Query psy13024
Match_columns 75
No_of_seqs 111 out of 1387
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 17:24:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00153 Mito_carr: Mitochondr 99.9 2.8E-22 6.1E-27 102.9 7.3 74 2-75 17-93 (95)
2 KOG0764|consensus 99.9 1.6E-21 3.4E-26 115.0 6.4 73 2-74 18-95 (299)
3 KOG0752|consensus 99.9 8.5E-22 1.8E-26 118.7 4.7 71 1-71 138-209 (320)
4 KOG0752|consensus 99.8 1.8E-21 3.9E-26 117.3 4.9 74 1-74 235-314 (320)
5 PTZ00169 ADP/ATP transporter o 99.8 4.6E-21 9.9E-26 115.2 5.2 72 2-74 223-300 (300)
6 PTZ00169 ADP/ATP transporter o 99.8 2.2E-20 4.8E-25 112.2 7.6 73 2-74 126-202 (300)
7 KOG0764|consensus 99.8 4.1E-21 8.9E-26 113.2 4.2 74 1-74 218-292 (299)
8 KOG0754|consensus 99.8 1.9E-20 4.2E-25 109.0 3.1 71 4-74 22-98 (294)
9 KOG0753|consensus 99.8 1.4E-20 3E-25 111.6 2.2 73 2-74 238-313 (317)
10 PTZ00168 mitochondrial carrier 99.8 1.3E-19 2.7E-24 107.3 4.8 69 2-73 97-166 (259)
11 KOG0759|consensus 99.8 2.9E-19 6.2E-24 105.3 6.1 73 2-74 210-282 (286)
12 KOG0758|consensus 99.8 3.8E-19 8.2E-24 105.6 5.8 73 2-74 222-295 (297)
13 KOG0751|consensus 99.8 1.9E-19 4.1E-24 113.1 4.7 74 1-74 358-438 (694)
14 KOG0758|consensus 99.8 5.4E-20 1.2E-24 109.1 2.0 73 2-74 26-98 (297)
15 KOG0759|consensus 99.8 1.5E-18 3.3E-23 102.3 7.3 72 2-74 16-87 (286)
16 PTZ00168 mitochondrial carrier 99.8 1.6E-18 3.5E-23 102.6 5.9 64 2-70 192-255 (259)
17 KOG0768|consensus 99.8 1.2E-18 2.5E-23 104.5 5.2 70 2-74 149-218 (323)
18 KOG0757|consensus 99.8 3.9E-19 8.4E-24 104.9 2.8 73 2-75 140-215 (319)
19 KOG0757|consensus 99.8 8.8E-19 1.9E-23 103.4 4.2 72 2-74 246-317 (319)
20 KOG0768|consensus 99.7 4.3E-18 9.3E-23 102.1 6.1 73 2-74 240-313 (323)
21 KOG0761|consensus 99.7 8.1E-19 1.8E-23 105.3 2.6 74 2-75 33-147 (361)
22 KOG0760|consensus 99.7 1.4E-18 3.1E-23 102.2 2.5 72 2-74 124-195 (302)
23 KOG0762|consensus 99.7 2.5E-18 5.5E-23 100.2 3.2 69 3-71 118-189 (311)
24 KOG0751|consensus 99.7 3.2E-18 6.9E-23 107.6 3.5 72 3-74 552-626 (694)
25 KOG0753|consensus 99.7 2.2E-18 4.8E-23 102.3 2.6 72 2-73 32-112 (317)
26 KOG0769|consensus 99.7 2E-17 4.2E-22 97.5 6.1 73 2-74 16-92 (308)
27 KOG0762|consensus 99.7 1.3E-17 2.8E-22 97.3 3.0 73 1-74 213-285 (311)
28 KOG0756|consensus 99.7 9.8E-18 2.1E-22 99.7 1.9 72 3-74 223-295 (299)
29 KOG0761|consensus 99.7 3.7E-17 8E-22 98.3 4.1 72 2-74 169-249 (361)
30 KOG0760|consensus 99.7 1.2E-16 2.7E-21 94.1 5.3 71 4-74 31-103 (302)
31 KOG0770|consensus 99.6 3E-16 6.4E-21 92.7 4.7 72 2-73 140-220 (353)
32 KOG0765|consensus 99.6 1.7E-16 3.7E-21 94.3 3.2 72 2-74 259-330 (333)
33 KOG0767|consensus 99.6 3.9E-16 8.4E-21 92.4 3.3 71 2-73 148-218 (333)
34 KOG0766|consensus 99.6 3.3E-16 7.2E-21 90.6 2.9 69 2-71 226-294 (297)
35 KOG0754|consensus 99.6 1.8E-16 3.9E-21 92.6 1.3 71 3-73 120-192 (294)
36 KOG0770|consensus 99.6 3.1E-16 6.6E-21 92.7 0.5 73 3-75 46-120 (353)
37 KOG0036|consensus 99.6 2.5E-15 5.5E-20 92.8 3.6 70 2-73 391-460 (463)
38 KOG0767|consensus 99.6 3.9E-16 8.4E-21 92.3 -0.0 69 5-74 54-122 (333)
39 KOG0765|consensus 99.6 3.4E-15 7.3E-20 88.8 3.8 68 5-73 49-118 (333)
40 KOG0749|consensus 99.5 1.8E-14 3.8E-19 85.0 5.4 71 2-73 226-298 (298)
41 KOG0036|consensus 99.5 4.5E-15 9.7E-20 91.7 2.9 72 2-73 295-366 (463)
42 KOG0749|consensus 99.5 2.1E-16 4.5E-21 93.1 -2.9 72 3-74 129-205 (298)
43 KOG0750|consensus 99.5 8.7E-15 1.9E-19 86.1 3.7 60 2-61 224-285 (304)
44 KOG0763|consensus 99.5 1.4E-14 3.1E-19 83.9 2.9 69 3-74 230-298 (301)
45 KOG0755|consensus 99.5 3.9E-15 8.4E-20 87.2 0.4 74 1-74 139-219 (320)
46 KOG0756|consensus 99.5 9.6E-15 2.1E-19 87.1 1.7 72 4-75 123-199 (299)
47 KOG0755|consensus 99.5 9.7E-14 2.1E-18 81.4 4.8 69 4-72 243-312 (320)
48 KOG0766|consensus 99.5 5.3E-14 1.1E-18 81.6 3.6 67 2-71 27-93 (297)
49 KOG0763|consensus 99.4 1.7E-13 3.7E-18 79.5 3.5 69 5-74 31-99 (301)
50 KOG0750|consensus 99.4 3.4E-13 7.4E-18 79.5 3.2 69 5-73 128-199 (304)
51 KOG0769|consensus 99.4 3.3E-12 7.1E-17 75.7 6.8 70 2-71 217-296 (308)
52 KOG2745|consensus 99.1 1.5E-10 3.2E-15 68.9 3.9 57 2-58 149-208 (321)
53 KOG1519|consensus 99.1 7.7E-10 1.7E-14 63.8 6.2 68 5-72 227-296 (297)
54 KOG2954|consensus 98.9 6.2E-09 1.3E-13 63.7 7.0 60 3-62 290-366 (427)
55 KOG2745|consensus 97.7 0.00014 3E-09 44.1 5.6 56 4-59 31-101 (321)
56 KOG1519|consensus 97.7 2.9E-05 6.3E-10 45.2 1.8 67 3-70 131-198 (297)
57 KOG2954|consensus 86.1 0.53 1.1E-05 29.9 1.6 52 4-55 81-137 (427)
58 PRK02944 OxaA-like protein pre 66.1 8.8 0.00019 23.3 2.8 38 29-71 114-151 (255)
59 PF02096 60KD_IMP: 60Kd inner 63.7 19 0.0004 20.7 3.8 40 28-72 53-92 (198)
60 PF00473 CRF: Corticotropin-re 61.5 5.8 0.00012 17.2 1.0 16 5-20 5-20 (39)
61 PF12594 DUF3764: Protein of u 54.9 3.7 8.1E-05 20.9 -0.1 18 33-50 27-44 (86)
62 COG1993 PII-like signaling pro 54.1 9 0.0002 20.4 1.2 24 26-49 22-47 (109)
63 smart00039 CRF corticotropin-r 53.9 13 0.00028 16.2 1.5 16 5-20 6-21 (40)
64 PF11247 DUF2675: Protein of u 53.7 14 0.00031 19.3 1.9 34 41-74 42-75 (98)
65 PF02939 UcrQ: UcrQ family; I 53.4 29 0.00063 17.4 3.2 29 44-72 37-65 (80)
66 PHA02759 virus coat protein VP 51.3 46 0.00099 19.6 3.8 42 33-74 59-107 (245)
67 COG1286 CvpA Uncharacterized m 49.8 40 0.00087 19.5 3.5 33 38-70 14-46 (182)
68 PRK01622 OxaA-like protein pre 47.3 27 0.00059 21.2 2.7 38 30-71 121-158 (256)
69 COG4297 Uncharacterized protei 46.3 10 0.00022 21.2 0.7 20 30-49 35-54 (163)
70 PF08887 GAD-like: GAD-like do 46.2 12 0.00026 19.9 0.9 23 27-49 31-53 (109)
71 PF14514 TetR_C_9: Transcripti 44.3 53 0.0011 17.8 4.7 38 28-65 52-89 (129)
72 COG0650 HyfC Formate hydrogenl 40.2 31 0.00067 21.8 2.2 29 11-39 29-58 (309)
73 COG5499 Predicted transcriptio 39.8 51 0.0011 17.8 2.7 13 8-20 60-72 (120)
74 PRK06926 flagellar motor prote 37.1 41 0.00089 20.8 2.4 44 2-45 50-102 (271)
75 PRK05973 replicative DNA helic 37.0 59 0.0013 19.7 3.0 38 6-43 3-40 (237)
76 PRK03449 putative inner membra 36.9 72 0.0016 20.1 3.4 38 29-71 83-120 (304)
77 PRK02654 putative inner membra 36.6 78 0.0017 20.7 3.5 37 28-70 81-117 (375)
78 PF07840 FadR_C: FadR C-termin 36.1 42 0.00092 19.2 2.2 35 40-74 96-130 (164)
79 PF06837 Fijivirus_P9-2: Fijiv 35.7 27 0.00058 20.6 1.4 13 7-19 15-27 (214)
80 PF03201 HMD: H2-forming N5,N1 34.9 46 0.001 17.4 2.0 43 5-55 32-74 (98)
81 PF10126 Nit_Regul_Hom: Unchar 34.6 18 0.00039 19.3 0.5 19 33-51 20-42 (110)
82 TIGR02757 conserved hypothetic 34.2 13 0.00028 22.4 -0.1 23 31-53 149-172 (229)
83 PRK01315 putative inner membra 33.7 1.1E+02 0.0023 19.7 3.8 38 29-71 93-130 (329)
84 PRK09110 flagellar motor prote 33.2 56 0.0012 20.4 2.5 43 3-45 44-98 (283)
85 COG3046 Uncharacterized protei 33.1 67 0.0014 21.6 2.9 17 4-20 270-286 (505)
86 cd08903 START_STARD5-like Lipi 32.5 88 0.0019 18.2 3.2 30 46-75 178-207 (208)
87 TIGR03592 yidC_oxa1_cterm memb 32.2 1E+02 0.0022 17.6 3.4 39 28-71 52-90 (181)
88 PF13384 HTH_23: Homeodomain-l 32.1 16 0.00035 15.8 0.1 17 28-44 33-49 (50)
89 cd08906 START_STARD3-like Chol 31.7 97 0.0021 18.1 3.3 29 46-74 179-207 (209)
90 PRK06743 flagellar motor prote 30.2 64 0.0014 19.8 2.4 43 3-45 43-94 (254)
91 PRK11525 dinD DNA-damage-induc 30.2 41 0.00088 21.0 1.6 21 34-54 163-183 (279)
92 PF13518 HTH_28: Helix-turn-he 30.0 57 0.0012 13.9 2.0 20 27-46 27-46 (52)
93 COG4043 Preprotein translocase 28.3 60 0.0013 17.2 1.8 22 28-49 56-77 (111)
94 PRK12482 flagellar motor prote 27.6 1.5E+02 0.0032 18.6 3.7 44 2-45 43-98 (287)
95 PF06812 ImpA-rel_N: ImpA-rela 27.2 37 0.0008 15.7 0.9 19 32-50 27-45 (62)
96 cd08905 START_STARD1-like Chol 27.0 1.3E+02 0.0028 17.6 3.2 29 46-74 179-207 (209)
97 PF05415 Peptidase_C36: Beet n 26.7 57 0.0012 16.9 1.5 18 3-20 15-32 (104)
98 PF01019 G_glu_transpept: Gamm 25.8 1.5E+02 0.0033 20.0 3.7 38 27-65 161-199 (510)
99 PF08359 TetR_C_4: YsiA-like p 25.1 1.2E+02 0.0025 15.9 5.1 43 28-70 69-112 (133)
100 PHA01749 coat protein 25.1 1.2E+02 0.0026 16.1 4.0 44 11-55 39-86 (134)
101 PF07037 DUF1323: Putative tra 24.3 67 0.0015 17.5 1.6 15 32-46 101-115 (122)
102 COG1696 DltB Predicted membran 24.1 1.8E+02 0.0039 19.4 3.7 35 36-70 312-346 (425)
103 cd08902 START_STARD4-like Lipi 23.5 1.3E+02 0.0028 18.0 2.8 28 46-73 174-201 (202)
104 PF00440 TetR_N: Bacterial reg 23.1 78 0.0017 13.5 1.5 15 29-43 2-16 (47)
105 PF13467 RHH_4: Ribbon-helix-h 22.9 96 0.0021 15.0 1.9 15 27-41 21-35 (67)
106 COG0096 RpsH Ribosomal protein 22.6 1.2E+02 0.0026 16.8 2.4 38 6-43 3-47 (132)
107 PF06043 Reo_P9: Reovirus P9-l 22.4 95 0.0021 19.7 2.2 34 3-41 239-272 (333)
108 PF09674 DUF2400: Protein of u 22.3 29 0.00062 21.0 -0.0 23 31-53 151-175 (232)
109 PF09958 DUF2192: Uncharacteri 22.0 69 0.0015 19.5 1.5 26 25-51 28-53 (231)
110 KOG1484|consensus 21.9 65 0.0014 20.8 1.4 39 7-45 255-295 (354)
111 cd08816 CARD_RIG-I_1 Caspase a 21.8 1.2E+02 0.0025 15.6 2.1 12 58-69 76-87 (89)
112 smart00263 LYZ1 Alpha-lactalbu 21.7 83 0.0018 17.2 1.7 16 28-43 91-106 (127)
113 COG4075 Uncharacterized conser 21.7 46 0.001 17.5 0.6 20 32-51 19-42 (110)
114 COG3084 Uncharacterized protei 21.4 1.3E+02 0.0028 15.1 3.2 26 21-46 18-43 (88)
115 PLN02332 membrane bound O-acyl 21.0 2.7E+02 0.0058 18.6 4.8 40 33-72 345-384 (465)
116 PRK02463 OxaA-like protein pre 20.9 1.7E+02 0.0037 18.5 3.1 26 30-55 121-147 (307)
117 PF08300 HCV_NS5a_1a: Hepatiti 20.6 20 0.00043 17.1 -0.8 11 38-48 7-17 (62)
No 1
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ]. Such proteins include: ADP, ATP carrier protein (ADP/ATP translocase); 2-oxoglutarate/malate carrier protein; phosphate carrier protein; tricarboxylate transport protein (or citrate transport protein); Graves disease carrier protein; yeast mitochondrial proteins MRS3 and MRS4; yeast mitochondrial FAD carrier protein; and many others. Structurally, these proteins can consist of up to three tandem repeats of a domain of approximately 100 residues, each domain containing two transmembrane regions.; PDB: 2LCK_A 2C3E_A 1OKC_A.
Probab=99.88 E-value=2.8e-22 Score=102.93 Aligned_cols=74 Identities=32% Similarity=0.558 Sum_probs=66.3
Q ss_pred chhhccccHHHHHHHHHh--c-CCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHhC
Q psy13024 2 AATVFVQPLDLIKNRMQL--D-KAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFKA 75 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~--~-~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 75 (75)
++.++++|+|++|+|+|. . ....+.+.++++++++++||++|+|+|+.+++++.+|..+++|++||.+++.+++
T Consensus 17 ~~~~~~~Pld~ik~~~q~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (95)
T PF00153_consen 17 ISTLVTYPLDTIKTRMQSESPSGKQPYQGVWQCLRKIYKEEGIRGLYRGFGPSLLRSIPYTAIYFGLYEYLKRLLSK 93 (95)
T ss_dssp HHHHHCHHHHHHHHHHHCCSCCCCSS-SSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHHHhHhhcccccccccccccccccccccchhhhhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999992 2 3467889999999999999999999999999999999999999999999998863
No 2
>KOG0764|consensus
Probab=99.85 E-value=1.6e-21 Score=114.98 Aligned_cols=73 Identities=34% Similarity=0.489 Sum_probs=68.0
Q ss_pred chhhccccHHHHHHHHHhc-----CCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 2 AATVFVQPLDLIKNRMQLD-----KAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~-----~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
+++++++|+|++|+|+|++ ..+.|.++.++++.|++.||++|||+|+.|++++..+.+++||.+||.+|+.+.
