RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13020
(81 letters)
>gnl|CDD|238219 cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in
a number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases
and copper chaperones. HMA domain contains two cysteine
residues that are important in binding and transfer of
metal ions, such as copper, cadmium, cobalt and zinc.
In the case of copper, stoichiometry of binding is one
Cu+ ion per binding domain. Repeats of the HMA domain
in copper chaperone has been associated with
Menkes/Wilson disease due to binding of multiple copper
ions.
Length = 63
Score = 44.5 bits (106), Expect = 5e-08
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 49 TFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
+V+GM C CV KIE + + PGV +V+V
Sbjct: 1 ELSVEGMTCAGCVSKIEKALEKLPGVESVEVD 32
Score = 29.9 bits (68), Expect = 0.029
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDAR 40
+V LE A + ++P ++ EE L IED G+ AR
Sbjct: 30 EVDLETGKATVEYDPEVSPEELLEA-IEDAGYKAR 63
>gnl|CDD|215902 pfam00403, HMA, Heavy-metal-associated domain.
Length = 62
Score = 41.4 bits (98), Expect = 9e-07
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 49 TFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
T V GM C C KK+E + + PGV +V V
Sbjct: 1 TLRVPGMTCAGCAKKVEKALSKLPGVSSVSVD 32
>gnl|CDD|188014 TIGR00003, TIGR00003, copper ion binding protein. This model
describes an apparently copper-specific subfamily of
the metal-binding domain HMA (pfam00403). Closely
related sequences outside this model include mercury
resistance proteins and repeated domains of eukaryotic
eukaryotic copper transport proteins. Members of this
family are strictly prokaryotic. The model identifies
both small proteins consisting of just this domain and
N-terminal regions of cation (probably copper)
transporting ATPases [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 66
Score = 41.4 bits (97), Expect = 1e-06
Identities = 18/32 (56%), Positives = 19/32 (59%)
Query: 49 TFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
TF V GM C CV KIE +GE GV VKV
Sbjct: 3 TFQVKGMSCNHCVDKIEKFVGEIEGVSKVKVQ 34
>gnl|CDD|225328 COG2608, CopZ, Copper chaperone [Inorganic ion transport and
metabolism].
Length = 71
Score = 39.7 bits (93), Expect = 6e-06
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 47 EATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
+ T V+GM C CVK +E + E GV +V V
Sbjct: 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVD 36
Score = 23.9 bits (52), Expect = 5.9
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDA 39
V LE+ A + F+ + E + +IED G+
Sbjct: 34 DVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKV 67
>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport
and metabolism].
Length = 713
Score = 40.7 bits (96), Expect = 2e-05
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 47 EATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVSH 81
E + +V+GM C +C +IEA + + PGV +V+
Sbjct: 3 ETSLSVEGMTCAACASRIEA-LNKLPGVEEARVNL 36
>gnl|CDD|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase;
Provisional.
Length = 741
Score = 38.4 bits (90), Expect = 1e-04
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 38 DARLPSTNDEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKV 79
+ + ++ V GM C SC +K+E + + GV V+V
Sbjct: 45 EDTPLVSGTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQV 86
>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional.
Length = 561
Score = 32.8 bits (75), Expect = 0.009
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 49 TFTVDGMKCQSCVKKIEATIGEKPGVIAVKVSH 81
T + GM C SC ++ + + PGV + VS+
Sbjct: 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSY 35
>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional.
Length = 834
Score = 31.6 bits (72), Expect = 0.021
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 39 ARLPSTNDEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKV 79
A +D + GM C SCV +++ + PGV +V
Sbjct: 92 AATADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARV 132
Score = 28.6 bits (64), Expect = 0.28
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 50 FTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
T+DG+ C CVK+++ ++ ++P V VS
Sbjct: 7 LTLDGLSCGHCVKRVKESLEQRPDVEQADVS 37
>gnl|CDD|215516 PLN02957, PLN02957, copper, zinc superoxide dismutase.
Length = 238
Score = 30.5 bits (69), Expect = 0.060
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 50 FTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
F VD MKC+ CV ++ + GV AV+V
Sbjct: 10 FMVD-MKCEGCVAAVKNKLETLEGVKAVEVD 39
>gnl|CDD|225322 COG2602, COG2602, Beta-lactamase class D [Defense mechanisms].
