RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13021
(287 letters)
>gnl|CDD|238219 cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in
a number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases
and copper chaperones. HMA domain contains two cysteine
residues that are important in binding and transfer of
metal ions, such as copper, cadmium, cobalt and zinc. In
the case of copper, stoichiometry of binding is one Cu+
ion per binding domain. Repeats of the HMA domain in
copper chaperone has been associated with Menkes/Wilson
disease due to binding of multiple copper ions.
Length = 63
Score = 65.7 bits (161), Expect = 3e-14
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 57 ISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDMGF 116
+S++GMTC CV+ I + PGV +++V LE A + ++P ++ EE L IED G+
Sbjct: 2 LSVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEA-IEDAGY 60
Query: 117 DAR 119
AR
Sbjct: 61 KAR 63
Score = 64.5 bits (158), Expect = 7e-14
Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 204 ELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKLG 263
EL + GM+CA CV+KIE +++KL G++S V L T + YD EV+ P +++E IE G
Sbjct: 1 ELSVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVS-PEELLEAIEDAG 59
Query: 264 F 264
+
Sbjct: 60 Y 60
Score = 63.0 bits (154), Expect = 3e-13
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 128 TFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISELG 187
+V+GM C CV KIE + + PG+ SV V L KA + Y + +SP E+ +I + G
Sbjct: 1 ELSVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPE-VSPEELLEAIEDAG 59
Query: 188 FPAT 191
+ A
Sbjct: 60 YKAR 63
>gnl|CDD|215902 pfam00403, HMA, Heavy-metal-associated domain.
Length = 62
Score = 61.1 bits (149), Expect = 1e-12
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 204 ELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKLG 263
L++ GM+CA C K+E ++ KL G+ S V L T + D + + + IEK G
Sbjct: 1 TLRVPGMTCAGCAKKVEKALSKLPGVSSVSVDLETGKVTVTGDPDPLKLEKLKKAIEKAG 60
Query: 264 FT 265
+
Sbjct: 61 YE 62
Score = 53.4 bits (129), Expect = 1e-09
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 128 TFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISELG 187
T V GM C C KK+E + + PG++SV V L K + D + ++ +I + G
Sbjct: 1 TLRVPGMTCAGCAKKVEKALSKLPGVSSVSVDLETGKVTVTGDPDPLKLEKLKKAIEKAG 60
Query: 188 FP 189
+
Sbjct: 61 YE 62
Score = 51.1 bits (123), Expect = 5e-09
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 57 ISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDMGF 116
+ + GMTC C + + PGV ++ V LE + +P E L+ +IE G+
Sbjct: 2 LRVPGMTCAGCAKKVEKALSKLPGVSSVSVDLETGKVTVTGDPDPLKLEKLKKAIEKAGY 61
Query: 117 D 117
+
Sbjct: 62 E 62
>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 713
Score = 61.8 bits (151), Expect = 9e-11
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLE-VTGPRDVMECIE 260
E L + GM+CA+C ++IE ++ KL G++ A V L T+R YD E V P D++ +E
Sbjct: 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVE 61
Query: 261 KLGFT---TALLNSKDKDSRGYLDQRTIAL 287
K G++ TA L + L + L
Sbjct: 62 KAGYSARLTAALADPAEAEARLLRELLRRL 91
Score = 49.9 bits (120), Expect = 6e-07
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 126 EATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLIS-PTEIAASIS 184
E + +V+GM C +C +IEA + + PG+ V L +A + Y + + P +I A++
Sbjct: 3 ETSLSVEGMTCAACASRIEA-LNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVE 61
Query: 185 ELGFPATV 192
+ G+ A +
Sbjct: 62 KAGYSARL 69
Score = 44.1 bits (105), Expect = 5e-05
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 54 TVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNP-IITNEETLRISIE 112
+S++GMTC +C + I + PGV +V+L + A + ++P + + ++E
Sbjct: 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVE 61
Query: 113 DMGFDARL 120
G+ ARL
Sbjct: 62 KAGYSARL 69
>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional.
