RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13020
(81 letters)
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like
fold, structural genomics, structural proteomics in
europe, spine, hydrolase; NMR {Homo sapiens}
Length = 149
Score = 73.5 bits (181), Expect = 1e-18
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPSTND----EATFTVDGMKCQSCV 61
V+L A I+++P + + I+D+GF+A + T+ GM C SCV
Sbjct: 36 LVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAVMEDYAGSDGNIELTITGMTCASCV 95
Query: 62 KKIEATIGEKPGVIAVKVS 80
IE+ + G+ V+
Sbjct: 96 HNIESKLTRTNGITYASVA 114
Score = 45.4 bits (108), Expect = 9e-08
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 47 EATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
+ + GM C SCV IE + ++ GV++V V+
Sbjct: 5 KCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVA 38
Score = 36.9 bits (86), Expect = 1e-04
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARL 41
V+L A ++F+P I + IE++GF A L
Sbjct: 112 SVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASL 147
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase,
water-soluble region, beta-alpha-beta- beta-alpha-beta
fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1
PDB: 2rml_A
Length = 151
Score = 69.0 bits (169), Expect = 6e-17
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 3 KRHQVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPSTNDEATFTVDGMKCQSCVK 62
V+L + N+ ++P T ++ IE +G+ ++A F ++GM C +C
Sbjct: 35 TDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHVVT----EKAEFDIEGMTCAACAN 90
Query: 63 KIEATIGEKPGVIAVKVS 80
+IE + + GV V+
Sbjct: 91 RIEKRLNKIEGVANAPVN 108
Score = 44.7 bits (106), Expect = 1e-07
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 43 STNDEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
S E V GM C +C +IE + PGV V+
Sbjct: 3 SEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVN 40
Score = 38.6 bits (90), Expect = 4e-05
Identities = 7/43 (16%), Positives = 19/43 (44%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPSTNDEA 48
V+ + + +NP + L+ +++ +G+ +L D
Sbjct: 106 PVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGEQDSI 148
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility,
protein-protein interaction, alternative splicing,
ATP-binding, copper transport cytoplasm; NMR {Homo
sapiens}
Length = 202
Score = 58.9 bits (142), Expect = 1e-12
Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 30/105 (28%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDM---GFDARLPS------------------- 43
QVSLE K A ++++P T+ L+ +IE + F LP
Sbjct: 52 QVSLENKTAQVKYDPSCTSPVALQRAIEALPPGNFKVSLPDGAEGSGTDHRSSSSHSPGS 111
Query: 44 --------TNDEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
T + GM C SCV IE I + GV + VS
Sbjct: 112 PPRNQVQGTCSTTLIAIAGMTCASCVHSIEGMISQLEGVQQISVS 156
Score = 53.5 bits (128), Expect = 1e-10
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 31 SIEDMGFDARLPSTNDEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
+ E +G T +DGM C+SCV IE IG+ GV +++VS
Sbjct: 8 NSETLGHQGSHVVT---LQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVS 54
Score = 43.1 bits (101), Expect = 1e-06
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPSTNDEA 48
VSL + A + +NP + + E LR +IEDMGF+A + S +
Sbjct: 154 SVSLAEGTATVLYNPAVISPEELRAAIEDMGFEASVVSESCST 196
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure,
structural genomics, structural proteomics in europe,
spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Length = 90
Score = 49.8 bits (119), Expect = 5e-10
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 45 NDEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
+ ATF +DGM C+SCV IE+T+ V ++ VS
Sbjct: 2 DSTATFIIDGMHCKSCVSNIESTLSALQYVSSIVVS 37
Score = 40.1 bits (94), Expect = 4e-06
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPSTNDEA 48
VSLE ++A + +N E+LR +IE + S E
Sbjct: 35 VVSLENRSAIVVYNASSVTPESLRKAIEAVSPGLYRVSITSEV 77
>1yg0_A COP associated protein; open-faced beta-sandwich, missing
C-terminal beta-sheet, Met transport; NMR {Helicobacter
pylori}
Length = 66
Score = 47.2 bits (113), Expect = 3e-09
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 47 EATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVSH 81
+ATF V + C CV KIE +GE GV + VS
Sbjct: 2 KATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSV 36
Score = 28.4 bits (64), Expect = 0.074
Identities = 8/34 (23%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDA 39
VS+E+K+ + F+ T ++ ++ ++ D G +
Sbjct: 33 DVSVEKKSVVVEFDAPAT-QDLIKEALLDAGQEV 65
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain,
hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB:
2aw0_A
