RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13020
(81 letters)
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type
ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}
Length = 72
Score = 43.2 bits (102), Expect = 5e-08
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 43 STNDEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
S E V GM C +C +IE + PGV V+
Sbjct: 3 SEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVN 40
Score = 29.3 bits (66), Expect = 0.013
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDA 39
V+L + N+ ++P T ++ IE +G+
Sbjct: 38 NVNLATETVNVIYDPAETGTAAIQEKIEKLGYHV 71
>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP
{Ralstonia metallidurans CH34 [TaxId: 266264]}
Length = 72
Score = 42.4 bits (100), Expect = 9e-08
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 49 TFTVDGMKCQSCVKKIEATIGEKPGVIAVKVSH 81
T +V GM C +C ++ I + GV V V+
Sbjct: 6 TLSVPGMTCSACPITVKKAISKVEGVSKVDVTF 38
Score = 33.6 bits (77), Expect = 3e-04
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARL 41
V+ E + A + F+ T+ + L + D G+ + +
Sbjct: 35 DVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSV 70
>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis,
CopZ [TaxId: 1423]}
Length = 69
Score = 42.1 bits (99), Expect = 1e-07
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 47 EATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVSH 81
+ T V+GM CQ CVK +E ++GE GV AV V+
Sbjct: 3 QKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNL 37
Score = 30.5 bits (69), Expect = 0.004
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDA 39
V+LE ++ F+ + + + +IED G+D
Sbjct: 34 HVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDV 67
>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 72
Score = 41.6 bits (98), Expect = 2e-07
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 47 EATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVSH 81
E V GM C +C I + GV +S
Sbjct: 3 EVILAVHGMTCSACTNTINTQLRALKGVTKCDISL 37
Score = 30.5 bits (69), Expect = 0.005
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARL 41
+SL + ++ +T ++++ IED GFD +
Sbjct: 34 DISLVTNECQVTYDNEVT-ADSIKEIIEDCGFDCEI 68
>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 73
Score = 41.7 bits (98), Expect = 2e-07
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 49 TFTVDGMKCQSCVKKIEATIGEKPGVIAVKVSH 81
++ V GM C +C +K+E + + GV V+V
Sbjct: 6 SWKVSGMDCAACARKVENAVRQLAGVNQVQVLF 38
Score = 26.3 bits (58), Expect = 0.21
Identities = 4/35 (11%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDAR 40
QV + + + + +++ G+ R
Sbjct: 35 QVLFATEKLVVDADN--DIRAQVESALQKAGYSLR 67
>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 41.7 bits (98), Expect = 2e-07
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 47 EATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVSH 81
E +DGM C SCV+ IE I +KPGV +++VS
Sbjct: 4 ETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSL 38
Score = 34.4 bits (79), Expect = 1e-04
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARL 41
+VSL N + ++P++T+ ETLR +IEDMGFDA L
Sbjct: 35 RVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATL 70
>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating
P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId:
1423]}
Length = 79
Score = 41.4 bits (97), Expect = 3e-07
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 46 DEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVSH 81
++A F ++GM C +C +IE + + GV V+
Sbjct: 2 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNF 37
Score = 33.7 bits (77), Expect = 3e-04
Identities = 7/43 (16%), Positives = 19/43 (44%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPSTNDEA 48
V+ + + +NP + L+ +++ +G+ +L D
Sbjct: 34 PVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGEQDSI 76
>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 41.4 bits (97), Expect = 3e-07
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 46 DEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVSH 81
+ T +V+GM C SCV IE IG+ GV +KVS
Sbjct: 8 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSL 43
Score = 36.3 bits (84), Expect = 3e-05
Identities = 18/40 (45%), Positives = 30/40 (75%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPSTN 45
+VSLE+KNA I ++P + +TL+ +I+DMGFDA + + +
Sbjct: 40 KVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHNPD 79
>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae
[TaxId: 1354]}
Length = 68
Score = 39.8 bits (93), Expect = 1e-06
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 50 FTVDGMKCQSCVKKIEATIGEKPGVIAVKVSH 81
F+V GM C CV +IE +G GV VKV
Sbjct: 4 FSVKGMSCNHCVARIEEAVGRISGVKKVKVQL 35
Score = 34.0 bits (78), Expect = 2e-04
Identities = 8/39 (20%), Positives = 22/39 (56%)
Query: 3 KRHQVSLEQKNANIRFNPIITNEETLRISIEDMGFDARL 41
K+ +V L+++ A ++F+ + +I ++G+ A +
Sbjct: 29 KKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEV 67
>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 39.2 bits (91), Expect = 2e-06
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 42 PSTNDEATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVSH 81
+ V+GM C SC IE IG+ GV +KVS
Sbjct: 5 QAGEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSL 44
Score = 31.1 bits (70), Expect = 0.004
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPS 43
+VSL+ + A I + P + + E ++ IE MGF A +
Sbjct: 41 KVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVKK 78
>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide
dismutase, N-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 72
Score = 35.1 bits (81), Expect = 6e-05
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 43 STND--EATFTVDGMKCQSCVKKIEATIGEKPGVIAVKVS 80
+TND EAT+ + M C++CV I+A + PG+ ++
Sbjct: 1 TTNDTYEATYAIP-MHCENCVNDIKACLKNVPGINSLNFD 39
Score = 24.0 bits (52), Expect = 1.3
Identities = 6/39 (15%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLPST 44
+EQ+ ++ + T+ ++ + G DA +
Sbjct: 37 NFDIEQQIMSVESS---VAPSTIINTLRNCGKDAIIRGA 72
>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc
6803, Scatx1 [TaxId: 1148]}
Length = 64
Score = 32.6 bits (74), Expect = 7e-04
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 49 TFTVDGMKCQSCVKKIEATIGEKPGVIAVKVSH 81
TV + C++C + + + + V+V
Sbjct: 4 QLTVPTIACEACAEAVTKAVQNEDAQATVQVDL 36
>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1)
{Human (Homo sapiens), HAH1 [TaxId: 9606]}
Length = 66
Score = 26.7 bits (59), Expect = 0.12
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 49 TFTVDGMKCQSCVKKIEATIGEKPGVIA 76
F+VD M C C + + + + GV
Sbjct: 4 EFSVD-MTCGGCAEAVSRVLNKLGGVKY 30
Score = 21.7 bits (46), Expect = 8.6
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 6 QVSLEQKNANIRFNPIITNEETLRISIEDMGFDARL 41
+ L K I + +TL +++ G
Sbjct: 31 DIDLPNKKVCIESEH---SMDTLLATLKKTGKTVSY 63
>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 72
Score = 26.3 bits (58), Expect = 0.19
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 49 TFTVDGMKCQSCVKKIEATIGE-KPGVIAVKVS 80
F V M C C + + + +P V + +S
Sbjct: 7 QFNVV-MTCSGCSGAVNKVLTKLEPDVSKIDIS 38
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp.,
strain YM-1 [TaxId: 1409]}
Length = 277
Score = 23.0 bits (48), Expect = 5.5
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 18 FNPIITNEETLRISIEDMGF 37
+N I +E ++I ED G+
Sbjct: 5 WNDQIVKDEEVKIDKEDRGY 24
>d1nuna_ b.42.1.1 (A:) Fibroblast growth factor-10, FGF10 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 139
Score = 22.5 bits (48), Expect = 6.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 51 TVDGMKCQSCVKKIEATIGEKPGVIAVK 78
V G K ++C I + GV+AVK
Sbjct: 29 KVSGTKKENCPYSILEITSVEIGVVAVK 56
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.131 0.367
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 287,171
Number of extensions: 11173
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 28
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)