BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1303
(206 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 257 bits (657), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 116/205 (56%), Positives = 156/205 (76%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
GC T I++V+N LY G I KFG+ +QK+ ++ F +G +GCF +SEPG+GSDA
Sbjct: 84 GCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAAS 143
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
TTAR+E D WVLNGTK+WITN +EA A V A D+S+++KGI+AF++PM +PGL+LGKK
Sbjct: 144 TTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNKGISAFLVPMPTPGLTLGKK 203
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
EDKLGIRASST N+I ED +IP +++LG+ G GFK+ + +D RIG+ASQ +GIAQA+
Sbjct: 204 EDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQASL 263
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQL 205
DCA++YA R AFGAP+ KLQ +Q
Sbjct: 264 DCAVKYAENRHAFGAPLTKLQNIQF 288
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 254 bits (650), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 116/205 (56%), Positives = 151/205 (73%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
GC T I++V+N LY G I KFG+K+QK+ ++ F G +GCF +SEPG+GSDA
Sbjct: 80 GCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAAS 139
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
TTAR E D WVLNGTK+WITN +EA A V A D++ ++K I+AF++PM +PGL+LGKK
Sbjct: 140 TTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKSISAFLVPMPTPGLTLGKK 199
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
EDKLGIR SST N+I ED +IP DS+LG+ G GFK+ + +D RIG+ASQ +GIAQ A
Sbjct: 200 EDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTAL 259
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQL 205
DCA+ YA R+AFGAP+ KLQ +Q
Sbjct: 260 DCAVNYAENRMAFGAPLTKLQVIQF 284
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
pdb|1BUC|B Chain B, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
Length = 383
Score = 184 bits (466), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 135/203 (66%), Gaps = 1/203 (0%)
Query: 4 GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA 63
G + L+ L A I +FGT+ QKE +L V+GT +G FG++EP +G+DA+ T A
Sbjct: 85 GVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIA 144
Query: 64 RKESD-HWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKED 122
K D + LNG+K +ITNG A ++ A DKSK + GITAFI+ +PG + GKKED
Sbjct: 145 TKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKED 204
Query: 123 KLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDC 182
K+GI S T ++ +DVK+P +++LG+EG+GFK+ + +D RIG+A+Q +GIA+AA
Sbjct: 205 KMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAALAD 264
Query: 183 AMEYAGKRIAFGAPILKLQAVQL 205
A+EY+ +R+ FG P+ K Q++
Sbjct: 265 AVEYSKQRVQFGKPLCKFQSISF 287
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
Length = 404
Score = 174 bits (441), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 126/194 (64%), Gaps = 1/194 (0%)
Query: 11 VHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHW 70
+ N L LI K GT++QK TYLP VG F +SE G+GSD+ + T A KE D++
Sbjct: 113 IQNTLINTLIRKHGTEEQKATYLPQLTT-EKVGSFCLSEAGAGSDSFALKTRADKEGDYY 171
Query: 71 VLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASS 130
VLNG+K WI++ A F+ +A D + +KGIT+F++ D+PGL +GK E+KLG+RASS
Sbjct: 172 VLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASS 231
Query: 131 TCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKR 190
TC + E+VK+P ++LG+ G G+K + ++ RIG+A+Q +G+AQ FD + Y +R
Sbjct: 232 TCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKER 291
Query: 191 IAFGAPILKLQAVQ 204
I FG + Q +Q
Sbjct: 292 IQFGKRLFDFQGLQ 305
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 118/182 (64%)
Query: 24 GTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGY 83
GT++QKE +L + + F +SEPG+GSDAA + T A ++ DH+VLNGTK WI+NG
Sbjct: 101 GTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGG 160
Query: 84 EAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPL 143
EA+ V A + +HKG+ A ++ +PG K K+G RAS T ++ EDVK+P+
Sbjct: 161 EAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPV 220
Query: 144 DSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAV 203
++ LG+EGEGFK+ + ++ RI +A+ +G+A+ A D A +YA +R AFG PI QA+
