BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13021
(287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EW9|A Chain A, Solution Structure Of Apowln5-6
Length = 149
Score = 134 bits (337), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 94/138 (68%)
Query: 131 VDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISELGFPA 190
+ GM C SCV IE + ++ G+ SVLVAL+A KAEI+Y ++I P EIA I +LGF A
Sbjct: 10 IKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEA 69
Query: 191 TVIDEAGSGEGELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVT 250
V+++ +G +EL I+GM+CASCV+ IE+ + + GI A VAL T + ++D E+
Sbjct: 70 AVMEDYAGSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEII 129
Query: 251 GPRDVMECIEKLGFTTAL 268
GPRD+++ IE++GF +L
Sbjct: 130 GPRDIIKIIEEIGFHASL 147
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 77/141 (54%), Gaps = 4/141 (2%)
Query: 56 LISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDMG 115
+ I GMTC SCV+ I ++ + GV ++ V+L A I+++P + + I+D+G
Sbjct: 7 FLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLG 66
Query: 116 FDARL----PSTNDEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSK 171
F+A + ++ T+ GM C SCV IE+ + GI VAL +KA +++
Sbjct: 67 FEAAVMEDYAGSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDP 126
Query: 172 DLISPTEIAASISELGFPATV 192
++I P +I I E+GF A++
Sbjct: 127 EIIGPRDIIKIIEEIGFHASL 147
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 45/65 (69%)
Query: 205 LKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKLGF 264
L+I GM+CASCV+ IE +++K AG+ S +VAL + + +YD EV P ++ + I+ LGF
Sbjct: 8 LQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGF 67
Query: 265 TTALL 269
A++
Sbjct: 68 EAAVM 72
>pdb|2ROP|A Chain A, Solution Structure Of Domains 3 And 4 Of Human Atp7b
Length = 202
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 30/175 (17%)
Query: 54 TVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIED 113
T+ + IDGM C+SCV I + I GV +I+VSLE K A ++++P T+ L+ +IE
Sbjct: 21 TLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEA 80
Query: 114 M---GFDARLP---------------------------STNDEATFTVDGMKCQSCVKKI 143
+ F LP T + GM C SCV I
Sbjct: 81 LPPGNFKVSLPDGAEGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAIAGMTCASCVHSI 140
Query: 144 EATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISELGFPATVIDEAGS 198
E I + G+ + V+L A + Y+ +ISP E+ A+I ++GF A+V+ E+ S
Sbjct: 141 EGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEASVVSESCS 195
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 26/165 (15%)
Query: 131 VDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISEL---G 187
+DGM C+SCV IE IG+ G+ S+ V+L A+++Y SP + +I L
Sbjct: 26 IDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEALPPGN 85
Query: 188 FPATVIDEA-GSG-------------------EGELE---LKISGMSCASCVNKIETSVK 224
F ++ D A GSG +G + I+GM+CASCV+ IE +
Sbjct: 86 FKVSLPDGAEGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAIAGMTCASCVHSIEGMIS 145
Query: 225 KLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKLGFTTALL 269
+L G++ V+L Y+ V P ++ IE +GF +++
Sbjct: 146 QLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEASVV 190
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 45/70 (64%)
Query: 53 STVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIE 112
ST LI+I GMTC SCV++I I GV I VSL + A + +NP + + E LR +IE
Sbjct: 122 STTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIE 181
Query: 113 DMGFDARLPS 122
DMGF+A + S
Sbjct: 182 DMGFEASVVS 191
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 193 IDEAGSGEGELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGP 252
+ GS L+L+I GM C SCV IE ++ +L G++S V+L + + +YD T P
Sbjct: 12 LGHQGSHVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSP 71
Query: 253 RDVMECIEKL 262
+ IE L
Sbjct: 72 VALQRAIEAL 81
>pdb|1AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
pdb|2AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
Length = 72
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 48/65 (73%)
Query: 56 LISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDMG 115
+I+IDGMTC SCV +I I KPGV +I+VSL N + ++P++T+ ETLR +IEDMG
Sbjct: 6 VINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMG 65
Query: 116 FDARL 120
FDA L
Sbjct: 66 FDATL 70
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 126 EATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISE 185
E +DGM C SCV+ IE I +KPG+ S+ V+L + + Y L SP + +I +
Sbjct: 4 ETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIED 63
Query: 186 LGFPATVID 194
+GF AT+ D
Sbjct: 64 MGFDATLSD 72
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEK 261
E + I GM+C SCV IE + K G+KS V+L G YD +T P + IE
Sbjct: 4 ETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIED 63
Query: 262 LGFTTAL 268
+GF L
Sbjct: 64 MGFDATL 70
>pdb|1YJU|A Chain A, Solution Structure Of The Apo Form Of The Sixth Soluble
Domain Of Menkes Protein
pdb|1YJV|A Chain A, Solution Structure Of The Cu(i) Form Of The Sixth Soluble
Domain Of Menkes Protein
Length = 75
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 49/71 (69%)
Query: 199 GEGELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMEC 258
G+G LEL + GM+CASCV+KIE+S+ K GI VAL T + +YD E+ GPRD++
Sbjct: 2 GDGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHT 61
Query: 259 IEKLGFTTALL 269
IE LGF +L+
Sbjct: 62 IESLGFEASLV 72
