RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13021
(287 letters)
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like
fold, structural genomics, structural proteomics in
europe, spine, hydrolase; NMR {Homo sapiens}
Length = 149
Score = 158 bits (402), Expect = 6e-49
Identities = 63/143 (44%), Positives = 95/143 (66%)
Query: 126 EATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISE 185
+ + GM C SCV IE + ++ G+ SVLVAL+A KAEI+Y ++I P EIA I +
Sbjct: 5 KCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQD 64
Query: 186 LGFPATVIDEAGSGEGELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRY 245
LGF A V+++ +G +EL I+GM+CASCV+ IE+ + + GI A VAL T + ++
Sbjct: 65 LGFEAAVMEDYAGSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKF 124
Query: 246 DLEVTGPRDVMECIEKLGFTTAL 268
D E+ GPRD+++ IE++GF +L
Sbjct: 125 DPEIIGPRDIIKIIEEIGFHASL 147
Score = 138 bits (349), Expect = 5e-41
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 5/148 (3%)
Query: 51 MAS-TVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRI 109
MA + I GMTC SCV+ I ++ + GV ++ V+L A I+++P + +
Sbjct: 1 MAPQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQ 60
Query: 110 SIEDMGFDARLPSTND----EATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKA 165
I+D+GF+A + T+ GM C SCV IE+ + GI VAL +KA
Sbjct: 61 FIQDLGFEAAVMEDYAGSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKA 120
Query: 166 EIRYSKDLISPTEIAASISELGFPATVI 193
+++ ++I P +I I E+GF A++
Sbjct: 121 LVKFDPEIIGPRDIIKIIEEIGFHASLA 148
Score = 78.9 bits (195), Expect = 2e-18
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEK 261
+ L+I GM+CASCV+ IE +++K AG+ S +VAL + + +YD EV P ++ + I+
Sbjct: 5 KCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQD 64
Query: 262 LGFTTALLNSKDKDSR 277
LGF A++
Sbjct: 65 LGFEAAVMEDYAGSDG 80
Score = 77.8 bits (192), Expect = 5e-18
Identities = 23/80 (28%), Positives = 38/80 (47%)
Query: 41 DPSPSSTSAEMASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPI 100
+ + A + ++I GMTC SCV+ I + G+ V+L A ++F+P
Sbjct: 68 EAAVMEDYAGSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPE 127
Query: 101 ITNEETLRISIEDMGFDARL 120
I + IE++GF A L
Sbjct: 128 IIGPRDIIKIIEEIGFHASL 147
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase,
water-soluble region, beta-alpha-beta- beta-alpha-beta
fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1
PDB: 2rml_A
Length = 151
Score = 142 bits (359), Expect = 2e-42
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 8/153 (5%)
Query: 122 STNDEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAA 181
S E V GM C +C +IE + PG+ V L + Y I
Sbjct: 3 SEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQE 62
Query: 182 SISELGFPATVIDEAGSGEGELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRG 241
I +LG+ + E I GM+CA+C N+IE + K+ G+ +A V +
Sbjct: 63 KIEKLGYHVVTE--------KAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETV 114
Query: 242 KFRYDLEVTGPRDVMECIEKLGFTTALLNSKDK 274
Y+ + D+ E ++KLG+ L +D
Sbjct: 115 TVEYNPKEASVSDLKEAVDKLGYKLKLKGEQDS 147
Score = 132 bits (333), Expect = 1e-38
Identities = 35/148 (23%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Query: 54 TVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIED 113
+ + + GMTC +C I ++ PGV + V+L + N+ ++P T ++ IE
Sbjct: 7 EIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEK 66
Query: 114 MGFDARLPSTNDEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDL 173
+G+ ++A F ++GM C +C +IE + + G+ + V + Y+
Sbjct: 67 LGYHVVT----EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKE 122
Query: 174 ISPTEIAASISELGFPATVIDEAGSGEG 201
S +++ ++ +LG+ + E S EG
Sbjct: 123 ASVSDLKEAVDKLGYKLKLKGEQDSIEG 150
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility,
protein-protein interaction, alternative splicing,
ATP-binding, copper transport cytoplasm; NMR {Homo
sapiens}
Length = 202
Score = 136 bits (344), Expect = 1e-39
Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 29/194 (14%)
Query: 110 SIEDMGFDARLPSTNDEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRY 169
+ E +G T +DGM C+SCV IE IG+ G+ S+ V+L A+++Y
Sbjct: 8 NSETLGHQGSHVVT---LQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKY 64
Query: 170 SKDLISPTEIAASISEL---GFPATVIDEAGS-----------------------GEGEL 203
SP + +I L F ++ D A
Sbjct: 65 DPSCTSPVALQRAIEALPPGNFKVSLPDGAEGSGTDHRSSSSHSPGSPPRNQVQGTCSTT 124
Query: 204 ELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKLG 263
+ I+GM+CASCV+ IE + +L G++ V+L Y+ V P ++ IE +G
Sbjct: 125 LIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMG 184
Query: 264 FTTALLNSKDKDSR 277
F ++++ +
Sbjct: 185 FEASVVSESCSTNP 198
Score = 83.1 bits (205), Expect = 2e-19
Identities = 35/101 (34%), Positives = 48/101 (47%)
Query: 27 PPDVPIEVPEVVVIDPSPSSTSAEMASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKV 86
P + ST LI+I GMTC SCV++I I GV I V
Sbjct: 96 GSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAIAGMTCASCVHSIEGMISQLEGVQQISV 155
Query: 87 SLEQKNANIRFNPIITNEETLRISIEDMGFDARLPSTNDEA 127
SL + A + +NP + + E LR +IEDMGF+A + S +
Sbjct: 156 SLAEGTATVLYNPAVISPEELRAAIEDMGFEASVVSESCST 196
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein
interaction, copper(I), metal homeostasis, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
1yjt_A 1yju_A 1yjv_A
Length = 75
Score = 89.3 bits (222), Expect = 4e-23
Identities = 36/71 (50%), Positives = 49/71 (69%)
Query: 199 GEGELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMEC 258
G+G LEL + GM+CASCV+KIE+S+ K GI VAL T + +YD E+ GPRD++
Sbjct: 2 GDGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHT 61
Query: 259 IEKLGFTTALL 269
IE LGF +L+
Sbjct: 62 IESLGFEPSLV 72
Score = 68.1 bits (167), Expect = 3e-15
Identities = 20/70 (28%), Positives = 36/70 (51%)
Query: 54 TVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIED 113
+ + + GMTC SCV+ I ++ G+ V+L A+I+++P I + +IE
Sbjct: 5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIES 64
Query: 114 MGFDARLPST 123
+GF+ L
Sbjct: 65 LGFEPSLVKI 74
Score = 67.4 bits (165), Expect = 7e-15
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 123 TNDEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAAS 182
+ V GM C SCV KIE+++ + GI VAL KA I+Y ++I P +I +
Sbjct: 2 GDGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHT 61
Query: 183 ISELGFPATVIDE 195
I LGF +++
Sbjct: 62 IESLGFEPSLVKI 74
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain,
hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB:
2aw0_A
Length = 72
Score = 82.7 bits (205), Expect = 1e-20