Sbjct: 221 ENRLGEEGEGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAI 280
Query: 204 QL 205
Q
Sbjct: 281 QF 282
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 156 bits (394), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 125/199 (62%), Gaps = 5/199 (2%)
Query: 5 TSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTAR 64
+ I++V + L ++ +FG++ QK YL G +G F ++EP +GSDA ++ AR
Sbjct: 81 VAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEAR 140
Query: 65 KESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKL 124
+ +VLNG KSWIT+ A +V +A+ +K GI+AF++ +PGLS G+ E+K+
Sbjct: 141 RVKGGFVLNGVKSWITSAGHAHLYVVMARTEK-----GISAFLVEKGTPGLSFGRPEEKM 195
Query: 125 GIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAM 184
G+ A+ T V LE+V +P +++LG+EG G L G+D R+G+A+Q +GIA+ AF+ A
Sbjct: 196 GLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRVGVAAQAVGIARGAFEIAK 255
Query: 185 EYAGKRIAFGAPILKLQAV 203
YA +R FG + + QA+
Sbjct: 256 AYAEEREQFGKKLKEHQAI 274
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 154 bits (388), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 113/195 (57%), Gaps = 2/195 (1%)
Query: 12 HNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWV 71
H+ L + + G + QKE YLP + G +G +SEP +GSD +M A K+ +H++
Sbjct: 100 HSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYI 159
Query: 72 LNGTKSWITNGYEAKAFVCIAQADKSK--KHKGITAFIIPMDSPGLSLGKKEDKLGIRAS 129
LNG K WITNG +A + A+ D + +GITAFI+ PG S KK DKLG+R S
Sbjct: 160 LNGNKFWITNGPDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGS 219
Query: 130 STCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGK 189
+TC +I ED KIP ++LG E +G V ++G+D R+ +A +G+ QA D + Y
Sbjct: 220 NTCELIFEDCKIPAANILGHENKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHV 279
Query: 190 RIAFGAPILKLQAVQ 204
R AFG I Q +Q
Sbjct: 280 REAFGQKIGHFQLMQ 294
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 153 bits (387), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 119/206 (57%), Gaps = 6/206 (2%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDA--AN 58
G GG S H + + FGT++QK YLP G + + ++EPGSGSDA A
Sbjct: 102 GSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAK 161
Query: 59 MLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLG 118
T ++ H++LNG K WI+N A F A+ D TAF++ D+PGLS G
Sbjct: 162 TRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAKVDGEH----FTAFLVERDTPGLSFG 217
Query: 119 KKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQA 178
+E K+GI+ASST VILEDVK+P+++VLG+ G+G K+ ++ R + + +G A+
Sbjct: 218 PEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGRYKLGAGAVGGAKR 277
Query: 179 AFDCAMEYAGKRIAFGAPILKLQAVQ 204
A + + +YA +R+ FG PI + +Q
Sbjct: 278 ALELSAQYATQRVQFGRPIGRFGLIQ 303
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 125/207 (60%), Gaps = 4/207 (1%)
Query: 3 GGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTT 62
G + + HN L G I G++ QKE +LP G +G +G++EPGSGSDAA + T
Sbjct: 83 GALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTK 142
Query: 63 ARKESDHWVLNGTKSWITNGYEAKAFVCIAQADK----SKKHKGITAFIIPMDSPGLSLG 118
A K W LNGTK +IT G A +V +A+ D +KH+GI+AF GL +G
Sbjct: 143 AEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVG 202
Query: 119 KKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQA 178
+KE+KLG+ AS T +ILED+ +P +++LG+ G+GF L +D RIG+A+ +G+ QA
Sbjct: 203 RKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQA 262
Query: 179 AFDCAMEYAGKRIAFGAPILKLQAVQL 205
A D A+ YA R AFG PI + + V
Sbjct: 263 ALDYALAYAKGREAFGRPIAEFEGVSF 289
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 121/195 (62%), Gaps = 3/195 (1%)
Query: 9 LTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESD 68
++VH+ L+ FGT++QK+ +LP + G +G + +SEP +GSDAA + A
Sbjct: 98 VSVHSLSSHPLL-VFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDG 156
Query: 69 HWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRA 128
+V+NG+KSWIT+G +A + A+ + + G++ F++P D PGLS GK E+K+G+ A
Sbjct: 157 GYVINGSKSWITHGGKADFYTLFARTGEGSR--GVSCFLVPADQPGLSFGKPEEKMGLHA 214
Query: 129 SSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAG 188
T + ++ +I D +G+EG+G ++ + +D R+G+A+ G+AQAA D A+ YA
Sbjct: 215 VPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGRLGIAAVATGLAQAALDEAVAYAN 274
Query: 189 KRIAFGAPILKLQAV 203
+R AFG I+ Q +