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 129 FTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISELGF 188
V GM C SCV KIE+++ + GI VAL KA I+Y ++I P +I +I LGF
Sbjct: 8 LVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGF 67
Query: 189 PATVI 193
A+++
Sbjct: 68 EASLV 72
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 59 IDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDMGFDA 118
+ GMTC SCV+ I ++ G+ V+L A+I+++P I + +IE +GF+A
Sbjct: 10 VRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEA 69
Query: 119 RL 120
L
Sbjct: 70 SL 71
>pdb|1YJR|A Chain A, Solution Structure Of The Apo Form Of The Sixth Soluble
Domain A69p Mutant Of Menkes Protein
pdb|1YJT|A Chain A, Solution Structure Of The Cu(I) Form Of The Sixth Soluble
Domain A69p Mutant Of Menkes Protein
Length = 75
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 49/71 (69%)
Query: 199 GEGELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMEC 258
G+G LEL + GM+CASCV+KIE+S+ K GI VAL T + +YD E+ GPRD++
Sbjct: 2 GDGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHT 61
Query: 259 IEKLGFTTALL 269
IE LGF +L+
Sbjct: 62 IESLGFEPSLV 72
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 129 FTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISELGF 188
V GM C SCV KIE+++ + GI VAL KA I+Y ++I P +I +I LGF
Sbjct: 8 LVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGF 67
Query: 189 PATVI 193
+++
Sbjct: 68 EPSLV 72
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 59 IDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDMGFDA 118
+ GMTC SCV+ I ++ G+ V+L A+I+++P I + +IE +GF+
Sbjct: 10 VRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEP 69
Query: 119 RL 120
L
Sbjct: 70 SL 71
>pdb|3CJK|B Chain B, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
Length = 75
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 48/67 (71%)
Query: 52 ASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISI 111
++V IS++GMTC SCV TI I GV +IKVSLE+KNA I ++P + +TL+ +I
Sbjct: 1 VNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAI 60
Query: 112 EDMGFDA 118
+DMGFDA
Sbjct: 61 DDMGFDA 67
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 125 DEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASIS 184
+ T +V+GM C SCV IE IG+ G++ + V+L A I Y L +P + +I
Sbjct: 2 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAID 61
Query: 185 ELGFPATVIDEAG 197
++GF A + + G
Sbjct: 62 DMGFDAVIHNIEG 74
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 205 LKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKLGF 264
+ + GM+C SCV IE + K+ G+ V+L + YD ++ P+ + E I+ +GF
Sbjct: 6 ISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGF 65
Query: 265 TTALLN 270
+ N
Sbjct: 66 DAVIHN 71
>pdb|1Y3K|A Chain A, Solution Structure Of The Apo Form Of The Fifth Domain Of
Menkes Protein
pdb|1Y3J|A Chain A, Solution Structure Of The Copper(I) Form Of The Fifth
Domain Of Menkes Protein
Length = 77
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 43/64 (67%)
Query: 131 VDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISELGFPA 190
V GM C SCV IE + + GI S+LVAL+A KAE+RY+ +I P IA I ELGF A
Sbjct: 9 VTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGFGA 68
Query: 191 TVID 194
TVI+
Sbjct: 69 TVIE 72
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 205 LKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKLGF 264
++++GM+CASCV IE ++++ GI S +VAL + + RY+ V P + E I +LGF
Sbjct: 7 IQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGF 66
Query: 265 TTALL 269
++
Sbjct: 67 GATVI 71
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 52 ASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISI 111
+S I + GMTC SCV I +R + G+++I V+L A +R+NP + + I
Sbjct: 2 SSKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFI 61
Query: 112 EDMGFDA 118
++GF A
Sbjct: 62 RELGFGA 68
>pdb|2K1R|A Chain A, The Solution Nmr Structure Of The Complex Between Mnk1 And
Hah1 Mediated By Cu(I)
Length = 73
Score = 68.6 bits (166), Expect = 4e-12, Method: Composition-based stats.
Identities = 35/66 (53%), Positives = 48/66 (72%)
Query: 53 STVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIE 112
++V IS++GMTC SCV TI I GV +IKVSLE+KNA I ++P + +TL+ +I+
Sbjct: 4 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAID 63
Query: 113 DMGFDA 118
DMGFDA
Sbjct: 64 DMGFDA 69
Score = 48.5 bits (114), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 125 DEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASIS 184
+ T +V+GM C SCV IE IG+ G++ + V+L A I Y L +P + +I
Sbjct: 4 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAID 63
Query: 185 ELGFPATV 192
++GF A +
Sbjct: 64 DMGFDAVI 71
Score = 44.7 bits (104), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 199 GEGELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMEC 258
G + + + GM+C SCV IE + K+ G+ V+L + YD ++ P+ + E
Sbjct: 2 GVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEA 61
Query: 259 IEKLGFTTALLN 270
I+ +GF + N
Sbjct: 62 IDDMGFDAVIHN 73
>pdb|1KVI|A Chain A, Solution Structure Of The Reduced Form Of The First Heavy
Metal Binding Motif Of The Menkes Protein
pdb|1KVJ|A Chain A, Solution Structure Of The Cu(I) Bound Form Of The First
Heavy Metal Binding Motif Of The Menkes Protein
Length = 79
Score = 68.6 bits (166), Expect = 4e-12, Method: Composition-based stats.