Length = 72
Score = 46.9 bits (112), Expect = 6e-09
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 47 EATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
E +DGM C SCV+ IE I +KPGV +++VS
Sbjct: 4 ETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVS 37
Score = 42.6 bits (101), Expect = 3e-07
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLP 42
+VSL N + ++P++T+ ETLR +IEDMGFDA L
Sbjct: 35 RVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATLS 71
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR
{Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Length = 79
Score = 46.6 bits (111), Expect = 7e-09
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 42 PSTNDEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
+ T +V+GM C SCV IE IG+ GV +KVS
Sbjct: 4 SMGVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVS 42
Score = 45.4 bits (108), Expect = 2e-08
Identities = 18/40 (45%), Positives = 30/40 (75%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPSTN 45
+VSLE+KNA I ++P + +TL+ +I+DMGFDA + + +
Sbjct: 40 KVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHNPD 79
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo
sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Length = 84
Score = 46.6 bits (111), Expect = 9e-09
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 42 PSTNDEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
+ V+GM C SC IE IG+ GV +KVS
Sbjct: 5 QAGEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVS 43
Score = 40.4 bits (95), Expect = 2e-06
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPSTN 45
+VSL+ + A I + P + + E ++ IE MGF A +
Sbjct: 41 KVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVKKQP 80
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal
homeostasis, chaperone, ION transport, metal- binding,
alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Length = 75
Score = 46.1 bits (110), Expect = 1e-08
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 46 DEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
+ T +V+GM C SCV IE IG+ GV +KVS
Sbjct: 2 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVS 36
Score = 42.7 bits (101), Expect = 2e-07
Identities = 18/39 (46%), Positives = 29/39 (74%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPST 44
+VSLE+KNA I ++P + +TL+ +I+DMGFDA + +
Sbjct: 34 KVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHNI 72
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A
{Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A
1p8g_A
Length = 69
Score = 46.1 bits (110), Expect = 1e-08
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 47 EATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
+ T V+GM CQ CVK +E ++GE GV AV V+
Sbjct: 3 QKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVN 36
Score = 36.1 bits (84), Expect = 6e-05
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDA 39
V+LE ++ F+ + + + +IED G+D
Sbjct: 34 HVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDV 67
>2l3m_A Copper-ION-binding protein; structural genomics, center for
structural genomics of infec diseases, csgid, metal
binding protein; NMR {Bacillus anthracis}
Length = 71
Score = 45.3 bits (108), Expect = 2e-08
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 46 DEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
++ T V+GM C CV IE+++ E GV VKV
Sbjct: 5 EQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQ 39
Score = 37.6 bits (88), Expect = 2e-05
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDAR 40
+V L + + + + + + IED G+D +
Sbjct: 37 KVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGYDVQ 71
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR
{Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A
2ggp_B
Length = 72
Score = 45.3 bits (108), Expect = 2e-08
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 47 EATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
E V GM C +C I + GV +S
Sbjct: 3 EVILAVHGMTCSACTNTINTQLRALKGVTKCDIS 36
Score = 37.2 bits (87), Expect = 3e-05
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPSTN 45
+SL + ++ +T + ++ IED GFD + +
Sbjct: 34 DISLVTNECQVTYDNEVTADS-IKEIIEDCGFDCEILRDS 72
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding,
metal selectivity, ferredoxin fold, ATP-binding,
hydrolase; NMR {Arabidopsis thaliana}
Length = 95
Score = 44.8 bits (106), Expect = 5e-08
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 47 EATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
++ F V G+ C S V IE + GV V
Sbjct: 17 KSYFDVLGICCTSEVPIIENILKSLDGVKEYSVI 50
Score = 38.2 bits (89), Expect = 2e-05