Length = 834
Score = 60.9 bits (148), Expect = 2e-10
Identities = 50/219 (22%), Positives = 91/219 (41%), Gaps = 65/219 (29%)
Query: 51 MASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITN--EETLR 108
M+ T+ +++DG++C CV + +++ +P V EQ + +I + E L
Sbjct: 1 MSQTIDLTLDGLSCGHCVKRVKESLEQRPDV-------EQADVSITEAHVTGTASAEALI 53
Query: 109 ISIEDMGFDARLPSTNDEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIR 168
+I+ G+DA + + L +
Sbjct: 54 ETIKQAGYDASVSHPKAKP---------------------------------LTESS--- 77
Query: 169 YSKDLISPTEIAASISELGFPATVIDEAGSGEGELELKISGMSCASCVNKIETSVKKLAG 228
I + A+ EL PA D+ S +L +SGMSCASCV++++ +++ + G
Sbjct: 78 -----IPSEALTAASEEL--PAATADDDDS----QQLLLSGMSCASCVSRVQNALQSVPG 126
Query: 229 IKSAVVALTTQRGKFRYDLEVTG---PRDVMECIEKLGF 264
+ A V L R L V G P+D+++ +EK G+
Sbjct: 127 VTQARVNLAE-----RTAL-VMGSASPQDLVQAVEKAGY 159
Score = 42.0 bits (99), Expect = 3e-04
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 35 PEVVVIDPS--PSSTSAEMASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKN 92
E + P++T+ + S L+ + GM+C SCV+ + + +++ PGV +V+L ++
Sbjct: 80 SEALTAASEELPAATADDDDSQQLL-LSGMSCASCVSRVQNALQSVPGVTQARVNLAERT 138
Query: 93 A 93
A
Sbjct: 139 A 139
>gnl|CDD|225328 COG2608, CopZ, Copper chaperone [Inorganic ion transport and
metabolism].
Length = 71
Score = 54.7 bits (132), Expect = 4e-10
Identities = 17/71 (23%), Positives = 32/71 (45%)
Query: 200 EGELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECI 259
+ LK+ GM+C CV +E +++++ G+ S V L +D ++E I
Sbjct: 1 MMKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAI 60
Query: 260 EKLGFTTALLN 270
E G+ +
Sbjct: 61 EDAGYKVEEIK 71
Score = 52.4 bits (126), Expect = 3e-09
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 53 STVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIE 112
+ ++GMTC CV T+ + GV ++ V LE+ A + F+ + E + +IE
Sbjct: 2 MKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIE 61
Query: 113 DMGFDA 118
D G+
Sbjct: 62 DAGYKV 67
Score = 47.8 bits (114), Expect = 1e-07
Identities = 20/69 (28%), Positives = 32/69 (46%)
Query: 126 EATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISE 185
+ T V+GM C CVK +E + E G+ SV V L A + + + + I +I +
Sbjct: 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIED 62
Query: 186 LGFPATVID 194
G+ I
Sbjct: 63 AGYKVEEIK 71
>gnl|CDD|188014 TIGR00003, TIGR00003, copper ion binding protein. This model
describes an apparently copper-specific subfamily of the
metal-binding domain HMA (pfam00403). Closely related
sequences outside this model include mercury resistance
proteins and repeated domains of eukaryotic eukaryotic
copper transport proteins. Members of this family are
strictly prokaryotic. The model identifies both small
proteins consisting of just this domain and N-terminal
regions of cation (probably copper) transporting ATPases
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 66
Score = 52.5 bits (126), Expect = 2e-09
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 128 TFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISELG 187
TF V GM C CV KIE +GE G++ V V L K + + +S TEI +I + G
Sbjct: 3 TFQVKGMSCNHCVDKIEKFVGEIEGVSKVKVQLEKEKVVVEFDAPNVSATEICEAILDAG 62
Query: 188 FPA 190
+
Sbjct: 63 YEV 65
Score = 41.0 bits (96), Expect = 3e-05
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 57 ISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDMGF 116
+ GM+C CV+ I + GV +KV LE++ + F+ + + +I D G+
Sbjct: 4 FQVKGMSCNHCVDKIEKFVGEIEGVSKVKVQLEKEKVVVEFDAPNVSATEICEAILDAGY 63
Query: 117 DA 118
+
Sbjct: 64 EV 65
Score = 40.2 bits (94), Expect = 5e-05
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 204 ELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKLG 263
++ GMSC CV+KIE V ++ G+ V L ++ +D ++ E I G
Sbjct: 3 TFQVKGMSCNHCVDKIEKFVGEIEGVSKVKVQLEKEKVVVEFDAPNVSATEICEAILDAG 62
Query: 264 F 264
+
Sbjct: 63 Y 63
>gnl|CDD|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase;
Provisional.