T Consensus 18 ~stl~vhPlDl~K~R~qa~~g~~~~~~~y~g~~~~~~tI~r~eG~rGLY~Gl~P~v~G~~~sWgiYF~~Y~~~K~~~~ 95 (299)
T KOG0764|consen 18 ASTLVVHPLDLVKIRFQASDGRTSLRPAYKGIFGALKTIFRSEGLRGLYRGLSPNVLGSAPSWGLYFFFYDFLKSFIT 95 (299)
T ss_pred hhhhhccchhHhhhhhhhccCccccchhhccHHHHHHHHHHhhhHHHHhccCcHHHHhchhhHHHHHHHHHHHHHHHh
Confidence 5778999999999999998 346788999999999999999999999999999999999999999999999864
No 3
>KOG0752|consensus
Probab=99.85 E-value=8.5e-22 Score=118.75 Aligned_cols=71 Identities=37% Similarity=0.608 Sum_probs=66.5
Q ss_pred CchhhccccHHHHHHHHHhcCCC-CCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHH
Q psy13024 1 MAATVFVQPLDLIKNRMQLDKAK-EYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLN 71 (75)
Q Consensus 1 ~~~~~~~~P~d~~k~~~q~~~~~-~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~ 71 (75)
+++.++++|+|++|+|+-.+++. .|.++.+++++|+++||++|||||+.|++++..|+.++.|.+||.+++
T Consensus 138 ~~a~~~tyPLDlvRtRLa~q~~~~~y~~l~~a~~~I~~~eGi~gfYrGl~ptllgi~Pyag~~F~~Yd~lk~ 209 (320)
T KOG0752|consen 138 MTATLATYPLDLLRTRLAVQGELKVYRGLLHAFKTIYREEGIRGFYRGLGPTLLGIAPYAGINFFAYDTLKK 209 (320)
T ss_pred HHHHHhcCcHHHhhhheeeecccccCCcHHHHHHHHHHhcchhhhhcCcchhhheehhhhhhHHHHHHHHHH
Confidence 46789999999999999988533 699999999999999999999999999999999999999999999998
No 4
>KOG0752|consensus
Probab=99.84 E-value=1.8e-21 Score=117.32 Aligned_cols=74 Identities=32% Similarity=0.581 Sum_probs=67.2
Q ss_pred CchhhccccHHHHHHHHHhcCC------CCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 1 MAATVFVQPLDLIKNRMQLDKA------KEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 1 ~~~~~~~~P~d~~k~~~q~~~~------~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
+++.++++|+|++|.|||..+- .++.+++|++++++++||+.|||||+.|++++.+|..++.|.+||.+|++++
T Consensus 235 ~~aqti~yPlD~vRrrmQ~~~~~~~~~~~~~~~~~~~~~~i~~~EG~~gLYkGl~p~~lK~~P~~ai~F~~Ye~~k~~l~ 314 (320)
T KOG0752|consen 235 AVAQTITYPLDTVRRRMQLGGLKYFGGGFRYKGVLDAFRQIVKTEGVKGLYKGLSPNLLKVVPSVAISFTTYEILKDLLR 314 (320)
T ss_pred HHHhhhcccHHHHHHHHhccCccccccccccccHHHHHHHHHHHhhhhhhhccccHHHHHhcccceeeeehHHHHHHHhh
Confidence 3678999999999999999842 3446899999999999999999999999999999999999999999998775
No 5
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional
Probab=99.83 E-value=4.6e-21 Score=115.21 Aligned_cols=72 Identities=25% Similarity=0.424 Sum_probs=64.3
Q ss_pred chhhccccHHHHHHHHHhcC------CCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 2 AATVFVQPLDLIKNRMQLDK------AKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~------~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
+++++++|+|++|+|+|.+. ...|++.++++++++++||++|||+|+.+++++ .+.++++|.+||.+++.++
T Consensus 223 ~a~~~t~P~dvvktRlq~~~~~~~~~~~~y~~~~~~~~~i~~~eG~~gly~G~~~~~~~-~~~~~~~f~~ye~~k~~~~ 300 (300)
T PTZ00169 223 LAGLISYPFDTVRRRMMMMSGRKAKSEIQYTGTLDCWKKILKNEGLGGFFKGAWANVLR-GAGGALVLVFYDELQKLLK 300 (300)
T ss_pred HHHHHcCcHHHHHHHHHHhcCcccCCCcccCcHHHHHHHHHHHhchhHhhccchHHHHh-hcccceeehHHHHHHHHhC
Confidence 46789999999999999862 235889999999999999999999999999999 6788999999999998763
No 6
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional
Probab=99.83 E-value=2.2e-20 Score=112.24 Aligned_cols=73 Identities=19% Similarity=0.428 Sum_probs=66.3
Q ss_pred chhhccccHHHHHHHHHhcC----CCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 2 AATVFVQPLDLIKNRMQLDK----AKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~----~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
++.++++|+|++|+|+|.+. ...|.++++++++++++||++|||+|+.+++++.+|.++++|.+||.+++.+.
T Consensus 126 ~~~~~~~P~d~vk~r~q~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~ 202 (300)
T PTZ00169 126 SSLLIVYPLDFARTRLASDIGKGGDREFTGLFDCLMKISKQTGFLSLYQGFGVSVQGIIVYRGAYFGLYDSAKALLF 202 (300)
T ss_pred HHHHHhChHHHHHHHHHhhcccCccccCCCHHHHHHHHHHhhchHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999872 23578999999999999999999999999999999999999999999998763
No 7
>KOG0764|consensus
Probab=99.83 E-value=4.1e-21 Score=113.22 Aligned_cols=74 Identities=20% Similarity=0.371 Sum_probs=69.1
Q ss_pred CchhhccccHHHHHHHHHhcC-CCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 1 MAATVFVQPLDLIKNRMQLDK-AKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 1 ~~~~~~~~P~d~~k~~~q~~~-~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
+++.+++||.+++|+|||.++ ...+.+.++++++++++||++|+|+|+.++++|.+|.+++.|..||..++++.
T Consensus 218 v~Ast~TYP~qVlRtRLQ~~~~~~~~~~~~~lIk~t~r~eG~~GfYkG~~~nLvR~vPA~~ITF~vyEnv~~~L~ 292 (299)
T KOG0764|consen 218 VFASTLTYPHQVLRTRLQDQSDNPRYRGVFDLIKKTWRNEGFRGFYKGLATNLVRTVPAACITFLVYENVKHFLV 292 (299)
T ss_pred HHHHHhcchHHHHHHHHHhcccCcccccHHHHHHHHHHHhchhhHHHHhHHHHhhccccceeeeehHHHHHHHHh
Confidence 367899999999999999984 57788999999999999999999999999999999999999999999998774
No 8
>KOG0754|consensus
Probab=99.80 E-value=1.9e-20 Score=108.99 Aligned_cols=71 Identities=25% Similarity=0.497 Sum_probs=65.8
Q ss_pred hhccccHHHHHHHHHhc------CCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 4 TVFVQPLDLIKNRMQLD------KAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 4 ~~~~~P~d~~k~~~q~~------~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
.++.||+||+|||+|.+ +...|++..||+.+++++||+.++|||+.|.++...|-.++.|..||+.|..+.
T Consensus 22 v~~myPLDVVKTRmQlq~~~~~~~~~~Y~g~~Dc~~Ki~k~EG~s~lykGI~pPIl~EtPKRa~KF~~~eq~K~~F~ 98 (294)
T KOG0754|consen 22 VCLMYPLDVVKTRMQLQVTTPFGGEVHYNGVMDCLVKIVKNEGLSSLYKGILPPILMETPKRATKFLTNEQYKKLFQ 98 (294)
T ss_pred heeecchhhheeeeeeecccCCCCccccccHHHHHHHHHHhcchhhhhccCCCHHhhhcchhhhhhccHHHHHHHhc
Confidence 46889999999999998 246799999999999999999999999999999999999999999999998764
No 9
>KOG0753|consensus
Probab=99.80 E-value=1.4e-20 Score=111.59 Aligned_cols=73 Identities=27% Similarity=0.505 Sum_probs=68.3
Q ss_pred chhhccccHHHHHHHHHhcCC---CCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 2 AATVFVQPLDLIKNRMQLDKA---KEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~~---~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
++++++.|.||+|+|+.+|+. ..|++..||+.+++++||+..||+|+.|+++|..|-+.++|.+||++|++.-
T Consensus 238 ~aai~s~P~DVVKTRmMNqp~g~~~~Ykgs~DC~~k~v~~EG~~AlYKGF~Psw~RlGpWnvifwvtyEQlrr~~g 313 (317)
T KOG0753|consen 238 AAAILSSPVDVVKTRMMNQPPGRGGLYKGSLDCLIKTVKNEGFFALYKGFIPSWLRLGPWNVIFWVTYEQLRRLLG 313 (317)
T ss_pred HHHHhcCcHHHHHhhhccCCCCcCccccchHHHHHHHHHhcChHHHHccccccceecCCeeeeeeeeHHHHHHHhc
Confidence 567889999999999999965 6799999999999999999999999999999999999999999999998753
No 10
>PTZ00168 mitochondrial carrier protein; Provisional
Probab=99.79 E-value=1.3e-19 Score=107.32 Aligned_cols=69 Identities=17% Similarity=0.295 Sum_probs=63.7
Q ss_pred chhhccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHhhcHhH-hhccchHhHHHHHHHhhhHHhHHHHHHHHH
Q psy13024 2 AATVFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFA-MYNGLSAGLLRQATYTTTRLGTYNLLLNKF 73 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~~~~~~~~~~~~~~~~~~~G~~g-ly~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 73 (75)
+++++++|+|++|+|+|.+. +.+..+++++++++||++| +|+|+.++++|.+|+++++|.+||.+++.+
T Consensus 97 ~a~~~~~P~dvvKtRlQ~~~---~~~~~~~~~~i~~~eG~~g~~y~G~~~~l~r~~p~~~~~f~~ye~~k~~l 166 (259)
T PTZ00168 97 TACIVRLPFEIVKQNMQVSG---NISVLKTIYEITQREGLPSFLGKSYFVMIVREIPFDCIQYFLWETLKEKA 166 (259)
T ss_pred hhheeeChHHHHHHHHHhcC---CCcHHHHHHHHHHccCccccccchHHHHHHHhcChheeehhHHHHHHHHH
Confidence 56789999999999999973 4689999999999999997 689999999999999999999999999876
No 11
>KOG0759|consensus
Probab=99.79 E-value=2.9e-19 Score=105.34 Aligned_cols=73 Identities=27% Similarity=0.466 Sum_probs=68.5
Q ss_pred chhhccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 2 AATVFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
+++++++|+|++|||+|+.....|++.+|++.++.|+||+.++|+|+.|.+.|.+|.+.+.|.++|++++.+.
T Consensus 210 vatv~s~PlDv~KTr~mN~~~~~y~g~~d~~~k~~k~eG~~~~~kGf~P~~~Rl~PhTvl~fv~lEQl~~~~~ 282 (286)
T KOG0759|consen 210 VATVISQPLDVLKTRIMNMKPGEYKGLLDVLVKTVKKEGPLGFFKGFVPALMRLGPHTVLTFVFLEQLRKAYG 282 (286)
T ss_pred HHHHhcChHHHHHHHHhhcCccccccHHHHHHHHHHHcCcchhhccchHHHHHhcchhhhHHHHHHHHHHHhc
Confidence 5778999999999999998666799999999999999999999999999999999999999999999998764
No 12
>KOG0758|consensus
Probab=99.78 E-value=3.8e-19 Score=105.59 Aligned_cols=73 Identities=29% Similarity=0.448 Sum_probs=65.8
Q ss_pred chhhccccHHHHHHHHHhcCCCCCCCH-HHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 2 AATVFVQPLDLIKNRMQLDKAKEYRSS-IQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~~~~~~~~-~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
..+++.+|+|++|+++|++++.+|.+. .++.+++++++|++++|||++|.++|..|.++..|..||...+++.
T Consensus 222 a~W~~v~P~DvvKS~iQt~~~~~~~~~~~~~~k~i~~~~G~k~~yrG~gp~~~RafPaNAA~F~~~E~~~~~~~ 295 (297)
T KOG0758|consen 222 AFWLAVFPFDVVKSRLQTDPKPTYKNSIRSVAKKIYRKEGLKGFYRGFGPTLLRAFPANAATFLGFELTMSLLG 295 (297)
T ss_pred hhHhhhccHHHHHHHHhcCCCCCccccHHHHHHHHHHhhchhhhhccccHHHhhhcccchhhhhHHHHHHHHhc
Confidence 457889999999999999966677754 5599999999999999999999999999999999999999988764
No 13
>KOG0751|consensus
Probab=99.78 E-value=1.9e-19 Score=113.07 Aligned_cols=74 Identities=32% Similarity=0.561 Sum_probs=68.6
Q ss_pred CchhhccccHHHHHHHHHhc-------CCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHH
Q psy13024 1 MAATVFVQPLDLIKNRMQLD-------KAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKF 73 (75)
Q Consensus 1 ~~~~~~~~P~d~~k~~~q~~-------~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 73 (75)
+++.+++||+|.+|||||+| ++-.|+|.+||++++++.||+.|||||+.|.+++..|.-++.+++.|..++.+
T Consensus 358 avGATaVYPIDlvKTRMQnQRs~gs~vge~~YkNS~DCfkKv~r~EG~~GLYrGLlPQliGVAPEKAIKLTvNDfvRdk~ 437 (694)
T KOG0751|consen 358 AVGATAVYPIDLVKTRMQNQRSSGSFVGELMYKNSFDCFKKVLRYEGFFGLYRGLLPQLIGVAPEKAIKLTVNDFVRDKF 437 (694)
T ss_pred cccceeEeeHHHHHHHHHhhccccceeehhhhcchHHHHHHHHhhhhHHHHHhhhhhhhhccCcHhhhhhhHHHHHHhhh
Confidence 46788999999999999998 34679999999999999999999999999999999999999999999999876
Q ss_pred h
Q psy13024 74 K 74 (75)
Q Consensus 74 ~ 74 (75)
.
T Consensus 438 t 438 (694)
T KOG0751|consen 438 T 438 (694)
T ss_pred c
Confidence 4
No 14
>KOG0758|consensus
Probab=99.78 E-value=5.4e-20 Score=109.15 Aligned_cols=73 Identities=23% Similarity=0.446 Sum_probs=68.5
Q ss_pred chhhccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 2 AATVFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
+..++.||+|+||+|+|+++.+.|++.+||+++++++||++|||||..+.++...+..++.|+.|+..|++++
T Consensus 26 ~~vlVGhPfDTvKVRlQt~~~~~y~~~~~c~~~t~~~Eg~~GfYkGm~~Pligv~~~~sv~F~~y~~~kr~~~ 98 (297)
T KOG0758|consen 26 AQVLVGHPFDTVKVRLQTQNTPVYKGTLDCVKKTLKNEGVKGFYKGMTAPLIGVGPINSVLFGVYGQGKRFLQ 98 (297)
T ss_pred hhhhccCCccceEEeeeccCCCCcccHHHHHHHHHHhcchhhhhcccccchhhhhhhheehhhhHHHHHHHHh
Confidence 4567889999999999999777799999999999999999999999999999999999999999999998875
No 15
>KOG0759|consensus
Probab=99.77 E-value=1.5e-18 Score=102.32 Aligned_cols=72 Identities=54% Similarity=0.863 Sum_probs=64.9
Q ss_pred chhhccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 2 AATVFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
.++++++|+|.+|+|||.++... +....++.+++++||+.++|.|+++.++|+..++...|++||.+++.+.
T Consensus 16 ~A~~~thPlDLvKvrmQ~~~~~~-k~si~~~~~i~k~eG~la~Y~GlSA~lLRQ~tYTt~R~g~Y~~l~~~~~ 87 (286)
T KOG0759|consen 16 GATCVTHPLDLVKVRMQLQGEHG-KLSIAQLTKILKNEGILAFYNGLSAALLRQATYTTTRFGLYEMLKDRYT 87 (286)
T ss_pred HHHHHcCcHHHHHHHHHHccccc-cchHHHHHHHHHhcChHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 57889999999999999996433 6777788889999999999999999999999999999999999988764
No 16
>PTZ00168 mitochondrial carrier protein; Provisional
Probab=99.76 E-value=1.6e-18 Score=102.60 Aligned_cols=64 Identities=23% Similarity=0.301 Sum_probs=58.5
Q ss_pred chhhccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHH
Q psy13024 2 AATVFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLL 70 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~ 70 (75)
+++++++|+|++|+|+|.++ .+..++++++ ++||++|||||+.+++++.+|..+++|.+||.+.
T Consensus 192 ~a~~~t~P~DvvKtr~q~~~----~~~~~~~~~i-~~eG~~glyrG~~~r~~r~~~~~~i~~~~~~~~~ 255 (259)
T PTZ00168 192 IAGFLTTPVDVIKSRQIIYG----KSYIETVTEI-AEEGYLTFYKGCCFRSSYLFFGGLIFFGSLRFFS 255 (259)
T ss_pred HHHHhCChHHHHHHHHHhcc----ccHHHHHHHH-HHhCHHHHHccchHHHHHHHhchHHHhhHhhhhh
Confidence 57789999999999999873 5678999998 9999999999999999999999999999999764
No 17
>KOG0768|consensus
Probab=99.76 E-value=1.2e-18 Score=104.51 Aligned_cols=70 Identities=24% Similarity=0.467 Sum_probs=65.1
Q ss_pred chhhccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 2 AATVFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
+++++..|.|++|.|+|+. ..++..++++.++++||++|||||+..+++|++|.++++|++||.+|..+.
