RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13024
         (75 letters)



>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein. 
          Length = 96

 Score = 67.3 bits (165), Expect = 9e-17
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 1  MAATVFVQPLDLIKNRMQLDKAK---EYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQAT 57
            A     PLD++K R+Q   A    +Y+  +  F  I ++EG+  +Y GL   LLR A 
Sbjct: 17 AIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLYKGLLPNLLRVAP 76

Query: 58 YTTTRLGTYNLLLNKF 73
                GTY  L    
Sbjct: 77 AAAIYFGTYETLKKLL 92


>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
           Provisional.
          Length = 300

 Score = 31.3 bits (71), Expect = 0.026
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 2   AATVFVQPLDLIKNRMQL---DKAKE---YRSSIQAFTTILRKEGVFAMYNGLSAGLLRQ 55
            A +   P D ++ RM +    KAK    Y  ++  +  IL+ EG+   + G  A +LR 
Sbjct: 223 LAGLISYPFDTVRRRMMMMSGRKAKSEIQYTGTLDCWKKILKNEGLGGFFKGAWANVLRG 282

Query: 56  A 56
           A
Sbjct: 283 A 283



 Score = 27.8 bits (62), Expect = 0.43
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 2   AATVFVQPLDLIKNRMQLD----KAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQAT 57
           ++ + V PLD  + R+  D      +E+         I ++ G  ++Y G    +     
Sbjct: 126 SSLLIVYPLDFARTRLASDIGKGGDREFTGLFDCLMKISKQTGFLSLYQGFGVSVQGIIV 185

Query: 58  YTTTRLGTYN 67
           Y     G Y+
Sbjct: 186 YRGAYFGLYD 195


>gnl|CDD|188641 cd00954, NAL, N-Acetylneuraminic acid aldolase, also called
           N-acetylneuraminate lyase (NAL).  N-Acetylneuraminic
           acid aldolase, also called N-acetylneuraminate lyase
           (NAL), which catalyses the reversible aldol reaction of
           N-acetyl-D-mannosamine and pyruvate to give
           N-acetyl-D-neuraminic acid (D-sialic acid). It has a
           widespread application as biocatalyst for the synthesis
           of sialic acid and its derivatives. This enzyme has been
           shown to be quite specific for pyruvate as the donor,
           but flexible to a variety of D- and, to some extent,
           L-hexoses and pentoses as acceptor substrates. NAL is
           member of dihydrodipicolinate synthase family that
           comprises several pyruvate-dependent class I aldolases.
          Length = 288

 Score = 30.0 bits (68), Expect = 0.067
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 7/60 (11%)

Query: 2   AATVFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFAM------YNGLSAGLLRQ 55
               + +  +       +D A+E +  I    T+L K G++          GL AG  R 
Sbjct: 211 NGKRYRKIFEAFNAG-DIDTARELQHVINDVITVLIKNGLYPTLKAILRLMGLDAGPCRL 269


>gnl|CDD|143424 cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative
           aldehyde dehydrogenase AldA (AAD23400)-like.  Putative
           aldehyde dehydrogenase, AldA, from Streptomyces
           aureofaciens (locus AAD23400) and other similar
           sequences are present in this CD.
          Length = 446

 Score = 27.1 bits (61), Expect = 0.71
 Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 3/31 (9%)

Query: 1   MAATVFVQPLDLIKNRMQLDKAKEYRSSIQA 31
           +     + P   ++N+MQ DK KE     +A
Sbjct: 288 LDPGTTLGP---VQNKMQYDKVKELVEDAKA 315


>gnl|CDD|173956 cd08197, DOIS, 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes
           carbocycle formation from D-glucose-6-phosphate to
           2-deoxy-scyllo-inosose through a multistep reaction in
           the biosynthesis of aminoglycoside antibiotics.
           2-deoxy-scyllo-inosose synthase (DOIS) catalyzes
           carbocycle formation from D-glucose-6-phosphate to
           2-deoxy-scyllo-inosose through a multistep reaction in
           the biosynthesis of aminoglycoside antibiotics.
           2-Deoxystreptamine (DOS)-containing aminoglycoside
           antibiotics includes neomycin, kanamycin, gentamicin,
           and ribostamycin. They are important antibacterial
           agents. DOIS is a homologue of the dehydroquinate
           synthase which catalyzes the cyclization of
           3-deoxy-D-arabino-heputulosonate-7-phosphate to
           dehydroquinate (DHQ) in the shikimate pathway.
          Length = 355

 Score = 26.9 bits (60), Expect = 0.82
 Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 2/42 (4%)

Query: 9   PLDLIKNRMQLDKAKEYRSSIQAFTT--ILRKEGVFAMYNGL 48
            LD I +R++ D  + Y           +L   G  A  NG 
Sbjct: 299 SLDDILHRVRYDNKRGYIPLDADQVPMVLLEGLGKPAGTNGT 340


>gnl|CDD|218287 pfam04841, Vps16_N, Vps16, N-terminal region.  This protein forms
          part of the Class C vacuolar protein sorting (Vps)
          complex. Vps16 is essential for vacuolar protein
          sorting, which is essential for viability in plants,
          but not yeast. The Class C Vps complex is required for
          SNARE-mediated membrane fusion at the lysosome-like
          yeast vacuole. It is thought to play essential roles in
          membrane docking and fusion at the Golgi-to-endosome
          and endosome-to-vacuole stages of transport. The role
          of VPS16 in this complex is not known.
          Length = 408

 Score = 25.2 bits (55), Expect = 4.0
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 2  AATVFVQPLDLIKNRMQLDKAKEYRSSIQAFTT 34
          AA  +  P+ + ++   L  A + R  IQ +  
Sbjct: 35 AAAPYGGPIAVTRSPFNLRPAYDQRPMIQIYNY 67


>gnl|CDD|237783 PRK14667, uvrC, excinuclease ABC subunit C; Provisional.
          Length = 567

 Score = 24.7 bits (54), Expect = 5.9
 Identities = 6/37 (16%), Positives = 16/37 (43%)

Query: 8   QPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFAM 44
             ++    ++  +KA   R  I A   +++ + V  +
Sbjct: 206 DKIEEYSQKLMFEKAAVIRDQILALENLIKGQEVSGL 242


>gnl|CDD|223543 COG0467, RAD55, RecA-superfamily ATPases implicated in signal
           transduction [Signal transduction mechanisms].
          Length = 260

 Score = 24.3 bits (53), Expect = 7.1
 Identities = 6/34 (17%), Positives = 14/34 (41%)

Query: 12  LIKNRMQLDKAKEYRSSIQAFTTILRKEGVFAMY 45
           + +  + L+     R  +      L+K GV ++ 
Sbjct: 133 ITELTLYLNDPALVRRILLLLKRFLKKLGVTSLL 166


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.134    0.363 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,633,266
Number of extensions: 270477
Number of successful extensions: 275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 12
Length of query: 75
Length of database: 10,937,602
Length adjustment: 45
Effective length of query: 30
Effective length of database: 8,941,672
Effective search space: 268250160
Effective search space used: 268250160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.4 bits)