Sbjct: 275 ERTAFGRKIIDHQGL 289
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 116/200 (58%), Gaps = 1/200 (0%)
Query: 6 STILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARK 65
S I V+ GLI + G+++ K+ LP+ G + + +SE +GSDAA+M T A
Sbjct: 98 SLIPAVNKLGTMGLILR-GSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVA 156
Query: 66 ESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLG 125
+ D W+LNG+K WITNG ++ + +A D K GI+AF++ D G ++G KE KLG
Sbjct: 157 DGDDWILNGSKCWITNGGKSTWYTVMAVTDPDKGANGISAFMVHKDDEGFTVGPKERKLG 216
Query: 126 IRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAME 185
I+ S T + E+ +IP D ++G+ G GFK L +D R + +Q +GIAQ A D A+
Sbjct: 217 IKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHTRPTIGAQAVGIAQGALDAAIA 276
Query: 186 YAGKRIAFGAPILKLQAVQL 205
Y +R FG P+ Q VQ
Sbjct: 277 YTKERKQFGRPVSDNQGVQF 296
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 144 bits (362), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 117/197 (59%), Gaps = 4/197 (2%)
Query: 9 LTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESD 68
+ V C Y I +G++ K+ Y+P +G FGI+EP +GSD M +TA + D
Sbjct: 92 MEVLGCAYT--ILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGD 149
Query: 69 HWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFII-PMDSPGLSLGKKEDKLGIR 127
HW+LNG+K+WI+N +A + A DK+ +G++AF+I P + PG+ E KLG
Sbjct: 150 HWLLNGSKTWISNAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKTSNLE-KLGSH 208
Query: 128 ASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYA 187
AS T + L++VK+P +++LGK G+G ++ ++ R+ A+ G+G+AQA D A++Y
Sbjct: 209 ASPTGELFLDNVKVPKENILGKPGDGARIVFGSLNHTRLSAAAGGVGLAQACLDAAIKYC 268
Query: 188 GKRIAFGAPILKLQAVQ 204
+R FG PI Q Q
Sbjct: 269 NERRQFGKPIGDFQMNQ 285
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 117/202 (57%), Gaps = 6/202 (2%)
Query: 4 GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDA-ANMLTT 62
G + ++V + L I +G+++QK +LP G VGCFG++EP GSD NM T
Sbjct: 88 GLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTR 147
Query: 63 ARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKED 122
AR+E D WVLNGTK WITNG A V A+ + + + F++P D+PG + +
Sbjct: 148 ARREGDTWVLNGTKMWITNGNLAHLAVIWAKDEGGE----VLGFLVPTDTPGFQAREVKR 203
Query: 123 KLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDC 182
K+ +RAS T ++LE+V++P +S+ + G K L+ + AR G+A +G +A ++
Sbjct: 204 KMSLRASVTSELVLEEVRVP-ESLRLPKALGLKAPLSCLTQARFGIAWGAMGALEAVYEE 262
Query: 183 AMEYAGKRIAFGAPILKLQAVQ 204
A+ +A R FG P+ K Q VQ
Sbjct: 263 AVAFAKSRSTFGEPLAKKQLVQ 284
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 114/197 (57%), Gaps = 2/197 (1%)
Query: 11 VHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHW 70
+HN + I +GT++QK+ +LP V G + ++EPG+GSD AN+ TTA K+ D++
Sbjct: 93 LHNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYY 152
Query: 71 VLNGTKSWITNGYEAKAFVCIAQADKSKK--HKGITAFIIPMDSPGLSLGKKEDKLGIRA 128
++NG K++ITNG A V + D K H+GI+ ++ D+PG + G+K +K+G+ A
Sbjct: 153 IVNGQKTFITNGIHADLIVVACKTDPQAKPPHRGISLLVVERDTPGFTRGRKLEKVGLHA 212
Query: 129 SSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAG 188
T + +D K+P ++LG+EG+GF + + R+ +A A+ F +Y
Sbjct: 213 QDTAELFFQDAKVPAYNLLGEEGKGFYYLMEKLQQERLVVAIAAQTAAEVMFSLTKQYVK 272
Query: 189 KRIAFGAPILKLQAVQL 205
+R AFG + + Q VQ
Sbjct: 273 QRTAFGKRVSEFQTVQF 289
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND
Length = 393
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 122/205 (59%), Gaps = 2/205 (0%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
GC T+ +++HN + A +I+ FG ++Q+ + P + ++EPGSGSDAA++L
Sbjct: 93 GCTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLL 151
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
T+A+K+ DH++LNG+K++I+ E+ +V + + KGI+ ++ +PGLS GKK
Sbjct: 152 TSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTGGPGP-KGISCIVVEKGTPGLSFGKK 210
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
E K+G + T VI ED +P+ + +G EG+GF + + G++ RI +AS +G A A+
Sbjct: 211 EKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGGRINIASCSLGAAHASV 270
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQL 205
++ R FG P+ Q +Q
Sbjct: 271 ILTRDHLNVRKQFGEPLASNQYLQF 295
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 121/208 (58%), Gaps = 4/208 (1%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