Identities = 35/66 (53%), Positives = 48/66 (72%)
Query: 53 STVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIE 112
++V IS++GMTC SCV TI I GV +IKVSLE+KNA I ++P + +TL+ +I+
Sbjct: 8 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAID 67
Query: 113 DMGFDA 118
DMGFDA
Sbjct: 68 DMGFDA 73
Score = 48.5 bits (114), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 125 DEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASIS 184
+ T +V+GM C SCV IE IG+ G++ + V+L A I Y L +P + +I
Sbjct: 8 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAID 67
Query: 185 ELGFPATV 192
++GF A +
Sbjct: 68 DMGFDAVI 75
Score = 44.7 bits (104), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 199 GEGELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMEC 258
G + + + GM+C SCV IE + K+ G+ V+L + YD ++ P+ + E
Sbjct: 6 GVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEA 65
Query: 259 IEKLGFTTALLN 270
I+ +GF + N
Sbjct: 66 IDDMGFDAVIHN 77
>pdb|2RML|A Chain A, Solution Structure Of The N-Terminal Soluble Domains Of
Bacillus Subtilis Copa
Length = 147
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 8/152 (5%)
Query: 122 STNDEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAA 181
S E V GM C +C +IE + PG+ V L + + Y I
Sbjct: 3 SEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETSNVIYDPAETGTAAIQE 62
Query: 182 SISELGFPATVIDEAGSGEGELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRG 241
I +LG+ V+ E E I GM+CA+C N+IE + K+ G+ +A V +
Sbjct: 63 KIEKLGY--HVVTEKA------EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETV 114
Query: 242 KFRYDLEVTGPRDVMECIEKLGFTTALLNSKD 273
Y+ + D+ E ++KLG+ L +D
Sbjct: 115 TVEYNPKEASVSDLKEAVDKLGYKLKLKGEQD 146
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 67/134 (50%), Gaps = 4/134 (2%)
Query: 55 VLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDM 114
+ + + GMTC +C I ++ PGV + V+L + +N+ ++P T ++ IE +
Sbjct: 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETSNVIYDPAETGTAAIQEKIEKL 67
Query: 115 GFDARLPSTNDEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLI 174
G+ ++A F ++GM C +C +IE + + G+ + V + Y+
Sbjct: 68 GYHV----VTEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEA 123
Query: 175 SPTEIAASISELGF 188
S +++ ++ +LG+
Sbjct: 124 SVSDLKEAVDKLGY 137
>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
P- Type Atpase Copa From Bacillus Subtilis
Length = 151
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 8/152 (5%)
Query: 122 STNDEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAA 181
S E V GM C +C +IE + PG+ V L + Y I
Sbjct: 3 SEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQE 62
Query: 182 SISELGFPATVIDEAGSGEGELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRG 241
I +LG+ V+ E E I GM+CA+C N+IE + K+ G+ +A V +
Sbjct: 63 KIEKLGY--HVVTEKA------EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETV 114
Query: 242 KFRYDLEVTGPRDVMECIEKLGFTTALLNSKD 273
Y+ + D+ E ++KLG+ L +D
Sbjct: 115 TVEYNPKEASVSDLKEAVDKLGYKLKLKGEQD 146
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 71/147 (48%), Gaps = 4/147 (2%)
Query: 55 VLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDM 114
+ + + GMTC +C I ++ PGV + V+L + N+ ++P T ++ IE +
Sbjct: 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKL 67
Query: 115 GFDARLPSTNDEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLI 174
G+ ++A F ++GM C +C +IE + + G+ + V + Y+
Sbjct: 68 GYHV----VTEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEA 123
Query: 175 SPTEIAASISELGFPATVIDEAGSGEG 201
S +++ ++ +LG+ + E S EG
Sbjct: 124 SVSDLKEAVDKLGYKLKLKGEQDSIEG 150
>pdb|1P8G|A Chain A, The Solution Structure Of Apo Copz From Bacillus Subtilis
pdb|1K0V|A Chain A, Copper Trafficking: The Solution Structure Of Bacillus
Subtilis Copz
Length = 73
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 125 DEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASIS 184
++ T V+GM CQ CVK +E ++GE G+++V V L A K ++ + D +S +IA +I
Sbjct: 2 EQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIE 61
Query: 185 ELGFPATVID 194
+ G+ I+
Sbjct: 62 DQGYDVAKIE 71
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 205 LKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKLGF 264
L++ GMSC CV +ETSV +L G+ + V L + +D + +D+ + IE G+
Sbjct: 6 LQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGY 65
Query: 265 TTALLNSK 272
A + +
Sbjct: 66 DVAKIEGR 73
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%)
Query: 57 ISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDMGF 116
+ ++GM+CQ CV + ++ GV + V+LE ++ F+ + + + +IED G+
Sbjct: 6 LQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGY 65
Query: 117 D 117
D
Sbjct: 66 D 66
>pdb|2QIF|A Chain A, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|2QIF|B Chain B, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|3I9Z|A Chain A, Crystal Structure Of A Metallochaperone With A Trinuclear
Cu(I) Cluster
Length = 69
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 41/64 (64%)
Query: 125 DEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASIS 184
++ T V+GM CQ CVK +E ++GE G+++V V L A K ++ + D +S +IA +I
Sbjct: 2 EQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIE 61