T Consensus 149 ~a~~irvP~EvvKQR~Q~~---~~~~~~~~~~~i~~~~G~~GlYrG~gstl~ReiPf~~iqf~lyE~lK~~~~ 218 (323)
T KOG0768|consen 149 VACLIRVPTEVVKQRAQAG---QFERLCQILRSIISKEGFRGLYRGYGSTLLREIPFSAIQFPLYEQLKKTVL 218 (323)
T ss_pred HHHhhhchHHHHHHHHHhh---ccchHHHHHHHHHHhhccchhhhhhhHHHhhcCCHHHHHhHHHHHHHHHHH
Confidence 5788999999999999997 456699999999999999999999999999999999999999999998764
No 18
>KOG0757|consensus
Probab=99.76 E-value=3.9e-19 Score=104.89 Aligned_cols=73 Identities=25% Similarity=0.406 Sum_probs=65.7
Q ss_pred chhhccccHHHHHHHHHhcCC---CCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHhC
Q psy13024 2 AATVFVQPLDLIKNRMQLDKA---KEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFKA 75 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~~---~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 75 (75)
++.+.++|+=++|||+|.+.. ..|.|.++|+++++++||++|||||+.+++++ +..+.++|.+||.+|+.+.+
T Consensus 140 ~tstatNPIWlVKTRlQLd~~~~g~~~~~~~qc~~~Vy~~EG~rGfYkGltASyaG-vsEt~iqf~iYE~~K~~l~e 215 (319)
T KOG0757|consen 140 ATSTATNPIWLVKTRLQLDQKSRGSQYMNVWQCIRRVYHTEGFRGFYKGLTASYAG-VSETIIQFVIYEKIKQYLLE 215 (319)
T ss_pred HHhhccCceEEEeehhhhhcccCCcccccHHHHHHHHHHhhhhhHHhhcccHHhcc-chHhhHHHHHHHHHHHHHHh
Confidence 456789999999999999832 46999999999999999999999999999998 57889999999999998864
No 19
>KOG0757|consensus
Probab=99.75 E-value=8.8e-19 Score=103.40 Aligned_cols=72 Identities=25% Similarity=0.560 Sum_probs=67.5
Q ss_pred chhhccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 2 AATVFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
+++++.||-||+|||++-++. +|++++++++.++++||..|||||+.+.++|.+|.+++.|+.||..-.++.
T Consensus 246 ~As~iaYPHEVvRTRLReeg~-KY~gfvqt~~~v~keEG~~~lYrGL~~~L~R~iPNtaI~~~TYE~vvyll~ 317 (319)
T KOG0757|consen 246 IASIIAYPHEVVRTRLREEGT-KYTGFVQTLKLVFKEEGYPGLYRGLTTQLLRTVPNTAIMFGTYELVVYLLE 317 (319)
T ss_pred HHHHhcCcHHHHHHHHHHhcc-chhhHHHHHHHHHHhcChHHHHhHHHHHHHHhCCCceeeeehHHHHHHHhh
Confidence 678999999999999998864 999999999999999999999999999999999999999999999877664
No 20
>KOG0768|consensus
Probab=99.74 E-value=4.3e-18 Score=102.09 Aligned_cols=73 Identities=23% Similarity=0.427 Sum_probs=64.8
Q ss_pred chhhccccHHHHHHHHHhcCC-CCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 2 AATVFVQPLDLIKNRMQLDKA-KEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~~-~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
++..+++|+|++||||+.+.. ..+.++.++++.++++||+.|+|+|+.|+++...+..+++|+.||..++.+.
T Consensus 240 itA~lTTPlDViKTRiM~~~~~~~~~~~~~~i~~I~~eeG~~gl~kG~vPRv~w~s~gGaif~g~YE~~~~~l~ 313 (323)
T KOG0768|consen 240 ITAALTTPLDVIKTRIMLAKHGRSCSTLLRVIKSIYREEGFAGLFKGLVPRVFWISLGGAIFLGAYETAKSLLS 313 (323)
T ss_pred HHhhcCChHHHHHHHHhhcccccchhHHHHHHHHHHHhcchHHHhhcchhHHHHHccchHHHHhHHHHHHHHhh
Confidence 466899999999999999842 2333488999999999999999999999999999999999999999998875
No 21
>KOG0761|consensus
Probab=99.74 E-value=8.1e-19 Score=105.35 Aligned_cols=74 Identities=28% Similarity=0.552 Sum_probs=66.5
Q ss_pred chhhccccHHHHHHHHHhcC-----------------------------------------CCCCCCHHHHHHHHHHhhc
Q psy13024 2 AATVFVQPLDLIKNRMQLDK-----------------------------------------AKEYRSSIQAFTTILRKEG 40 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~-----------------------------------------~~~~~~~~~~~~~~~~~~G 40 (75)
+++++.+|+||+|+|+|.|. ...+++.+|++.+|.++||
T Consensus 33 iTs~~vtPLDVVKtRLQaQ~~~~~~~~~~~~~~kcf~~~N~l~~~L~~s~~~g~~~~~~~~~~qf~GT~Daf~KI~RhEG 112 (361)
T KOG0761|consen 33 ITSLIVTPLDVVKTRLQAQAAPMSYSHSNSPGGKCFFYSNGLMQHLRSSGIEGKESICPKDPGQFKGTLDAFTKIARHEG 112 (361)
T ss_pred eeeeecchHHHHHHHHHhccCCCCcccccCcCcceeeecCccchhhhcccccCccccCCCCccccCChHHHHHHHHHhhh
Confidence 46678999999999999981 0247789999999999999
Q ss_pred HhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHhC
Q psy13024 41 VFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFKA 75 (75)
Q Consensus 41 ~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 75 (75)
++.+|+|+.++++..+|.+++||..||.++.++++
T Consensus 113 irsLWsGL~ptlvmalPat~iYf~~Yd~lr~~l~~ 147 (361)
T KOG0761|consen 113 IRSLWSGLSPTLVMALPATGIYFTGYDQLRARLEE 147 (361)
T ss_pred hhhhhccCCchheeeccccEEEEehHHHHHHHHHH
Confidence 99999999999999999999999999999998763
No 22
>KOG0760|consensus
Probab=99.73 E-value=1.4e-18 Score=102.20 Aligned_cols=72 Identities=25% Similarity=0.455 Sum_probs=66.6
Q ss_pred chhhccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 2 AATVFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
++..+.+|+|+||.|+|+.. .+|.+.++|.+.++|+||+.+||+++.-.++.++|+.++.|.+||..++.+.
T Consensus 124 ~sDAvm~P~dvVKQR~Qm~~-~~y~sv~~ci~~v~r~EGl~AFYrsY~T~l~MniPftaihf~tYE~~~k~ln 195 (302)
T KOG0760|consen 124 ISDAVMNPFDVVKQRMQMYN-SPYKSVWDCIRTVYRNEGLGAFYRSYPTQLAMNIPFTAIHFMTYEFSQKFLN 195 (302)
T ss_pred HHHHhcCHHHHHHHHHhccc-CCCccHHHHHHHHHHhcchhHhhhccceeeeecCccceeehhhHHHHHHhcC
Confidence 35678999999999999975 5899999999999999999999999999999999999999999999998763
No 23
>KOG0762|consensus
Probab=99.73 E-value=2.5e-18 Score=100.19 Aligned_cols=69 Identities=35% Similarity=0.586 Sum_probs=63.7
Q ss_pred hhhccccHHHHHHHHHhc---CCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHH
Q psy13024 3 ATVFVQPLDLIKNRMQLD---KAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLN 71 (75)
Q Consensus 3 ~~~~~~P~d~~k~~~q~~---~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~ 71 (75)
-+.++.|+|.+|+|+|.| ...++++..||+++|+++||++|+|||+.++++|+.|..++||..||.+.+
T Consensus 118 Q~vi~aPmEl~K~rLQlqd~~~~~t~~Gpi~~~kqilr~eGlrgl~rGltaTvlRdaPafgvYF~tye~l~r 189 (311)
T KOG0762|consen 118 QSVICAPMELIKTRLQLQDQDSGITFSGPIDCLKQILRTEGLRGLYRGLTATVLRDAPAFGVYFWTYEYLRR 189 (311)
T ss_pred hhhhcchHHHHHHHHhhhcccCCccccCcHHHHHHHHhhhhhhHHhhhHHHHHHhcCCcceeeeeeHHHHHh
Confidence 357889999999999998 235788999999999999999999999999999999999999999999886
No 24
>KOG0751|consensus
Probab=99.72 E-value=3.2e-18 Score=107.61 Aligned_cols=72 Identities=35% Similarity=0.559 Sum_probs=67.4
Q ss_pred hhhccccHHHHHHHHHhc---CCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 3 ATVFVQPLDLIKNRMQLD---KAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 3 ~~~~~~P~d~~k~~~q~~---~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
+..++.|.||||||+|.. ++..|.+.+||+++++++||++.+|+|-.+++.|..|..++.+..||.+++++.
T Consensus 552 AA~LvTPaDVIKTRLQvaaRaGqTtYnGv~d~~rkilkEEgp~afwKGtaARV~RSSPQFgvTL~tYEllqR~fy 626 (694)
T KOG0751|consen 552 AASLVTPADVIKTRLQVAARAGQTTYNGVIDCFRKILKEEGPRAFWKGTAARVFRSSPQFGVTLATYELLQRWFY 626 (694)
T ss_pred hhhcCCHHHHHHHHheeccccCCceechHHHHHHHHHHhhChHhhhcccceeeeccCCcchhhHHHHHHHHHHhh
Confidence 456889999999999987 668899999999999999999999999999999999999999999999998764
No 25
>KOG0753|consensus
Probab=99.72 E-value=2.2e-18 Score=102.34 Aligned_cols=72 Identities=38% Similarity=0.679 Sum_probs=66.4
Q ss_pred chhhccccHHHHHHHHHhcCC---------CCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHH
Q psy13024 2 AATVFVQPLDLIKNRMQLDKA---------KEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNK 72 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~~---------~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~ 72 (75)
++.++++|+|+.|||||.|++ .+|.++.+++..|.|+||+++||+|++|.+.|+..++++.+++||.+|+.
T Consensus 32 vAE~~TfPlD~tKtRLQiQGe~~~~~~~~~~~YrG~~~t~~~i~ReEG~~~Ly~G~~pal~Rq~~y~~iRig~Yd~~k~~ 111 (317)
T KOG0753|consen 32 VAELVTFPLDTTKTRLQIQGESAAAVFKKGAKYRGMLGTILTIVREEGLLSLYSGLSPALQRQASYGGIRIGLYDSLKEL 111 (317)
T ss_pred HHHHhccccchhhhhhhccccccccccccccccccHHHHHHHHHHHhhhhhhhccCCHHHHHhheecceEEEehHHHHHH
Confidence 567899999999999999832 35889999999999999999999999999999999999999999999986
Q ss_pred H
Q psy13024 73 F 73 (75)
Q Consensus 73 ~ 73 (75)
+
T Consensus 112 ~ 112 (317)
T KOG0753|consen 112 Y 112 (317)
T ss_pred h
Confidence 5
No 26
>KOG0769|consensus
Probab=99.72 E-value=2e-17 Score=97.53 Aligned_cols=73 Identities=26% Similarity=0.435 Sum_probs=68.2
Q ss_pred chhhccccHHHHHHHHHhc----CCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 2 AATVFVQPLDLIKNRMQLD----KAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~----~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
++.+++||+|++|+|+|++ +..+|++..|++.+++++||+.++|+|+.|.....+..+.+||..|..+|....
T Consensus 16 iA~t~~YPLDT~ksr~Q~e~~~~~~~k~r~t~dvm~eiik~eg~lsLYqGl~p~~~~t~iSnFVYFY~y~~~k~~~~ 92 (308)
T KOG0769|consen 16 IAMTIFYPLDTVKSRLQAEVRVRGQRKYRYTSDVMWEIIKEEGVLSLYQGLGPVLVSTFISNFVYFYTYSYFKAVAS 92 (308)
T ss_pred HHHHhhcchHHHHHHHHHHHHhhhccchhHHHHHHHHHHhccchHHHhccccHHHHHHHHhhhHhhhhHHHHHHHHh
Confidence 5778999999999999998 478899999999999999999999999999999999999999999999998653
No 27
>KOG0762|consensus
Probab=99.69 E-value=1.3e-17 Score=97.29 Aligned_cols=73 Identities=27% Similarity=0.470 Sum_probs=67.0
Q ss_pred CchhhccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 1 MAATVFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 1 ~~~~~~~~P~d~~k~~~q~~~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
+++++.+||+|++|+|+|.+. ..|+++.||+++.+++||.+.+|||+...++|..|.++..|..+|..-+.+.
T Consensus 213 m~SWla~Yp~DVVKtrlQad~-~~Y~g~~dC~~ks~r~eG~r~f~rGL~saliRAFpvNaA~F~tve~vl~~~~ 285 (311)
T KOG0762|consen 213 MASWLACYPLDVVKTRLQADH-LAYEGIADCFRKSYRQEGYRVFFRGLNSALIRAFPVNAATFATVEVVLRILF 285 (311)
T ss_pred HHHHHHhccHHHHHHHHhccc-cchhhHHHHHHHHHHhcCceeehhhhhHHHHHhccccceeeeehHHHHHHHh
Confidence 467899999999999999985 3799999999999999999999999999999999999999999998776654
No 28
>KOG0756|consensus
Probab=99.68 E-value=9.8e-18 Score=99.72 Aligned_cols=72 Identities=28% Similarity=0.399 Sum_probs=64.1
Q ss_pred hhhccccHHHHHHHHHhcCCCCCC-CHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 3 ATVFVQPLDLIKNRMQLDKAKEYR-SSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 3 ~~~~~~P~d~~k~~~q~~~~~~~~-~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
+...+.|+|++|+|||......+. +..+|...|+++||+++||||..|++.|.++..++.|.+||...+++.
T Consensus 223 sv~~~~PiDvvktRMqsl~s~~~~~~t~~~~~~I~k~eGlkafykG~~PRlgrv~~~~~i~f~vyd~v~~ll~ 295 (299)
T KOG0756|consen 223 SVFGTQPIDVVKTRMQSLKSDKEYKQTIDCAYQILKSEGLKAFYKGLVPRLGRVCLSVGITFTVYDQVIELLA 295 (299)
T ss_pred ccccCCCcHHHHHHhhhhhccccccchHHHhHHHHHhhhHHHHhccccccccccccCceEEEEEhHHHHHHHH
Confidence 345568999999999998555544 599999999999999999999999999999999999999999988874
No 29
>KOG0761|consensus
Probab=99.68 E-value=3.7e-17 Score=98.32 Aligned_cols=72 Identities=22% Similarity=0.402 Sum_probs=62.7
Q ss_pred chhhccccHHHHHHHHHhcCCCCCC---------CHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHH
Q psy13024 2 AATVFVQPLDLIKNRMQLDKAKEYR---------SSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNK 72 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~~~~~~---------~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~ 72 (75)
++.++++|+|.+|||||+.. ..|. .+.+..+....+.|+++||+|+.++++|++|+++++|..||.+|+.
T Consensus 169 ~A~TvvsPiEL~RTkmQa~~-~ty~~~k~~~~~~ev~~~vr~~~a~~g~r~Lw~Gl~~tl~RDVPFSAiyW~~yE~~K~~ 247 (361)
T KOG0761|consen 169 LAVTVVSPIELARTKMQAFK-GTYAGVKPPVFKTEVGVFVRVKVANNGYRSLWRGLGPTLLRDVPFSAIYWSSYELIKKR 247 (361)
T ss_pred eeeEEechHHHHHHHHHhhc-cccCCcCcchHHHHHhhHHHHHHhcccHHHHHhccchhhhhcCCcceehhhhHHHHHHH
Confidence 46788999999999999984 2344 4566778888899999999999999999999999999999999998
Q ss_pred Hh
Q psy13024 73 FK 74 (75)
Q Consensus 73 ~~ 74 (75)
+.
T Consensus 248 L~ 249 (361)
T KOG0761|consen 248 LL 249 (361)
T ss_pred Hh
Confidence 74
No 30
>KOG0760|consensus
Probab=99.67 E-value=1.2e-16 Score=94.10 Aligned_cols=71 Identities=25% Similarity=0.436 Sum_probs=65.1
Q ss_pred hhccccHHHHHHHHHhcC--CCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 4 TVFVQPLDLIKNRMQLDK--AKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 4 ~~~~~P~d~~k~~~q~~~--~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
-.+.+|+|.+|||+|+-+ +....++...+++|.+.||+..+|||++...++..|..++||.+||..|+.+.
