Query psy13024
Match_columns 75
No_of_seqs 111 out of 1387
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 17:24:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13024.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13024hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 99.9 4.6E-23 1.6E-27 122.8 4.6 73 2-74 215-287 (303)
2 2lck_A Mitochondrial uncouplin 99.8 2.4E-21 8.2E-26 115.4 6.7 73 2-74 117-193 (303)
3 1okc_A ADP, ATP carrier protei 99.8 1.8E-21 6.1E-26 115.6 6.0 72 2-73 125-201 (297)
4 1okc_A ADP, ATP carrier protei 99.8 1.2E-20 4E-25 112.1 7.5 72 2-73 20-98 (297)
5 2acm_A Mucin-1; auto-catalytic 54.8 0.97 3.3E-05 20.8 -1.4 19 27-45 41-59 (66)
6 3tgu_G UQCRQ, mitochondrial ub 51.9 20 0.00068 17.3 3.4 27 46-72 39-65 (81)
7 2l5r_A Antimicrobial peptide a 43.3 15 0.0005 13.4 1.5 18 33-51 3-20 (26)
8 1pp9_G Ubiquinol-cytochrome C 37.1 38 0.0013 16.3 3.9 33 40-72 33-65 (81)
9 2z5i_I TM, tropomyosin alpha-1 26.5 24 0.00083 14.7 0.8 12 9-20 4-15 (40)
10 3cx5_H Cytochrome B-C1 complex 24.2 57 0.0019 16.2 2.0 29 44-72 47-75 (93)
11 1qey_A MNT-C, protein (regulat 22.2 49 0.0017 12.9 1.9 11 28-38 19-29 (31)
12 1yro_A Alpha-lactalbumin; Arg2 20.4 67 0.0023 16.7 1.9 16 28-43 88-103 (123)
13 2fbd_A Lysozyme 1; digestive l 20.0 74 0.0025 16.5 2.0 16 28-43 89-104 (122)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.87 E-value=4.6e-23 Score=122.82 Aligned_cols=73 Identities=30% Similarity=0.474 Sum_probs=67.6
Q ss_pred chhhccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 2 AATVFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
+++++++|+|++|+|+|.+....|.+.++++++++++||++|||||+.++++|.+|.++++|.+||.+++.+.
T Consensus 215 ~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 215 CTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4678899999999999998666799999999999999999999999999999999999999999999987653
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.85 E-value=2.4e-21 Score=115.40 Aligned_cols=73 Identities=32% Similarity=0.561 Sum_probs=66.8
Q ss_pred chhhccccHHHHHHHHHhcCC----CCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHHh
Q psy13024 2 AATVFVQPLDLIKNRMQLDKA----KEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKFK 74 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~~----~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 74 (75)
++.++++|+|++|+|+|.+.. ..|.+.++++++++++||++|||||+.+++++.+|.++++|.+||.+++.+.
T Consensus 117 ~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~ 193 (303)
T 2lck_A 117 LAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLL 193 (303)
T ss_dssp HHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466889999999999999842 3688999999999999999999999999999999999999999999998763
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.85 E-value=1.8e-21 Score=115.57 Aligned_cols=72 Identities=22% Similarity=0.486 Sum_probs=65.8
Q ss_pred chhhccccHHHHHHHHHhcC-----CCCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHH
Q psy13024 2 AATVFVQPLDLIKNRMQLDK-----AKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKF 73 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~-----~~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 73 (75)
++.++++|+|++|+|+|.+. ...|.++++++++++++||++|||||+.+++++.+|.++++|.+||.+++.+
T Consensus 125 ~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~ 201 (297)
T 1okc_A 125 TSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML 201 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999999983 2457899999999999999999999999999999999999999999999864
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.83 E-value=1.2e-20 Score=112.06 Aligned_cols=72 Identities=19% Similarity=0.354 Sum_probs=65.6
Q ss_pred chhhccccHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHhhcHhHhhccchHhHHHHHHHhhhHHhHHHHHHHHH
Q psy13024 2 AATVFVQPLDLIKNRMQLDKA-------KEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNKF 73 (75)
Q Consensus 2 ~~~~~~~P~d~~k~~~q~~~~-------~~~~~~~~~~~~~~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 73 (75)
++.++++|+|++|+|+|.+.. ..|.++++++++++++||++|||||+.+++++.+|.++++|.+||.+++.+
T Consensus 20 ~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~ 98 (297)
T 1okc_A 20 ISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIF 98 (297)
T ss_dssp HHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999732 358899999999999999999999999999999999999999999999853
No 5
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=54.77 E-value=0.97 Score=20.80 Aligned_cols=19 Identities=16% Similarity=0.371 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHhhcHhHhh
Q psy13024 27 SSIQAFTTILRKEGVFAMY 45 (75)
Q Consensus 27 ~~~~~~~~~~~~~G~~gly 45 (75)
++.+.+.++++++++.|++
T Consensus 41 ~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 41 DISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHccCCeeeee
Confidence 5677788899999988865
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=51.87 E-value=20 Score=17.34 Aligned_cols=27 Identities=11% Similarity=0.018 Sum_probs=19.6
Q ss_pred ccchHhHHHHHHHhhhHHhHHHHHHHH
Q psy13024 46 NGLSAGLLRQATYTTTRLGTYNLLLNK 72 (75)
Q Consensus 46 ~G~~~~~~~~~~~~~~~~~~~e~~~~~ 72 (75)
|-....++..+|...+.+.+|+..++.