Query: 185 ELGF 188
+ G+
Sbjct: 62 DQGY 65
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 205 LKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKLGF 264
L++ GMSC CV +ETSV +L G+ + V L + +D + +D+ + IE G+
Sbjct: 6 LQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGY 65
Query: 265 TTA 267
A
Sbjct: 66 DVA 68
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%)
Query: 57 ISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDMGF 116
+ ++GM+CQ CV + ++ GV + V+LE ++ F+ + + + +IED G+
Sbjct: 6 LQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGY 65
Query: 117 D 117
D
Sbjct: 66 D 66
>pdb|1Q8L|A Chain A, Second Metal Binding Domain Of The Menkes Atpase
Length = 84
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 49 AEMASTVL-ISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETL 107
A+ VL + ++GMTC SC +TI I GV IKVSL+ + A I + P + + E +
Sbjct: 4 AQAGEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEM 63
Query: 108 RISIEDMGFDA 118
+ IE MGF A
Sbjct: 64 KKQIEAMGFPA 74
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%)
Query: 131 VDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISELGFPA 190
V+GM C SC IE IG+ G+ + V+L +A I Y LIS E+ I +GFPA
Sbjct: 15 VEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPA 74
Query: 191 TV 192
V
Sbjct: 75 FV 76
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 196 AGSGEGELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDV 255
A +GE L++K+ GM+C SC + IE + KL G++ V+L Q Y + ++
Sbjct: 4 AQAGEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEM 63
Query: 256 MECIEKLGF 264
+ IE +GF
Sbjct: 64 KKQIEAMGF 72
>pdb|1S6O|A Chain A, Solution Structure And Backbone Dynamics Of The Apo-Form
Of The Second Metal-Binding Domain Of The Menkes Protein
Atp7a
pdb|1S6U|A Chain A, Solution Structure And Backbone Dynamics Of The Cu(I) Form
Of The Second Metal-Binding Domain Of The Menkes Protein
Atp7a
Length = 76
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 57 ISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDMGF 116
+ ++GMTC SC +TI I GV IKVSL+ + A I + P + + E ++ IE MGF
Sbjct: 7 MKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGF 66
Query: 117 DA 118
A
Sbjct: 67 PA 68
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%)
Query: 131 VDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISELGFPA 190
V+GM C SC IE IG+ G+ + V+L +A I Y LIS E+ I +GFPA
Sbjct: 9 VEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPA 68
Query: 191 TV 192
V
Sbjct: 69 FV 70
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 199 GEGELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMEC 258
GE L++K+ GM+C SC + IE + KL G++ V+L Q Y + ++ +
Sbjct: 1 GEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQ 60
Query: 259 IEKLGF 264
IE +GF
Sbjct: 61 IEAMGF 66
>pdb|1OPZ|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ3|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ6|A Chain A, Solution Structure Of Copper-s46v Copa From Bacillus
Subtilis
Length = 76
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%)
Query: 198 SGEGELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVME 257
S + E+ +++SGM+CA+C +IE +K++ G+ A V L T+ YD TG + E
Sbjct: 3 SEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQE 62
Query: 258 CIEKLGFTTAL 268
IEKLG+ +
Sbjct: 63 KIEKLGYHVVI 73
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 55 VLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDM 114
+ + + GMTC +C I ++ PGV + V+L + N+ ++P T ++ IE +
Sbjct: 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKL 67
Query: 115 GFD 117
G+
Sbjct: 68 GYH 70
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 26/71 (36%)
Query: 122 STNDEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAA 181
S E V GM C +C +IE + PG+ V L + Y I
Sbjct: 3 SEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQE 62
Query: 182 SISELGFPATV 192
I +LG+ +
Sbjct: 63 KIEKLGYHVVI 73
>pdb|2L3M|A Chain A, Solution Structure Of The Putative Copper-Ion-Binding
Protein From Bacillus Anthracis Str. Ames
Length = 71
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEK 261
+L L++ GMSC CVN IE+SVK+L G++ V L + D V +D++ IE
Sbjct: 6 QLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIED 65
Query: 262 LGF 264
G+
Sbjct: 66 QGY 68
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 57 ISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDMGF 116
+ ++GM+C CVN I +++ GV +KV L + + + + + + IED G+
Sbjct: 9 LQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGY 68
Query: 117 DAR 119
D +
Sbjct: 69 DVQ 71
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 125 DEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASIS 184
++ T V+GM C CV IE+++ E G+ V V L E+ +++ +I A I
Sbjct: 5 EQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIE 64
Query: 185 ELGF 188
+ G+
Sbjct: 65 DQGY 68
>pdb|1KQK|A Chain A, Solution Structure Of The N-Terminal Domain Of A Potential
Copper-Translocating P-Type Atpase From Bacillus
Subtilis In The Cu(I)loaded State
Length = 80
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 204 ELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKLG 263
E I GM+CA+C N+IE + K+ G+ +A V + Y+ + D+ E ++KLG