T Consensus 31 H~vMfPvDtvKTrmQsl~~~~~~~~~i~~~~~~i~~~EG~~a~~RGv~avilGagPAHalYFs~YE~~K~~l~ 103 (302)
T KOG0760|consen 31 HSVMFPVDTVKTRMQSLGPPPAKSKNIVSALRKISTTEGLLALYRGVSAVILGAGPAHALYFSTYEFMKRRLN 103 (302)
T ss_pred HhhccchhHHHHHHHhcCCCccccccHHHHHHHHHhhcchHhhhcchhHHHhcCCchhhhhHHHHHHHHHhcC
Confidence 367899999999999873 45677999999999999999999999999999999999999999999998775
No 31
>KOG0770|consensus
Probab=99.64 E-value=3e-16 Score=92.74 Aligned_cols=72 Identities=24% Similarity=0.358 Sum_probs=63.3
Q ss_pred chhhccccHHHHHHHHHhcCC---------CCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHH
Q psy13024 2 AATVFVQPLDLIKNRMQLDKA---------KEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNK 72 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~~---------~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~ 72 (75)
+++.+-.|-||+|+|+|.|++ ..|.+....++.++++||++++|-|++++++|++|++++++.+||.++++
T Consensus 140 ~~SfvYVPsEVlKtRlQlQGR~nnP~fqsgynY~~~rga~k~i~KeeG~k~lf~GY~aTlaRDvPFsglq~~FYEklrql 219 (353)
T KOG0770|consen 140 LGSFVYVPSEVLKTRLQLQGRNNNPVFQSGYNYGYYRGAFKAIWKEEGPKGLFAGYWATLARDVPFSGLQVVFYEKLRQL 219 (353)
T ss_pred hcceEEeeHHHHHHHHhHhcccCCCcccCCCchHHHHHHHHHHHHHhCcchhhhHHHHHHHhcCCchhhHHHHHHHHHHH
Confidence 345666799999999999832 34667888999999999999999999999999999999999999999986
Q ss_pred H
Q psy13024 73 F 73 (75)
Q Consensus 73 ~ 73 (75)
-
T Consensus 220 a 220 (353)
T KOG0770|consen 220 A 220 (353)
T ss_pred H
Confidence 4
No 32
>KOG0765|consensus
Probab=99.63 E-value=1.7e-16 Score=94.26 Aligned_cols=72 Identities=28% Similarity=0.508 Sum_probs=63.8
Q ss_pred chhhccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 2 AATVFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
+++++++|+|++|+|+|..+... ..+..+++++++|||+.++|||++|+++...+++......||.+|++..
T Consensus 259 tsti~TnPlD~irtRLQV~~~~~-~~~~qt~r~L~~Eeg~~~f~kGL~pR~is~s~~s~~mI~gYE~lKRL~a 330 (333)
T KOG0765|consen 259 TSTILTNPLDTIRTRLQVHRGES-MPIIQTVRTLLREEGWAGFYKGLGPRIISMSMSSTSMIVGYEFLKRLCA 330 (333)
T ss_pred hHHHhcCcHHHHHHHHhhccccc-chHHHHHHHHHHhcCceeeecCcchhHhhccccceeEeehHHHHHHHhc
Confidence 57789999999999999984322 2367999999999999999999999999999999999999999998764
No 33
>KOG0767|consensus
Probab=99.61 E-value=3.9e-16 Score=92.35 Aligned_cols=71 Identities=23% Similarity=0.384 Sum_probs=64.0
Q ss_pred chhhccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHH
Q psy13024 2 AATVFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKF 73 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 73 (75)
++.....|+|-+|+|+|+++ ..-+++.|++.+++++||+.|+|+|+.|-+.|++|++.+.|..||..-+.+
T Consensus 148 ~ADiaLcP~EA~KVRvQT~P-~fa~~l~~~~pki~k~EG~~~fykGl~PLW~RQIPYtmmKFa~FEr~vE~l 218 (333)
T KOG0767|consen 148 FADIALCPMEAVKVRVQTQP-GFANTLRDGFPKIYKEEGLGGFYKGLVPLWMRQIPYTMMKFACFERTVELL 218 (333)
T ss_pred HHHHHhCchhhheEEEeccC-cccchhHHHHHHHHHHhhhhhHhcCCchHHHhcccHHHHHHHHHHHHHHHH
Confidence 45677899999999999974 456789999999999999999999999999999999999999999877654
No 34
>KOG0766|consensus
Probab=99.61 E-value=3.3e-16 Score=90.64 Aligned_cols=69 Identities=30% Similarity=0.476 Sum_probs=64.0
Q ss_pred chhhccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHH
Q psy13024 2 AATVFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLN 71 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~ 71 (75)
.++++++|+|++|||||..+ ..++|+.+++.-++++||++|++.|..++++|....+++.|+.||.+-.
T Consensus 226 lAt~vT~Pfd~iKTrmQLeP-~kf~n~~~~~tli~kneg~rgff~G~~~R~lRkt~sa~iaW~vYEe~~~ 294 (297)
T KOG0766|consen 226 LATLVTQPFDVIKTRMQLEP-LKFQNIGQAVTLIFKNEGLRGFFQGGIPRALRKTLSAAIAWTVYEEMMA 294 (297)
T ss_pred HHHHhcCchhhhhhhhccch-HHhhhhhhheeeeeccccHHHHhhcccHHHHHHHHHHhhHHHHHHHHHH
Confidence 46789999999999999985 5799999999999999999999999999999999999999999998643
No 35
>KOG0754|consensus
Probab=99.60 E-value=1.8e-16 Score=92.62 Aligned_cols=71 Identities=27% Similarity=0.576 Sum_probs=65.7
Q ss_pred hhhccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHhh--cHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHH
Q psy13024 3 ATVFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKE--GVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKF 73 (75)
Q Consensus 3 ~~~~~~P~d~~k~~~q~~~~~~~~~~~~~~~~~~~~~--G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 73 (75)
.+.+.+|+|++|.|+|......+.+..+++++++++| |+.|||+|+.+++.|....++.+|++|..+|+.+
T Consensus 120 Ea~vV~PFEvvKirlQa~rn~~~~~t~~~~k~iik~eg~Gi~gLykGi~Atm~Rh~vwn~gYFG~y~~vrn~v 192 (294)
T KOG0754|consen 120 EAFVVNPFEVVKIRLQAVRNKEYLSTVSVAKKIIKNEGYGILGLYKGITATMWRHGVWNMGYFGFYYQVRNSV 192 (294)
T ss_pred heeEecceeeEEeehhhhhccccccHHHHHHHHHHccCcchhhHhhhhHHHHHhhheeecchhhhHHHHHhhC
Confidence 4578899999999999986567999999999999999 7899999999999999999999999999998865
No 36
>KOG0770|consensus
Probab=99.58 E-value=3.1e-16 Score=92.68 Aligned_cols=73 Identities=26% Similarity=0.410 Sum_probs=66.0
Q ss_pred hhhccccHHHHHHHHHhc-CCCCCCCHHHHHHHHHHhhcHh-HhhccchHhHHHHHHHhhhHHhHHHHHHHHHhC
Q psy13024 3 ATVFVQPLDLIKNRMQLD-KAKEYRSSIQAFTTILRKEGVF-AMYNGLSAGLLRQATYTTTRLGTYNLLLNKFKA 75 (75)
Q Consensus 3 ~~~~~~P~d~~k~~~q~~-~~~~~~~~~~~~~~~~~~~G~~-gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 75 (75)
+....+|+|++|||+|.+ ...+|.++.++.+.++-+||++ |+|+|+.|.+++..|..+++|++||.-|+++.|
T Consensus 46 gd~~MHslDTvKTRqQ~a~~~nky~~m~~~yrTiw~eeGv~~GlY~Gi~p~~~GSlpt~A~fFg~yEyTKr~i~e 120 (353)
T KOG0770|consen 46 GDGMMHSLDTVKTRQQSAIIMNKYQSMLQMYRTIWVEEGVKRGLYRGIAPGVTGSLPTGATFFGFYEYTKRWIEE 120 (353)
T ss_pred ccccccchhHHHHHHhhhhHHHHHHHHHHHHHHHhhhhchhhhhhcccchHhhCCCcccceeeehhHHhHHHHHh
Confidence 446789999999999998 3357889999999999999997 999999999999999999999999999998764
No 37
>KOG0036|consensus
Probab=99.56 E-value=2.5e-15 Score=92.81 Aligned_cols=70 Identities=24% Similarity=0.372 Sum_probs=64.9
Q ss_pred chhhccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHH
Q psy13024 2 AATVFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKF 73 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 73 (75)
+++++++|+-++|||||+++ .+.++.++++++.++||+.|+|||+.|+++..+|..++....||..|+.+
T Consensus 391 cGq~~syPL~lVRTRmQaq~--~~~tm~g~f~~~l~~eG~~glyrgl~PN~lKv~pa~siSy~VYEamkk~l 460 (463)
T KOG0036|consen 391 CGQTASYPLALVRTRMQAQG--GKDTMSGCFQWTLRNEGFRGLYRGLFPNLLKVPPAVSISYVVYEAMKKTL 460 (463)
T ss_pred hcccccCcHHHHHHHHhccC--CCCcHHHHHHHHHHhhhHHHHHhhcCCccccccccceeehhhHHHHHHhc
Confidence 35688999999999999995 37899999999999999999999999999999999999999999998765
No 38
>KOG0767|consensus
Probab=99.56 E-value=3.9e-16 Score=92.34 Aligned_cols=69 Identities=30% Similarity=0.562 Sum_probs=63.8
Q ss_pred hccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 5 VFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 5 ~~~~P~d~~k~~~q~~~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
+...|+|++|.|+|.++ ..|++....++.++++||++|+++|+.|++++...+.+..|+.||.+|..+.
T Consensus 54 ~aitPLDlvKcrmQv~P-~kY~~~~~GFk~~iaeeG~rgl~~Gw~pTllGYS~QG~~KfG~YE~FK~~Ys 122 (333)
T KOG0767|consen 54 TAITPLDLVKCRMQVDP-AKYKSIVQGFKVTIAEEGVRGLARGWAPTLLGYSAQGAGKFGFYEVFKKLYS 122 (333)
T ss_pred ccccchhheeeeeeeCh-hhhccchhHHHHHHHhhhhHHHHhccccceeceecccccccchHHHHHHHHH
Confidence 34579999999999985 5899999999999999999999999999999999999999999999998764
No 39
>KOG0765|consensus
Probab=99.56 E-value=3.4e-15 Score=88.83 Aligned_cols=68 Identities=28% Similarity=0.465 Sum_probs=60.9
Q ss_pred hccccHHHHHHHHHhc-CCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHH-HHHHH
Q psy13024 5 VFVQPLDLIKNRMQLD-KAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNL-LLNKF 73 (75)
Q Consensus 5 ~~~~P~d~~k~~~q~~-~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~-~~~~~ 73 (75)
+..+|+-++|+|+|.+ .+..|++.+++..+|+|.||++|||||++.++...+|. .++...||. .++.+
T Consensus 49 ~aLYP~~vlkTrlQVq~~~~vyrs~f~~~~~I~r~eG~~GLYRGF~~s~~~~i~a-~~Y~Ta~E~tvr~~~ 118 (333)
T KOG0765|consen 49 TALYPLTVLKTRLQVQKKNTVYRSTFDAASKILRREGVRGLYRGFGTSLPGIIPA-AIYMTALEKTVRKVL 118 (333)
T ss_pred eeeeehhhhhhHHhhccccchhHHHHHHHHHHHHhcCCchhhhhhccccccchhh-hhhHHHHHHHHHHHh
Confidence 5679999999999999 44568899999999999999999999999999998888 999999998 45544
No 40
>KOG0749|consensus
Probab=99.54 E-value=1.8e-14 Score=85.01 Aligned_cols=71 Identities=24% Similarity=0.423 Sum_probs=60.9
Q ss_pred chhhccccHHHHHHHHHhc--CCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHH
Q psy13024 2 AATVFVQPLDLIKNRMQLD--KAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKF 73 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~--~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 73 (75)
.+..++||+|++|.||... ....|++..||+++|+++||+.+||||.+++++|. ...+.-..+||.+++++
T Consensus 226 ~ag~~sYP~DTVRRRmm~~~~~~~~Y~~TldC~rkI~k~EG~~affkGa~sNilRg-~ggA~Vl~~Yde~~k~~ 298 (298)
T KOG0749|consen 226 GAGLLSYPLDTVRRRMMQSKGADLKYTGTLDCWRKIYKEEGGKAFFKGALSNILRG-TGGALVLALYDEIQKYM 298 (298)
T ss_pred hcccccccchHHHHHHhhccCcccccCcHHHHHHHHHHHhchHHHhhhHHHHHhhc-cchhhhhHHHHHHHhhC
Confidence 3567899999999995433 34679999999999999999999999999999996 66688899999998763
No 41
>KOG0036|consensus
Probab=99.53 E-value=4.5e-15 Score=91.73 Aligned_cols=72 Identities=26% Similarity=0.401 Sum_probs=67.0
Q ss_pred chhhccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHH
Q psy13024 2 AATVFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKF 73 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 73 (75)
++.+..||+|++|+|+|......+.+++++.++++.+||++++|+|+.|+++..+|+.++-++.||.+++..
T Consensus 295 vAQ~~IYPmd~lKtRlq~~~~~~~~~~l~~ak~il~~eg~r~FykG~~p~llGIiPyagidLa~yetLk~~~ 366 (463)
T KOG0036|consen 295 VAQTSIYPMDTLKTRLQCRPLGQGKGLLKLAKDILFQEGPRAFYKGYLPNLLGIIPYAGIDLAVYETLKDTW 366 (463)
T ss_pred HHHhhcChHHHHHHHhhcccccchhhhhhhhhhHHHhhhHHHHHhccccceeEecccccchHHHHHHHHHHH
Confidence 577889999999999999865566699999999999999999999999999999999999999999999876
No 42
>KOG0749|consensus
Probab=99.53 E-value=2.1e-16 Score=93.05 Aligned_cols=72 Identities=22% Similarity=0.515 Sum_probs=65.3
Q ss_pred hhhccccHHHHHHHHHhc-----CCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 3 ATVFVQPLDLIKNRMQLD-----KAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 3 ~~~~~~P~d~~k~~~q~~-----~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
+.+.+||+|.++||+-.+ .++.++++.||++++++.+|+.|+|||+.+++...+.+.+.+|++||++|..+.
T Consensus 129 sL~fVYpLDfarTRLaaD~gk~~~~R~f~Gl~Dc~~Ki~ksDGi~glYrGf~~SvqgiiiyR~~YFG~yDT~k~~~~ 205 (298)
T KOG0749|consen 129 SLCFVYPLDFARTRLAADVGKGGTEREFKGLIDCLKKIAKSDGIAGLYRGFPVSVQGIIIYRAAYFGLYDTAKPVLP 205 (298)
T ss_pred eEEEEeccchhhHHHHhhcCCCCCCCCcccHHHHHHHHHccccchhhhhcCCcceEEEEEecceeeeeecccccccC
Confidence 446789999999999987 256789999999999999999999999999999999999999999999987653
No 43
>KOG0750|consensus
Probab=99.53 E-value=8.7e-15 Score=86.10 Aligned_cols=60 Identities=28% Similarity=0.517 Sum_probs=52.1
Q ss_pred chhhccccHHHHHHHHH--hcCCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhh
Q psy13024 2 AATVFVQPLDLIKNRMQ--LDKAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTT 61 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q--~~~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~ 61 (75)
.+..++.|+||+|||+| ..+++.|++..||+++++++||+..+++|..++++-..|-.++
T Consensus 224 ~sa~~vtPlDVvKTRiQ~~~~ned~~~gi~d~~~~~lk~EGptAffKG~~cr~lv~aPlFgi 285 (304)
T KOG0750|consen 224 ASAIVVTPLDVVKTRIQTLGDNEDNYKGIFDCVKNTLKNEGPTAFFKGATCRMLVTAPLFGI 285 (304)
T ss_pred hhhhhcccHHHHHHHHhhcccCccccccHHHHHHHHHHhhChHHHhcccccceeeecchhhh
Confidence 46678899999999999 5577889999999999999999999999999988776664433
No 44
>KOG0763|consensus
Probab=99.50 E-value=1.4e-14 Score=83.88 Aligned_cols=69 Identities=25% Similarity=0.391 Sum_probs=61.2
Q ss_pred hhhccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 3 ATVFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 3 ~~~~~~P~d~~k~~~q~~~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
-++.++|.|+||.|+|.-+ -.++..++-.++|+||+.++|+|+.|+++|.+|.++.-|..||.-++.+-
T Consensus 230 LWtsv~PaDviKSRiQV~~---~~~fm~t~~avVr~eGi~aLY~GLlpt~lRt~pA~g~LFvaYEytrk~~~ 298 (301)
T KOG0763|consen 230 LWTSVFPADVIKSRIQVLS---MNGFMFTLGAVVRNEGILALYSGLLPTMLRTIPANGALFVAYEYTRKAMM 298 (301)
T ss_pred EEeeeccHHHHhhHheecc---cchHHHHHHHHHhhhhHHHHHhccchHHHhhccCcceEEEehHHHHHHHH
Confidence 4678899999999999873 23677788889999999999999999999999999999999999988763
No 45
>KOG0755|consensus
Probab=99.49 E-value=3.9e-15 Score=87.16 Aligned_cols=74 Identities=26% Similarity=0.425 Sum_probs=67.5
Q ss_pred CchhhccccHHHHHHHHHhcC-------CCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHH
Q psy13024 1 MAATVFVQPLDLIKNRMQLDK-------AKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKF 73 (75)
Q Consensus 1 ~~~~~~~~P~d~~k~~~q~~~-------~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 73 (75)
++++.+..|+=.+|||+|++. +..|.++++.++++++++|++|+|||..+.++|....++++..+|++.|+++
T Consensus 139 vvGa~~~SPfFLvKTrlQs~s~qi~vG~Q~~~t~m~nal~~I~k~nGVkGL~rGs~Aai~Rt~~gSsvQl~iy~~aK~ll 218 (320)
T KOG0755|consen 139 VVGAYFGSPFFLVKTRLQSYSKQIAVGYQHGYTSMFNALRRIYKENGVKGLFRGSDAAILRTVSGSSVQLPIYNWAKRLL 218 (320)
T ss_pred eeeeeecCceeeeeHhhHhhccccccchhhcccHHHHHHHHHHHhcCcceeeechHHhhhhhhcccceeeeechHHHHHH
Confidence 356778899999999999983 3568899999999999999999999999999999999999999999999987
Q ss_pred h
Q psy13024 74 K 74 (75)
Q Consensus 74 ~ 74 (75)
.