Identities = 2/43 (4%), Positives = 17/43 (39%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPSTNDEA 48
V + + + + ++ + + ++ + +A + + +
Sbjct: 48 SVIVPSRTVIVVHDSLLISPFQIAKALNEARLEANVRVNGETS 90
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene
regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Length = 68
Score = 43.0 bits (102), Expect = 2e-07
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 49 TFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
F+V GM C CV +IE +G GV VKV
Sbjct: 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQ 34
Score = 36.9 bits (86), Expect = 4e-05
Identities = 7/36 (19%), Positives = 20/36 (55%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARL 41
+V L+++ A ++F+ + +I ++G+ A +
Sbjct: 32 KVQLKKEKAVVKFDEANVQATEICQAINELGYQAEV 67
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like
fold, ATP- binding, ethylene signaling pathway,
hydrolase, ION transport; 1.70A {Arabidopsis thaliana}
Length = 74
Score = 43.1 bits (102), Expect = 2e-07
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 47 EATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
+ V GM C +C +EA + GV V+
Sbjct: 3 KIQVGVTGMTCAACSNSVEAALMNVNGVFKASVA 36
Score = 37.7 bits (88), Expect = 2e-05
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPST 44
V+L Q A++ F+P + EE ++ IED GF+A + +
Sbjct: 34 SVALLQNRADVVFDPNLVKEEDIKEEIEDAGFEAEILAE 72
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain
ATU1203, ontario centre for ST proteomics, structural
genomics; NMR {Agrobacterium tumefaciens str}
Length = 85
Score = 42.9 bits (101), Expect = 3e-07
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 41 LPSTNDEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKV 79
L +F V+ M C C I+ I + AV
Sbjct: 17 LYFQGAGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHA 55
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha-
beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1
PDB: 1mwz_A
Length = 73
Score = 42.4 bits (100), Expect = 3e-07
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 44 TNDEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
+ ++ V GM C +C +K+E + + GV V+V
Sbjct: 1 SGTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVL 37
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal
binding protein, perisplasm, structural genomics; 2.00A
{Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A
1afj_A 2hqi_A
Length = 72
Score = 42.3 bits (100), Expect = 3e-07
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 47 EATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
T +V GM C +C ++ I + GV V V+
Sbjct: 4 TVTLSVPGMTCSACPITVKKAISKVEGVSKVDVT 37
Score = 37.7 bits (88), Expect = 2e-05
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLP 42
V+ E + A + F+ T+ + L + D G+ + +
Sbjct: 35 DVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSVK 71
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB:
2rog_A
Length = 66
Score = 41.9 bits (99), Expect = 3e-07
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 49 TFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
V+GM C CV + + + PGV V+VS
Sbjct: 3 KLKVEGMTCNHCVMAVTKALKKVPGVEKVEVS 34
Score = 28.4 bits (64), Expect = 0.072
Identities = 9/38 (23%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPS 43
+VSLE+ A + + + L ++E+ G+ A + +
Sbjct: 32 EVSLEKGEALVEGT---ADPKALVQAVEEEGYKAEVLA 66
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab
fold, hydrolase; NMR {Bacillus subtilis} SCOP:
d.58.17.1 PDB: 1oq3_A 1oq6_A
Length = 76
Score = 42.3 bits (100), Expect = 3e-07
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 43 STNDEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
S E V GM C +C +IE + PGV V+
Sbjct: 3 SEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVN 40
Score = 30.4 bits (69), Expect = 0.013
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPS 43
V+L + N+ ++P T ++ IE +G+ +
Sbjct: 38 NVNLATETVNVIYDPAETGTAAIQEKIEKLGYHVVIEG 75
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones,
hydrolase; NMR {Synechocystis SP}
Length = 71
Score = 41.9 bits (99), Expect = 4e-07
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 47 EATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
V GM+C +C IE + GV V+
Sbjct: 4 TQQMQVGGMRCAACASSIERALERLKGVAEASVT 37
Score = 35.7 bits (83), Expect = 1e-04
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLP 42
V++ + ++P +E T++ I +G+ P
Sbjct: 35 SVTVATGRLTVTYDPKQVSEITIQERIAALGYTLAEP 71
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 44.4 bits (106), Expect = 4e-07
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 47 EATFTVDGMKCQSCVKKIEATIGEKPGVIAVKV 79
E T V GM C CVK IE +G GV V+V
