BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13022
(93 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CJK|B Chain B, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
Length = 75
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 34/52 (65%)
Query: 20 IGARTGVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQVDGK 71
IG GV IKVSL +K A I Y+P L +PK L EAI DMGFD + ++G+
Sbjct: 24 IGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHNIEGR 75
>pdb|2K1R|A Chain A, The Solution Nmr Structure Of The Complex Between Mnk1
And Hah1 Mediated By Cu(I)
Length = 73
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 29/43 (67%)
Query: 20 IGARTGVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFD 62
IG GV IKVSL +K A I Y+P L +PK L EAI DMGFD
Sbjct: 26 IGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFD 68
>pdb|1KVI|A Chain A, Solution Structure Of The Reduced Form Of The First
Heavy Metal Binding Motif Of The Menkes Protein
pdb|1KVJ|A Chain A, Solution Structure Of The Cu(I) Bound Form Of The First
Heavy Metal Binding Motif Of The Menkes Protein
Length = 79
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 31/50 (62%)
Query: 20 IGARTGVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQVD 69
IG GV IKVSL +K A I Y+P L +PK L EAI DMGFD + D
Sbjct: 30 IGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHNPD 79
>pdb|2ROP|A Chain A, Solution Structure Of Domains 3 And 4 Of Human Atp7b
Length = 202
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%)
Query: 19 MIGARTGVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKV 65
MI GV I VSLA+ A + YNP ++SP+EL AI DMGF+ V
Sbjct: 143 MISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEASV 189
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 20 IGARTGVDSIKVSLADKEAVITYNPTLVSPKELSEAI 56
IG GV SI+VSL +K A + Y+P+ SP L AI
Sbjct: 42 IGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAI 78
>pdb|1S6O|A Chain A, Solution Structure And Backbone Dynamics Of The Apo-Form
Of The Second Metal-Binding Domain Of The Menkes
Protein Atp7a
pdb|1S6U|A Chain A, Solution Structure And Backbone Dynamics Of The Cu(I)
Form Of The Second Metal-Binding Domain Of The Menkes
Protein Atp7a
Length = 76
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 20 IGARTGVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQVDGK 71
IG GV IKVSL ++EA I Y P L+S +E+ + I MGF V +++G+
Sbjct: 25 IGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVKKIEGR 76
>pdb|1AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
pdb|2AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
Length = 72
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 19 MIGARTGVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVT 66
+I + GV SI+VSLA+ + Y+P L SP+ L AI DMGFD ++
Sbjct: 24 VISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATLS 71
>pdb|1Q8L|A Chain A, Second Metal Binding Domain Of The Menkes Atpase
Length = 84
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 IGARTGVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGF 61
IG GV IKVSL ++EA I Y P L+S +E+ + I MGF
Sbjct: 31 IGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGF 72
>pdb|2EW9|A Chain A, Solution Structure Of Apowln5-6
Length = 149
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQ 67
GV S+ V+L +A I Y+P ++ P E+++ I D+GF+ V +
Sbjct: 31 GVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAVME 73
Score = 32.0 bits (71), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 27/43 (62%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQ 67
G+ V+LA +A++ ++P ++ P+++ + I ++GF + Q
Sbjct: 107 GITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASLAQ 149
>pdb|1Y3K|A Chain A, Solution Structure Of The Apo Form Of The Fifth Domain