T Consensus 219 ~ 219 (320)
T KOG0755|consen 219 V 219 (320)
T ss_pred H
Confidence 5
No 46
>KOG0756|consensus
Probab=99.49 E-value=9.6e-15 Score=87.10 Aligned_cols=72 Identities=24% Similarity=0.427 Sum_probs=63.9
Q ss_pred hhccccHHHHHHHHHhc---C--CCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHhC
Q psy13024 4 TVFVQPLDLIKNRMQLD---K--AKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFKA 75 (75)
Q Consensus 4 ~~~~~P~d~~k~~~q~~---~--~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 75 (75)
.++..|+|.+|++.+.+ + ...+.++++++++|+++||++|+|+|..+..+|+.+.+++.|+.|+.++++++.
T Consensus 123 v~~v~P~e~vKta~i~~~~~~~~~~~~~g~~~~~~~IvkeeGi~gi~~Gv~at~~rQ~tNqa~rF~~~~~lk~~~~~ 199 (299)
T KOG0756|consen 123 VAVVTPMECVKTAFIQDKKSPSPKYKQKGFIHVVRHIVKEEGIRGIYRGVTATAARQGTNQAIRFTLYTPLKDLLRG 199 (299)
T ss_pred eEEeeceeeeeehhhhhccCCCcccccccHHHHHHHHHHhcCccccccCccHHHHHhcccccceehhhHHHHHHHhc
Confidence 46788999999998776 2 233459999999999999999999999999999999999999999999998863
No 47
>KOG0755|consensus
Probab=99.47 E-value=9.7e-14 Score=81.36 Aligned_cols=69 Identities=30% Similarity=0.472 Sum_probs=62.6
Q ss_pred hhccccHHHHHHHHHhcC-CCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHH
Q psy13024 4 TVFVQPLDLIKNRMQLDK-AKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNK 72 (75)
Q Consensus 4 ~~~~~P~d~~k~~~q~~~-~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~ 72 (75)
++..+|+|++.||+-+|+ +.-|++..||+.+++|.||+-++|+|+++.++|..|.+.+-+.++|....+
T Consensus 243 svam~p~Dvv~TRlYNQ~~d~lYkg~iDC~lk~lRsEGv~~lYKGF~a~~~RiAPht~l~L~F~eq~~kl 312 (320)
T KOG0755|consen 243 SVAMTPFDVVTTRLYNQKVDELYKGPIDCILKTLRSEGVYALYKGFWAHYLRIAPHTILCLTFFEQTNKL 312 (320)
T ss_pred EEEecchHHHHHHHHhcccchhhcCcHHHHHHHHHhhhHHHHHhhHHHHHhhcCcchhhHHHHHHHHHHH
Confidence 356789999999999994 367999999999999999999999999999999999999999999987654
No 48
>KOG0766|consensus
Probab=99.46 E-value=5.3e-14 Score=81.61 Aligned_cols=67 Identities=28% Similarity=0.473 Sum_probs=61.3
Q ss_pred chhhccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHH
Q psy13024 2 AATVFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLN 71 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~ 71 (75)
++++..+|+|.+|||+|.. ...+++..+++++++|++.++|||..|+.+|..|.++++|++-+.++.
T Consensus 27 ~St~~lQPLDLLKTR~Qq~---qr~~l~k~l~~iv~~~s~l~LWkGtlPSilR~~~Gs~~Yf~~Ln~lr~ 93 (297)
T KOG0766|consen 27 CSTLLLQPLDLLKTRLQQL---QRVGLLKVLLKIVRTESLLGLWKGTLPSILRCVPGSGIYFGTLNSLRH 93 (297)
T ss_pred hhhhhcCcHHHHHHHHHHH---HHhhHHHHHHHHHhccchHHhhcccchhhhhcccCceehhhhHHHHHh
Confidence 5678889999999999976 356899999999999999999999999999999999999999998873
No 49
>KOG0763|consensus
Probab=99.42 E-value=1.7e-13 Score=79.49 Aligned_cols=69 Identities=23% Similarity=0.341 Sum_probs=63.7
Q ss_pred hccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 5 VFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 5 ~~~~P~d~~k~~~q~~~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
...+|+|++|+++|.-+ ..|+++.||+.+.|+++|++|+|+|..|.+..++..+++-|..|...++.++
T Consensus 31 y~gQPlDTvKVK~QTFP-~lYrg~~dC~l~TY~~dGlRGlYaGt~PAl~AnvAENsVLF~aYG~CQk~va 99 (301)
T KOG0763|consen 31 YTGQPLDTVKVKMQTFP-DLYRGLTDCFLKTYRQDGLRGLYAGTVPALFANVAENSVLFMAYGFCQKFVA 99 (301)
T ss_pred eeCCCcceeeeehccCh-HHHhhHHHHHHHHHHHhhhhhhhcCccHHHHHHHHhhhHHHHHHhhHHHHHH
Confidence 35679999999999975 5799999999999999999999999999999999999999999999888764
No 50
>KOG0750|consensus
Probab=99.38 E-value=3.4e-13 Score=79.49 Aligned_cols=69 Identities=26% Similarity=0.402 Sum_probs=58.5
Q ss_pred hccccHHHHHHHHHhcCC---CCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHH
Q psy13024 5 VFVQPLDLIKNRMQLDKA---KEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKF 73 (75)
Q Consensus 5 ~~~~P~d~~k~~~q~~~~---~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 73 (75)
.++.|+|++|.++|.+++ ..-...-....+++++||+.|||||++++.+|++|.+.++|..+.+++++.
T Consensus 128 vvttPmelLKIqmQd~gr~a~~~~~~at~l~~~lLr~~Gif~LYkG~G~T~aRdvpfS~~yFplfA~l~~lg 199 (304)
T KOG0750|consen 128 VVTTPMELLKIQMQDAGRVAAATKVFATRLTWKLLRDEGIFGLYKGLGATLARDVPFSFAYFPLFAFLNELG 199 (304)
T ss_pred EEeccHHHHHhhhhcCcccccccccchhHHHHHHHHhhhHHHHHhccchhhhccCcccEEeechhHHHHhhc
Confidence 567999999999999852 112344566788999999999999999999999999999999999988764
No 51
>KOG0769|consensus
Probab=99.37 E-value=3.3e-12 Score=75.75 Aligned_cols=70 Identities=26% Similarity=0.361 Sum_probs=61.4
Q ss_pred chhhccccHHHHHHHHHhcC----------CCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHH
Q psy13024 2 AATVFVQPLDLIKNRMQLDK----------AKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLN 71 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~----------~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~ 71 (75)
++++++||+-++|+++|..+ ....+++.+.+..+++.||+.|+|+|+.+.++..+...++.|.++|.+-.
T Consensus 217 ~ATvvTYPli~vksmlqa~~~~~~n~~~~~~g~~r~il~ll~~~~r~eGi~Gl~KGl~akilqtVLtaALlfmikEklt~ 296 (308)
T KOG0769|consen 217 IATVVTYPLIVVKSMLQAADSSKENKQKKPRGSTRTILGLLYAIWRKEGILGLFKGLEAKILQTVLTAALLFMIKEKLTA 296 (308)
T ss_pred HHHHHhhhHHHHHHHHHhccccccChhhcccccccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999862 12233678999999999999999999999999999999999999998754
No 52
>KOG2745|consensus
Probab=99.08 E-value=1.5e-10 Score=68.94 Aligned_cols=57 Identities=25% Similarity=0.430 Sum_probs=51.9
Q ss_pred chhhccccHHHHHHHHHhc---CCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHH
Q psy13024 2 AATVFVQPLDLIKNRMQLD---KAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATY 58 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~---~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~ 58 (75)
++.++++|+.|+..|+.+| .+.+|.+..+.+..|+|+||+.|+|.|+.|.++++...
T Consensus 149 ~~v~~ahPFhVi~~R~maQfVGrEtkYtg~~~Sl~~I~kqEG~~GfFaGLvP~LLGdl~~ 208 (321)
T KOG2745|consen 149 VAVVAAHPFHVISLRQMAQFVGRETKYTGLVGSLATIGKQEGIAGFFAGLVPRLLGDLLV 208 (321)
T ss_pred HHHhhcCceeeeeHHHHHHHHcccchhhHHHHHHHHHHHhcchhhHHhhhhHHHHhhHHH
Confidence 5678899999999999888 67889999999999999999999999999999988653
No 53
>KOG1519|consensus
Probab=99.06 E-value=7.7e-10 Score=63.75 Aligned_cols=68 Identities=22% Similarity=0.353 Sum_probs=61.0
Q ss_pred hccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHh--hcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHH
Q psy13024 5 VFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRK--EGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNK 72 (75)
Q Consensus 5 ~~~~P~d~~k~~~q~~~~~~~~~~~~~~~~~~~~--~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~ 72 (75)
....|+.++|+|||++-...+.+.+.+++++|.+ ..+.++|+|...++-|....+++--.+||.+.+.
T Consensus 227 ~~FFPi~VvKt~MQsqiG~efqS~~KVFqkiW~~RdRkL~~Lf~GaHLNy~RSLisWGIINa~Y~~L~kA 296 (297)
T KOG1519|consen 227 FLFFPINVVKTRMQSQIGGEFQSFPKVFQKIWLERDRKLINLFRGAHLNYHRSLISWGIINATYEFLLKA 296 (297)
T ss_pred HhhccHHHHHHHHHHHhCccccchHHHHHHHHHHhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 4568999999999999778999999999999965 5789999999999999999999999999988753
No 54
>KOG2954|consensus
Probab=98.94 E-value=6.2e-09 Score=63.71 Aligned_cols=60 Identities=23% Similarity=0.495 Sum_probs=51.3
Q ss_pred hhhccccHHHHHHHHHhcCC-----------------CCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhH
Q psy13024 3 ATVFVQPLDLIKNRMQLDKA-----------------KEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTR 62 (75)
Q Consensus 3 ~~~~~~P~d~~k~~~q~~~~-----------------~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~ 62 (75)
..++.+|+|+|-.|++.|+. ..|.+.+||.+.++.+||+.|+|+|+++.++......++.
T Consensus 290 TdvilyPfETIlHRl~iQGTRTiIDNlDtGysvvpi~t~Y~G~fDC~rt~~~sEGv~glYkGfGAvilqy~lh~avi 366 (427)
T KOG2954|consen 290 TDVILYPFETILHRLYIQGTRTIIDNLDTGYSVVPILTKYSGYFDCYRTTLESEGVWGLYKGFGAVILQYSLHVAVI 366 (427)
T ss_pred hhhhhccHHHHHHHHhccceeeeeeccCCcceeeEeeeccchHHHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHH
Confidence 45788999999999999831 4789999999999999999999999999888776655543
No 55
>KOG2745|consensus
Probab=97.75 E-value=0.00014 Score=44.07 Aligned_cols=56 Identities=23% Similarity=0.330 Sum_probs=45.2
Q ss_pred hhccccHHHHHHHHHhcCC---------------CCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHh
Q psy13024 4 TVFVQPLDLIKNRMQLDKA---------------KEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYT 59 (75)
Q Consensus 4 ~~~~~P~d~~k~~~q~~~~---------------~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~ 59 (75)
+++++|++.+|+-+|...+ ..-.|++.-.++|-.-+|..|+|+|+.|++...+...
T Consensus 31 saLs~Pl~y~K~LIQlGhEPlpp~~g~~I~gR~v~~LP~~fsYakhI~~idG~~gl~rGLtprL~a~~v~~ 101 (321)
T KOG2745|consen 31 SALSHPLEYVKTLIQLGHEPLPPTKGRNILGRPVLFLPNFFSYAKHIGTIDGYIGLYRGLTPRLAASAVQT 101 (321)
T ss_pred HHhhchHHHHHHHHHhCCCCCCCCccceecCccceeCccHHHHHHHHhcccccchhhhcccHHHHHHHHHH
Confidence 4678999999999998721 1234788899999999999999999999887765443
No 56
>KOG1519|consensus
Probab=97.65 E-value=2.9e-05 Score=45.17 Aligned_cols=67 Identities=21% Similarity=0.360 Sum_probs=54.3
Q ss_pred hhhccccHHHHHHHHHhc-CCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHH
Q psy13024 3 ATVFVQPLDLIKNRMQLD-KAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLL 70 (75)
Q Consensus 3 ~~~~~~P~d~~k~~~q~~-~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~ 70 (75)
+..+..|+|.+.+-+|.. ..+++.|..++++.+ +-+|+.-.|||+.|.+.|....+..+|+.-...+
T Consensus 131 aeaiftplervqtllqnhkhhdkftntyqafkal-kchgigeyyrglvpilfrnglsnvlf~~l~~P~k 198 (297)
T KOG1519|consen 131 AEAIFTPLERVQTLLQNHKHHDKFTNTYQAFKAL-KCHGIGEYYRGLVPILFRNGLSNVLFFGLRGPIK 198 (297)
T ss_pred hhhhcChHHHHHHHHhhcccccchhhHHHHHHHh-hccccchhhcccchhhhhccchhhhhhhcccccc
Confidence 457889999999999998 346778888877654 7789999999999999999988888887644333
No 57
>KOG2954|consensus
Probab=86.06 E-value=0.53 Score=29.88 Aligned_cols=52 Identities=19% Similarity=0.489 Sum_probs=37.9
Q ss_pred hhccccHHHHHHHHHhcC-CCCCC----CHHHHHHHHHHhhcHhHhhccchHhHHHH
Q psy13024 4 TVFVQPLDLIKNRMQLDK-AKEYR----SSIQAFTTILRKEGVFAMYNGLSAGLLRQ 55 (75)
Q Consensus 4 ~~~~~P~d~~k~~~q~~~-~~~~~----~~~~~~~~~~~~~G~~gly~G~~~~~~~~ 55 (75)
.++++|.-|+|.+=|... ...|. .+..++....+..|+..+|+|....++-.
T Consensus 81 nllsHPc~VLRrQCQV~~~a~~yHLtPftlip~i~~~~rrQGl~tlWKGmgs~~lv~ 137 (427)
T KOG2954|consen 81 NLLSHPCGVLRRQCQVYNAAGSYHLTPFTLIPVIVHLHRRQGLTTLWKGMGSCLLVR 137 (427)
T ss_pred hhhcCchhhhhhHhhhhhhccceeccceeeeehhhhhhhhccHHHHHhhccceeeeh
Confidence 467899999988777652 11222 34567788889999999999998765543
No 58
>PRK02944 OxaA-like protein precursor; Validated
Probab=66.10 E-value=8.8 Score=23.32 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHH
Q psy13024 29 IQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLN 71 (75)
Q Consensus 29 ~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~ 71 (75)
-...+++++++|+.- ++|+.|.++. +| +.+++|..+++
T Consensus 114 ~~e~~~Lyk~~gvnP-~~g~lp~liQ-~P---ifi~lf~~i~~ 151 (255)
T PRK02944 114 QQEMMQLFQKNGVNP-LAGCLPIFIQ-MP---ILIAFYHAIMR 151 (255)
T ss_pred HHHHHHHHHHcCCCc-hHHHHHHHHH-HH---HHHHHHHHHHh
Confidence 345677899999764 4666665554 34 35555555443
No 59
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=63.73 E-value=19 Score=20.67 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHH
Q psy13024 28 SIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNK 72 (75)
Q Consensus 28 ~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~ 72 (75)
.....+++++++|+.-+ +|+.+.++.. -+.+++|+.+++.
T Consensus 53 ~~~~~~~l~k~~~~~p~-~~~~~~liq~----Pif~~~~~~lr~~ 92 (198)
T PF02096_consen 53 MQQEMQKLYKKHGVNPL-KGCLPPLIQI----PIFIGLFRALRRM 92 (198)
T ss_pred HHHHHHHHHHHcCCCcH-HHHHHHHHHH----HHHHHHHHHHHHH
Confidence 44567788899987554 6666555443 4566666666654
No 60
>PF00473 CRF: Corticotropin-releasing factor family; InterPro: IPR000187 Corticotropin-releasing factor (CRF), urotensin-I, urocortin and sauvagine form a family of related neuropeptides in vertebrates. The family can be grouped into 2 separate paralogous lineages, with urotensin-I, urocortin and sauvagine in one group and CRF forming the other group. Urocortin and sauvagine appear to represent orthologues of fish urotensin-I in mammals and amphibians, respectively. The peptides have a variety of physiological effects on stress and anxiety, vasoregulation, thermoregulation, growth and metabolism, metamorphosis and reproduction in various species, and are all released as preprohormones []. CRF [] is a hormone found mainly in the paraventricular nucleus of the mammalian hypothalamus that regulates the release of corticotropin (ACTH) from the pituitary gland. From here, CRF is transported to the anterior pituitary, stimulating adrenocorticotropic hormone (ACTH) release via CRF type 1 receptors, thereby activating the hypothalamo-pituitary-adrenocortical axis (HPA) and thus glucocorticoid release. CRF is evolutionary related to a number of other active peptides. Urocortin acts in vitro to stimulate the secretion of adrenocorticotropic hormone. Urotensin is found in the teleost caudal neurosecretory system and may play a role in osmoregulation and as a corticotropin-releasing factor. Urotensin-I is released from the urophysis of fish, and produces ACTH and subsequent cortisol release in vivo. The nonhormonal portion of the prohormone is thought to be the urotensin binding protein (urophysin). Sauvagine (P01144 from SWISSPROT), isolated from frog skin, has a potent hypotensive and diuretic effect.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 3EHU_C 3EHT_B 2RMF_A 3N96_G.