Sbjct: 3 ERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRV 35
Score = 31.0 bits (71), Expect = 0.024
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPSTNDEA 48
+V+L + A IRF+ + ET++ IED+G+ A
Sbjct: 34 RVNLATETAFIRFDEKRIDFETIKRVIEDLGYGVVDEQAAVSA 76
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold,
beta-alpha-beta-BETA-alpha-beta structure, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
1y3k_A
Length = 77
Score = 41.9 bits (99), Expect = 4e-07
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 45 NDEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
+ + V GM C SCV IE + + G+ ++ V+
Sbjct: 2 SSKCYIQVTGMTCASCVANIERNLRREEGIYSILVA 37
Score = 37.7 bits (88), Expect = 2e-05
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPSTNDE 47
V+L A +R+NP + + I ++GF A + +
Sbjct: 35 LVALMAGKAEVRYNPAVIQPPMIAEFIRELGFGATVIENIEG 76
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein
interaction, copper(I), metal homeostasis, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
1yjt_A 1yju_A 1yjv_A
Length = 75
Score = 41.5 bits (98), Expect = 7e-07
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 44 TNDEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
+ V GM C SCV KIE+++ + G++ V+
Sbjct: 2 GDGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVA 38
Score = 35.0 bits (81), Expect = 2e-04
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPST 44
V+L A+I+++P I + +IE +GF+ L
Sbjct: 36 SVALATNKAHIKYDPEIIGPRDIIHTIESLGFEPSLVKI 74
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold,
beta-alpha-beta-BETA-alpha-beta, struc genomics,
hydrolase, membrane protein; NMR {Synechocystis SP}
PDB: 2ofh_X
Length = 111
Score = 42.1 bits (99), Expect = 8e-07
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 42 PSTNDEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
S V GM C SC KIE ++ GV V+
Sbjct: 4 SSPLKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVT 42
Score = 37.5 bits (87), Expect = 6e-05
Identities = 10/58 (17%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPSTNDEATFTVDGMKCQSCVKK 63
V++ + ++P +E T++ I +G+ P +++ T++G K ++
Sbjct: 40 SVTVATGRLTVTYDPKQVSEITIQERIAALGYTLAEP----KSSVTLNGHKHPHSHRE 93
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist
metal-binding, oxidoreductase; NMR {Pseudomonas
aeruginosa} PDB: 2kt3_A
Length = 69
Score = 40.4 bits (95), Expect = 2e-06
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 49 TFTVDGMKCQSCVKKIEATIGEKPGVIAVKVSH 81
+ GM C SC ++ + + PGV + VS+
Sbjct: 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSY 35
Score = 28.4 bits (64), Expect = 0.077
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPS 43
VS + A + P + + L ++ +G+ A L
Sbjct: 32 LVSYPKGTAQLAIVPGTS-PDALTAAVAGLGYKATLAD 68
>1jww_A Potential copper-transporting ATPase;
beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR
{Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Length = 80
Score = 40.8 bits (96), Expect = 2e-06
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 45 NDEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKV 79
++A F ++GM C +C +IE + + GV V
Sbjct: 2 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPV 36
Score = 30.4 bits (69), Expect = 0.017
Identities = 7/44 (15%), Positives = 19/44 (43%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPSTNDEAT 49
V+ + + +NP + L+ +++ +G+ +L D
Sbjct: 35 PVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGEQDSIE 78
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold,
beta-alpha-beta-BETA-alpha-beta, metal binding protein,
hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A
Length = 71
Score = 40.5 bits (95), Expect = 2e-06
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 46 DEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
++ + VDG+ C +C K E + E GV V+
Sbjct: 3 EKTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVN 37
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase,
Cu(I)-binding, trafficking; 1.80A {Synechocystis SP}
PDB: 2gcf_A
Length = 71
Score = 40.0 bits (94), Expect = 2e-06
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 46 DEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
++GM+C +C IE I + PGV + +V+
Sbjct: 3 QTINLQLEGMRCAACASSIERAIAKVPGVQSCQVN 37
Score = 24.6 bits (54), Expect = 1.8
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLP 42
QV+ + A + ++ T + L ++E G+ AR+
Sbjct: 35 QVNFALEQAVVSYHGETTPQI-LTDAVERAGYHARVL 70
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis,
chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB:
2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Length = 64
Score = 39.2 bits (92), Expect = 4e-06