Length = 741
Score = 52.3 bits (126), Expect = 1e-07
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 206 KISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIE----K 261
K+SGM C SC K+E +V++LAG+ V T++ L V D+ +E K
Sbjct: 58 KVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEK------LVVDADNDIRAQVESAVQK 111
Query: 262 LGFTTALLNSKDKD--SRGYLDQRTIAL 287
GF+ + SR + +
Sbjct: 112 AGFSLRDEQAAAAAPESRLKSENLPLIT 139
Score = 35.0 bits (81), Expect = 0.044
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 117 DARLPSTNDEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISP 176
+ + ++ V GM C SC +K+E + + G+N V V K + D+ +
Sbjct: 45 EDTPLVSGTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQ 104
Query: 177 TEIAASISELGFPATVIDEAGS 198
E A + GF A +
Sbjct: 105 VESAV--QKAGFSLRDEQAAAA 124
Score = 29.6 bits (67), Expect = 2.2
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 41 DPSPSSTSAEMASTVLIS--IDGMTCQSCVNTITDTIRAKPGVFNIKV 86
S + S S + GM C SC + + +R GV ++V
Sbjct: 39 SSPTLSEDTPLVSGTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQV 86
>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional.
Length = 561
Score = 46.3 bits (110), Expect = 1e-05
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 128 TFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISELG 187
T + GM C SC ++ + + PG+ S V+ A++ SP + A+++ LG
Sbjct: 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVG-TSPDALTAAVAGLG 61
Query: 188 FPATVIDEAGS 198
+ AT+ D +
Sbjct: 62 YRATLADAPPT 72
Score = 44.8 bits (106), Expect = 3e-05
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 55 VLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDM 114
+ I GMTC SC + D + PGV + VS + +A + T+ + L ++ +
Sbjct: 2 TTLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEV-GTSPDALTAAVAGL 60
Query: 115 GFDARLPST 123
G+ A L
Sbjct: 61 GYRATLADA 69
Score = 44.4 bits (105), Expect = 5e-05
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEK 261
LKI+GM+C SC ++ +++K+ G++SA V+ + ++ P + +
Sbjct: 1 MTTLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGT-SPDALTAAVAG 59
Query: 262 LGFTTALLNSKDKDSRGYL 280
LG+ L ++ D+RG L
Sbjct: 60 LGYRATLADAPPTDNRGGL 78
>gnl|CDD|131107 TIGR02052, MerP, mercuric transport protein periplasmic component.
This model represents the periplasmic mercury (II)
binding protein of the bacterial mercury detoxification
system which passes mercuric ion to the MerT transporter
for subsequent reduction to Hg(0) by the mercuric
reductase MerA. MerP contains a distinctive GMTCXXC
motif associated with metal binding. MerP is related to
a larger family of metal binding proteins (pfam00403)
[Cellular processes, Detoxification].
Length = 92
Score = 38.9 bits (90), Expect = 3e-04
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 54 TVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIED 113
TV + + GMTC +C T+ ++ GV +V+ + K A + F+ TN + L + D
Sbjct: 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTD 83
Query: 114 MGFDARL 120
G+ + L
Sbjct: 84 AGYPSSL 90
Score = 32.3 bits (73), Expect = 0.066
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 205 LKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKLGF 264
L++ GM+C +C +ET+++K+ G+ A V T+ +D E T + + E G+
Sbjct: 27 LEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGY 86
Query: 265 TTAL 268
++L
Sbjct: 87 PSSL 90
>gnl|CDD|215516 PLN02957, PLN02957, copper, zinc superoxide dismutase.
Length = 238
Score = 35.9 bits (83), Expect = 0.015
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 210 MSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKLGFTTALL 269
M C CV ++ ++ L G+K+ V L+ Q + L + + + +E+ G L+
Sbjct: 14 MKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRV---LGSSPVKAMTAALEQTGRKARLI 70
Query: 270 NSKD 273
D
Sbjct: 71 GQGD 74
Score = 35.1 bits (81), Expect = 0.024
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 62 MTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITN--EETLRISIEDMGFDAR 119
M C+ CV + + + GV ++V L N +R ++ + + + ++E G AR
Sbjct: 14 MKCEGCVAAVKNKLETLEGVKAVEVDLS--NQVVR---VLGSSPVKAMTAALEQTGRKAR 68
Query: 120 LPSTNDEATFTV 131
L D F V
Sbjct: 69 LIGQGDPEDFLV 80
Score = 30.5 bits (69), Expect = 0.90
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 129 FTVDGMKCQSCVKKIEATIGEKPGINSVLVAL 160
F VD MKC+ CV ++ + G+ +V V L
Sbjct: 10 FMVD-MKCEGCVAAVKNKLETLEGVKAVEVDL 40
>gnl|CDD|220573 pfam10105, DUF2344, Uncharacterized protein conserved in bacteria
(DUF2344). This domain, found in various hypothetical
bacterial proteins and Radical Sam domain proteins, has
no known function.