Sbjct: 6 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLG 65
Query: 264 FTTALLNSKD 273
+ L +D
Sbjct: 66 YKLKLKGEQD 75
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 34/75 (45%)
Query: 51 MASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRIS 110
M I+GMTC +C N I + GV N V+ + + +NP + L+ +
Sbjct: 1 MTEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEA 60
Query: 111 IEDMGFDARLPSTND 125
++ +G+ +L D
Sbjct: 61 VDKLGYKLKLKGEQD 75
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 38/77 (49%)
Query: 125 DEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASIS 184
++A F ++GM C +C +IE + + G+ + V + Y+ S +++ ++
Sbjct: 3 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVD 62
Query: 185 ELGFPATVIDEAGSGEG 201
+LG+ + E S EG
Sbjct: 63 KLGYKLKLKGEQDSIEG 79
>pdb|2VOY|A Chain A, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
pdb|1JWW|A Chain A, Nmr Characterization Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis
Length = 80
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 204 ELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKLG 263
E I GM+CA+C N+IE + K+ G+ +A V + Y+ + D+ E ++KLG
Sbjct: 6 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLG 65
Query: 264 FTTALLNSKD 273
+ L +D
Sbjct: 66 YKLKLKGEQD 75
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 57 ISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDMGF 116
I+GMTC +C N I + GV N V+ + + +NP + L+ +++ +G+
Sbjct: 7 FDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGY 66
Query: 117 DARLPSTND 125
+L D
Sbjct: 67 KLKLKGEQD 75
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 38/77 (49%)
Query: 125 DEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASIS 184
++A F ++GM C +C +IE + + G+ + V + Y+ S +++ ++
Sbjct: 3 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVD 62
Query: 185 ELGFPATVIDEAGSGEG 201
+LG+ + E S EG
Sbjct: 63 KLGYKLKLKGEQDSIEG 79
>pdb|2GGP|B Chain B, Solution Structure Of The Atx1-Cu(I)-Ccc2a Complex
pdb|1FVQ|A Chain A, Solution Structure Of The Yeast Copper Transporter Domain
Ccc2a In The Apo And Cu(I) Loaded States
Length = 72
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEK 261
E+ L + GM+C++C N I T ++ L G+ ++L T + YD EVT + E IE
Sbjct: 3 EVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADS-IKEIIED 61
Query: 262 LGFTTALL 269
GF +L
Sbjct: 62 CGFDCEIL 69
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 52 ASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISI 111
A V++++ GMTC +C NTI +RA GV +SL + ++ +T + I I
Sbjct: 1 AREVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEI-I 59
Query: 112 EDMGFDARL 120
ED GFD +
Sbjct: 60 EDCGFDCEI 68
>pdb|1FVS|A Chain A, Solution Structure Of The Yeast Copper Transporter Domain
Ccc2a In The Apo And Cu(I) Load States
Length = 72
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEK 261
E+ L + GM+C++C N I T ++ L G+ ++L T + YD EVT + E IE
Sbjct: 3 EVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADS-IKEIIED 61
Query: 262 LGFTTALL 269
GF +L
Sbjct: 62 CGFDCEIL 69
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 55 VLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDM 114
V++++ GMTC +C NTI +RA GV +SL + ++ +T + I IED
Sbjct: 4 VILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEI-IEDC 62
Query: 115 GFDARL 120
GFD +
Sbjct: 63 GFDCEI 68
>pdb|2G9O|A Chain A, Solution Structure Of The Apo Form Of The Third Metal-
Binding Domain Of Atp7a Protein (Menkes Disease Protein)
pdb|2GA7|A Chain A, Solution Structure Of The Copper(I) Form Of The Third
Metal- Binding Domain Of Atp7a Protein (Menkes Disease
Protein)
Length = 90
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 53 STVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIE 112
ST IDGM C+SCV+ I T+ A V +I VSLE ++A + +N E+LR +IE
Sbjct: 3 STATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIE 62
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 124 NDE-ATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAAS 182
ND ATF +DGM C+SCV IE+T+ ++S++V+L A + Y+ ++P + +
Sbjct: 1 NDSTATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKA 60
Query: 183 ISEL--GFPATVIDEAGSGEGELE 204
I + G I EG LE
Sbjct: 61 IEAVSPGLYRVSITSEVEIEGRLE 84
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 207 ISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKLG 263
I GM C SCV+ IE+++ L + S VV+L + Y+ P + + IE +
Sbjct: 9 IDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAVS 65
>pdb|1CPZ|A Chain A, Copper Chaperone Of Enterococcus Hirae (Apo-Form)
Length = 68
Score = 44.7 bits (104), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 129 FTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISELGF 188
F+V GM C CV +IE +G G+ V V L KA +++ + + TEI +I+ELG+
Sbjct: 4 FSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGY 63
Query: 189 PATVI 193
A VI
Sbjct: 64 QAEVI 68
Score = 33.5 bits (75), Expect = 0.12, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 36/66 (54%)
Query: 204 ELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKLG 263
E + GMSC CV +IE +V +++G+K V L ++ ++D ++ + I +LG
Sbjct: 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELG 62