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 49 TFTVDGMKCQSCVKKIEATIGEKPGVIAVKV 79
TV + C++C + + + + V+V
Sbjct: 4 QLTVPTIACEACAEAVTKAVQNEDAQATVQV 34
>3fry_A Probable copper-exporting P-type ATPase A; transport protein,
metal binding domain, domain SWAP, ATP-BI cell
membrane, copper transport; HET: CIT; 2.00A
{Archaeoglobus fulgidus}
Length = 73
Score = 37.0 bits (86), Expect = 3e-05
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 46 DEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
++ + G+ C CV +++ + E+ G KV
Sbjct: 5 EKIVLELSGLSCHHCVARVKKAL-EEAGAKVEKVD 38
Score = 23.1 bits (50), Expect = 9.0
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPST 44
+V L + + + ++E G+ A+L S+
Sbjct: 36 KVDLNEAVVAGNK----EDVDKYIKAVEAAGYQAKLRSS 70
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology,
protein structure initiative, joint for structural
genomics, JCSG; NMR {Thermotoga maritima}
Length = 67
Score = 34.4 bits (79), Expect = 3e-04
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 47 EATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
V + C C +I + E+ GV +VS
Sbjct: 2 RYVLYVPDISCNHCKMRISKAL-EELGVKNYEVS 34
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein
complex, heterodimer, metallochaperone, amyotrophic
lateral sclerosis; 2.90A {Saccharomyces cerevisiae}
SCOP: b.1.8.1 d.58.17.1
Length = 249
Score = 36.3 bits (83), Expect = 4e-04
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 47 EATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
EAT+ + M C++CV I+A + PG+ ++
Sbjct: 8 EATYAIP-MHCENCVNDIKACLKNVPGINSLNFD 40
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 34.8 bits (80), Expect = 5e-04
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 33 EDMGFDARLPSTNDEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
M D+ T F V M CQSCV + ++ GV V+V
Sbjct: 6 SGMASDSGNQGTLCTLEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVH 52
>1qup_A Superoxide dismutase 1 copper chaperone; two domains,
beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A
{Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Length = 222
Score = 35.4 bits (81), Expect = 7e-04
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 47 EATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
EAT+ + M C++CV I+A + PG+ ++
Sbjct: 7 EATYAIP-MHCENCVNDIKACLKNVPGINSLNFD 39
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.003
Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 7/28 (25%)
Query: 58 QSCVKKIEATI-----GEKPGVIAVKVS 80
Q+ +KK++A++ P +A+K +
Sbjct: 20 QA-LKKLQASLKLYADDSAPA-LAIKAT 45
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta,
cisplatin, platinum, chaperone, ION transport,
metal-binding, metal transport; HET: TCE; 1.60A {Homo
sapiens} PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B
1fe0_A* 3iwx_A 3cjk_A
Length = 68
Score = 29.3 bits (66), Expect = 0.040
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 49 TFTVDGMKCQSCVKKIEATIGEKPGV 74
F+VD M C C + + + + GV
Sbjct: 5 EFSVD-MTCGGCAEAVSRVLNKLGGV 29
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury
coordination, metal transport; 1.02A {Saccharomyces
cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A
2ggp_A 3k7r_A
Length = 73
Score = 28.2 bits (63), Expect = 0.091
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 49 TFTVDGMKCQSCVKKIEATIGE-KPGVIAVKVS 80
F V M C C + + + +P V + +S
Sbjct: 8 QFNVV-MTCSGCSGAVNKVLTKLEPDVSKIDIS 39
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding,
metallopeptidase, structural genomics, PSI-2, protein
struc initiative; 2.00A {Haemophilus influenzae} PDB:
3ic1_A
Length = 377
Score = 24.5 bits (54), Expect = 4.4
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 15 NIRFNPIITNEETLRISIEDM----GFDARLP-STNDEATFTVDGMKCQSCVKKIEATIG 69
N+R+ +T +E ++ + +M R+ + + + T G S IE TIG
Sbjct: 256 NLRYCTEVT-DEIIKQKVAEMLEKHNLKYRIEWNLSGKPFLTKPGKLLDSITSAIEETIG 314
Query: 70 EKP 72
P
Sbjct: 315 ITP 317
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics,
unknown function; HET: MSE; 1.90A {Neisseria
meningitidis} SCOP: c.56.5.4 d.58.19.1
Length = 393
Score = 24.2 bits (53), Expect = 6.7
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 15 NIRFNPIITNEETLRISIEDM----GFDARLP-STNDEATFTVDGMKCQSCVKKIEATIG 69
N RF+ T E L+ + + G L S + + T G I T G
Sbjct: 259 NFRFSTEST-EAGLKQRVHAILDKHGVQYDLQWSCSGQPFLTQAGKLTDVARAAIAETCG 317
Query: 70 EKP 72
+
Sbjct: 318 IEA 320
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.367
Gapped
Lambda K H
0.267 0.0824 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,185,154
Number of extensions: 58104
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 71
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.2 bits)