QUP|B Chain B, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
Length = 222
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 43 STND--EATFTVDGMKCQSCVKKIEATIGEKPGV 74
+TND EAT+ + C++CV I+A + PG+
Sbjct: 1 TTNDTYEATYAIP-XHCENCVNDIKACLKNVPGI 33
>pdb|2OFH|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 52 VDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
V GM C SC KIE ++ GV V+
Sbjct: 14 VGGMDCTSCKLKIEGSLERLKGVAEASVT 42
>pdb|2OFG|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 52 VDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
V GM C SC KIE ++ GV V+
Sbjct: 9 VGGMDCTSCKLKIEGSLERLKGVAEASVT 37
>pdb|2KT2|A Chain A, Structure Of Nmera, The N-Terminal Hma Domain Of Tn501
Mercuric Reductase
pdb|2KT3|A Chain A, Structure Of Hg-Nmera, Hg(Ii) Complex Of The N-Terminal
Domain Of Tn501 Mercuric Reductase
Length = 69
Score = 25.0 bits (53), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 52 VDGMKCQSCVKKIEATIGEKPGVIAVKVSH 81
+ GM C SC ++ + + PGV + VS+
Sbjct: 6 ITGMTCDSCAAHVKEALEKVPGVQSALVSY 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,177,690
Number of Sequences: 62578
Number of extensions: 71818
Number of successful extensions: 172
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 59
length of query: 81
length of database: 14,973,337
effective HSP length: 50
effective length of query: 31
effective length of database: 11,844,437
effective search space: 367177547
effective search space used: 367177547
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)