RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13024
         (75 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
          heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 45.1 bits (105), Expect = 8e-08
 Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 7/80 (8%)

Query: 1  MAATVFVQPLDLIKNRMQLDKA-------KEYRSSIQAFTTILRKEGVFAMYNGLSAGLL 53
            +   V P++ +K  +Q+  A       K+Y+  I     I +++G  + + G  A ++
Sbjct: 18 AISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVI 77

Query: 54 RQATYTTTRLGTYNLLLNKF 73
          R            +     F
Sbjct: 78 RYFPTQALNFAFKDKYKQIF 97



 Score = 43.9 bits (102), Expect = 2e-07
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 1   MAATVFVQPLDLIKNRMQLDKAKE-----YRSSIQAFTTILRKEGVFAMYNGLSAGLLRQ 55
             A +   P D ++ RM +   ++     Y  ++  +  I + EG  A + G  + +LR 
Sbjct: 220 AVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR- 278

Query: 56  ATYTTTRLGTY 66
                  L  Y
Sbjct: 279 GMGGAFVLVLY 289


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.134    0.363 

Gapped
Lambda     K      H
   0.267   0.0399    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 238,610
Number of extensions: 8228
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 2
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.8 bits)