Of Menkes Protein
pdb|1Y3J|A Chain A, Solution Structure Of The Copper(I) Form Of The Fifth
Domain Of Menkes Protein
Length = 77
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQ-VDGK 71
G+ SI V+L +A + YNP ++ P ++E I ++GF V + ++G+
Sbjct: 30 GIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGFGATVIENIEGR 77
>pdb|1YJU|A Chain A, Solution Structure Of The Apo Form Of The Sixth Soluble
Domain Of Menkes Protein
pdb|1YJV|A Chain A, Solution Structure Of The Cu(i) Form Of The Sixth
Soluble Domain Of Menkes Protein
Length = 75
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 27/45 (60%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQVD 69
G+ V+LA +A I Y+P ++ P+++ I +GF+ + +++
Sbjct: 31 GILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEASLVKIE 75
>pdb|1YJR|A Chain A, Solution Structure Of The Apo Form Of The Sixth Soluble
Domain A69p Mutant Of Menkes Protein
pdb|1YJT|A Chain A, Solution Structure Of The Cu(I) Form Of The Sixth
Soluble Domain A69p Mutant Of Menkes Protein
Length = 75
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 27/45 (60%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQVD 69
G+ V+LA +A I Y+P ++ P+++ I +GF+ + +++
Sbjct: 31 GILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEPSLVKIE 75
>pdb|1AFI|A Chain A, Structure Of The Reduced Form Of Merp, The Periplasmic
Protein From The Bacterial Mercury Detoxification
System, Nmr, 20 Structures
pdb|1AFJ|A Chain A, Structure Of The Mercury-Bound Form Of Merp, The
Periplasmic Protein From The Bacterial Mercury
Detoxification System, Nmr, 20 Structures
pdb|2HQI|A Chain A, Nmr Solution Structure Of The Oxidized Form Of Merp, 14
Structures
Length = 72
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQ 67
GV + V +EAV+T++ T S ++L++A D G+ + V Q
Sbjct: 30 GVSKVDVGFEKREAVVTFDDTKASVQKLTKATADAGYPSSVKQ 72
>pdb|2G9O|A Chain A, Solution Structure Of The Apo Form Of The Third Metal-
Binding Domain Of Atp7a Protein (Menkes Disease
Protein)
pdb|2GA7|A Chain A, Solution Structure Of The Copper(I) Form Of The Third
Metal- Binding Domain Of Atp7a Protein (Menkes Disease
Protein)
Length = 90
Score = 32.0 bits (71), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 8/53 (15%)
Query: 26 VDSIKVSLADKEAVITYNPTLVSPKELSEAI-------YDMGFDTKVTQVDGK 71
V SI VSL ++ A++ YN + V+P+ L +AI Y + ++V +++G+
Sbjct: 31 VSSIVVSLENRSAIVVYNASSVTPESLRKAIEAVSPGLYRVSITSEV-EIEGR 82
>pdb|2L3M|A Chain A, Solution Structure Of The Putative Copper-Ion-Binding
Protein From Bacillus Anthracis Str. Ames
Length = 71
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTK 64
GV+ +KV LA+ +T + ++V+ K++ I D G+D +
Sbjct: 32 GVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGYDVQ 71
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQ 67
GV + V+ ++AV+T++ S ++L++A D G+ + V Q
Sbjct: 30 GVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSVKQ 72
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 25/42 (59%)
Query: 20 IGARTGVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGF 61
+G+ GV+ ++V+LA + A I ++ + + + I D+G+
Sbjct: 24 VGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGY 65
>pdb|1XKS|A Chain A, The Crystal Structure Of The N-Terminal Domain Of Nup133
Reveals A Beta-Propeller Fold Common To Several
Nucleoporins
Length = 450
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 21 GARTGVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTK---VTQVDGKPYV 74
G ++ V +A +E I Y P+L +EA D G D +T V G ++
Sbjct: 101 GEAHSTQAVAVMVATREGSIRYWPSLAGEDTYTEAFVDSGGDKTYSFLTAVQGGSFI 157
>pdb|1JWZ|A Chain A, Crystal Structure Of Tem-64 Beta-Lactamase In Complex With
A Boronic Acid Inhibitor (105)
Length = 263