Query: 264 FTTALL 269
+ ++
Sbjct: 63 YQAEVI 68
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 57 ISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDMGF 116
+ + GMTC CV +I + + GV ++V+L + A IRF+ + ET++ IED+G+
Sbjct: 6 VRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGY 65
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEK 261
E ++++GM+CA CV IET+V L G++ V L T+ R+D + + IE
Sbjct: 3 ERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIED 62
Query: 262 LGF 264
LG+
Sbjct: 63 LGY 65
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 126 EATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISE 185
E T V GM C CVK IE +G G+ V V L A IR+ + I I I +
Sbjct: 3 ERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIED 62
Query: 186 LGFPATVIDEAGSGEGELE 204
LG+ V+DE + E+E
Sbjct: 63 LGY--GVVDEQAAVSAEVE 79
>pdb|2LDI|A Chain A, Nmr Solution Structure Of Ziaan Sub Mutant
Length = 71
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 204 ELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKLG 263
++++ GM CA+C + IE ++++L G+ A V + T R YD + + E I LG
Sbjct: 6 QMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALG 65
Query: 264 FTTA 267
+T A
Sbjct: 66 YTLA 69
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 29/60 (48%)
Query: 57 ISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDMGF 116
+ + GM C +C ++I + GV V++ + ++P +E T++ I +G+
Sbjct: 7 MQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGY 66
>pdb|2OFH|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 204 ELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKLG 263
++++ GM C SC KIE S+++L G+ A V + T R YD + + E I LG
Sbjct: 11 QMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALG 70
Query: 264 FTTA 267
+T A
Sbjct: 71 YTLA 74
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 131 VDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISELGF 188
V GM C SC KIE ++ G+ V + + + Y +S I I+ LG+
Sbjct: 14 VGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGY 71
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 54 TVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIED 113
T + + GM C SC I ++ GV V++ + ++P +E T++ I
Sbjct: 9 TQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAA 68
Query: 114 MGFDARLPSTNDEATFTVDGMK 135
+G+ P +++ T++G K
Sbjct: 69 LGYTLAEP----KSSVTLNGHK 86
>pdb|2OFG|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 204 ELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKLG 263
++++ GM C SC KIE S+++L G+ A V + T R YD + + E I LG
Sbjct: 6 QMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALG 65
Query: 264 FTTA 267
+T A
Sbjct: 66 YTLA 69
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 131 VDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISELGF 188
V GM C SC KIE ++ G+ V + + + Y +S I I+ LG+
Sbjct: 9 VGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGY 66
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 54 TVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIED 113
T + + GM C SC I ++ GV V++ + ++P +E T++ I
Sbjct: 4 TQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAA 63
Query: 114 MGFDARLPSTNDEATFTVDGMK 135
+G+ P +++ T++G K
Sbjct: 64 LGYTLAEP----KSSVTLNGHK 81
>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
Coppper(I) Atpase Pacs In Its Apo Form
Length = 73
Score = 41.6 bits (96), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 203 LELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKL 262
+ L++ GM CA+C + IE ++ K+ G++S V ++ Y E T P+ + + +E+
Sbjct: 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETT-PQILTDAVERA 63
Query: 263 GFTTALLNSK 272
G+ +L +
Sbjct: 64 GYHARVLKQQ 73
Score = 37.4 bits (85), Expect = 0.010, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 51 MASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRIS 110
MA T+ + ++GM C +C ++I I PGV + +V+ + A + ++ T + L +
Sbjct: 1 MAQTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHG-ETTPQILTDA 59
Query: 111 IEDMGFDARL 120
+E G+ AR+
Sbjct: 60 VERAGYHARV 69
Score = 35.8 bits (81), Expect = 0.030, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 131 VDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISELGFPA 190
++GM+C +C IE I + PG+ S V +A + Y + +P + ++ G+ A
Sbjct: 9 LEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGE-TTPQILTDAVERAGYHA 67
Query: 191 TVIDE 195
V+ +
Sbjct: 68 RVLKQ 72
>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
Length = 71
Score = 40.8 bits (94), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 203 LELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKL 262
+ L++ GM CA+C + IE ++ K+ G++S V ++ Y E T P+ + + +E+
Sbjct: 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETT-PQILTDAVERA 63
Query: 263 GFTTALL 269
G+ +L
Sbjct: 64 GYHARVL 70
Score = 37.0 bits (84), Expect = 0.011, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 51 MASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRIS 110
MA T+ + ++GM C +C ++I I PGV + +V+ + A + ++ T + L +
Sbjct: 1 MAQTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHG-ETTPQILTDA 59
Query: 111 IEDMGFDARL 120
+E G+ AR+
Sbjct: 60 VERAGYHARV 69
