RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13024
         (75 letters)



>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
          translocator, mitochondrial carrier transport protein,
          structural genomics; NMR {Mus musculus}
          Length = 303

 Score = 96.2 bits (240), Expect = 3e-26
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 10/84 (11%)

Query: 1  MAATVFVQPLDLIKNRMQL----------DKAKEYRSSIQAFTTILRKEGVFAMYNGLSA 50
            A +   PLD  K R+Q+            + +YR  +    T++R EG  ++YNGL A
Sbjct: 13 CIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVA 72

Query: 51 GLLRQATYTTTRLGTYNLLLNKFK 74
          GL RQ ++ + R+G Y+ +   + 
Sbjct: 73 GLQRQMSFASVRIGLYDSVKQFYT 96



 Score = 62.3 bits (152), Expect = 1e-13
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 2   AATVFVQPLDLIKNRMQLDKA----KEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQAT 57
            A    QP D++K R Q        + Y+S+++A+ TI R+EG+  ++ G S  + R A 
Sbjct: 117 LAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAI 176

Query: 58  YTTTRLGTYNL 68
                L TY+L
Sbjct: 177 VNCAELVTYDL 187



 Score = 61.5 bits (150), Expect = 2e-13
 Identities = 22/69 (31%), Positives = 30/69 (43%)

Query: 1   MAATVFVQPLDLIKNRMQLDKAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQATYTT 60
              TV   P+D++K R       +Y S+     T+LRKEG  A Y G     LR  ++  
Sbjct: 214 FCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNV 273

Query: 61  TRLGTYNLL 69
               TY  L
Sbjct: 274 VMFVTYEQL 282


>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
           transporter, nucleotide translocation, membrane protein,
           transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
           f.42.1.1 PDB: 2c3e_A*
          Length = 297

 Score = 57.3 bits (139), Expect = 1e-11
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 1   MAATVFVQPLDLIKNRMQLDKAK-----EYRSSIQAFTTILRKEGVFAMYNGLSAGLLRQ 55
             +  FV PLD  + R+  D  K     E+       T I + +G+  +Y G +  +   
Sbjct: 124 ATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGI 183

Query: 56  ATYTTTRLGTYNLL 69
             Y     G Y+  
Sbjct: 184 IIYRAAYFGVYDTA 197



 Score = 51.9 bits (125), Expect = 6e-10
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 1   MAATVFVQPLDLIKNRMQL-----DKAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLR 54
             A +   P D ++ RM +          Y  ++  +  I + EG  A + G  + +LR
Sbjct: 221 AVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR 279



 Score = 44.2 bits (105), Expect = 4e-07
 Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 8/79 (10%)

Query: 2  AATVFVQPLDLIKNRMQL-------DKAKEYRSSIQAFTTILRKEGVFAMYNGLSAGLLR 54
          + T  V P++ +K  +Q+          K+Y+  I     I +++G  + + G  A ++R
Sbjct: 21 SKTA-VAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIR 79

Query: 55 QATYTTTRLGTYNLLLNKF 73
                      +     F
Sbjct: 80 YFPTQALNFAFKDKYKQIF 98


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.9 bits (64), Expect = 0.13
 Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 25/58 (43%)

Query: 1    MAATVFVQP-LDLIKNRMQLDKAKEYRSSIQAFTTILRKEG------VFAMYNGLSAG 51
            ++AT F QP L L+          E      A    L+ +G       FA   G S G
Sbjct: 1726 LSATQFTQPALTLM----------EK-----AAFEDLKSKGLIPADATFA---GHSLG 1765


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.134    0.363 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,025,961
Number of extensions: 46602
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 7
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.9 bits)