Identities = 36/71 (50%), Positives = 49/71 (69%)
Query: 51 MASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRIS 110
+ +I+IDGMTC SCV +I I KPGV +I+VSL N + ++P++T+ ETLR +
Sbjct: 1 LTQETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGA 60
Query: 111 IEDMGFDARLP 121
IEDMGFDA L
Sbjct: 61 IEDMGFDATLS 71
Score = 78.1 bits (193), Expect = 7e-19
Identities = 26/69 (37%), Positives = 35/69 (50%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEK 261
E + I GM+C SCV IE + K G+KS V+L G YD +T P + IE
Sbjct: 4 ETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIED 63
Query: 262 LGFTTALLN 270
+GF L +
Sbjct: 64 MGFDATLSD 72
Score = 72.7 bits (179), Expect = 7e-17
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 126 EATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISE 185
E +DGM C SCV+ IE I +KPG+ S+ V+L + + Y L SP + +I +
Sbjct: 4 ETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIED 63
Query: 186 LGFPATVID 194
+GF AT+ D
Sbjct: 64 MGFDATLSD 72
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR
{Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Length = 79
Score = 83.2 bits (206), Expect = 1e-20
Identities = 36/77 (46%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 48 SAEMASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETL 107
S + +V IS++GMTC SCV TI I GV +IKVSLE+KNA I ++P + +TL
Sbjct: 4 SMGVN-SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTL 62
Query: 108 RISIEDMGFDARLPSTN 124
+ +I+DMGFDA + + +
Sbjct: 63 QEAIDDMGFDAVIHNPD 79
Score = 76.2 bits (188), Expect = 3e-18
Identities = 21/77 (27%), Positives = 38/77 (49%)
Query: 195 EAGSGEGELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRD 254
+ G + + + GM+C SCV IE + K+ G+ V+L + YD ++ P+
Sbjct: 2 DPSMGVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKT 61
Query: 255 VMECIEKLGFTTALLNS 271
+ E I+ +GF + N
Sbjct: 62 LQEAIDDMGFDAVIHNP 78
Score = 70.8 bits (174), Expect = 4e-16
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 121 PSTNDEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIA 180
+ T +V+GM C SCV IE IG+ G++ + V+L A I Y L +P +
Sbjct: 4 SMGVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQ 63
Query: 181 ASISELGFPATVIDE 195
+I ++GF A + +
Sbjct: 64 EAIDDMGFDAVIHNP 78
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal
homeostasis, chaperone, ION transport, metal- binding,
alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Length = 75
Score = 81.6 bits (202), Expect = 3e-20
Identities = 35/71 (49%), Positives = 50/71 (70%)
Query: 53 STVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIE 112
++V IS++GMTC SCV TI I GV +IKVSLE+KNA I ++P + +TL+ +I+
Sbjct: 2 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAID 61
Query: 113 DMGFDARLPST 123
DMGFDA + +
Sbjct: 62 DMGFDAVIHNI 72
Score = 76.2 bits (188), Expect = 3e-18
Identities = 20/73 (27%), Positives = 38/73 (52%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEK 261
+ + + GM+C SCV IE + K+ G+ V+L + YD ++ P+ + E I+
Sbjct: 3 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDD 62
Query: 262 LGFTTALLNSKDK 274
+GF + N + +
Sbjct: 63 MGFDAVIHNIEGR 75
Score = 70.4 bits (173), Expect = 4e-16
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 125 DEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASIS 184
+ T +V+GM C SCV IE IG+ G++ + V+L A I Y L +P + +I
Sbjct: 2 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAID 61
Query: 185 ELGFPATVIDEAG 197
++GF A + + G
Sbjct: 62 DMGFDAVIHNIEG 74
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold,
beta-alpha-beta-BETA-alpha-beta structure, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
1y3k_A
Length = 77
Score = 81.6 bits (202), Expect = 4e-20
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEK 261
+ ++++GM+CASCV IE ++++ GI S +VAL + + RY+ V P + E I +
Sbjct: 4 KCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRE 63
Query: 262 LGFTTALLNSKDK 274
LGF ++ + +
Sbjct: 64 LGFGATVIENIEG 76
Score = 76.2 bits (188), Expect = 3e-18
Identities = 35/73 (47%), Positives = 45/73 (61%)
Query: 124 NDEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASI 183
+ + V GM C SCV IE + + GI S+LVAL+A KAE+RY+ +I P IA I
Sbjct: 2 SSKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFI 61
Query: 184 SELGFPATVIDEA 196
ELGF ATVI+
Sbjct: 62 RELGFGATVIENI 74
Score = 71.6 bits (176), Expect = 2e-16
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 52 ASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISI 111
+S I + GMTC SCV I +R + G+++I V+L A +R+NP + + I
Sbjct: 2 SSKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFI 61
Query: 112 EDMGFDARLPSTNDE 126
++GF A + +
Sbjct: 62 RELGFGATVIENIEG 76
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure,
structural genomics, structural proteomics in europe,
spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Length = 90
Score = 81.0 bits (200), Expect = 7e-20
Identities = 28/75 (37%), Positives = 39/75 (52%)
Query: 53 STVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIE 112
ST IDGM C+SCV+ I T+ A V +I VSLE ++A + +N E+LR +IE
Sbjct: 3 STATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIE 62
Query: 113 DMGFDARLPSTNDEA 127
+ S E
Sbjct: 63 AVSPGLYRVSITSEV 77
Score = 75.6 bits (186), Expect = 1e-17
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 124 NDEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASI 183
+ ATF +DGM C+SCV IE+T+ ++S++V+L A + Y+ ++P + +I
Sbjct: 2 DSTATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAI 61
Query: 184 SELGFPATVIDEAGSGEGELELK 206
+ + E E L+
Sbjct: 62 EAVSPGLYRVSITSEVEIEGRLE 84
Score = 73.6 bits (181), Expect = 5e-17
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 200 EGELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECI 259
+ I GM C SCV+ IE+++ L + S VV+L + Y+ P + + I
Sbjct: 2 DSTATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAI 61
Query: 260 EKLGF 264
E +
Sbjct: 62 EAVSP 66
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold,
ATP- binding, ethylene signaling pathway, hydrolase, ION
transport; 1.70A {Arabidopsis thaliana}
Length = 74
Score = 80.4 bits (199), Expect = 8e-20
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEK 261
++++ ++GM+CA+C N +E ++ + G+ A VAL R +D + D+ E IE
Sbjct: 3 KIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIED 62
Query: 262 LGFTTALLNSK 272
GF +L +
Sbjct: 63 AGFEAEILAEE 73
Score = 72.3 bits (178), Expect = 1e-16
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 54 TVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIED 113