Score = 35.0 bits (79), Expect = 0.046, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 131 VDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISELGFPA 190
++GM+C +C IE I + PG+ S V +A + Y + +P + ++ G+ A
Sbjct: 9 LEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGE-TTPQILTDAVERAGYHA 67
Query: 191 TVI 193
V+
Sbjct: 68 RVL 70
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 40.0 bits (92), Expect = 0.001, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 203 LELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKL 262
+ L++ GM C SC + IE ++ K+ G++S V ++ Y E T P+ + + +E+
Sbjct: 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETT-PQILTDAVERA 62
Query: 263 GFTTALL 269
G+ +L
Sbjct: 63 GYHARVL 69
Score = 35.8 bits (81), Expect = 0.028, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 52 ASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISI 111
A T+ + ++GM C SC ++I I PGV + +V+ + A + ++ T + L ++
Sbjct: 1 AQTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHG-ETTPQILTDAV 59
Query: 112 EDMGFDARL 120
E G+ AR+
Sbjct: 60 ERAGYHARV 68
Score = 34.7 bits (78), Expect = 0.055, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 131 VDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISELGFPA 190
++GM C SC IE I + PG+ S V +A + Y + +P + ++ G+ A
Sbjct: 8 LEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGE-TTPQILTDAVERAGYHA 66
Query: 191 TVI 193
V+
Sbjct: 67 RVL 69
>pdb|3DXS|X Chain X, Crystal Structure Of A Copper Binding Domain From Hma7, A
P- Type Atpase
Length = 74
Score = 38.9 bits (89), Expect = 0.003, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 55 VLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDM 114
+ + + GMTC +C N++ + GVF V+L Q A++ F+P + EE ++ IED
Sbjct: 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDA 63
Query: 115 GFDARL 120
GF+A +
Sbjct: 64 GFEAEI 69
Score = 36.2 bits (82), Expect = 0.019, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYD 246
++++ ++GM+CA+C N +E ++ + G+ A VAL R +D
Sbjct: 3 KIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFD 47
Score = 35.8 bits (81), Expect = 0.028, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 131 VDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISELGFPA 190
V GM C +C +EA + G+ VALL +A++ + +L+ +I I + GF A
Sbjct: 8 VTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGFEA 67
Query: 191 TVIDE 195
++ E
Sbjct: 68 EILAE 72
>pdb|1MWY|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In The
Apo-Form
pdb|1MWZ|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In The
Zn(Ii)-Form
Length = 73
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 206 KISGMSCASCVNKIETSVKKLAGIKSAVVALTTQR 240
K+SGM CA+C K+E +V++LAG+ V T++
Sbjct: 8 KVSGMDCAACARKVENAVRQLAGVNQVQVLFATEK 42
Score = 31.6 bits (70), Expect = 0.49, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 128 TFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIA 180
++ V GM C +C +K+E + + G+N V V K + D+ + E A
Sbjct: 6 SWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESA 58
>pdb|2KT2|A Chain A, Structure Of Nmera, The N-Terminal Hma Domain Of Tn501
Mercuric Reductase
pdb|2KT3|A Chain A, Structure Of Hg-Nmera, Hg(Ii) Complex Of The N-Terminal
Domain Of Tn501 Mercuric Reductase
Length = 69
Score = 37.4 bits (85), Expect = 0.009, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 131 VDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISELGFPA 190
+ GM C SC ++ + + PG+ S LV+ A++ SP + A+++ LG+ A
Sbjct: 6 ITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPG-TSPDALTAAVAGLGYKA 64
Query: 191 TVID 194
T+ D
Sbjct: 65 TLAD 68
Score = 34.7 bits (78), Expect = 0.068, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 205 LKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKLGF 264
LKI+GM+C SC ++ +++K+ G++SA+V+ + + T P + + LG+
Sbjct: 4 LKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAI-VPGTSPDALTAAVAGLGY 62
Query: 265 TTALLNS 271
L ++
Sbjct: 63 KATLADA 69
Score = 32.7 bits (73), Expect = 0.26, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 57 ISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDMGF 116
+ I GMTC SC + + + PGV + VS + A + P T+ + L ++ +G+
Sbjct: 4 LKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVP-GTSPDALTAAVAGLGY 62
Query: 117 DARL 120
A L
Sbjct: 63 KATL 66
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 35.8 bits (81), Expect = 0.028, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 57 ISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDMGF 116
+ ++GMTC CV +T ++ PGV ++VSLE+ A + + + L ++E+ G+
Sbjct: 4 LKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGT---ADPKALVQAVEEEGY 60
Query: 117 DARL 120
A +
Sbjct: 61 KAEV 64
Score = 32.7 bits (73), Expect = 0.24, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 131 VDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISELGFPA 190
V+GM C CV + + + PG+ V V+L +A + + D P + ++ E G+ A
Sbjct: 6 VEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTAD---PKALVQAVEEEGYKA 62
Query: 191 TVI 193
V+
Sbjct: 63 EVL 65
Score = 32.3 bits (72), Expect = 0.29, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 203 LELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKL 262