T Consensus 39 RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ 65 (81)
T 3tgu_G 39 RRFSSQVFKVAPPFLGAYLLYSWGTQE 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHhhHHHHHHHHHHHHHHHH
Confidence 334455677888888888888887764
No 7
>2l5r_A Antimicrobial peptide alyteserin-1C; alpha helix, antimicrobial protein; NMR {Alytes obstetricans}
Probab=43.34 E-value=15 Score=13.40 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=9.5
Q ss_pred HHHHHhhcHhHhhccchHh
Q psy13024 33 TTILRKEGVFAMYNGLSAG 51 (75)
Q Consensus 33 ~~~~~~~G~~gly~G~~~~ 51 (75)
+++++ .|+..+.+|+.+.
T Consensus 3 keifk-aglgslvkgiaah 20 (26)
T 2l5r_A 3 KEIFK-AGLGSLVKGIAAH 20 (26)
T ss_dssp HHHHH-HHHHHHHHHHHHH
T ss_pred HHHHH-HhHHHHHHHHHHH
Confidence 44444 3556666666543
No 8
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=37.06 E-value=38 Score=16.31 Aligned_cols=33 Identities=18% Similarity=0.097 Sum_probs=23.2
Q ss_pred cHhHhhccchHhHHHHHHHhhhHHhHHHHHHHH
Q psy13024 40 GVFAMYNGLSAGLLRQATYTTTRLGTYNLLLNK 72 (75)
Q Consensus 40 G~~gly~G~~~~~~~~~~~~~~~~~~~e~~~~~ 72 (75)
|+...+|-+...++..+|...+.+.+|+..++.
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~ 65 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQE 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHH
Confidence 444445556666777788888888888887764
No 9
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=26.48 E-value=24 Score=14.68 Aligned_cols=12 Identities=42% Similarity=0.645 Sum_probs=8.6
Q ss_pred cHHHHHHHHHhc
Q psy13024 9 PLDLIKNRMQLD 20 (75)
Q Consensus 9 P~d~~k~~~q~~ 20 (75)
-+|.||-+||+-
T Consensus 4 ~MdAIKKKMq~l 15 (40)
T 2z5i_I 4 SMDAIKKKMQML 15 (40)
T ss_dssp -CHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 468888888863
No 10
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=24.17 E-value=57 Score=16.18 Aligned_cols=29 Identities=3% Similarity=-0.167 Sum_probs=19.1
Q ss_pred hhccchHhHHHHHHHhhhHHhHHHHHHHH
Q psy13024 44 MYNGLSAGLLRQATYTTTRLGTYNLLLNK 72 (75)
Q Consensus 44 ly~G~~~~~~~~~~~~~~~~~~~e~~~~~ 72 (75)
.+|-+...++..+|...+...+|+..++.
T Consensus 47 ~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~ 75 (93)
T 3cx5_H 47 SFRRFKSQFLYVLIPAGIYWYWWKNGNEY 75 (93)
T ss_dssp CSHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcceEEechHhHHHHHHHHHHHH
Confidence 33334445566778878888888877664
No 11
>1qey_A MNT-C, protein (regulatory protein MNT); oligomerization, transcriptional control, P22 MNT repressor, gene regulation; NMR {Enterobacteria phage P22} SCOP: h.2.1.1
Probab=22.21 E-value=49 Score=12.86 Aligned_cols=11 Identities=9% Similarity=0.374 Sum_probs=6.3
Q ss_pred HHHHHHHHHHh
Q psy13024 28 SIQAFTTILRK 38 (75)
Q Consensus 28 ~~~~~~~~~~~ 38 (75)
.++.++++|++
T Consensus 19 vfdtLk~~Y~k 29 (31)
T 1qey_A 19 VFDTLKDLYKK 29 (31)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 35566666654
No 12
>1yro_A Alpha-lactalbumin; Arg228Lys mutation, UDP-GAL complex, transferase activator/transferase complex; HET: GDU UDP MES PG4; 1.90A {Mus musculus} SCOP: d.2.1.2 PDB: 1nhe_A* 1nkh_A* 1nmm_A* 1nqi_A* 1nwg_A* 1o23_A* 1oqm_A* 1pzy_A* 1nf5_A* 2fyc_A* 2fyd_A*
Probab=20.41 E-value=67 Score=16.71 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhhcHhH
Q psy13024 28 SIQAFTTILRKEGVFA 43 (75)
Q Consensus 28 ~~~~~~~~~~~~G~~g 43 (75)
...|.++|++++|+..
T Consensus 88 ~i~CAk~I~~~~G~~a 103 (123)
T 1yro_A 88 DIACAKKILAIKGIDY 103 (123)
T ss_dssp HHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHhcCcch
Confidence 4788999999988765
No 13
>2fbd_A Lysozyme 1; digestive lysozime, hydrolase; HET: PEG; 1.90A {Musca domestica} PDB: 2h5z_A* 3cb7_A
Probab=20.01 E-value=74 Score=16.49 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhhcHhH
Q psy13024 28 SIQAFTTILRKEGVFA 43 (75)
Q Consensus 28 ~~~~~~~~~~~~G~~g 43 (75)
...|.++|++++|+..
T Consensus 89 ~i~CAk~I~~~~G~~a 104 (122)
T 2fbd_A 89 SVTCARKIKSQQGWTA 104 (122)
T ss_dssp HHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHhcCCcc
Confidence 4678999999988765
Done!