RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13022
(93 letters)
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal
homeostasis, chaperone, ION transport, metal- binding,
alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Length = 75
Score = 61.9 bits (151), Expect = 1e-14
Identities = 27/54 (50%), Positives = 34/54 (62%)
Query: 18 SMIGARTGVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQVDGK 71
IG GV IKVSL +K A I Y+P L +PK L EAI DMGFD + ++G+
Sbjct: 22 QQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHNIEGR 75
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR
{Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Length = 79
Score = 58.1 bits (141), Expect = 4e-13
Identities = 27/52 (51%), Positives = 31/52 (59%)
Query: 18 SMIGARTGVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQVD 69
IG GV IKVSL +K A I Y+P L +PK L EAI DMGFD + D
Sbjct: 28 QQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHNPD 79
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain,
hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB:
2aw0_A
Length = 72
Score = 55.0 bits (133), Expect = 5e-12
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 18 SMIGARTGVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKV 65
+I + GV SI+VSLA+ + Y+P L SP+ L AI DMGFD +
Sbjct: 23 GVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATL 70
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure,
structural genomics, structural proteomics in europe,
spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Length = 90
Score = 53.6 bits (129), Expect = 3e-11
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 18 SMIGARTGVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQVDGK 71
S + A V SI VSL ++ A++ YN + V+P+ L +AI + + +
Sbjct: 23 STLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAVSPGLYRVSITSE 76
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo
sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Length = 84
Score = 53.1 bits (128), Expect = 3e-11
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQ 67
GV IKVSL ++EA I Y P L+S +E+ + I MGF V +
Sbjct: 36 GVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVKK 78
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility,
protein-protein interaction, alternative splicing,
ATP-binding, copper transport cytoplasm; NMR {Homo
sapiens}
Length = 202
Score = 54.6 bits (131), Expect = 7e-11
Identities = 24/53 (45%), Positives = 30/53 (56%)
Query: 18 SMIGARTGVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQVDG 70
MI GV I VSLA+ A + YNP ++SP+EL AI DMGF+ V
Sbjct: 142 GMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEASVVSESC 194
Score = 44.6 bits (105), Expect = 4e-07
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 18 SMIGARTGVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGF 61
IG GV SI+VSL +K A + Y+P+ SP L AI +
Sbjct: 40 ENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEALPP 83
>2l3m_A Copper-ION-binding protein; structural genomics, center for
structural genomics of infec diseases, csgid, metal
binding protein; NMR {Bacillus anthracis}
Length = 71
Score = 51.1 bits (123), Expect = 1e-10
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTK 64
GV+ +KV LA+ +T + ++V+ K++ I D G+D +
Sbjct: 32 GVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGYDVQ 71
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal
binding protein, perisplasm, structural genomics; 2.00A
{Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A
1afj_A 2hqi_A
Length = 72
Score = 50.8 bits (122), Expect = 2e-10
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQ 67
GV + V+ ++AV+T++ S ++L++A D G+ + V Q
Sbjct: 30 GVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSVKQ 72
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold,
beta-alpha-beta-BETA-alpha-beta structure, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
1y3k_A
Length = 77
Score = 50.4 bits (121), Expect = 3e-10
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQ-VDGK 71
G+ SI V+L +A + YNP ++ P ++E I ++GF V + ++G+
Sbjct: 30 GIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGFGATVIENIEGR 77
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A
{Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A
1p8g_A
Length = 69
Score = 50.4 bits (121), Expect = 3e-10
Identities = 12/38 (31%), Positives = 25/38 (65%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFD 62
GV ++ V+L + ++++ VS K++++AI D G+D
Sbjct: 29 GVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYD 66
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like
fold, structural genomics, structural proteomics in
europe, spine, hydrolase; NMR {Homo sapiens}
Length = 149
Score = 52.0 bits (125), Expect = 4e-10
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 18 SMIGARTGVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQVDGKP 72
+ GV S+ V+L +A I Y+P ++ P E+++ I D+GF+ V +