GC G T + N L I G +QK+ YL + + + ++EPG+GSD A +
Sbjct: 90 GCTGVQTAIE-GNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIK 148
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQAD---KSKKHKGITAFIIPMDSPGLSL 117
T A K+ D +++NG K WITNG +A + +A++D K+ +K T FI+ D+PG+ +
Sbjct: 149 TKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQI 208
Query: 118 GKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQ 177
G+KE +G R S T ++ EDVK+P ++VL +G GFKV + D R +A+ +G+AQ
Sbjct: 209 GRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGLAQ 268
Query: 178 AAFDCAMEYAGKRIAFGAPILKLQAVQL 205
A D A +YA +R FG +++ QA+
Sbjct: 269 RALDEATKYALERKTFGKLLVEHQAISF 296
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 121/208 (58%), Gaps = 4/208 (1%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
GC G T + N L I G +QK+ YL + + + ++EPG+GSD A +
Sbjct: 90 GCTGVQTAIE-GNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIK 148
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQAD---KSKKHKGITAFIIPMDSPGLSL 117
T A K+ D +++NG K WITNG +A + +A++D K+ +K T FI+ D+PG+ +
Sbjct: 149 TKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQI 208
Query: 118 GKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQ 177
G+KE +G R S T ++ EDVK+P ++VL +G GFKV + D R +A+ +G+AQ
Sbjct: 209 GRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKERPVVAAGAVGLAQ 268
Query: 178 AAFDCAMEYAGKRIAFGAPILKLQAVQL 205
A D A +YA +R FG +++ QA+
Sbjct: 269 RALDEATKYALERKTFGKLLVEHQAISF 296
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 121/208 (58%), Gaps = 4/208 (1%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
GC G T + N L I G +QK+ YL + + + ++EPG+GSD A +
Sbjct: 115 GCTGVQTAIE-GNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIK 173
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQAD---KSKKHKGITAFIIPMDSPGLSL 117
T A K+ D +++NG K WITNG +A + +A++D K+ +K T FI+ D+PG+ +
Sbjct: 174 TKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQI 233
Query: 118 GKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQ 177
G+KE +G R S T ++ EDVK+P ++VL +G GFKV + D R +A+ +G+AQ
Sbjct: 234 GRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGLAQ 293
Query: 178 AAFDCAMEYAGKRIAFGAPILKLQAVQL 205
A D A +YA +R FG +++ QA+
Sbjct: 294 RALDEATKYALERKTFGKLLVEHQAISF 321
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 118/208 (56%), Gaps = 4/208 (1%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
GC G T + + LI G +Q++ YL + + + ++EPG+GSD A +
Sbjct: 90 GCTGVQTAIEANTLGQVPLIIG-GNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIK 148
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQAD---KSKKHKGITAFIIPMDSPGLSL 117
T A K+ D +++NG K WITNG +A + +A++D K+ K T FI+ D+PG+ +
Sbjct: 149 TKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQI 208
Query: 118 GKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQ 177
G+KE +G R S T ++ EDV++P ++VL EG GFK+ + D R +A+ +G+AQ
Sbjct: 209 GRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQ 268
Query: 178 AAFDCAMEYAGKRIAFGAPILKLQAVQL 205
A D A +YA +R FG + + Q +
Sbjct: 269 RALDEATKYALERKTFGKLLAEHQGISF 296
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 118/208 (56%), Gaps = 4/208 (1%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
GC G T + + LI G +Q++ YL + + + ++EPG+GSD A +
Sbjct: 80 GCTGVQTAIEANTLGQVPLIIG-GNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIK 138
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQAD---KSKKHKGITAFIIPMDSPGLSL 117
T A K+ D +++NG K WITNG +A + +A++D K+ K T FI+ D+PG+ +
Sbjct: 139 TKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQI 198
Query: 118 GKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQ 177
G+KE +G R S T ++ EDV++P ++VL EG GFK+ + D R +A+ +G+AQ
Sbjct: 199 GRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQ 258
Query: 178 AAFDCAMEYAGKRIAFGAPILKLQAVQL 205
A D A +YA +R FG + + Q +
Sbjct: 259 RALDEATKYALERKTFGKLLAEHQGISF 286
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 109/204 (53%), Gaps = 6/204 (2%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
G G + ++V L I ++G+++QK +LP G +GCFG++EP GS+ A M
Sbjct: 99 GDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMR 158
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