+ + + GMTC +C N++ + GVF V+L Q A++ F+P + EE ++ IED
Sbjct: 3 KIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIED 62
Query: 114 MGFDARLPST 123
GF+A + +
Sbjct: 63 AGFEAEILAE 72
Score = 70.4 bits (173), Expect = 4e-16
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 126 EATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISE 185
+ V GM C +C +EA + G+ VALL +A++ + +L+ +I I +
Sbjct: 3 KIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIED 62
Query: 186 LGFPATVIDE 195
GF A ++ E
Sbjct: 63 AGFEAEILAE 72
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR
{Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A
2ggp_B
Length = 72
Score = 80.0 bits (198), Expect = 1e-19
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEK 261
E+ L + GM+C++C N I T ++ L G+ ++L T + YD EVT + E IE
Sbjct: 3 EVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVT-ADSIKEIIED 61
Query: 262 LGFTTALLNS 271
GF +L
Sbjct: 62 CGFDCEILRD 71
Score = 77.3 bits (191), Expect = 1e-18
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 52 ASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISI 111
A V++++ GMTC +C NTI +RA GV +SL + ++ +T + ++ I
Sbjct: 1 AREVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADS-IKEII 59
Query: 112 EDMGFDARLPSTN 124
ED GFD + +
Sbjct: 60 EDCGFDCEILRDS 72
Score = 68.0 bits (167), Expect = 3e-15
Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 126 EATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISE 185
E V GM C +C I + G+ ++L+ + ++ Y + ++ I I +
Sbjct: 3 EVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNE-VTADSIKEIIED 61
Query: 186 LGFPATVIDEA 196
GF ++ ++
Sbjct: 62 CGFDCEILRDS 72
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo
sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Length = 84
Score = 80.1 bits (198), Expect = 2e-19
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 196 AGSGEGELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDV 255
A +GE L++K+ GM+C SC + IE + KL G++ V+L Q Y + ++
Sbjct: 4 AQAGEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEM 63
Query: 256 MECIEKLGFTTALLNSKDK 274
+ IE +GF A + + K
Sbjct: 64 KKQIEAMGF-PAFVKKQPK 81
Score = 78.6 bits (194), Expect = 5e-19
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 46 STSAEMASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEE 105
S + + + ++GMTC SC +TI I GV IKVSL+ + A I + P + + E
Sbjct: 2 SMAQAGEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVE 61
Query: 106 TLRISIEDMGFDARLPSTN 124
++ IE MGF A +
Sbjct: 62 EMKKQIEAMGFPAFVKKQP 80
Score = 73.5 bits (181), Expect = 4e-17
Identities = 26/75 (34%), Positives = 36/75 (48%)
Query: 121 PSTNDEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIA 180
+ V+GM C SC IE IG+ G+ + V+L +A I Y LIS E+
Sbjct: 5 QAGEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMK 64
Query: 181 ASISELGFPATVIDE 195
I +GFPA V +
Sbjct: 65 KQIEAMGFPAFVKKQ 79
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold,
beta-alpha-beta-BETA-alpha-beta, struc genomics,
hydrolase, membrane protein; NMR {Synechocystis SP} PDB:
2ofh_X
Length = 111
Score = 80.6 bits (199), Expect = 2e-19
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEK 261
++++ GM C SC KIE S+++L G+ A V + T R YD + + E I
Sbjct: 9 TQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAA 68
Query: 262 LGFTTAL 268
LG+T A
Sbjct: 69 LGYTLAE 75
Score = 71.4 bits (175), Expect = 5e-16
Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 46 STSAEMASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEE 105
+ S+ + + + + GM C SC I ++ GV V++ + ++P +E
Sbjct: 2 TQSSPLKTQQM-QVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEI 60
Query: 106 TLRISIEDMGFDARLPSTNDEATFTVDGMKCQSCVKK 142
T++ I +G+ P +++ T++G K ++
Sbjct: 61 TIQERIAALGYTLAEP----KSSVTLNGHKHPHSHRE 93
Score = 68.7 bits (168), Expect = 5e-15
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 8/111 (7%)
Query: 121 PSTNDEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIA 180
S V GM C SC KIE ++ G+ V + + + Y +S I
Sbjct: 4 SSPLKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQ 63
Query: 181 ASISELGFPATVIDEAGSGEGELELKISGMSCASCVNKIETSVKKLAGIKS 231
I+ LG+ + ++G + S AG +
Sbjct: 64 ERIAALGYTLAEPKS--------SVTLNGHKHPHSHREEGHSHSHGAGEFN 106
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab
fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1
PDB: 1oq3_A 1oq6_A
Length = 76
Score = 77.4 bits (191), Expect = 1e-18
Identities = 26/71 (36%), Positives = 42/71 (59%)
Query: 198 SGEGELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVME 257
S + E+ +++SGM+CA+C +IE +K++ G+ A V L T+ YD TG + E
Sbjct: 3 SEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQE 62
Query: 258 CIEKLGFTTAL 268
IEKLG+ +
Sbjct: 63 KIEKLGYHVVI 73
Score = 63.1 bits (154), Expect = 2e-13
Identities = 18/71 (25%), Positives = 26/71 (36%)
Query: 122 STNDEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAA 181
S E V GM C +C +IE + PG+ V L + Y I
Sbjct: 3 SEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQE 62
Query: 182 SISELGFPATV 192
I +LG+ +
Sbjct: 63 KIEKLGYHVVI 73
Score = 62.8 bits (153), Expect = 4e-13
Identities = 17/69 (24%), Positives = 34/69 (49%)
Query: 54 TVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIED 113
+ + + GMTC +C I ++ PGV + V+L + N+ ++P T ++ IE
Sbjct: 7 EIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEK 66
Query: 114 MGFDARLPS 122
+G+ +
Sbjct: 67 LGYHVVIEG 75
>2l3m_A Copper-ION-binding protein; structural genomics, center for
structural genomics of infec diseases, csgid, metal
binding protein; NMR {Bacillus anthracis}
Length = 71
Score = 76.5 bits (189), Expect = 2e-18
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEK 261
+L L++ GMSC CVN IE+SVK+L G++ V L + D V +D++ IE
Sbjct: 6 QLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIED 65
Query: 262 LGFT 265
G+
Sbjct: 66 QGYD 69
Score = 73.8 bits (182), Expect = 2e-17
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 48 SAEMASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETL 107
S M L ++GM+C CVN I +++ GV +KV L + + + + + +
Sbjct: 1 SNAMEQLTL-QVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDI 59
Query: 108 RISIEDMGFDAR 119
IED G+D +
Sbjct: 60 VAVIEDQGYDVQ 71
Score = 66.5 bits (163), Expect = 1e-14
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 125 DEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASIS 184
++ T V+GM C CV IE+++ E G+ V V L E+ +++ +I A I
Sbjct: 5 EQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIE 64