Sbjct: 24 RNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAVMEDYAGS 78
Score = 50.8 bits (122), Expect = 9e-10
Identities = 11/43 (25%), Positives = 27/43 (62%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQ 67
G+ V+LA +A++ ++P ++ P+++ + I ++GF + Q
Sbjct: 107 GITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASLAQ 149
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like
fold, ATP- binding, ethylene signaling pathway,
hydrolase, ION transport; 1.70A {Arabidopsis thaliana}
Length = 74
Score = 50.0 bits (120), Expect = 5e-10
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQVD 69
GV V+L A + ++P LV +++ E I D GF+ ++ +
Sbjct: 29 GVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGFEAEILAEE 73
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene
regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Length = 68
Score = 48.4 bits (116), Expect = 2e-09
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKV 65
GV +KV L ++AV+ ++ V E+ +AI ++G+ +V
Sbjct: 27 GVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEV 67
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein
interaction, copper(I), metal homeostasis, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
1yjt_A 1yju_A 1yjv_A
Length = 75
Score = 48.1 bits (115), Expect = 2e-09
Identities = 12/45 (26%), Positives = 27/45 (60%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQVD 69
G+ V+LA +A I Y+P ++ P+++ I +GF+ + +++
Sbjct: 31 GILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEPSLVKIE 75
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding,
metal selectivity, ferredoxin fold, ATP-binding,
hydrolase; NMR {Arabidopsis thaliana}
Length = 95
Score = 48.2 bits (115), Expect = 4e-09
Identities = 8/50 (16%), Positives = 26/50 (52%)
Query: 18 SMIGARTGVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQ 67
+++ + GV V + + ++ ++ L+SP ++++A+ + + V
Sbjct: 36 NILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEARLEANVRV 85
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase,
water-soluble region, beta-alpha-beta- beta-alpha-beta
fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1
PDB: 2rml_A
Length = 151
Score = 49.3 bits (118), Expect = 4e-09
Identities = 10/50 (20%), Positives = 20/50 (40%)
Query: 20 IGARTGVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQVD 69
+ GV V+LA + + Y+P + E I +G+ + +
Sbjct: 28 LKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHVVTEKAE 77
Score = 48.6 bits (116), Expect = 8e-09
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQVDGK 71
GV + V+ A + + YNP S +L EA+ +G+ K+
Sbjct: 101 GVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGEQDS 147
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR
{Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A
2ggp_B
Length = 72
Score = 47.2 bits (113), Expect = 5e-09
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 20 IGARTGVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQ 67
+ A GV +SL E +TY+ V+ + E I D GFD ++ +
Sbjct: 24 LRALKGVTKCDISLVTNECQVTYDNE-VTADSIKEIIEDCGFDCEILR 70
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones,
hydrolase; NMR {Synechocystis SP}
Length = 71
Score = 44.2 bits (105), Expect = 8e-08
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFD 62
GV V++A +TY+P VS + E I +G+
Sbjct: 30 GVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYT 67
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold,
beta-alpha-beta-BETA-alpha-beta, struc genomics,
hydrolase, membrane protein; NMR {Synechocystis SP}
PDB: 2ofh_X
Length = 111
Score = 42.9 bits (101), Expect = 6e-07
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQVD 69
GV V++A +TY+P VS + E I +G+ +
Sbjct: 35 GVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTLAEPKSS 79
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab
fold, hydrolase; NMR {Bacillus subtilis} SCOP:
d.58.17.1 PDB: 1oq3_A 1oq6_A
Length = 76
Score = 41.2 bits (97), Expect = 1e-06
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFD 62
GV V+LA + + Y+P + E I +G+
Sbjct: 33 GVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYH 70
>1jww_A Potential copper-transporting ATPase;
beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR
{Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Length = 80
Score = 40.8 bits (96), Expect = 2e-06
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQVD 69
GV + V+ A + + YNP S +L EA+ +G+ K+
Sbjct: 30 GVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGEQ 74
>1yg0_A COP associated protein; open-faced beta-sandwich, missing
C-terminal beta-sheet, Met transport; NMR {Helicobacter
pylori}
Length = 66
Score = 39.5 bits (93), Expect = 5e-06
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 20 IGARTGVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFD 62
+G GV I VS+ K V+ ++ + + EA+ D G +
Sbjct: 23 VGEIEGVSFIDVSVEKKSVVVEFDAP-ATQDLIKEALLDAGQE 64
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase,
Cu(I)-binding, trafficking; 1.80A {Synechocystis SP}