Length = 254
Score = 27.7 bits (62), Expect = 0.55
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 2 RKRHQVSL-EQKNANIRFNPIITNEETLRISIEDMGFDARLPSTNDEATFTVDGMK 56
K S+ ++ A RF+P T +I++ +G DA + S D DG
Sbjct: 37 DKAMGYSIYNEERAKQRFSP----ASTFKIALSLIGLDAGVLSDEDTPVLLWDGKI 88
>gnl|CDD|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases. This
family of enzymes catalyzes the cyclization of the
triterpenes squalene or 2-3-oxidosqualene to a variety
of products including hopene , lanosterol ,
cycloartenol, amyrin, lupeol and isomultiflorenol.
Length = 621
Score = 27.4 bits (61), Expect = 0.85
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 39 ARLPSTNDEATFTVDGMKCQSCVKKI 64
R+ D +DGMK Q ++
Sbjct: 274 QRID---DYLWLQLDGMKMQGTGSQV 296
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 27.0 bits (60), Expect = 1.2
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 15 NIRFNPIITNEETLRISIEDMGFDARLPSTNDEA 48
I+FN ITNEE L + F +L N+EA
Sbjct: 312 AIKFNSFITNEEALILQRLKKKFGLKL--INEEA 343
>gnl|CDD|236271 PRK08474, PRK08474, F0F1 ATP synthase subunit delta; Validated.
Length = 176
Score = 25.3 bits (56), Expect = 3.9
Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 10/54 (18%)
Query: 6 QVSLEQK-NANIRFNPIITNEETLRISIEDMGFDARLPSTNDEATFTVDGMKCQ 58
+ L +K NA I+ ++ + +++ ++D+G E +F+ D +K Q
Sbjct: 123 EEKLSKKFNAKIKLKQKKSDYDGIKVEVDDLGV---------EVSFSKDRLKNQ 167
>gnl|CDD|193573 cd09849, M20_Acy1L2_like_2, M20 Peptidase Aminoacylase 1-like
protein 2, amidohydrolase family. Peptidase M20 family,
Aminoacylase 1-like protein 2 (ACY1L2;
amidohydrolase)-like subfamily. This group contains many
uncharacterized proteins predicted as amidohydrolases,
including gene products of abgA and abgB that catalyze
the cleavage of p-aminobenzoyl-glutamate, a folate
catabolite in Escherichia coli , to p-aminobenzoate and
glutamate. p-Aminobenzoyl-glutamate utilization is
catalyzed by the abg region gene product, AbgT.
Aminoacylase 1 (ACY1) proteins are a class of zinc
binding homodimeric enzymes involved in hydrolysis of
N-acetylated proteins. N-terminal acetylation of
proteins is a widespread and highly conserved process
that is involved in the protection and stability of
proteins. Several types of aminoacylases can be
distinguished on the basis of substrate specificity.
ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino
acids (except L-aspartate), especially
N-acetyl-methionine and acetyl-glutamate into L-amino
acids and an acyl group. However, ACY1 can also catalyze
the reverse reaction, the synthesis of acetylated amino
acids. ACY1 may also play a role in xenobiotic
bioactivation as well as the inter-organ processing of
amino acid-conjugated xenobiotic derivatives
(S-substituted-N-acetyl-L-cysteine).
Length = 388
Score = 24.9 bits (55), Expect = 5.0
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 11/44 (25%)
Query: 16 IRFNPIITNEETLRISIED---MGFDARLPSTNDEATFTVDGMK 56
+R +PIIT L + M R T+D +K
Sbjct: 236 VRVHPIITKGGDLVNVVPAEVTMESYVR--------AATIDAIK 271
>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 24.9 bits (55), Expect = 5.4
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 9 LEQKNAN--IRFNPIITNEETLRISIEDMGFD 38
LE+K N ++ NP + E +R ++ MGFD
Sbjct: 233 LEEKGLNTFVKLNPTLLGYERVREILDKMGFD 264
>gnl|CDD|193549 cd05674, M20_yscS, M20 Peptidase, carboxypeptidase yscS. Peptidase
M20 family, yscS (GlyX-carboxypeptidase, CPS1,
carboxypeptidase S, carboxypeptidase a, carboxypeptidase
yscS, glycine carboxypeptidase)-like subfamily. This
group mostly contains proteins that have been
uncharacterized to date, but also includes vacuolar
proteins involved in nitrogen metabolism which are
essential for use of certain peptides that are sole
nitrogen sources. YscS releases a C-terminal amino acid
from a peptide that has glycine as the penultimate
residue. It is synthesized as one polypeptide chain
precursor which yields two active precursor molecules
after carbohydrate modification in the secretory
pathway. The proteolytically unprocessed forms are
associated with the membrane, whereas the mature forms
of the enzyme are soluble. Enzymes in this subfamily
may also cleave intracellularly generated peptides in
order to recycle amino acids for protein synthesis.