Query: 185 ELGFPA 190
+ G+
Sbjct: 65 DQGYDV 70
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones,
hydrolase; NMR {Synechocystis SP}
Length = 71
Score = 76.2 bits (188), Expect = 3e-18
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEK 261
++++ GM CA+C + IE ++++L G+ A V + T R YD + + E I
Sbjct: 4 TQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAA 63
Query: 262 LGFT 265
LG+T
Sbjct: 64 LGYT 67
Score = 67.7 bits (166), Expect = 4e-15
Identities = 15/68 (22%), Positives = 31/68 (45%)
Query: 54 TVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIED 113
T + + GM C +C ++I + GV V++ + ++P +E T++ I
Sbjct: 4 TQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAA 63
Query: 114 MGFDARLP 121
+G+ P
Sbjct: 64 LGYTLAEP 71
Score = 61.5 bits (150), Expect = 7e-13
Identities = 15/66 (22%), Positives = 25/66 (37%)
Query: 126 EATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISE 185
V GM+C +C IE + G+ V + + + Y +S I I+
Sbjct: 4 TQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAA 63
Query: 186 LGFPAT 191
LG+
Sbjct: 64 LGYTLA 69
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation;
NMR {Enterococcus hirae} SCOP: d.58.17.1
Length = 68
Score = 75.8 bits (187), Expect = 3e-18
Identities = 18/66 (27%), Positives = 36/66 (54%)
Query: 204 ELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKLG 263
E + GMSC CV +IE +V +++G+K V L ++ ++D ++ + I +LG
Sbjct: 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELG 62
Query: 264 FTTALL 269
+ ++
Sbjct: 63 YQAEVI 68
Score = 69.2 bits (170), Expect = 1e-15
Identities = 17/64 (26%), Positives = 34/64 (53%)
Query: 57 ISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDMGF 116
S+ GM+C CV I + + GV +KV L+++ A ++F+ + +I ++G+
Sbjct: 4 FSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGY 63
Query: 117 DARL 120
A +
Sbjct: 64 QAEV 67
Score = 68.1 bits (167), Expect = 3e-15
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 128 TFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISELG 187
F+V GM C CV +IE +G G+ V V L KA +++ + + TEI +I+ELG
Sbjct: 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELG 62
Query: 188 FPATVI 193
+ A VI
Sbjct: 63 YQAEVI 68
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding,
metal selectivity, ferredoxin fold, ATP-binding,
hydrolase; NMR {Arabidopsis thaliana}
Length = 95
Score = 76.4 bits (188), Expect = 6e-18
Identities = 9/89 (10%), Positives = 33/89 (37%)
Query: 39 VIDPSPSSTSAEMASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFN 98
+ + + + G+ C S V I + +++ GV V + + + +
Sbjct: 2 LQNKEEEKKKVKKLQKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHD 61
Query: 99 PIITNEETLRISIEDMGFDARLPSTNDEA 127
++ + + ++ + +A + + +
Sbjct: 62 SLLISPFQIAKALNEARLEANVRVNGETS 90
Score = 75.6 bits (186), Expect = 1e-17
Identities = 13/72 (18%), Positives = 29/72 (40%)
Query: 204 ELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKLG 263
+ G+ C S V IE +K L G+K V + ++ +D + P + + + +
Sbjct: 19 YFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEAR 78
Query: 264 FTTALLNSKDKD 275
+ + +
Sbjct: 79 LEANVRVNGETS 90
Score = 72.1 bits (177), Expect = 2e-16
Identities = 19/75 (25%), Positives = 33/75 (44%)
Query: 126 EATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISE 185
++ F V G+ C S V IE + G+ V + + + + LISP +IA +++E
Sbjct: 17 KSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNE 76
Query: 186 LGFPATVIDEAGSGE 200
A V +
Sbjct: 77 ARLEANVRVNGETSF 91
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding
protein, perisplasm, structural genomics; 2.00A
{Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A
1afj_A 2hqi_A
Length = 72
Score = 72.3 bits (178), Expect = 8e-17
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 54 TVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIED 113
TV +S+ GMTC +C T+ I GV + V+ E + A + F+ T+ + L + D
Sbjct: 4 TVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATAD 63
Query: 114 MGFDARLP 121
G+ + +
Sbjct: 64 AGYPSSVK 71
Score = 66.5 bits (163), Expect = 1e-14
Identities = 12/67 (17%), Positives = 33/67 (49%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEK 261
+ L + GM+C++C ++ ++ K+ G+ V T++ +D T + + +
Sbjct: 4 TVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATAD 63
Query: 262 LGFTTAL 268
G+ +++
Sbjct: 64 AGYPSSV 70
Score = 62.7 bits (153), Expect = 3e-13
Identities = 15/67 (22%), Positives = 33/67 (49%)
Query: 126 EATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISE 185
T +V GM C +C ++ I + G++ V V +A + + S ++ + ++
Sbjct: 4 TVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATAD 63
Query: 186 LGFPATV 192
G+P++V
Sbjct: 64 AGYPSSV 70
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus
subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Length = 69
Score = 71.9 bits (177), Expect = 1e-16
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 54 TVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIED 113
+ ++GM+CQ CV + ++ GV + V+LE ++ F+ + + + +IED
Sbjct: 3 QKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIED 62
Query: 114 MGFDA 118
G+D
Sbjct: 63 QGYDV 67
Score = 71.2 bits (175), Expect = 2e-16
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEK 261
+ L++ GMSC CV +ETSV +L G+ + V L + +D + +D+ + IE
Sbjct: 3 QKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIED 62
Query: 262 LGF 264
G+
Sbjct: 63 QGY 65
Score = 65.4 bits (160), Expect = 3e-14
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 126 EATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISE 185
+ T V+GM CQ CVK +E ++GE G+++V V L A K ++ + D +S +IA +I +
Sbjct: 3 QKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIED 62
Query: 186 LGFPA 190
G+
Sbjct: 63 QGYDV 67
>1jww_A Potential copper-transporting ATPase;
beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR
{Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Length = 80
Score = 71.6 bits (176), Expect = 2e-16
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEK 261
+ E I GM+CA+C N+IE + K+ G+ +A V + Y+ + D+ E ++K
Sbjct: 4 KAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDK 63
Query: 262 LGFTTALLNSKDKDSRG 278
LG+ L + G
Sbjct: 64 LGY-KLKLKGEQDSIEG 79
Score = 64.3 bits (157), Expect = 1e-13
Identities = 18/78 (23%), Positives = 38/78 (48%)
Query: 124 NDEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASI 183
++A F ++GM C +C +IE + + G+ + V + Y+ S +++ ++
Sbjct: 2 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAV 61
Query: 184 SELGFPATVIDEAGSGEG 201