T AR++ W+LNGTK WITNG A AQ D GI F++P D+PG + +
Sbjct: 159 TRARRDGSDWILNGTKMWITNGNLADVATVWAQTD-----DGIRGFLVPTDTPGFTANEI 213
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
KL +RAS T ++L++V++P + L EG L+ ++ AR G+ +G A+ +
Sbjct: 214 HRKLSLRASVTSELVLDNVRLPASAQL-PLAEGLSAPLSCLNEARFGIVFGALGAARDSL 272
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
+ + Y R F P+ Q Q
Sbjct: 273 ETTIAYTQSREVFDKPLSNYQLTQ 296
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 107/204 (52%), Gaps = 6/204 (2%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
G G ++++V L I+ FG+ +QK+ +LP G +GCFG++EP GSD A M
Sbjct: 104 GDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMR 163
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
T A + D W+L GTK WITNG A V A+ D +GI F++P D+PG +
Sbjct: 164 TRATRSGDDWILTGTKMWITNGSVADVAVVWARTD-----EGIRGFVVPTDTPGFTANTI 218
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
+ K+ +RAS T ++L+ V++P DS L ++ AR G+ +G A+
Sbjct: 219 KSKMSLRASVTSELVLDGVRLP-DSARLPGATSLGAPLRCLNEARFGIVFGALGAARDCL 277
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
+ A+ YA R F PI Q Q
Sbjct: 278 ETALAYACSREQFDRPIGGFQLTQ 301
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 127 bits (319), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 102/184 (55%), Gaps = 6/184 (3%)
Query: 23 FGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTAR--KESDHWVLNGTKSWIT 80
FG ++QK+ YLP G + + ++EPGSGSDA TTAR E H+VLNG K WIT
Sbjct: 129 FGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWIT 188
Query: 81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVK 140
N A F+ A+ D +AFI+ D G+S +E K GI+ SST +ILED
Sbjct: 189 NSAFADVFIVYAKIDGEH----FSAFIVEKDYAGVSTSPEEKKXGIKCSSTRTLILEDAL 244
Query: 141 IPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKL 200
+P +++LG+ G+G + ++ R + +G A+ A + + +YA +R F PI +
Sbjct: 245 VPKENLLGEIGKGHIIAFNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARF 304
Query: 201 QAVQ 204
+Q
Sbjct: 305 PLIQ 308
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 123 bits (309), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 109/208 (52%), Gaps = 7/208 (3%)
Query: 4 GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA 63
G L H + I FGTK QKE YLP G V F ++EP SGSDAA++ T+A
Sbjct: 105 GVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSA 164
Query: 64 RKES--DHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKG-----ITAFIIPMDSPGLS 116
++ LNG+K WI+NG A F A+ + G ITAF++ G++
Sbjct: 165 VPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGIT 224
Query: 117 LGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIA 176
G E K+GI+AS+T V + V++P ++VLG+ G GFKV + ++ R GMA+ G
Sbjct: 225 HGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTM 284
Query: 177 QAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
+ A+++A R FG I +Q
Sbjct: 285 RGIIAKAVDHATNRTQFGEKIHNFGLIQ 312
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 109/208 (52%), Gaps = 7/208 (3%)
Query: 4 GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA 63
G L H + I FGTK QKE YLP G V F ++EP SGSDAA++ T+A
Sbjct: 125 GVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSA 184
Query: 64 RKES--DHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKG-----ITAFIIPMDSPGLS 116
++ LNG+K WI+NG A F A+ + G ITAF++ G++
Sbjct: 185 VPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGIT 244
Query: 117 LGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIA 176
G E K+GI+AS+T V + V++P ++VLG+ G GFKV + ++ R GMA+ G
Sbjct: 245 HGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTM 304
Query: 177 QAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
+ A+++A R FG I +Q
Sbjct: 305 RGIIAKAVDHATNRTQFGEKIHNFGLIQ 332
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 112/201 (55%), Gaps = 2/201 (0%)
Query: 4 GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA 63
G ++++V + L I +FG+ QKE YLP G +GCFG++EP GSD +M+T A
Sbjct: 99 GYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRA 158
Query: 64 RKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDK 123
RK + L+G+K WITN A FV A+ D+ + + I FI+ GLS K
Sbjct: 159 RKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDE-IRGFILEKGCKGLSAPAIHGK 217
Query: 124 LGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCA 183