Probab=61.55 E-value=5.8 Score=17.18 Aligned_cols=16 Identities=13% Similarity=0.457 Sum_probs=12.8
Q ss_pred hccccHHHHHHHHHhc
Q psy13024 5 VFVQPLDLIKNRMQLD 20 (75)
Q Consensus 5 ~~~~P~d~~k~~~q~~ 20 (75)
.+..|+|+.+.++...
T Consensus 5 SIdl~~~vLR~~l~~~ 20 (39)
T PF00473_consen 5 SIDLTFHVLRQRLELE 20 (39)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHH
Confidence 4667999999988765
No 61
>PF12594 DUF3764: Protein of unknown function (DUF3764); InterPro: IPR022240 This family of proteins is found in bacteria. Proteins in this family are typically between 89 and 101 amino acids in length.
Probab=54.92 E-value=3.7 Score=20.93 Aligned_cols=18 Identities=22% Similarity=0.552 Sum_probs=14.5
Q ss_pred HHHHHhhcHhHhhccchH
Q psy13024 33 TTILRKEGVFAMYNGLSA 50 (75)
Q Consensus 33 ~~~~~~~G~~gly~G~~~ 50 (75)
..+.++.|++.||||...
T Consensus 27 ~~~~~e~gIk~lyrGvsk 44 (86)
T PF12594_consen 27 QAMHKEFGIKSLYRGVSK 44 (86)
T ss_pred HHHHHhcCCeEEEEeccc
Confidence 456677899999999874
No 62
>COG1993 PII-like signaling protein [Signal transduction mechanisms]
Probab=54.11 E-value=9 Score=20.41 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHhhcHhH--hhccch
Q psy13024 26 RSSIQAFTTILRKEGVFA--MYNGLS 49 (75)
Q Consensus 26 ~~~~~~~~~~~~~~G~~g--ly~G~~ 49 (75)
..+.+.+.+..+++|++| .|||+.
T Consensus 22 kp~~~~iverlre~Gi~GATVlRGI~ 47 (109)
T COG1993 22 KPLYEAIVERLREEGIRGATVLRGIA 47 (109)
T ss_pred eEHHHHHHHHHHHcCcCceeeeeeee
Confidence 357788899999999887 667654
No 63
>smart00039 CRF corticotropin-releasing factor.
Probab=53.92 E-value=13 Score=16.18 Aligned_cols=16 Identities=25% Similarity=0.592 Sum_probs=12.6
Q ss_pred hccccHHHHHHHHHhc
Q psy13024 5 VFVQPLDLIKNRMQLD 20 (75)
Q Consensus 5 ~~~~P~d~~k~~~q~~ 20 (75)
.+..|+|+.+.++...
T Consensus 6 SIdl~~~vLR~~l~~e 21 (40)
T smart00039 6 SIDLTFDLLRQRLELE 21 (40)
T ss_pred ccccHHHHHHHHHHHH
Confidence 4667899999888765
No 64
>PF11247 DUF2675: Protein of unknown function (DUF2675) ; InterPro: IPR022611 Members in this family of proteins include Bacteriophage T7 gene 5.5; they have no known function.
Probab=53.70 E-value=14 Score=19.28 Aligned_cols=34 Identities=9% Similarity=-0.006 Sum_probs=22.4
Q ss_pred HhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 41 VFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 41 ~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
+.++-+.+....+...|-.++.|.+-..+++.++
T Consensus 42 ~~~~~re~l~qaLT~G~egav~f~~k~g~R~~IK 75 (98)
T PF11247_consen 42 VSGFQREMLVQALTHGPEGAVAFVVKQGIREAIK 75 (98)
T ss_pred cCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 4555566666666666777777777776666655
No 65
>PF02939 UcrQ: UcrQ family; InterPro: IPR004205 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multi-enzyme complex [], which recognises a mitochondrial targeting presequence. The bc1 complex contains 11 subunits: 3 respiratory subunits (cytochrome b, cytochrome c1 and Rieske protein), 2 core proteins and 6 low molecular weight proteins. This family represents the 9.5 kDa subunit of the complex. This subunit together with cytochrome B binds to ubiquinone.; GO: 0008121 ubiquinol-cytochrome-c reductase activity; PDB: 1L0N_G 1SQQ_G 1PP9_G 1PPJ_T 2FYU_G 2BCC_G 1BCC_G 2A06_G 1NTZ_G 2YBB_g ....
Probab=53.38 E-value=29 Score=17.40 Aligned_cols=29 Identities=10% Similarity=0.071 Sum_probs=20.4
Q ss_pred hhccchHhHHHHHHHhhhHHhHHHHHHHH
Q psy13024 44 MYNGLSAGLLRQATYTTTRLGTYNLLLNK 72 (75)
Q Consensus 44 ly~G~~~~~~~~~~~~~~~~~~~e~~~~~ 72 (75)
.+|-....++..+|...+...+|+..++.
T Consensus 37 ~~RR~~~q~~~v~ppfi~~y~i~~Wa~~~ 65 (80)
T PF02939_consen 37 TFRRFRSQVLYVAPPFIVGYLIYDWANEE 65 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhhHHHHHHHHHHHHHHH
Confidence 34444556777788888888888877654
No 66
>PHA02759 virus coat protein VP2; Provisional
Probab=51.33 E-value=46 Score=19.56 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=27.2
Q ss_pred HHHHHhhc-----HhHhhccchHhHHHH--HHHhhhHHhHHHHHHHHHh
Q psy13024 33 TTILRKEG-----VFAMYNGLSAGLLRQ--ATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 33 ~~~~~~~G-----~~gly~G~~~~~~~~--~~~~~~~~~~~e~~~~~~~ 74 (75)
..+.++|| ..++|-|...-+..+ ...+......||..+.++.
T Consensus 59 y~i~qeegriiek~l~lflg~~~iw~sdnsa~aq~~a~iayeiv~p~f~ 107 (245)
T PHA02759 59 YAIRQEEGRIIEKALALFLGLLAIWASDNSAAAQAFALIAYEIVKPFFD 107 (245)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence 34556665 568898888776644 3445566667777776654
No 67
>COG1286 CvpA Uncharacterized membrane protein, required for colicin V production [General function prediction only]
Probab=49.83 E-value=40 Score=19.45 Aligned_cols=33 Identities=6% Similarity=0.067 Sum_probs=20.5
Q ss_pred hhcHhHhhccchHhHHHHHHHhhhHHhHHHHHH
Q psy13024 38 KEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLL 70 (75)
Q Consensus 38 ~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~ 70 (75)
-.++.|++||+...+.+....-+..|..|...+
T Consensus 14 ~~~~~g~~RGfi~e~~sl~s~i~a~~vA~~fy~ 46 (182)
T COG1286 14 ASFLLGLRRGFIREVLSLLSWILAAFVASLFYK 46 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 346788999988877665544444454444433
No 68
>PRK01622 OxaA-like protein precursor; Validated
Probab=47.28 E-value=27 Score=21.24 Aligned_cols=38 Identities=8% Similarity=0.108 Sum_probs=23.6
Q ss_pred HHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHH
Q psy13024 30 QAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLN 71 (75)
Q Consensus 30 ~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~ 71 (75)
.-.+++++++|+.-+..|+.|.++.. | +.+++|..+++
T Consensus 121 ~e~~~Lyk~~gi~P~~~g~lp~liQ~-P---if~~lf~~lr~ 158 (256)
T PRK01622 121 KEMMELYKSGNINPLAMGCLPLLIQM-P---ILSAFYYAIRR 158 (256)
T ss_pred HHHHHHHHHcCCCCchhhHHHHHHHH-H---HHHHHHHHHHh
Confidence 34678999999775444777755443 3 45555555554
No 69
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=46.27 E-value=10 Score=21.24 Aligned_cols=20 Identities=15% Similarity=0.307 Sum_probs=16.5
Q ss_pred HHHHHHHHhhcHhHhhccch
Q psy13024 30 QAFTTILRKEGVFAMYNGLS 49 (75)
Q Consensus 30 ~~~~~~~~~~G~~gly~G~~ 49 (75)
.-+.+.++.+|+.|.|+|-.
T Consensus 35 ~~~e~~~~~~gW~gsW~g~V 54 (163)
T COG4297 35 AQVEDHFKANGWFGSWRGGV 54 (163)
T ss_pred HHHHHHHhhcCCcccccccc
Confidence 34788999999999999854
No 70
>PF08887 GAD-like: GAD-like domain; InterPro: IPR014983 This domain is functionally uncharacterised, but it appears to be distantly related to the GAD domain IPR004115 from INTERPRO.
Probab=46.20 E-value=12 Score=19.86 Aligned_cols=23 Identities=13% Similarity=0.068 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHhhcHhHhhccch
Q psy13024 27 SSIQAFTTILRKEGVFAMYNGLS 49 (75)
Q Consensus 27 ~~~~~~~~~~~~~G~~gly~G~~ 49 (75)
-+.+.+.+.+++.|+.++..|+.
T Consensus 31 ~lP~~Ll~~W~~~G~g~~~dG~f 53 (109)
T PF08887_consen 31 KLPDELLEYWKEYGFGGYGDGLF 53 (109)
T ss_pred CCcHHHHHHHHHcCCchhcCcEE
Confidence 36788999999999998888865
No 71
>PF14514 TetR_C_9: Transcriptional regulator, TetR, C-terminal; PDB: 2QTQ_D 2RHA_A.
Probab=44.31 E-value=53 Score=17.80 Aligned_cols=38 Identities=11% Similarity=0.089 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhH
Q psy13024 28 SIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGT 65 (75)
Q Consensus 28 ~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~ 65 (75)
+.+.+..++++.=-.|.+|.+-|..+-.....++.+.+
T Consensus 52 ~~~~l~~il~~GvaaG~fR~vDP~~~y~si~gl~~~~f 89 (129)
T PF14514_consen 52 LVDALRRILEEGVAAGVFRPVDPRLFYISIIGLCYFYF 89 (129)
T ss_dssp HHHHHHHHHHHHHHTTSB-S--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHHHH
Confidence 45677777744334799999888877766665555544
No 72
>COG0650 HyfC Formate hydrogenlyase subunit 4 [Energy production and conversion]
Probab=40.23 E-value=31 Score=21.84 Aligned_cols=29 Identities=7% Similarity=0.119 Sum_probs=20.5
Q ss_pred HHHHHHHHhc-CCCCCCCHHHHHHHHHHhh
Q psy13024 11 DLIKNRMQLD-KAKEYRSSIQAFTTILRKE 39 (75)
Q Consensus 11 d~~k~~~q~~-~~~~~~~~~~~~~~~~~~~ 39 (75)
+.+|.|+|.+ +++-.+...|.+|-..||+
T Consensus 29 RKv~ARiq~R~GPpi~Qp~~d~lKll~Ke~ 58 (309)
T COG0650 29 RKVRARIQRRIGPPILQPYYDTLKLLGKET 58 (309)
T ss_pred HHHHHHHhcCCCCCcchHHHHHHHHhcccc
Confidence 5688899987 4455666777777776654
No 73
>COG5499 Predicted transcription regulator containing HTH domain [Transcription]
Probab=39.81 E-value=51 Score=17.76 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=11.0
Q ss_pred ccHHHHHHHHHhc
Q psy13024 8 QPLDLIKNRMQLD 20 (75)
Q Consensus 8 ~P~d~~k~~~q~~ 20 (75)
-|++++++.|+.-
T Consensus 60 ~pve~I~t~Md~~ 72 (120)
T COG5499 60 DPVEVIRTLMDQY 72 (120)
T ss_pred CHHHHHHHHHHHh
Confidence 4899999999875
No 74
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=37.15 E-value=41 Score=20.80 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=24.7
Q ss_pred chhhccccHHHHHHHHHhc------CCCCCCCHHHH---HHHHHHhhcHhHhh
Q psy13024 2 AATVFVQPLDLIKNRMQLD------KAKEYRSSIQA---FTTILRKEGVFAMY 45 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~------~~~~~~~~~~~---~~~~~~~~G~~gly 45 (75)
.+..+++|++.+|.-...- ....+....+. +.+..|++|+.++=
T Consensus 50 ~a~lis~p~~~~~~~~k~l~~~f~~~~~~~~~~i~~l~~la~~aRk~GlLaLE 102 (271)
T PRK06926 50 AALFISFSPKDLKLAPRVLKQAFQSQEDDVEELVQTFVSLSEKARREGLLSLE 102 (271)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3567889999999644321 11223333333 33455777876644
No 75
>PRK05973 replicative DNA helicase; Provisional
Probab=37.02 E-value=59 Score=19.65 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=23.7
Q ss_pred ccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHhhcHhH
Q psy13024 6 FVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFA 43 (75)
Q Consensus 6 ~~~P~d~~k~~~q~~~~~~~~~~~~~~~~~~~~~G~~g 43 (75)
.+.|+..+|.+--.-.....-..-.++-++..+||+.+
T Consensus 3 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~g~~~ 40 (237)
T PRK05973 3 LSAPIYHLKRKAKLLSRAQNIPLHEALDRIAAEEGFSS 40 (237)
T ss_pred cchHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhccch
Confidence 45688888765433222334456677788888888544
No 76
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=36.85 E-value=72 Score=20.14 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHH
Q psy13024 29 IQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLN 71 (75)
Q Consensus 29 ~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~ 71 (75)
-.-.+++++++|+.- +.|+.|.++.. | +.+++|+.+++
T Consensus 83 ~~e~~~Lyk~~gvnP-~~gclP~liQl-P---i~~~ly~~ir~ 120 (304)
T PRK03449 83 ALEMQKLQKEHGFNP-ILGCLPMLAQI-P---VFLGLFHVLRS 120 (304)
T ss_pred HHHHHHHHHHcCCCc-hHHHHHHHHHH-H---HHHHHHHHHHH
Confidence 345778889988754 46666655543 3 45566665554
No 77
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=36.59 E-value=78 Score=20.65 Aligned_cols=37 Identities=11% Similarity=0.173 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHH
Q psy13024 28 SIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLL 70 (75)
Q Consensus 28 ~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~ 70 (75)
.-..++++++++| ....|+.|.++..- +.+++|..++
T Consensus 81 ~QqEmmkLYKE~G--NPlaGCLP~LIQmP----IF~aLY~~LR 117 (375)
T PRK02654 81 QQEEMGKLMKEFG--NPLAGCLPLLVQMP----ILFALFATLR 117 (375)
T ss_pred HHHHHHHHHHHcC--CChhhHHHHHHHHH----HHHHHHHHHH
Confidence 3456788999999 55688888777643 4455555444
No 78
>PF07840 FadR_C: FadR C-terminal domain; InterPro: IPR008920 Bacteria regulate membrane fluidity by manipulating the relative levels of saturated and unsaturated fatty acids within the phospholipids of their membrane bilayers. In Escherichia coli, the transcription factor, FadR, functions as a switch that co-ordinately regulates the machinery required for fatty acid beta-oxidation and the expression of a key enzyme in fatty acid biosynthesis. This single repressor controls the transcription of the whole fad regulon []. Binding of fadR is specifically inhibited by long chain fatty acyl-CoA compounds. The crystal structure of FadR reveals a two domain dimeric molecule where the N-terminal winged-helix domain binds DNA (IPR000524 from INTERPRO), and the C-terminal domain binds acyl-CoA []. The binding of acyl-CoA to the C-terminal domain results in a conformational change that affects the DNA binding affinity of the N-terminal domain []. FadR is a member of the GntR family of bacterial transcription regulators. The DNA-binding domain is well conserved for this family, whereas the C-terminal effector-binding domain (IPR011711 from INTERPRO) is more variable, and is consequently used to define the GntR subfamilies []. The FadR group is the largest subgroup, and is characterised by an all-helical C-terminal domain composed of 6 to 7 alpha helices []. This entry represents the C-terminal domain of FadR.; GO: 0000062 fatty-acyl-CoA binding, 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0019217 regulation of fatty acid metabolic process; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A.
Probab=36.08 E-value=42 Score=19.24 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=19.5
Q ss_pred cHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 40 GVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 40 G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
|++|+|.-++.-+...--.......+|..+...+.