+LG+ + E S EG
Sbjct: 62 DKLGYKLKLKGEQDSIEG 79
Score = 63.5 bits (155), Expect = 2e-13
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 51 MASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRIS 110
+ I+GMTC +C N I + GV N V+ + + +NP + L+ +
Sbjct: 1 VTEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEA 60
Query: 111 IEDMGFDARLPSTNDEAT 128
++ +G+ +L D
Sbjct: 61 VDKLGYKLKLKGEQDSIE 78
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 74.1 bits (183), Expect = 4e-15
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEK 261
E ++++GM+CA CV IET+V L G++ V L T+ R+D + + IE
Sbjct: 3 ERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIED 62
Query: 262 LGFTTALLNSKDKDSR 277
LG+ + +
Sbjct: 63 LGY-GVVDEQAAVSAE 77
Score = 68.7 bits (169), Expect = 3e-13
Identities = 28/77 (36%), Positives = 34/77 (44%)
Query: 126 EATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISE 185
E T V GM C CVK IE +G G+ V V L A IR+ + I I I +
Sbjct: 3 ERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIED 62
Query: 186 LGFPATVIDEAGSGEGE 202
LG+ A S E E
Sbjct: 63 LGYGVVDEQAAVSAEVE 79
Score = 62.5 bits (153), Expect = 3e-11
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 57 ISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDMGF 116
+ + GMTC CV +I + + GV ++V+L + A IRF+ + ET++ IED+G+
Sbjct: 6 VRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGY 65
Query: 117 DARLPSTNDEA 127
A
Sbjct: 66 GVVDEQAAVSA 76
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha-
beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1
PDB: 1mwz_A
Length = 73
Score = 66.3 bits (162), Expect = 1e-14
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 203 LELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKL 262
K+SGM CA+C K+E +V++LAG+ V T++ D ++ V ++K
Sbjct: 5 YSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRA--QVESALQKA 62
Query: 263 GFTTALLNSKD 273
G++ + +
Sbjct: 63 GYSLRDEQAAE 73
Score = 55.5 bits (134), Expect = 1e-10
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 123 TNDEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAAS 182
+ ++ V GM C +C +K+E + + G+N V V K + D ++ ++
Sbjct: 1 SGTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADND--IRAQVESA 58
Query: 183 ISELGFPATVIDEA 196
+ + G+ A
Sbjct: 59 LQKAGYSLRDEQAA 72
Score = 49.7 bits (119), Expect = 2e-08
Identities = 11/74 (14%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 52 ASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISI 111
+ + GM C +C + + +R GV ++V + + + I + + ++
Sbjct: 2 GTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQ--VESAL 59
Query: 112 EDMGFDARLPSTND 125
+ G+ R +
Sbjct: 60 QKAGYSLRDEQAAE 73
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding,
trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Length = 71
Score = 65.5 bits (160), Expect = 3e-14
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEK 261
+ L++ GM CA+C + IE ++ K+ G++S V ++ Y E T P+ + + +E+
Sbjct: 4 TINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETT-PQILTDAVER 62
Query: 262 LGFTTALL 269
G+ +L
Sbjct: 63 AGYHARVL 70
Score = 61.2 bits (149), Expect = 1e-12
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 51 MASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRIS 110
MA T+ + ++GM C +C ++I I PGV + +V+ + A + ++ T + L +
Sbjct: 1 MAQTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQI-LTDA 59
Query: 111 IEDMGFDARLP 121
+E G+ AR+
Sbjct: 60 VERAGYHARVL 70
Score = 54.7 bits (132), Expect = 2e-10
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 125 DEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASIS 184
++GM+C +C IE I + PG+ S V +A + Y + +P + ++
Sbjct: 3 QTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGE-TTPQILTDAVE 61
Query: 185 ELGFPATVI 193
G+ A V+
Sbjct: 62 RAGYHARVL 70
>1yg0_A COP associated protein; open-faced beta-sandwich, missing
C-terminal beta-sheet, Met transport; NMR {Helicobacter
pylori}
Length = 66
Score = 61.9 bits (151), Expect = 4e-13
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 54 TVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIED 113
+ +TC CV+ I + GV I VS+E+K+ + F+ T ++ ++ ++ D
Sbjct: 2 KATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPAT-QDLIKEALLD 60
Query: 114 MGFDA 118
G +
Sbjct: 61 AGQEV 65
Score = 54.2 bits (131), Expect = 4e-10
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 126 EATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISE 185
+ATF V + C CV KIE +GE G++ + V++ + + + I ++ +
Sbjct: 2 KATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAP-ATQDLIKEALLD 60
Query: 186 LGFPA 190
G
Sbjct: 61 AGQEV 65
Score = 51.5 bits (124), Expect = 3e-09
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEK 261
+ ++ ++C CV+KIE V ++ G+ V++ + +D T + E +
Sbjct: 2 KATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPAT-QDLIKEALLD 60
Query: 262 LGFT 265
G
Sbjct: 61 AGQE 64
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist
metal-binding, oxidoreductase; NMR {Pseudomonas
aeruginosa} PDB: 2kt3_A
Length = 69
Score = 62.0 bits (151), Expect = 4e-13
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 203 LELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKL 262
LKI+GM+C SC ++ +++K+ G++SA+V+ + + P + + L
Sbjct: 2 THLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTS-PDALTAAVAGL 60
Query: 263 GFTTALLNS 271
G+ L ++
Sbjct: 61 GYKATLADA 69
Score = 59.6 bits (145), Expect = 4e-12
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 57 ISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDMGF 116
+ I GMTC SC + + + PGV + VS + A + P + + L ++ +G+
Sbjct: 4 LKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTS-PDALTAAVAGLGY 62
Query: 117 DARLPS 122
A L
Sbjct: 63 KATLAD 68
Score = 55.4 bits (134), Expect = 1e-10
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 128 TFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISELG 187
+ GM C SC ++ + + PG+ S LV+ A++ SP + A+++ LG
Sbjct: 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPG-TSPDALTAAVAGLG 61
Query: 188 FPATVID 194
+ AT+ D
Sbjct: 62 YKATLAD 68
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A
Length = 66
Score = 59.2 bits (144), Expect = 4e-12
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 57 ISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDMGF 116
+ ++GMTC CV +T ++ PGV ++VSLE+ A + + + L ++E+ G+
Sbjct: 4 LKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGT---ADPKALVQAVEEEGY 60
Query: 117 DARLPS 122
A + +
Sbjct: 61 KAEVLA 66