L+LK+ GM+C CV + ++KK+ G++ V+L ++G+ + P+ +++ +E+
Sbjct: 2 LKLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSL--EKGEALVE-GTADPKALVQAVEEE 58
Query: 263 GFTTALL 269
G+ +L
Sbjct: 59 GYKAEVL 65
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Query: 122 STND--EATFTVDGMKCQSCVKKIEATIGEKPGINSV 156
+TND EAT+ + M C++CV I+A + PGINS+
Sbjct: 2 TTNDTYEATYAIP-MHCENCVNDIKACLKNVPGINSL 37
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 62 MTCQSCVNTITDTIRAKPGVFNIKVSLEQK 91
M C++CVN I ++ PG+ ++ +EQ+
Sbjct: 15 MHCENCVNDIKACLKNVPGINSLNFDIEQQ 44
>pdb|2CRL|A Chain A, The Apo Form Of Hma Domain Of Copper Chaperone For
Superoxide Dismutase
Length = 98
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 62 MTCQSCVNTITDTIRAKPGVFNIKVSLE 89
MTCQSCV+ + +++ GV +++V LE
Sbjct: 27 MTCQSCVDAVRKSLQGVAGVQDVEVHLE 54
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 203 LELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQ 239
LE + M+C SCV+ + S++ +AG++ V L Q
Sbjct: 21 LEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQ 56
>pdb|2AJ0|A Chain A, Solution Structure Of Apocada
pdb|2AJ1|A Chain A, Solution Structure Of Apocada
Length = 71
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 205 LKISGMSCASCVNKIETSVKKLAGIKSAVV 234
++ G+SC +C K E +VK++ G+ A+V
Sbjct: 7 YRVDGLSCTNCAAKFERNVKEIEGVTEAIV 36
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 125 DEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAK 164
++ + VDG+ C +C K E + E G+ +V A+K
Sbjct: 3 EKTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASK 42
>pdb|1YG0|A Chain A, Solution Structure Of Apo-Copp From Helicobacter Pylori
Length = 66
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 126 EATFTVDGMKCQSCVKKIEATIGEKPGINSV 156
+ATF V + C CV KIE +GE G++ +
Sbjct: 2 KATFQVPSITCNHCVDKIEKFVGEIEGVSFI 32
>pdb|1QUP|A Chain A, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
pdb|1QUP|B Chain B, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
Length = 222
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 122 STND--EATFTVDGMKCQSCVKKIEATIGEKPGINSV 156
+TND EAT+ + C++CV I+A + PGINS+
Sbjct: 1 TTNDTYEATYAIP-XHCENCVNDIKACLKNVPGINSL 36
>pdb|2X5T|A Chain A, Crystal Structure Of Orf131 From Sulfolobus Islandicus
Rudivirus 1
Length = 96
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 217 NKIETSVKKLAGIKSAVVALTT--QRGKFRYDLEVTGPRDVMECI 259
NKI + + K+ GIK VV L Q GK RY L + + + I
Sbjct: 19 NKIASRILKIKGIKRIVVQLNAVPQDGKIRYSLTIHSQNNFRKQI 63
>pdb|1CQ3|A Chain A, Structure Of A Soluble Secreted Chemokine Inhibitor, Vcci,
From Cowpox Virus
pdb|1CQ3|B Chain B, Structure Of A Soluble Secreted Chemokine Inhibitor, Vcci,
From Cowpox Virus
Length = 233
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 82 FNIKVSLEQKNANIRFNPII-TNEETLRISIEDM 114
NIK S E+K++NI+ +P++ +N ++S ED+
Sbjct: 137 INIKCSEEEKDSNIKTHPVLGSNISHKKVSYEDI 170
>pdb|2X5H|A Chain A, Crystal Structure Of The Orf131 L26m L51m Double Mutant
From Sulfolobus Islandicus Rudivirus 1
pdb|2X5H|B Chain B, Crystal Structure Of The Orf131 L26m L51m Double Mutant
From Sulfolobus Islandicus Rudivirus 1
pdb|2X5H|C Chain C, Crystal Structure Of The Orf131 L26m L51m Double Mutant
From Sulfolobus Islandicus Rudivirus 1
pdb|2X5H|D Chain D, Crystal Structure Of The Orf131 L26m L51m Double Mutant
From Sulfolobus Islandicus Rudivirus 1
Length = 97
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 217 NKIETSVKKLAGIKSAVVALTT--QRGKFRYDLEVTGPRDVMECI 259
NKI + + K+ GIK VV L Q GK RY + + + + I
Sbjct: 20 NKIASRIMKIKGIKRIVVQLNAVPQDGKIRYSMTIHSQNNFRKQI 64
>pdb|3S4T|A Chain A, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
500288)from Polaromonas Sp. Js666
pdb|3S4T|B Chain B, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
500288)from Polaromonas Sp. Js666
pdb|3S4T|C Chain C, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
500288)from Polaromonas Sp. Js666
pdb|3S4T|D Chain D, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
500288)from Polaromonas Sp. Js666
pdb|3S4T|E Chain E, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
500288)from Polaromonas Sp. Js666
pdb|3S4T|F Chain F, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
500288)from Polaromonas Sp. Js666
pdb|3S4T|G Chain G, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
500288)from Polaromonas Sp. Js666
pdb|3S4T|H Chain H, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
500288)from Polaromonas Sp. Js666
Length = 348
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 253 RDVMECIEKLGFTTALLNSKDKDSR 277
R++ C+++LGF AL+N +D+R
Sbjct: 111 RELERCVKELGFVGALVNGFSQDNR 135
>pdb|4A47|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 54 TVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIED 113
T+ +++ M C SC +T ++ + ++V L K I EE LR +I
Sbjct: 1 TIQLTVPTMDCTSCAEAVTKAVQNEDAQATVQVDLTSKKVTITSA---LGEEQLRTAIAS 57
Query: 114 MGFD 117
G +
Sbjct: 58 AGHE 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,900,456
Number of Sequences: 62578
Number of extensions: 241280
Number of successful extensions: 578
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 450
Number of HSP's gapped (non-prelim): 124
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)