T Consensus 96 gfk~lY~rvg~~YFs~~~aR~la~~fY~~L~~~~~ 130 (164)
T PF07840_consen 96 GFKGLYSRVGRYYFSNPEARELALNFYRELLEACE 130 (164)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 56666665554444443344555666666665543
No 79
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=35.70 E-value=27 Score=20.60 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=11.6
Q ss_pred cccHHHHHHHHHh
Q psy13024 7 VQPLDLIKNRMQL 19 (75)
Q Consensus 7 ~~P~d~~k~~~q~ 19 (75)
-.|+|+.|+++|+
T Consensus 15 ~cPf~laKiq~~~ 27 (214)
T PF06837_consen 15 NCPFELAKIQIES 27 (214)
T ss_pred ccchHHHHHHHHh
Confidence 4699999999998
No 80
>PF03201 HMD: H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase; InterPro: IPR004889 This entry represents the C-terminal domain of H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenases. The N(5),N(10)-methylenetetrahydromethanopterin dehydrogenase system of methanogenic archaea is composed of H2-forming methylenetetrahydromethanopterin dehydrogenase (Hmd, represented by this entry) and F420-dependent methylenetetrahydromethanopterin dehydrogenase (IPR002844 from INTERPRO) [, ]. Hmd is an iron-sulphur-cluster-free enzyme that contains an intrinsic CO ligand bound to iron []. This domain is found at the C terminus of two distinct subgroups: one has been experimentally characterised as H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase (Hmd or HmdI), and the other one contains isozymes that have not been experimentally characterised (HmdII and HmdIII). Because all three isozyme forms are present in each of the corresponding sequenced genomes, it has been suggested that HmdII and HmdIII may not exhibit Hmd activity and may have a different biological function [].; GO: 0018537 coenzyme F420-dependent N5,N10-methenyltetrahydromethanopterin reductase activity, 0047068 N5,N10-methenyltetrahydromethanopterin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 3F46_A 2B0J_A 3DAG_A 3DAF_A 3H65_A 3F47_A.
Probab=34.86 E-value=46 Score=17.44 Aligned_cols=43 Identities=16% Similarity=0.370 Sum_probs=25.8
Q ss_pred hccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHH
Q psy13024 5 VFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQ 55 (75)
Q Consensus 5 ~~~~P~d~~k~~~q~~~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~ 55 (75)
.+..|-|.+..+.-. ....+..++.++|+.|+-+-+.|..+-.
T Consensus 32 il~AP~~mie~qi~~--------tL~tiasLv~~~Gi~gl~k~Lnp~al~~ 74 (98)
T PF03201_consen 32 ILGAPADMIEMQIIE--------TLQTIASLVETSGIDGLLKALNPEALLG 74 (98)
T ss_dssp TS---HHHHHHHHHH--------HHHHHHHHHHHH-GGGGGGTS-GGGGGG
T ss_pred HhcChHHHHHHHHHH--------HHHHHHHHHHHhhHHHHHHhcCHHHHHH
Confidence 344566655443322 3456788999999999999888876644
No 81
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=34.65 E-value=18 Score=19.29 Aligned_cols=19 Identities=26% Similarity=0.569 Sum_probs=14.7
Q ss_pred HHHHHhhcHhHhh----ccchHh
Q psy13024 33 TTILRKEGVFAMY----NGLSAG 51 (75)
Q Consensus 33 ~~~~~~~G~~gly----~G~~~~ 51 (75)
..++.+.|+.||| ||.+|.
T Consensus 20 INaLte~GITGFyl~eYkGmSP~ 42 (110)
T PF10126_consen 20 INALTEGGITGFYLHEYKGMSPQ 42 (110)
T ss_pred HHHHHhcCccEEEeEeecCCChH
Confidence 4466888999985 898875
No 82
>TIGR02757 conserved hypothetical protein TIGR02757. Members of this uncharacterized protein family are found sporadically, so far only among spirochetes, epsilon and delta proteobacteria, and Bacteroides. The function is unknown and its gene neighborhoods show little conservation.
Probab=34.19 E-value=13 Score=22.44 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=18.6
Q ss_pred HHHHHHHhhcH-hHhhccchHhHH
Q psy13024 31 AFTTILRKEGV-FAMYNGLSAGLL 53 (75)
Q Consensus 31 ~~~~~~~~~G~-~gly~G~~~~~~ 53 (75)
-+|.|+|++.+ .|+|+++.|+-+
T Consensus 149 FLRWMVR~d~VD~GlW~~i~ps~L 172 (229)
T TIGR02757 149 FLRWMIRKDEVDLGIWESFKPSDL 172 (229)
T ss_pred HHHhhccCCCCCCcCCCCCCHHHc
Confidence 47889999887 799999888643
No 83
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=33.73 E-value=1.1e+02 Score=19.65 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHH
Q psy13024 29 IQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLN 71 (75)
Q Consensus 29 ~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~ 71 (75)
-...+++++++|+.- ++|+.|.++.. -+.|++|+.+++
T Consensus 93 ~~e~~~Lykk~ginp-~~gclp~liQ~----Pif~alf~~l~~ 130 (329)
T PRK01315 93 SQEMMKLYKETGTNP-LSSCLPLLLQM----PIFFALYRVLDS 130 (329)
T ss_pred HHHHHHHHHHcCCCc-hHHHHHHHHHH----HHHHHHHHHHHH
Confidence 345667888888764 35666655443 345556655554
No 84
>PRK09110 flagellar motor protein MotA; Validated
Probab=33.25 E-value=56 Score=20.36 Aligned_cols=43 Identities=19% Similarity=0.174 Sum_probs=24.2
Q ss_pred hhhccccHHHHHHHHHhc-----CC-CCC---CCHHHHHHH---HHHhhcHhHhh
Q psy13024 3 ATVFVQPLDLIKNRMQLD-----KA-KEY---RSSIQAFTT---ILRKEGVFAMY 45 (75)
Q Consensus 3 ~~~~~~P~d~~k~~~q~~-----~~-~~~---~~~~~~~~~---~~~~~G~~gly 45 (75)
+..+.+|++.+|.-...- .+ ... ....+.+.+ ..|++|+..+=
T Consensus 44 a~lv~~p~~~i~~~~k~~~~~f~~~~~~~~~~~~li~~l~~l~~~aRk~GllaLE 98 (283)
T PRK09110 44 AFIVGNPGKAIKATLKALPKLFKGPKYKKADYMDLLALLYELLRKARQEGMMALE 98 (283)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 557889999999665432 11 112 223333333 55778876643
No 85
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=33.10 E-value=67 Score=21.59 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=13.7
Q ss_pred hhccccHHHHHHHHHhc
Q psy13024 4 TVFVQPLDLIKNRMQLD 20 (75)
Q Consensus 4 ~~~~~P~d~~k~~~q~~ 20 (75)
..+..|+||++.-+-+.
T Consensus 270 igLL~PleVi~Aa~~Ay 286 (505)
T COG3046 270 IGLLTPLEVIRAALKAY 286 (505)
T ss_pred ccCCCHHHHHHHHHHhh
Confidence 45678999999888765
No 86
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=32.48 E-value=88 Score=18.23 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=21.1
Q ss_pred ccchHhHHHHHHHhhhHHhHHHHHHHHHhC
Q psy13024 46 NGLSAGLLRQATYTTTRLGTYNLLLNKFKA 75 (75)
Q Consensus 46 ~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 75 (75)
+|..|..+-........+.+++.+++.+.+
T Consensus 178 kG~iP~~lvn~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08903 178 SGYLPQTVVDSFFPASMAEFYNNLTKAVKA 207 (208)
T ss_pred CCCcCHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 577777776666666677788888877653
No 87
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=32.18 E-value=1e+02 Score=17.57 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHH
Q psy13024 28 SIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLN 71 (75)
Q Consensus 28 ~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~ 71 (75)
.....+++++++|+.- ++|+.+.++. +| +.+++|..+++
T Consensus 52 ~~~e~~~l~k~~~~~p-~~~~lp~liQ-~P---if~~~~~~lr~ 90 (181)
T TIGR03592 52 LQQEMMKLYKEEGVNP-LGGCLPLLIQ-MP---IFIALYQVLRR 90 (181)
T ss_pred HHHHHHHHHHHhCCCc-HHHHHHHHHH-HH---HHHHHHHHHHh
Confidence 3445778889998764 4566655444 34 45666665554
No 88
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=32.15 E-value=16 Score=15.80 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=3.2
Q ss_pred HHHHHHHHHHhhcHhHh
Q psy13024 28 SIQAFTTILRKEGVFAM 44 (75)
Q Consensus 28 ~~~~~~~~~~~~G~~gl 44 (75)
...-+.+-|+++|+.||
T Consensus 33 Tv~~w~kr~~~~G~~gL 49 (50)
T PF13384_consen 33 TVYRWIKRYREEGLEGL 49 (50)
T ss_dssp HHHHHHT----------
T ss_pred HHHHHHHHccccccccc
Confidence 33445555677787665
No 89
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=31.72 E-value=97 Score=18.14 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=20.9
Q ss_pred ccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 46 NGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 46 ~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
+|..|.++-+.......+-+++.+|+.+.
T Consensus 179 ~G~lP~~lvN~~~~~~~~~~~~~LR~~~~ 207 (209)
T cd08906 179 KGRLPRYLIHQSLAATMFEFASHLRQRIR 207 (209)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777666666777777788887765
No 90
>PRK06743 flagellar motor protein MotP; Reviewed
Probab=30.22 E-value=64 Score=19.79 Aligned_cols=43 Identities=14% Similarity=0.219 Sum_probs=23.9
Q ss_pred hhhccccHHHHHHHHHhc------CCCCCCCHHHH---HHHHHHhhcHhHhh
Q psy13024 3 ATVFVQPLDLIKNRMQLD------KAKEYRSSIQA---FTTILRKEGVFAMY 45 (75)
Q Consensus 3 ~~~~~~P~d~~k~~~q~~------~~~~~~~~~~~---~~~~~~~~G~~gly 45 (75)
+..+.+|++.++.-...- ....+....+. +.+..|++|+..+=
T Consensus 43 a~li~~p~~~i~~~~k~~~~~f~~~~~~~~~~i~~l~~la~~aRr~GlLaLE 94 (254)
T PRK06743 43 TIVVAYRFGEIKKYTKSIFTVLHRREEDLEQLTDLFVDFSKKSKKHGLLSLE 94 (254)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 567888999988655432 12223333333 33355677766543
No 91
>PRK11525 dinD DNA-damage-inducible protein D; Provisional
Probab=30.16 E-value=41 Score=21.00 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=15.3
Q ss_pred HHHHhhcHhHhhccchHhHHH
Q psy13024 34 TILRKEGVFAMYNGLSAGLLR 54 (75)
Q Consensus 34 ~~~~~~G~~gly~G~~~~~~~ 54 (75)
.++++.|..|||.|.....++
T Consensus 163 aif~~~Gy~gLygg~~~~~ik 183 (279)
T PRK11525 163 AIFQNHGYQGLYGGLDTKAIH 183 (279)
T ss_pred hhhhccchhHHhcCcCHHHHH
Confidence 367788999999777665443
No 92
>PF13518 HTH_28: Helix-turn-helix domain
Probab=30.01 E-value=57 Score=13.93 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHhhcHhHhhc
Q psy13024 27 SSIQAFTTILRKEGVFAMYN 46 (75)
Q Consensus 27 ~~~~~~~~~~~~~G~~gly~ 46 (75)
+....+.+.++++|+.||..
T Consensus 27 ~tv~~w~~~y~~~G~~~l~~ 46 (52)
T PF13518_consen 27 STVYRWIKRYREGGIEGLKP 46 (52)
T ss_pred hHHHHHHHHHHhcCHHHhcc
Confidence 44556777788888877653
No 93
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.26 E-value=60 Score=17.22 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhcHhHhhccch
Q psy13024 28 SIQAFTTILRKEGVFAMYNGLS 49 (75)
Q Consensus 28 ~~~~~~~~~~~~G~~gly~G~~ 49 (75)
..++++++++++|+-.++-+.+
T Consensus 56 ~Y~tF~~mlreepiE~v~p~~~ 77 (111)
T COG4043 56 VYDTFEEMLREEPIENVLPDVP 77 (111)
T ss_pred ehhHHHHHHHhcChhhhCCCCc
Confidence 4688999999999988776544
No 94
>PRK12482 flagellar motor protein MotA; Provisional
Probab=27.55 E-value=1.5e+02 Score=18.64 Aligned_cols=44 Identities=11% Similarity=0.189 Sum_probs=24.8
Q ss_pred chhhccccHHHHHHHHHhc-----CCCCC----CCHHH---HHHHHHHhhcHhHhh
Q psy13024 2 AATVFVQPLDLIKNRMQLD-----KAKEY----RSSIQ---AFTTILRKEGVFAMY 45 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~-----~~~~~----~~~~~---~~~~~~~~~G~~gly 45 (75)
.+..+++|++.+|.-+..- ++... ....+ -+.+..|++|+.++=
T Consensus 43 ga~lis~p~~~~~~~~k~~~~~f~~~~~~~~~y~~~i~~lv~ls~~aRr~GllaLE 98 (287)
T PRK12482 43 GAMILGNPKSVLKEMWHQIKGVIRRKEYGVEFQRQLLLLLYELLEMVQEGGLKRLD 98 (287)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3567889999999655432 11111 23322 244456778877644
No 95
>PF06812 ImpA-rel_N: ImpA-related N-terminal; InterPro: IPR010657 This entry represents a conserved region located towards the N-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=27.17 E-value=37 Score=15.75 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=13.7
Q ss_pred HHHHHHhhcHhHhhccchH
Q psy13024 32 FTTILRKEGVFAMYNGLSA 50 (75)
Q Consensus 32 ~~~~~~~~G~~gly~G~~~ 50 (75)
.....+.+|+.|+..|+..
T Consensus 27 ~~a~~~~~g~~gl~~gl~l 45 (62)
T PF06812_consen 27 TEALLRLEGLAGLAEGLEL 45 (62)
T ss_pred HHHHHHccChhHHHHHHHH
Confidence 3445588899998887653
No 96
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=26.97 E-value=1.3e+02 Score=17.58 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=20.1
Q ss_pred ccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 46 NGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 46 ~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
+|..|.++-........+-+++.+++.+.
T Consensus 179 kG~iP~~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 179 KGWLPKSIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred CCCCCHHHHHHHhHHhHHHHHHHHHHHHh
Confidence 46677766666666677777777777664
No 97
>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.
Probab=26.72 E-value=57 Score=16.89 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=14.5
Q ss_pred hhhccccHHHHHHHHHhc
Q psy13024 3 ATVFVQPLDLIKNRMQLD 20 (75)
Q Consensus 3 ~~~~~~P~d~~k~~~q~~ 20 (75)
+.++..-+|+++..||.+
T Consensus 15 s~~L~~T~e~l~~~M~An 32 (104)
T PF05415_consen 15 SECLGVTLEKLDNLMQAN 32 (104)
T ss_pred HHHhcchHHHHHHHHHhh
Confidence 445667899999999987
No 98
>PF01019 G_glu_transpept: Gamma-glutamyltranspeptidase; InterPro: IPR000101 Gamma-glutamyltranspeptidase (2.3.2.2 from EC) (GGT) [] catalyzes the transfer of the gamma-glutamyl moiety of glutathione to an acceptor that may be an amino acid, a peptide or water (forming glutamate). GGT plays a key role in the gamma-glutamyl cycle, a pathway for the synthesis and degradation of glutathione and drug and xenobiotic detoxification []. In prokaryotes and eukaryotes, it is an enzyme that consists of two polypeptide chains, a heavy and a light subunit, processed from a single chain precursor by an autocatalytic cleavage. The active site of GGT is known to be located in the light subunit. The sequences of mammalian and bacterial GGT show a number of regions of high similarity []. Pseudomonas cephalosporin acylases (3.5.1 from EC) that convert 7-beta-(4-carboxybutanamido)-cephalosporanic acid (GL-7ACA) into 7-aminocephalosporanic acid (7ACA) and glutaric acid are evolutionary related to GGT and also show some GGT activity []. Like GGT, these GL-7ACA acylases, are also composed of two subunits. As an autocatalytic peptidase GGT belongs to MEROPS peptidase family T3 (gamma-glutamyltransferase family, clan PB(T)). The active site residue for members of this family and family T1 is C-terminal to the autolytic cleavage site. The type example is gamma-glutamyltransferase 1 from Escherichia coli. ; GO: 0003840 gamma-glutamyltransferase activity; PDB: 2DBX_A 2Z8K_D 2Z8I_B 2DBU_D 2E0X_B 2DBW_B 2E0W_B 2DG5_A 2E0Y_C 2Z8J_C ....
Probab=25.78 E-value=1.5e+02 Score=19.97 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHhhcHhHhhccchH-hHHHHHHHhhhHHhH
Q psy13024 27 SSIQAFTTILRKEGVFAMYNGLSA-GLLRQATYTTTRLGT 65 (75)
Q Consensus 27 ~~~~~~~~~~~~~G~~gly~G~~~-~~~~~~~~~~~~~~~ 65 (75)
.+.++++.+ .++|...||+|-.+ .++..+...+..+..
T Consensus 161 ~LA~TL~~i-a~~G~~~FY~G~lA~~iv~~~~~~GG~lt~ 199 (510)
T PF01019_consen 161 ELADTLERI-AEEGPDAFYRGELAEKIVADVQANGGLLTL 199 (510)
T ss_dssp HHHHHHHHH-HHHTTHHHHSCHHHHHHHHHHHHTT-S--H
T ss_pred HHHHHHHHH-HhcCchhhcCChHHHHHHHHHHhccCCccH
Confidence 345555555 66899999999555 455555544444443
No 99
>PF08359 TetR_C_4: YsiA-like protein, C-terminal region; InterPro: IPR013570 The members of this family are thought to be TetR-type (tetracycline resistance) transcriptional regulators that bear particular similarity to YsiA (P94548 from SWISSPROT). This entry represents the C-terminal domain.; PDB: 1VI0_B.