Score = 55.7 bits (135), Expect = 9e-11
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 203 LELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKL 262
L+LK+ GM+C CV + ++KK+ G++ V+L P+ +++ +E+
Sbjct: 2 LKLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGT---ADPKALVQAVEEE 58
Query: 263 GFTTALL 269
G+ +L
Sbjct: 59 GYKAEVL 65
Score = 54.2 bits (131), Expect = 3e-10
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 128 TFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISELG 187
V+GM C CV + + + PG+ V V+L +A + + P + ++ E G
Sbjct: 3 KLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGT---ADPKALVQAVEEEG 59
Query: 188 FPATVI 193
+ A V+
Sbjct: 60 YKAEVL 65
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold,
beta-alpha-beta-BETA-alpha-beta, metal binding protein,
hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A
Length = 71
Score = 55.1 bits (133), Expect = 2e-10
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 204 ELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEV 249
++ G+SC +C K E +VK++ G+ A+V + + +
Sbjct: 6 VYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEASI 51
Score = 46.3 bits (110), Expect = 3e-07
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 125 DEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASIS 184
++ + VDG+ C +C K E + E G+ +V A+K + I E A +
Sbjct: 3 EKTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEAS-IQQVEQAGAFE 61
Query: 185 ELG 187
L
Sbjct: 62 HLK 64
Score = 44.0 bits (104), Expect = 2e-06
Identities = 11/55 (20%), Positives = 20/55 (36%)
Query: 51 MASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEE 105
MA + +DG++C +C ++ GV V+ + I E
Sbjct: 1 MAEKTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEASIQQVE 55
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain
ATU1203, ontario centre for ST proteomics, structural
genomics; NMR {Agrobacterium tumefaciens str}
Length = 85
Score = 52.9 bits (127), Expect = 2e-09
Identities = 9/78 (11%), Positives = 20/78 (25%), Gaps = 3/78 (3%)
Query: 41 DPSPSSTSAEMASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPI 100
S + + ++ MTC C I I + + +
Sbjct: 10 HSSGRENLYFQGAGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGV-- 67
Query: 101 ITNEETLRISIEDMGFDA 118
++ + I G+
Sbjct: 68 -SDAAHIAEIITAAGYTP 84
Score = 51.4 bits (123), Expect = 5e-09
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
Query: 120 LPSTNDEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEI 179
L +F V+ M C C I+ I + +V + + D I
Sbjct: 17 LYFQGAGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGVSD---AAHI 73
Query: 180 AASISELGFPA 190
A I+ G+
Sbjct: 74 AEIITAAGYTP 84
Score = 46.7 bits (111), Expect = 2e-07
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Query: 190 ATVIDEAGSGEGELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEV 249
++ + L + M+C C I+ +++K + ++ + V
Sbjct: 11 SSGRENLYFQGAGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRT------VVV 64
Query: 250 TGPRD---VMECIEKLGFT 265
G D + E I G+T
Sbjct: 65 GGVSDAAHIAEIITAAGYT 83
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal
binding domain, domain SWAP, ATP-BI cell membrane,
copper transport; HET: CIT; 2.00A {Archaeoglobus
fulgidus}
Length = 73
Score = 50.5 bits (121), Expect = 1e-08
Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 49 AEMASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLR 108
+ +++ + G++C CV + + + G KV L + + +
Sbjct: 1 GDSVEKIVLELSGLSCHHCVARVKKALE-EAGAKVEKVDLNEAVVAGNK----EDVDKYI 55
Query: 109 ISIEDMGFDARLPST 123
++E G+ A+L S+
Sbjct: 56 KAVEAAGYQAKLRSS 70
Score = 47.8 bits (114), Expect = 9e-08
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEK 261
++ L++SG+SC CV +++ ++++ G K V L ++ +E
Sbjct: 6 KIVLELSGLSCHHCVARVKKALEEA-GAKVEKVDLNEAVVAG----NKEDVDKYIKAVEA 60
Query: 262 LGFTTALLNS 271
G+ L +S
Sbjct: 61 AGYQAKLRSS 70
Score = 46.2 bits (110), Expect = 3e-07
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 125 DEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASIS 184
++ + G+ C CV +++ + E+ G V L A + + ++
Sbjct: 5 EKIVLELSGLSCHHCVARVKKAL-EEAGAKVEKVDLNEAVVAG----NKEDVDKYIKAVE 59
Query: 185 ELGFPATVIDEAGS 198
G+ A + A S
Sbjct: 60 AAGYQAKLRSSAWS 73
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis,
chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB:
2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Length = 64
Score = 49.3 bits (118), Expect = 2e-08
Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 54 TVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIED 113
T+ +++ + C++C +T ++ + ++V L K I EE LR +I
Sbjct: 2 TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSAL---GEEQLRTAIAS 58
Query: 114 MGFDA 118
G++
Sbjct: 59 AGYEV 63
Score = 48.1 bits (115), Expect = 5e-08
Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 128 TFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISELG 187
TV + C++C + + + + +V V L + K I + + ++ +I+ G
Sbjct: 4 QLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSA---LGEEQLRTAIASAG 60
Query: 188 FPA 190
+
Sbjct: 61 YEV 63
Score = 41.9 bits (99), Expect = 8e-06
Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEK 261
++L + ++C +C + +V+ + V LT+++ L + I
Sbjct: 2 TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEE---QLRTAIAS 58
Query: 262 LGFT 265
G+
Sbjct: 59 AGYE 62
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology,
protein structure initiative, joint for structural
genomics, JCSG; NMR {Thermotoga maritima}
Length = 67
Score = 45.9 bits (109), Expect = 3e-07
Identities = 12/65 (18%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 54 TVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIED 113
++ + ++C C I+ + GV N +VS+E+K + N +++ +E+
Sbjct: 2 RYVLYVPDISCNHCKMRISKALEE-LGVKNYEVSVEEKKVVVETE----NLDSVLKKLEE 56
Query: 114 MGFDA 118
+ +
Sbjct: 57 IDYPV 61
Score = 45.6 bits (108), Expect = 4e-07
Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 126 EATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISE 185
V + C C +I + E+ G+ + V++ K + + + + E
Sbjct: 2 RYVLYVPDISCNHCKMRISKAL-EELGVKNYEVSVEEKKVVVETE----NLDSVLKKLEE 56
Query: 186 LGFPATVIDE 195
+ +P E
Sbjct: 57 IDYPVESYQE 66
Score = 43.2 bits (102), Expect = 3e-06
Identities = 11/64 (17%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEK 261
L + +SC C +I ++++L G+K+ V++ ++ + V++ +E+
Sbjct: 2 RYVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETE----NLDSVLKKLEE 56
Query: 262 LGFT 265
+ +
Sbjct: 57 IDYP 60
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 44.8 bits (106), Expect = 1e-06
