BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13024
         (75 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
           Determined By Nmr Molecular Fragment Replacement
          Length = 303

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 3   ATVFVQPLDLIKNRMQLDK----AKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATY 58
           A    QP D++K R Q        + Y+S+++A+ TI R+EG+  ++ G S  + R A  
Sbjct: 118 AVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIV 177

Query: 59  TTTRLGTYNLL 69
               L TY+L+
Sbjct: 178 NCAELVTYDLI 188



 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 10/69 (14%)

Query: 9  PLDLIKNRMQLD----------KAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATY 58
          PLD  K R+Q+            + +YR  +    T++R EG  ++YNGL AGL RQ ++
Sbjct: 21 PLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSF 80

Query: 59 TTTRLGTYN 67
           + R+G Y+
Sbjct: 81 ASVRIGLYD 89



 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 30/66 (45%)

Query: 4   TVFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRL 63
           TV   P+D++K R       +Y S+     T+LRKEG  A Y G     LR  ++     
Sbjct: 217 TVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMF 276

Query: 64  GTYNLL 69
            TY  L
Sbjct: 277 VTYEQL 282


>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
           Carboxyatractyloside
 pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
          Length = 297

 Score = 31.2 bits (69), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 5   VFVQPLDLIKNRMQLDKAK-----EYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYT 59
            FV PLD  + R+  D  K     E+       T I + +G+  +Y G +  +     Y 
Sbjct: 128 CFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYR 187

Query: 60  TTRLGTYN 67
               G Y+
Sbjct: 188 AAYFGVYD 195


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.134    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,764,144
Number of Sequences: 62578
Number of extensions: 48758
Number of successful extensions: 112
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 108
Number of HSP's gapped (non-prelim): 5
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)