Probab=25.14 E-value=1.2e+02 Score=15.89 Aligned_cols=43 Identities=9% Similarity=0.162 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcHhHhhc-cchHhHHHHHHHhhhHHhHHHHHH
Q psy13024 28 SIQAFTTILRKEGVFAMYN-GLSAGLLRQATYTTTRLGTYNLLL 70 (75)
Q Consensus 28 ~~~~~~~~~~~~G~~gly~-G~~~~~~~~~~~~~~~~~~~e~~~ 70 (75)
..+.+.++++++--.|-+| .+.+..+......++...++.+..
T Consensus 69 ~~~~i~~iI~eG~~~Gefr~d~d~~~~~~~i~G~i~~~v~~w~~ 112 (133)
T PF08359_consen 69 YLRIIEEIIEEGQEQGEFRKDLDPELAARFIFGMINHTVLDWVL 112 (133)
T ss_dssp HHHHHHHHHHHHHHTTSB-TT--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555655544578886 688888888888888777766543
No 100
>PHA01749 coat protein
Probab=25.13 E-value=1.2e+02 Score=16.10 Aligned_cols=44 Identities=18% Similarity=0.389 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHhhcH----hHhhccchHhHHHH
Q psy13024 11 DLIKNRMQLDKAKEYRSSIQAFTTILRKEGV----FAMYNGLSAGLLRQ 55 (75)
Q Consensus 11 d~~k~~~q~~~~~~~~~~~~~~~~~~~~~G~----~gly~G~~~~~~~~ 55 (75)
.+.....|.+. +++.+.-+-...++.+-|+ +.+|.|+...+.|.
T Consensus 39 ~iaqqnfqtnv-pkftsvne~vsavltqygvtgpnraiyqgfglkvara 86 (134)
T PHA01749 39 PVAQQNFQTNV-PKFTSVNENVSAVLTQYGITGPNRAIYQGFGLKVARA 86 (134)
T ss_pred HHHHHhhhcCC-ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHH
Confidence 34444445443 3555555555556666554 56888887665554
No 101
>PF07037 DUF1323: Putative transcription regulator (DUF1323); InterPro: IPR010749 This family consists of several hypothetical Enterobacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=24.34 E-value=67 Score=17.53 Aligned_cols=15 Identities=27% Similarity=0.592 Sum_probs=11.1
Q ss_pred HHHHHHhhcHhHhhc
Q psy13024 32 FTTILRKEGVFAMYN 46 (75)
Q Consensus 32 ~~~~~~~~G~~gly~ 46 (75)
+..++..||++||..
T Consensus 101 L~~lL~REGI~G~L~ 115 (122)
T PF07037_consen 101 LTSLLLREGISGFLQ 115 (122)
T ss_pred HHHHHHHhhHHHHHH
Confidence 455777889988765
No 102
>COG1696 DltB Predicted membrane protein involved in D-alanine export [Cell envelope biogenesis, outer membrane]
Probab=24.14 E-value=1.8e+02 Score=19.44 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=27.5
Q ss_pred HHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHH
Q psy13024 36 LRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLL 70 (75)
Q Consensus 36 ~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~ 70 (75)
+-+==+.|+|.|.....+--....++.+..++..+
T Consensus 312 ~~~~li~g~WHG~~w~fIlwG~~hg~~l~~~~~~~ 346 (425)
T COG1696 312 LINFLLMGLWHGLGWTFILWGLLHGVLLVLYRLIS 346 (425)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33334678999999998888888888888888766
No 103
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=23.52 E-value=1.3e+02 Score=17.96 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=19.6
Q ss_pred ccchHhHHHHHHHhhhHHhHHHHHHHHH
Q psy13024 46 NGLSAGLLRQATYTTTRLGTYNLLLNKF 73 (75)
Q Consensus 46 ~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 73 (75)
+|..|..+-+.......+-+|..+++.+
T Consensus 174 kG~LPqsiIdq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 174 RGMLPQSAVDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred CCCccHHHHHHHhhHHHHHHHHHHHHhc
Confidence 5777776666666677777777777765
No 104
>PF00440 TetR_N: Bacterial regulatory proteins, tetR family; InterPro: IPR001647 This entry represents a DNA-binding domain with a helix-turn-helix (HTH) structure that is found in several bacterial and archaeal transcriptional regulators, such as TetR, the tetracycline resistance repressor. Numerous other transcriptional regulatory proteins also contain HTH-type DNA-binding domains, and can be grouped into subfamiles based on sequence similarity. The domain represented by this entry is found in a subfamily of proteins that includes the transcriptional regulators TetR, TetC, AcrR, BetI, Bm3R1, EnvR, QacR, MtrR, TcmR, Ttk, YbiH, and YhgD [, , ]. Many of these proteins function as repressors that control the level of susceptibility to hydrophobic antibiotics and detergents. They all have similar molecular weights, ranging from 21 to 25 kDa. The helix-turn-helix motif is located in the initial third of the protein. The 3D structure of the homodimeric TetR protein complexed with 7-chloro-tetracycline-magnesium has been determined to 2.1 A resolution []. TetR folds into ten alpha-helices with connecting turns and loops. The three N-terminal alpha-helices of the repressor form the DNA-binding domain: this structural motif encompasses an HTH fold with an inverse orientation compared with that of other DNA-binding proteins.; GO: 0003677 DNA binding; PDB: 3NPI_B 3IUV_A 3CCY_A 2JK3_A 2FX0_A 2JJ7_A 2WV1_B 3BTI_D 3BR6_E 3BR5_A ....
Probab=23.14 E-value=78 Score=13.50 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=9.2
Q ss_pred HHHHHHHHHhhcHhH
Q psy13024 29 IQAFTTILRKEGVFA 43 (75)
Q Consensus 29 ~~~~~~~~~~~G~~g 43 (75)
.++..+++.++|+.+
T Consensus 2 l~aa~~l~~~~G~~~ 16 (47)
T PF00440_consen 2 LEAALELFAEKGYEA 16 (47)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCHHh
Confidence 455667777777443
No 105
>PF13467 RHH_4: Ribbon-helix-helix domain; PDB: 3KK4_C.
Probab=22.92 E-value=96 Score=14.99 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=11.7
Q ss_pred CHHHHHHHHHHhhcH
Q psy13024 27 SSIQAFTTILRKEGV 41 (75)
Q Consensus 27 ~~~~~~~~~~~~~G~ 41 (75)
.+|+++.++.+++|.
T Consensus 21 ~FW~~L~eiA~~~g~ 35 (67)
T PF13467_consen 21 AFWDALEEIAAREGL 35 (67)
T ss_dssp HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCC
Confidence 478899999888874
No 106
>COG0096 RpsH Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]
Probab=22.64 E-value=1.2e+02 Score=16.82 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=26.9
Q ss_pred ccccHHHHHHHHHhcC-------CCCCCCHHHHHHHHHHhhcHhH
Q psy13024 6 FVQPLDLIKNRMQLDK-------AKEYRSSIQAFTTILRKEGVFA 43 (75)
Q Consensus 6 ~~~P~d~~k~~~q~~~-------~~~~~~~~~~~~~~~~~~G~~g 43 (75)
.+.|+.-.-||+++.. ..+...+...+.+++++||.-+
T Consensus 3 ~~DpiAdmltrIrNa~~~~~~~v~~P~SKl~~~il~vLk~eGYI~ 47 (132)
T COG0096 3 MTDPLADMLTRIRNAERAKKEVVSMPASKLKGAILKVLKKEGYIK 47 (132)
T ss_pred cccHHHHHHHHhHhHHHhccceeecchHHHHHHHHHHHHHcCCcc
Confidence 4568888888888762 2344556677888999998644
No 107
>PF06043 Reo_P9: Reovirus P9-like family; InterPro: IPR009268 These proteins of unknown function are found in Rice black streaked dwarf virus (RBSDV) and other viruses.; PDB: 3VJJ_B.
Probab=22.41 E-value=95 Score=19.69 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=18.9
Q ss_pred hhhccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHhhcH
Q psy13024 3 ATVFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGV 41 (75)
Q Consensus 3 ~~~~~~P~d~~k~~~q~~~~~~~~~~~~~~~~~~~~~G~ 41 (75)
++.--+|+|.+|-.+++- -+....+++.++++|+
T Consensus 239 atF~nypf~~lR~~L~s~-----is~p~~i~q~i~k~GL 272 (333)
T PF06043_consen 239 ATFDNYPFDLLRFQLSSL-----ISVPNSILQRIAKDGL 272 (333)
T ss_dssp HH-TT-BHHHHHHH-SS----------HHHHHHHHHS-S
T ss_pred ecCCCCcHHHHHHHhhhh-----cCChHHHHHHHHhcCc
Confidence 344568999999888754 2445677888888773
No 108
>PF09674 DUF2400: Protein of unknown function (DUF2400); InterPro: IPR014127 Members of this uncharacterised protein family are found sporadically, so far only among spirochetes, epsilon and delta proteobacteria, and Bacteroides. The function is unknown and its gene neighbourhoods show little conservation.
Probab=22.32 E-value=29 Score=20.99 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=17.9
Q ss_pred HHHHHHHhhc-H-hHhhccchHhHH
Q psy13024 31 AFTTILRKEG-V-FAMYNGLSAGLL 53 (75)
Q Consensus 31 ~~~~~~~~~G-~-~gly~G~~~~~~ 53 (75)
-+|.|+|++. + .|+|+++.|+-+
T Consensus 151 FLRWMVR~d~~VD~GlW~~i~ps~L 175 (232)
T PF09674_consen 151 FLRWMVRKDSPVDFGLWSSIDPSDL 175 (232)
T ss_pred HHHhhccCCCCCCCcCCCCCCHHHc
Confidence 3788998876 6 799999887643
No 109
>PF09958 DUF2192: Uncharacterized protein conserved in archaea (DUF2192); InterPro: IPR018693 This family of various hypothetical archaeal proteins has no known function.
Probab=21.99 E-value=69 Score=19.50 Aligned_cols=26 Identities=15% Similarity=0.393 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHhhcHhHhhccchHh
Q psy13024 25 YRSSIQAFTTILRKEGVFAMYNGLSAG 51 (75)
Q Consensus 25 ~~~~~~~~~~~~~~~G~~gly~G~~~~ 51 (75)
...+.+.+++.|++.|+.- +||..|.
T Consensus 28 R~~lv~~L~~~Y~~~gIeP-~RG~s~~ 53 (231)
T PF09958_consen 28 REELVELLREVYEENGIEP-FRGLSPP 53 (231)
T ss_pred HHHHHHHHHHHHHHcCCCc-CCCCCcc
Confidence 4467788999999999765 5666653
No 110
>KOG1484|consensus
Probab=21.86 E-value=65 Score=20.84 Aligned_cols=39 Identities=26% Similarity=0.128 Sum_probs=26.8
Q ss_pred cccH--HHHHHHHHhcCCCCCCCHHHHHHHHHHhhcHhHhh
Q psy13024 7 VQPL--DLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFAMY 45 (75)
Q Consensus 7 ~~P~--d~~k~~~q~~~~~~~~~~~~~~~~~~~~~G~~gly 45 (75)
+.|+ +..++-+|..++..-..+.+|++++-..+|+..+-
T Consensus 255 v~PL~k~s~~iLLq~tPp~~~~~l~~cl~~Is~~~gV~~v~ 295 (354)
T KOG1484|consen 255 VLPLLKYSGKILLQRTPPHLENSLKQCLRQISTLDGVTSVQ 295 (354)
T ss_pred HHHHHHHHHHHHHhcCChhhhhHHHHHHHHhhccccceeec
Confidence 3455 45667778776555557778899988888876544
No 111
>cd08816 CARD_RIG-I_1 Caspase activation and recruitment domain found in RIG-I, first repeat. Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), first repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction doma
Probab=21.85 E-value=1.2e+02 Score=15.62 Aligned_cols=12 Identities=17% Similarity=0.337 Sum_probs=5.4
Q ss_pred HhhhHHhHHHHH
Q psy13024 58 YTTTRLGTYNLL 69 (75)
Q Consensus 58 ~~~~~~~~~e~~ 69 (75)
.++-+-+++|.+
T Consensus 76 ~~agY~gl~eai 87 (89)
T cd08816 76 YAAGYTGLCEAI 87 (89)
T ss_pred HhcCcccHHHHh
Confidence 334444555443
No 112
>smart00263 LYZ1 Alpha-lactalbumin / lysozyme C.
Probab=21.74 E-value=83 Score=17.24 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhcHhH
Q psy13024 28 SIQAFTTILRKEGVFA 43 (75)
Q Consensus 28 ~~~~~~~~~~~~G~~g 43 (75)
...|+++|++++|+..
T Consensus 91 dv~CAk~I~~~~G~~a 106 (127)
T smart00263 91 DVKCAKKIVSDQGIDA 106 (127)
T ss_pred HHHHHHHHHHHcCchH
Confidence 3578999999988765
No 113
>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]
Probab=21.69 E-value=46 Score=17.54 Aligned_cols=20 Identities=20% Similarity=0.506 Sum_probs=14.9
Q ss_pred HHHHHHhhcHhHhh----ccchHh
Q psy13024 32 FTTILRKEGVFAMY----NGLSAG 51 (75)
Q Consensus 32 ~~~~~~~~G~~gly----~G~~~~ 51 (75)
...+....|+.||| ||++|.
T Consensus 19 aiN~mad~GiTGFfl~eYrGvsPd 42 (110)
T COG4075 19 AINIMADAGITGFFLHEYRGVSPD 42 (110)
T ss_pred HHHHHHhcCcceEEEEEecCcChh
Confidence 44567788998874 788875
No 114
>COG3084 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.41 E-value=1.3e+02 Score=15.06 Aligned_cols=26 Identities=8% Similarity=0.092 Sum_probs=20.3
Q ss_pred CCCCCCCHHHHHHHHHHhhcHhHhhc
Q psy13024 21 KAKEYRSSIQAFTTILRKEGVFAMYN 46 (75)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~G~~gly~ 46 (75)
...+..|+.+.+.++.++.|+.|-..
T Consensus 18 ~k~~dlnl~q~lqkla~eagf~~~l~ 43 (88)
T COG3084 18 QKEPDLNLLQFLQKLAKESGFDGELA 43 (88)
T ss_pred ccCCCccHHHHHHHHHHHhcccccHH
Confidence 44567799999999999998776443
No 115
>PLN02332 membrane bound O-acyl transferase (MBOAT) family protein
Probab=21.04 E-value=2.7e+02 Score=18.65 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=26.6
Q ss_pred HHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHH
Q psy13024 33 TTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNK 72 (75)
Q Consensus 33 ~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~ 72 (75)
...+-.=.++|+|.|..+.+.-.....++...+...+++.
T Consensus 345 ~~~~~t~~~sa~WHG~~~gYyl~fl~~~l~~~~er~~~r~ 384 (465)
T PLN02332 345 FQLLATQTVSAVWHGLYPGYILFFVQSALMIAGSRVIYRW 384 (465)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444578999999998887777666666555544433
No 116
>PRK02463 OxaA-like protein precursor; Provisional
Probab=20.92 E-value=1.7e+02 Score=18.53 Aligned_cols=26 Identities=15% Similarity=0.232 Sum_probs=17.4
Q ss_pred HHHHHHHHhhcHhHhhc-cchHhHHHH
Q psy13024 30 QAFTTILRKEGVFAMYN-GLSAGLLRQ 55 (75)
Q Consensus 30 ~~~~~~~~~~G~~gly~-G~~~~~~~~ 55 (75)
..+.++++++|+.-+-. |+.|.++..
T Consensus 121 ~em~~lyke~ginp~~~~GCLP~LIQ~ 147 (307)
T PRK02463 121 TELMAAQRENGISMLGGIGCLPLLIQM 147 (307)
T ss_pred HHHHHHHHHcCCCCccccchHHHHHHH
Confidence 34678899999765432 677766554
No 117
>PF08300 HCV_NS5a_1a: Hepatitis C virus non-structural 5a zinc finger domain; InterPro: IPR013192 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in the non-structural 5a protein (NS5a) in Hepatitis C virus. The molecular function of NS5a is uncertain, but it is phosphorylated when expressed in mammalian cells. It is thought to interact with the dsRNA dependent (interferon inducible) kinase PKR, P19525 from SWISSPROT [, ]. This region corresponds to the N-terminal zinc binding domain (1a) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003968 RNA-directed RNA polymerase activity, 0004252 serine-type endopeptidase activity, 0008270 zinc ion binding, 0017111 nucleoside-triphosphatase activity, 0006355 regulation of transcription, DNA-dependent, 0006915 apoptosis, 0030683 evasion by virus of host immune response, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane; PDB: 1ZH1_B 3FQM_A 3FQQ_B.
Probab=20.58 E-value=20 Score=17.14 Aligned_cols=11 Identities=18% Similarity=0.401 Sum_probs=4.1
Q ss_pred hhcHhHhhccc
Q psy13024 38 KEGVFAMYNGL 48 (75)
Q Consensus 38 ~~G~~gly~G~ 48 (75)
++|.+|.|+|-
T Consensus 7 qrGy~G~W~Gd 17 (62)
T PF08300_consen 7 QRGYKGVWRGD 17 (62)
T ss_dssp ---B-SEEES-
T ss_pred CCCCCcEEcCC
Confidence 45666767663
Done!