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTG---PRDVMEC 258
LE + M+C SCV+ + S++ +AG++ V L Q + V ++V
Sbjct: 20 TLEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQM------VLVHTTLPSQEVQAL 72
Query: 259 IEKLGFTTALLNSKDKDS 276
+E G L
Sbjct: 73 LEGTGRQAVLKGMGSGQL 90
Score = 41.4 bits (97), Expect = 3e-05
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 43 SPSSTSAEMASTVLISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIIT 102
+ S + T+ ++ MTCQSCV+ + +++ GV +++V LE + +
Sbjct: 9 ASDSGNQGTLCTLEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTT---L 64
Query: 103 NEETLRISIEDMGFDARLPST 123
+ ++ +E G A L
Sbjct: 65 PSQEVQALLEGTGRQAVLKGM 85
Score = 40.6 bits (95), Expect = 4e-05
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 112 EDMGFDARLPSTNDEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSK 171
M D+ T F V M CQSCV + ++ G+ V V L + +
Sbjct: 6 SGMASDSGNQGTLCTLEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTT- 63
Query: 172 DLISPTEIAASISELGFPATVIDEAGS 198
+ E+ A + G A +
Sbjct: 64 --LPSQEVQALLEGTGRQAVLKGMGSG 88
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 4e-06
Identities = 50/279 (17%), Positives = 78/279 (27%), Gaps = 107/279 (38%)
Query: 56 LISIDGMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDMG 115
LI T + T D + NI LE NP
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE--------NP---------------- 222
Query: 116 FDARLPSTNDEATFTVDGMKCQSCVKKIEATIGEKPGINSVLVAL----LAAK------A 165
+ P + + + SC P I ++ L + AK
Sbjct: 223 --SNTPDKDYLLSIPI------SC-----------PLI--GVIQLAHYVVTAKLLGFTPG 261
Query: 166 EIR--------YSKDLISPTEIAASISE----------------LGF------------P 189
E+R +S+ L++ IA + S +G P
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 190 ATVIDEAGSGEGELE--LKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDL 247
+ + D + EG L IS ++ + + + L K ++L
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL---- 377
Query: 248 EVTGPRDVMECIEKL-GFTTALLNSKDKDSRGYLDQRTI 285
V+GP + L G L K K G LDQ I
Sbjct: 378 VVSGPP------QSLYGLNLTLR--KAKAPSG-LDQSRI 407
Score = 42.7 bits (100), Expect = 1e-04
Identities = 27/172 (15%), Positives = 60/172 (34%), Gaps = 55/172 (31%)
Query: 155 SVLV--ALLAAKAEIR--YSKDLISPTEIAA------SISEL-----GFPATVIDEAGSG 199
+LV A ++++ ++K L PTE A + +EL G+ +++++ + G
Sbjct: 19 VLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVG 78
Query: 200 EGELELKISGMSCASCVNKIETSVKKLAG--IKSAVVAL-----TTQRGKFR-----YDL 247
+ + L + + + E L G I + L TT
Sbjct: 79 QFDQVLNLC-------LTEFENCY--LEGNDIHALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 248 EVTGPRDVMECIEKLGFTTALLNS-KDKDSR------G------YLDQ-RTI 285
+ R + +AL + + +++ G Y ++ R +
Sbjct: 130 RIMAKRPFDKKSN-----SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Score = 40.4 bits (94), Expect = 6e-04
Identities = 39/189 (20%), Positives = 56/189 (29%), Gaps = 80/189 (42%)
Query: 104 EETLRISIEDMGFDARLPSTNDEATFTVDG------------MKCQSCV------KKIEA 145
++T SI D+ + P T G M ++ V +KI
Sbjct: 1654 KDTYGFSILDIVINN--PV---NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 146 TIGEKP------GINSVL-------VALLAAKAEIRYSKDLISPTEIAA--SISELGF-- 188
I E +L AL E AA + G
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQFTQPALTL--------------MEKAAFEDLKSKGLIP 1754
Query: 189 -PATVIDEAG-S-GEGELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRY 245
AT AG S GE + ++ + V IE+ V+ VV RG
Sbjct: 1755 ADATF---AGHSLGE------YAALASLADVMSIESLVE--------VVF---YRGMT-- 1792
Query: 246 DLEVTGPRD 254
++V PRD
Sbjct: 1793 -MQVAVPRD 1800
Score = 33.5 bits (76), Expect = 0.097
Identities = 33/166 (19%), Positives = 56/166 (33%), Gaps = 59/166 (35%)
Query: 109 ISIEDMGFDARLPSTNDEATFTVD--GMKCQSCVKKIEATIGEKPGINSVLVALLAAKAE 166
+SIE + + V GM Q V + E N ++A
Sbjct: 1777 MSIESL---VEV----------VFYRGMTMQVAVPR-----DELGRSNYGMIA------- 1811
Query: 167 IRYSKDLISPTEIAASISELGFPATVIDEAGSGEGELELKISGMSCASCVN---KIETSV 223
I+P +AAS S+ V++ G G L ++I VN + + V
Sbjct: 1812 -------INPGRVAASFSQEALQY-VVERVGKRTGWL-VEI--------VNYNVENQQYV 1854
Query: 224 KKLAGIKSAVVALT-------TQRGKFRYDLEVTGPRDVMECIEKL 262
AG A+ +T Q+ +L+ + + +E L
Sbjct: 1855 --AAGDLRALDTVTNVLNFIKLQKIDII-ELQKSLSLEEVE--GHL 1895
Score = 30.0 bits (67), Expect = 1.2
Identities = 13/103 (12%), Positives = 33/103 (32%), Gaps = 35/103 (33%)
Query: 1 MAGDTTVMDLEDKQDEEDKVVKEISVPPDVPIEV------PEVVVIDPSPSSTSAEMAST 54
+A + + Q+ VV+ + +E+ + V + ++
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA-------AGDLR-- 1860
Query: 55 VLISIDGMTCQSCVNTITDTIRAKPGVFNIKV-------SLEQ 90
++D V + + I+ + I + SLE+
Sbjct: 1861 ---ALD------TVTNVLNFIKLQ----KIDIIELQKSLSLEE 1890
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta,
cisplatin, platinum, chaperone, ION transport,
metal-binding, metal transport; HET: TCE; 1.60A {Homo
sapiens} PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B
1fe0_A* 3iwx_A 3cjk_A
Length = 68
Score = 41.2 bits (97), Expect = 1e-05
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 204 ELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTGPRDVMECIEKLG 263
E + M+C C + + KL G+K + L ++ + ++ ++K G
Sbjct: 5 EFSV-DMTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCIESEHS---MDTLLATLKKTG 59
Query: 264 FTTALLNSK 272
T + L +
Sbjct: 60 KTVSYLGLE 68
Score = 37.3 bits (87), Expect = 4e-04
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Query: 61 GMTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDMGFDARL 120
MTC C ++ + GV + L K I + +TL +++ G
Sbjct: 9 DMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEH---SMDTLLATLKKTGKTVSY 64
Query: 121 PST 123
Sbjct: 65 LGL 67
Score = 33.5 bits (77), Expect = 0.008
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 128 TFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISELG 187
F+VD M C C + + + + G+ + L K I S + A++ + G
Sbjct: 5 EFSVD-MTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESE---HSMDTLLATLKKTG 59
Query: 188 FPATVI 193
+ +
Sbjct: 60 KTVSYL 65
>1qup_A Superoxide dismutase 1 copper chaperone; two domains,
beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A
{Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Length = 222
Score = 40.8 bits (95), Expect = 2e-04
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 10/79 (12%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTG---PRDVMEC 258
E I M C +CVN I+ +K + GI S + Q + V P ++
Sbjct: 7 EATYAIP-MHCENCVNDIKACLKNVPGINSLNFDIEQQI------MSVESSVAPSTIINT 59
Query: 259 IEKLGFTTALLNSKDKDSR 277
+ G + + +S
Sbjct: 60 LRNCGKDAIIRGAGKPNSS 78