PDB: 2gcf_A
Length = 71
Score = 37.3 bits (87), Expect = 4e-05
Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQ 67
GV S +V+ A ++AV++Y+ +P+ L++A+ G+ +V +
Sbjct: 30 GVQSCQVNFALEQAVVSYHGE-TTPQILTDAVERAGYHARVLK 71
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 39.4 bits (93), Expect = 4e-05
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFD 62
GV+ ++V+LA + A I ++ + + + I D+G+
Sbjct: 29 GVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGYG 66
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist
metal-binding, oxidoreductase; NMR {Pseudomonas
aeruginosa} PDB: 2kt3_A
Length = 69
Score = 36.5 bits (85), Expect = 8e-05
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQ 67
GV S VS A + P SP L+ A+ +G+ +
Sbjct: 27 GVQSALVSYPKGTAQLAIVPG-TSPDALTAAVAGLGYKATLAD 68
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB:
2rog_A
Length = 66
Score = 34.2 bits (79), Expect = 6e-04
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKV 65
GV+ ++VSL EA++ PK L +A+ + G+ +V
Sbjct: 27 GVEKVEVSLEKGEALVEGT---ADPKALVQAVEEEGYKAEV 64
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.010
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 29/55 (52%)
Query: 35 DKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQVDGKPYVPETNVNTSADGLAFK 89
+K+A+ K+L ++ K Y + SA LA K
Sbjct: 18 EKQAL----------KKLQASL--------------KLYADD-----SAPALAIK 43
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha-
beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1
PDB: 1mwz_A
Length = 73
Score = 30.5 bits (69), Expect = 0.021
Identities = 8/43 (18%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQ 67
GV+ ++V A ++ V+ + + + ++ A+ G+ + Q
Sbjct: 30 GVNQVQVLFATEKLVVDADNDIRA--QVESALQKAGYSLRDEQ 70
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology,
protein structure initiative, joint for structural
genomics, JCSG; NMR {Thermotoga maritima}
Length = 67
Score = 29.8 bits (67), Expect = 0.030
Identities = 7/43 (16%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQ 67
GV + +VS+ +K+ V+ + + + + ++ + + Q
Sbjct: 27 GVKNYEVSVEEKKVVVETE----NLDSVLKKLEEIDYPVESYQ 65
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 27.1 bits (60), Expect = 0.51
Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKV 65
GV ++V L D+ ++ + +E+ + G +
Sbjct: 45 GVQDVEVHLEDQMVLVHTT---LPSQEVQALLEGTGRQAVL 82
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics,
structural genomics consortium, SGC, RH fold; 2.50A
{Homo sapiens}
Length = 302
Score = 27.2 bits (61), Expect = 0.80
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 27 DSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQVDGKPYVPETNVN 80
S V L + Y ++VS + ++EA+ + +D Y+P+ +
Sbjct: 7 HSSGVDLGTENL---YFQSMVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRD 57
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 2.7
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 12/45 (26%)
Query: 30 KVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQVDGKPYV 74
K SL +K+ PKE + +I + + KV +++ + +
Sbjct: 413 KYSLVEKQ-----------PKESTISIPSIYLELKV-KLENEYAL 445
>1nnf_A Iron-utilization periplasmic protein; iron-binding protein,
EDTA-Fe-protein complex, metal binding protein; HET:
EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB:
1mrp_A 1d9v_A 3od7_A 3odb_A 1qvs_A 2o6a_A 2o68_A 3kn8_A
3kn7_A 2o69_A 1qw0_A 1o7t_A* 1xc1_A* 1r1n_A* 1d9y_A
Length = 309
Score = 25.0 bits (55), Expect = 3.7
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 39 VITYNPTLVSPKELSEAIYD 58
V+ Y+ T +S K++ +++ D
Sbjct: 104 VVVYDHTKLSEKDMEKSVLD 123
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A
{Saccharomyces cerevisiae} PDB: 3ns5_A
Length = 100
Score = 24.3 bits (53), Expect = 4.4
Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 59 MGFDTKVTQVDGKPYVPE 76
+G D + V+G P +P
Sbjct: 3 LGSDQYIV-VNGAPVIPS 19
>1xvx_A YFUA; periplasmic iron binding protein, iron binding protein; 1.53A
{Yersinia enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A*
Length = 312
Score = 24.6 bits (54), Expect = 5.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 39 VITYNPTLVSPKELSEAIYDM 59
V YNP +S EL ++I D+
Sbjct: 107 VFVYNPEKISEAELPKSIMDL 127
>1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia
haemolytica} SCOP: c.94.1.1 PDB: 1si0_A 1si1_A
Length = 320
Score = 23.9 bits (52), Expect = 8.7
Identities = 4/21 (19%), Positives = 6/21 (28%)
Query: 39 VITYNPTLVSPKELSEAIYDM 59
VI + V D+
Sbjct: 104 VIYTSKDRVGKLPAGFDYLDL 124
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.129 0.350
Gapped
Lambda K H
0.267 0.0802 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,320,024
Number of extensions: 66863
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 45
Length of query: 93
Length of database: 6,701,793
Length adjustment: 60
Effective length of query: 33
Effective length of database: 5,026,533
Effective search space: 165875589
Effective search space used: 165875589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.3 bits)