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 28 SIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQVDGKPYVPETN 78
S ++++D A T+ PKEL+ +++MG VT++D + PE N
Sbjct: 99 SAAITMSDNTAANLLLTTIGGPKELTAFLHNMG--DHVTRLDS--WEPELN 145
>pdb|1KQK|A Chain A, Solution Structure Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis In The Cu(I)loaded State
Length = 80
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKV 65
GV + V+ A + + YNP S +L EA+ +G+ K+
Sbjct: 30 GVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKL 70
>pdb|2RML|A Chain A, Solution Structure Of The N-Terminal Soluble Domains Of
Bacillus Subtilis Copa
Length = 147
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKV 65
GV + V+ A + + YNP S +L EA+ +G+ K+
Sbjct: 101 GVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKL 141
>pdb|2VOY|A Chain A, Cryoem Model Of Copa, The Copper Transporting Atpase
From Archaeoglobus Fulgidus
pdb|1JWW|A Chain A, Nmr Characterization Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis
Length = 80
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKV 65
GV + V+ A + + YNP S +L EA+ +G+ K+
Sbjct: 30 GVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKL 70
>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
P- Type Atpase Copa From Bacillus Subtilis
Length = 151
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKV 65
GV + V+ A + + YNP S +L EA+ +G+ K+
Sbjct: 101 GVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKL 141
>pdb|3MHP|A Chain A, Fnr-Recruitment To The Thylakoid
pdb|3MHP|B Chain B, Fnr-Recruitment To The Thylakoid
Length = 296
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 21 GARTGVDSIKVSLADKEAV--ITYNPTLVSPKELSEAIY 57
G G+D I VSLA K+ + I Y TL ++ + +Y
Sbjct: 257 GMEKGIDDIMVSLAAKDGIDWIEYKRTLKKAEQWNVEVY 295
>pdb|4AF7|A Chain A, Pea Fnr C266m Mutant
pdb|4AF7|B Chain B, Pea Fnr C266m Mutant
Length = 308
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 21 GARTGVDSIKVSLADKEAV--ITYNPTLVSPKELSEAIY 57
G G+D I VSLA K+ + I Y TL ++ + +Y
Sbjct: 270 GMEKGIDDIMVSLAAKDGIDWIEYKRTLKKAEQWNVEVY 308
>pdb|1QG0|A Chain A, Wild-type Pea Fnr
pdb|1QG0|B Chain B, Wild-type Pea Fnr
Length = 308
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 21 GARTGVDSIKVSLADKEAV--ITYNPTLVSPKELSEAIY 57
G G+D I VSLA K+ + I Y TL ++ + +Y
Sbjct: 270 GMEKGIDDIMVSLAAKDGIDWIEYKRTLKKAEQWNVEVY 308
>pdb|4AF6|A Chain A, Pea Fnr L268v Mutant
pdb|4AF6|B Chain B, Pea Fnr L268v Mutant
Length = 308
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 21 GARTGVDSIKVSLADKEAV--ITYNPTLVSPKELSEAIY 57
G G+D I VSLA K+ + I Y TL ++ + +Y
Sbjct: 270 GMEKGIDDIMVSLAAKDGIDWIEYKRTLKKAEQWNVEVY 308
>pdb|2XNC|A Chain A, Crystal Structure Of An Engineered Ferredoxin Nadp
Reductase (Fnr) From Pisum Sativum
pdb|2XNC|B Chain B, Crystal Structure Of An Engineered Ferredoxin Nadp
Reductase (Fnr) From Pisum Sativum
Length = 315
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 21 GARTGVDSIKVSLADKEAV--ITYNPTLVSPKELSEAIY 57
G G+D I VSLA K+ + I Y TL ++ + +Y
Sbjct: 276 GMEKGIDDIMVSLAAKDGIDWIEYKRTLKKAEQWNVEVY 314
>pdb|3U2H|A Chain A, Crystal Structure Of The C-Terminal Duf1608 Domain Of The
Methanosarcina Acetivorans S-Layer (Ma0829) Protein
Length = 286
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 27 DSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQVDGKPYVPET 77
D++K+S D T+ T S +E+ E +Y M DT + + PYV +T
Sbjct: 231 DTLKISNED-----TFTLTRDSEEEIGEGMYFMIADTSSSDLRYYPYVEKT 276
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.134 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,481,187
Number of Sequences: 62578
Number of extensions: 82193
Number of successful extensions: 199
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 35
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)