Score = 38.9 bits (90), Expect = 0.001
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 62 MTCQSCVNTITDTIRAKPGVFNIKVSLEQK 91
M C++CVN I ++ PG+ ++ +EQ+
Sbjct: 14 MHCENCVNDIKACLKNVPGINSLNFDIEQQ 43
Score = 37.0 bits (85), Expect = 0.004
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 126 EATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISE 185
EAT+ + M C++CV I+A + PGINS+ + + + ++P+ I ++
Sbjct: 7 EATYAIP-MHCENCVNDIKACLKNVPGINSLNFDIEQQIMSV---ESSVAPSTIINTLRN 62
Query: 186 LGFPATVIDEAGSGEGELELKISGMSCASCVNK 218
G A + + + + K
Sbjct: 63 CGKDAIIRGAGKPNSSAVAILETFQKYTIDQKK 95
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein
complex, heterodimer, metallochaperone, amyotrophic
lateral sclerosis; 2.90A {Saccharomyces cerevisiae}
SCOP: b.1.8.1 d.58.17.1
Length = 249
Score = 40.9 bits (95), Expect = 2e-04
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 10/81 (12%)
Query: 202 ELELKISGMSCASCVNKIETSVKKLAGIKSAVVALTTQRGKFRYDLEVTG---PRDVMEC 258
E I M C +CVN I+ +K + GI S + Q + V P ++
Sbjct: 8 EATYAIP-MHCENCVNDIKACLKNVPGINSLNFDIEQQI------MSVESSVAPSTIINT 60
Query: 259 IEKLGFTTALLNSKDKDSRGY 279
+ G + + +S
Sbjct: 61 LRNCGKDAIIRGAGKPNSSAV 81
Score = 39.4 bits (91), Expect = 7e-04
Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 62 MTCQSCVNTITDTIRAKPGVFNIKVSLEQKNANIRFNPIITNEETLRISIEDMGFDARLP 121
M C++CVN I ++ PG+ ++ +EQ+ ++ + T+ ++ + G DA +
Sbjct: 15 MHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESS---VAPSTIINTLRNCGKDAIIR 71
Query: 122 STNDEATFTVDGMK 135
+ V ++
Sbjct: 72 GAGKPNSSAVAILE 85
Score = 38.2 bits (88), Expect = 0.002
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 126 EATFTVDGMKCQSCVKKIEATIGEKPGINSVLVALLAAKAEIRYSKDLISPTEIAASISE 185
EAT+ + M C++CV I+A + PGINS+ + + + ++P+ I ++
Sbjct: 8 EATYAIP-MHCENCVNDIKACLKNVPGINSLNFDIEQQIMSV---ESSVAPSTIINTLRN 63
Query: 186 LGFPATVIDE 195
G A +
Sbjct: 64 CGKDAIIRGA 73
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury
coordination, metal transport; 1.02A {Saccharomyces
cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A
2ggp_A 3k7r_A
Length = 73
Score = 36.3 bits (84), Expect = 9e-04
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 11/66 (16%)
Query: 204 ELKISGMSCASCVNKIETSVKKL-AGIKSAVVALTTQRGKFRYDLEVTG---PRDVMECI 259
+ + M+C+ C + + KL + ++L Q ++V ++E I
Sbjct: 8 QFNVV-MTCSGCSGAVNKVLTKLEPDVSKIDISLEKQL------VDVYTTLPYDFILEKI 60
Query: 260 EKLGFT 265
+K G
Sbjct: 61 KKTGKE 66
Score = 34.0 bits (78), Expect = 0.006
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 128 TFTVDGMKCQSCVKKIEATIGE-KPGINSVLVALLAAKAEIRYSKDLISPTEIAASISEL 186
F V M C C + + + +P ++ + ++L ++ + + I I +
Sbjct: 8 QFNVV-MTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTT---LPYDFILEKIKKT 63
Query: 187 GFPAT 191
G
Sbjct: 64 GKEVR 68
Score = 33.2 bits (76), Expect = 0.011
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 51 MASTVLISID-GMTCQSCVNTITDTI-RAKPGVFNIKVSLEQK 91
MA + MTC C + + + +P V I +SLE++
Sbjct: 1 MAEIKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQ 43
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.052
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 14/36 (38%)
Query: 137 QSCVKKIEATI-----GEKPGINSVLVALLAAKAEI 167
Q+ +KK++A++ P LA KA +
Sbjct: 20 QA-LKKLQASLKLYADDSAPA--------LAIKATM 46
Score = 28.8 bits (63), Expect = 1.5
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 7/25 (28%)
Query: 216 VNKIETSVKKLA-------GIKSAV 233
+ K++ S+K A IK+ +
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATM 46
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide;
transferase; 2.30A {Saccharomyces cerevisiae} SCOP:
b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G
1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G*
2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H
3hou_G* 3hov_G* ...
Length = 171
Score = 29.5 bits (66), Expect = 0.91
Identities = 16/125 (12%), Positives = 39/125 (31%), Gaps = 18/125 (14%)
Query: 13 KQDEEDKVVKE----ISVPPDVPIEVPEVVVIDPSPSS-TSAEMASTVLISIDGMTCQSC 67
++ E + + V I++ ++ S+ + + + V G
Sbjct: 31 LEEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGT 90
Query: 68 VNTITDT-IRAKPGVFNIKVSLEQKNANIRFNP------------IITNEETLRISIEDM 114
V + + + G + V+ ++ FN +IT + +R+ IE
Sbjct: 91 VVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGC 150
Query: 115 GFDAR 119
Sbjct: 151 ISQVS 155
>2x5h_A ORF 131; viral protein; 1.80A {Sulfolobus islandicus rudivirus 1}
PDB: 2x5g_A* 2x5t_A
Length = 97
Score = 28.2 bits (62), Expect = 1.00
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 217 NKIETSVKKLAGIKSAVVALTT--QRGKFRYDLEV 249
NKI + + K+ GIK VV L Q GK RY + +
Sbjct: 20 NKIASRIMKIKGIKRIVVQLNAVPQDGKIRYSMTI 54
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast);
two-LOBE protein kinase fold, ATP-binding, nucleotid
binding, transferase; HET: TPO ADE; 1.45A {Homo
sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A
3ckx_A* 3ggf_A* 2xik_A*
Length = 303
Score = 28.1 bits (63), Expect = 3.8
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 7 VMDLEDKQDEEDKVVKEISV 26
++DLE+ +DE + + +EI+V
Sbjct: 54 IIDLEEAEDEIEDIQQEITV 73
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A
{Daucus carota} SCOP: b.80.1.5
Length = 319
Score = 27.7 bits (62), Expect = 4.2
Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 26/102 (25%)
Query: 48 SAEMASTVLISIDG----MTCQSCVNTITD------TIRAKPGVFNIKVSLEQKNANI-- 95
S+ + V+++ DG T V + IR K GV+ V + +K NI
Sbjct: 2 SSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMF 61
Query: 96 ----RFNPIITNEETLRISIEDMGFDARLPSTNDEATFTVDG 133
R + IIT + + +T + AT G
Sbjct: 62 LGDGRTSTIITASKNV----------QDGSTTFNSATVAAVG 93
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension,
transferase; HET: ANP; 2.15A {Homo sapiens} PDB:
3dak_A*
Length = 303
Score = 27.3 bits (61), Expect = 5.2
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 7 VMDLEDKQDEEDKVVKEISV 26
++LE Q D+++KEI
Sbjct: 47 RINLEKCQTSMDELLKEIQA 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.131 0.356
Gapped
Lambda K H
0.267 0.0824 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,266,172
Number of extensions: 261990
Number of successful extensions: 572
Number of sequences better than 10.0: 1
Number of HSP's gapped: 549
Number of HSP's successfully gapped: 126
Length of query: 287
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 194
Effective length of database: 4,105,140
Effective search space: 796397160
Effective search space used: 796397160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.6 bits)