RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13022
(93 letters)
>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP
{Ralstonia metallidurans CH34 [TaxId: 266264]}
Length = 72
Score = 47.8 bits (114), Expect = 1e-09
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQ 67
GV + V+ ++AV+T++ S ++L++A D G+ + V Q
Sbjct: 30 GVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSVKQ 72
>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae
[TaxId: 1354]}
Length = 68
Score = 47.5 bits (113), Expect = 1e-09
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKV 65
GV +KV L ++AV+ ++ V E+ +AI ++G+ +V
Sbjct: 27 GVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEV 67
>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 47.1 bits (112), Expect = 2e-09
Identities = 25/45 (55%), Positives = 29/45 (64%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQVD 69
GV IKVSL +K A I Y+P L +PK L EAI DMGFD + D
Sbjct: 35 GVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHNPD 79
>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 46.7 bits (111), Expect = 3e-09
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 20 IGARTGVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKV 65
I + GV SI+VSLA+ + Y+P L SP+ L AI DMGFD +
Sbjct: 25 ISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATL 70
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type
ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}
Length = 72
Score = 44.4 bits (105), Expect = 3e-08
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFD 62
GV V+LA + + Y+P + E I +G+
Sbjct: 33 GVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYH 70
>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating
P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId:
1423]}
Length = 79
Score = 44.1 bits (104), Expect = 4e-08
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKV 65
GV + V+ A + + YNP S +L EA+ +G+ K+
Sbjct: 29 GVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKL 69
>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis,
CopZ [TaxId: 1423]}
Length = 69
Score = 44.0 bits (104), Expect = 4e-08
Identities = 12/38 (31%), Positives = 25/38 (65%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFD 62
GV ++ V+L + ++++ VS K++++AI D G+D
Sbjct: 29 GVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYD 66
>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 72
Score = 42.4 bits (100), Expect = 2e-07
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQ 67
GV +SL E +TY+ V+ + E I D GFD ++ +
Sbjct: 29 GVTKCDISLVTNECQVTYDNE-VTADSIKEIIEDCGFDCEILR 70
>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 39.6 bits (92), Expect = 3e-06
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQ 67
GV IKVSL ++EA I Y P L+S +E+ + I MGF V +
Sbjct: 36 GVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVKK 78
>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 73
Score = 37.1 bits (86), Expect = 2e-05
Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQ 67
GV+ ++V A ++ V+ + ++ A+ G+ + Q
Sbjct: 30 GVNQVQVLFATEKLVVDADND--IRAQVESALQKAGYSLRDEQ 70
>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide
dismutase, N-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 72
Score = 32.1 bits (73), Expect = 0.002
Identities = 6/43 (13%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 20 IGARTGVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFD 62
+ G++S+ + + + + V+P + + + G D
Sbjct: 27 LKNVPGINSLNFDIEQQIMSVESS---VAPSTIINTLRNCGKD 66
>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc
6803, Scatx1 [TaxId: 1148]}
Length = 64
Score = 31.1 bits (70), Expect = 0.003
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 25 GVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTK 64
+++V L K+ IT + ++L AI G + +
Sbjct: 28 AQATVQVDLTSKKVTITSA---LGEEQLRTAIASAGHEVE 64
>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1)
{Human (Homo sapiens), HAH1 [TaxId: 9606]}
Length = 66
Score = 28.3 bits (63), Expect = 0.035
Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 3/43 (6%)
Query: 23 RTGVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKV 65
+ G + L +K+ I S L + G
Sbjct: 24 KLGGVKYDIDLPNKKVCIESE---HSMDTLLATLKKTGKTVSY 63
>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId:
9913]}
Length = 149
Score = 27.9 bits (61), Expect = 0.13
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 44 PTLVSPKELSEAIYDMGFDTKVTQVDGKPYVPETN 78
LVS K L+E++ + +D Y P T
Sbjct: 7 RALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTR 41
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 293
Score = 27.0 bits (59), Expect = 0.35
Identities = 5/54 (9%), Positives = 20/54 (37%)
Query: 3 YEVFLPLLDKSSSKSSMIGARTGVDSIKVSLADKEAVITYNPTLVSPKELSEAI 56
+ ++ + A G++ +V + + +T++ L ++ +
Sbjct: 34 KWLLPVIISPITDPLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGL 87
>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 164
Score = 25.4 bits (55), Expect = 1.1
Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 2/56 (3%)
Query: 19 MIGARTGVDSIKVSLADKEAVITYNPTLVSPKELSEAIYDMGFDTKVTQVDGKPYV 74
++G G KV I + P+ + E T ++
Sbjct: 3 VVGLDVGYGDTKVI-GVDGKRIIF-PSRWAVTETESWGIGGKIPVLSTDGGQTKFI 56
>d1j3ea_ d.228.1.1 (A:) Replication modulator SeqA, C-terminal
DNA-binding domain {Escherichia coli [TaxId: 562]}
Length = 115
Score = 23.2 bits (50), Expect = 5.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 54 EAIYDMGFDTKVTQVDGKPYVPETNVNTS 82
+ + G TK V G PY TN NT
Sbjct: 60 QTLLKNGNQTKPKHVPGTPYWVITNTNTG 88
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.129 0.350
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 306,137
Number of extensions: 11098
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 19
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.1 bits)