Length = 441
Score = 24.4 bits (54), Expect = 6.8
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 9/31 (29%)
Query: 15 NI-RFNPIITNEETL--------RISIEDMG 36
NI RF+PI E L RIS+++
Sbjct: 400 NIYRFSPIRLTGEDLARIHGVNERISVDNYL 430
>gnl|CDD|240658 cd12181, ceo_syn, N(5)-(carboxyethyl)ornithine synthase.
N(5)-(carboxyethyl)ornithine synthase (ceo_syn)
catalyzes the NADP-dependent conversion of
N5-(L-1-carboxyethyl)-L-ornithine to L-ornithine +
pyruvate. Ornithine plays a key role in the urea cycle,
which in mammals is used in arginine biosynthesis, and
is a precursor in polyamine synthesis. ceo_syn is
related to the NAD-dependent L-alanine dehydrogenases.
Like formate dehydrogenase and related enzymes, ceo_syn
is comprised of 2 domains connected by a long alpha
helical stretch, each resembling a Rossmann fold
NAD-binding domain. The NAD-binding domain is inserted
within the linear sequence of the more divergent
catalytic domain. These ceo_syn proteins have a
partially conserved NAD-binding motif and active site
residues that are characteristic of related enzymes such
as Saccharopine Dehydrogenase.
Length = 295
Score = 24.5 bits (54), Expect = 6.9
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 10/45 (22%)
Query: 20 PIITNEE-------TLRISI---EDMGFDARLPSTNDEATFTVDG 54
II E+ L I + E MG + P+T D+ + VDG
Sbjct: 214 HIIYEEDLKRLKPGALIIDVSCDEGMGIEFAKPTTFDDPIYKVDG 258
>gnl|CDD|131107 TIGR02052, MerP, mercuric transport protein periplasmic
component. This model represents the periplasmic
mercury (II) binding protein of the bacterial mercury
detoxification system which passes mercuric ion to the
MerT transporter for subsequent reduction to Hg(0) by
the mercuric reductase MerA. MerP contains a
distinctive GMTCXXC motif associated with metal
binding. MerP is related to a larger family of metal
binding proteins (pfam00403) [Cellular processes,
Detoxification].
Length = 92
Score = 24.2 bits (52), Expect = 7.3
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 49 TFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
T V GM C +C +E + + GV +V+
Sbjct: 26 TLEVPGMTCVACPITVETALQKVDGVSKAEVT 57
>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit.
Members of this protein family are YgfK, predicted to be
one subunit of a three-subunit, molybdopterin-containing
selenate reductase. This enzyme is found, typically, in
genomic regions associated with xanthine dehydrogenase
homologs predicted to belong to the selenium-dependent
molybdenum hydroxylases (SDMH). Therefore, the selenate
reductase is suggested to play a role in furnishing
selenide for SelD, the selenophosphate synthase.
Length = 1012
Score = 24.4 bits (53), Expect = 8.6
Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 9 LEQKNAN--IRFNPIITNEETLRISIEDMGFD 38
LE+K + ++ NP + + +R ++++MGFD
Sbjct: 231 LEEKGLHTFVKLNPTLLGYKFVRDTMDEMGFD 262
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.131 0.367
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,922,373
Number of extensions: 299386
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 26
Length of query: 81
Length of database: 10,937,602
Length adjustment: 50
Effective length of query: 31
Effective length of database: 8,719,902
Effective search space: 270316962
Effective search space used: 270316962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)