Length = 186
Score = 33.7 bits (78), Expect = 0.056
Identities = 17/124 (13%), Positives = 42/124 (33%), Gaps = 25/124 (20%)
Query: 8 MDLEDKQDEEDKVVKEI---SVPPDVPIEVPEVVVIDPSPSSTSAEMASTV-LISIDGMT 63
MDLE ++ + + V+E +P + I EV I S A + + I++ +
Sbjct: 64 MDLELTEEIDPEEVRERLNAQLPEGLEIL--EVEEIPVKAPSLMALIEAAEYRITLPEES 121
Query: 64 CQSCVNTITD-------------------TIRAKPGVFNIKVSLEQKNANIRFNPIITNE 104
+ + + +P + +++ + + + +
Sbjct: 122 PEDLEEAVEAFLAAEELVVERTTKKGKKREVDIRPLLKELELEGDGNALVLELLLLRGSG 181
Query: 105 ETLR 108
+LR
Sbjct: 182 GSLR 185
>gnl|CDD|180984 PRK07454, PRK07454, short chain dehydrogenase; Provisional.
Length = 241
Score = 29.5 bits (67), Expect = 1.7
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 17/67 (25%)
Query: 150 KPGINSVLVA-----LLAAKAEIR--------YSKDLISPTEIAASISEL----GFPATV 192
K G + LVA L A AE+R YS DL +P IA I+EL G P +
Sbjct: 28 KAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCPDVL 87
Query: 193 IDEAGSG 199
I+ AG
Sbjct: 88 INNAGMA 94
>gnl|CDD|233704 TIGR02064, dsrA, sulfite reductase, dissimilatory-type alpha
subunit. Dissimilatory sulfite reductase catalyzes the
six-electron reduction of sulfite to sulfide, as the
terminal reaction in dissimilatory sulfate reduction. It
remains unclear however, whether trithionate and
thiosulfate serve as intermediate compounds to sulfide,
or as end products of sulfite reduction. Sulfite
reductase is a multisubunit enzyme composed of dimers of
either alpha/beta or alpha/beta/gamma subunits, each
containing a siroheme and iron sulfur cluster prosthetic
center. Found in sulfate-reducing bacteria, these genes
are commonly located in an unidirectional gene cluster.
This model describes the alpha subunit of sulfite
reductase [Central intermediary metabolism, Sulfur
metabolism].
Length = 402
Score = 27.5 bits (61), Expect = 9.9
Identities = 27/133 (20%), Positives = 42/133 (31%), Gaps = 28/133 (21%)
Query: 64 CQSCVNTITDTIRAKPGV---FNIKVS---LEQKNANIR--FNPIIT-------NEETLR 108
C D + +P F K S + A R F I T ++E ++
Sbjct: 177 CYELTMEYQDEL-HRPAFPYKFKFKFSGCPNDCVAAIARSDFAVIGTWKDDIKVDQEAVK 235
Query: 109 ISIEDMGFDA-------RLP----STNDEATFTVDGMKCQSCVKKI-EATIGEKPGINSV 156
I G R P S + ++D +C C+ I + PG
Sbjct: 236 AYIAGWGKFDIENEVVNRCPTKAISWDGSKELSIDNRECVRCMHCINKMPKALHPGDERG 295
Query: 157 LVALLAAKAEIRY 169
+ L+ KA I
Sbjct: 296 VTILIGGKAPILD 308
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.131 0.356
Gapped
Lambda K H
0.267 0.0793 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,170,013
Number of extensions: 1339077
Number of successful extensions: 964
Number of sequences better than 10.0: 1
Number of HSP's gapped: 955
Number of HSP's successfully gapped: 43
Length of query: 287
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 191
Effective length of database: 6,679,618
Effective search space: 1275807038
Effective search space used: 1275807038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.0 bits)