+G+RAS T ++L++ +P +++L +G + T ++ AR G+A +G A++ + A
Sbjct: 218 VGLRASITGEIVLDEAFVPEENIL-PHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIA 276
Query: 184 MEYAGKRIAFGAPILKLQAVQ 204
+Y R FG P+ Q +Q
Sbjct: 277 RQYVLDRKQFGRPLAANQLIQ 297
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 112/201 (55%), Gaps = 2/201 (0%)
Query: 4 GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA 63
G ++++V + L I +FG+ QKE YLP G +GCFG++EP GSD +M+T A
Sbjct: 96 GYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRA 155
Query: 64 RKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDK 123
RK + L+G+K WITN A FV A+ D+ + + I FI+ GLS K
Sbjct: 156 RKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDE-IRGFILEKGCKGLSAPAIHGK 214
Query: 124 LGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCA 183
+G+RAS T ++L++ +P +++L +G + T ++ AR G+A +G A++ + A
Sbjct: 215 VGLRASITGEIVLDEAFVPEENIL-PHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIA 273
Query: 184 MEYAGKRIAFGAPILKLQAVQ 204
+Y R FG P+ Q +Q
Sbjct: 274 RQYVLDRKQFGRPLAANQLIQ 294
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 112/201 (55%), Gaps = 2/201 (0%)
Query: 4 GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA 63
G ++++V + L I +FG+ QKE YLP G +GCFG++EP GSD +M+T A
Sbjct: 95 GYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRA 154
Query: 64 RKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDK 123
RK + L+G+K WITN A FV A+ D+ + + I FI+ GLS K
Sbjct: 155 RKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDE-IRGFILEKGCKGLSAPAIHGK 213
Query: 124 LGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCA 183
+G+RAS T ++L++ +P +++L +G + T ++ AR G+A +G A++ + A
Sbjct: 214 VGLRASITGEIVLDEAFVPEENIL-PHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIA 272
Query: 184 MEYAGKRIAFGAPILKLQAVQ 204
+Y R FG P+ Q +Q
Sbjct: 273 RQYVLDRKQFGRPLAANQLIQ 293
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 99/181 (54%), Gaps = 1/181 (0%)
Query: 24 GTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGY 83
G+ E Y+ + G +G G++EPG+GSD AN+ T A +E D +V+NG K++IT+G
Sbjct: 127 GSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGV 186
Query: 84 EAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPL 143
A FV A + G++ +I +SPG + ++ DK+G R S T + DV++P
Sbjct: 187 RAD-FVTTAVRTGGPGYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPA 245
Query: 144 DSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAV 203
D+++G E GF + R+G+A Q A A D A +A +R FG P+ Q +
Sbjct: 246 DNLVGAENSGFLQIMQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQII 305
Query: 204 Q 204
+
Sbjct: 306 R 306
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3OIB|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3P4T|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
pdb|3P4T|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
Length = 403
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 98/181 (54%), Gaps = 1/181 (0%)
Query: 24 GTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGY 83
G ++ +TY+ + G +G I+EPG GSD ++ T A + DH+V+NG K++IT+G
Sbjct: 124 GDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGV 183
Query: 84 EAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPL 143
A +V A G++ ++ +PG + +K DK+G R+S T + DV++P+
Sbjct: 184 RAD-YVVTAARTGGPGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPV 242
Query: 144 DSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAV 203
+++G E GF R+G+A+Q AQ D +E+ R FG P++ QAV
Sbjct: 243 ANLVGSENTGFAQIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAV 302
Query: 204 Q 204
Q
Sbjct: 303 Q 303
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 113 bits (283), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 113/204 (55%), Gaps = 9/204 (4%)
Query: 4 GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA 63
G + ++V + L I +G+++Q++ YLP G +GCFG++EP SGSD ++M T A
Sbjct: 90 GYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRA 149
Query: 64 RKESDH--WVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKE 121
S + + LNGTK+WITN A FV A+ + I F++ GLS + +
Sbjct: 150 HYNSSNKSYTLNGTKTWITNSPMADLFVVWARCEDG----CIRGFLLEKGMRGLSAPRIQ 205
Query: 122 DKLGIRASSTCNVILEDVKIPLDSVL-GKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
K +RAS+T +I++ V++P ++VL G G G ++ AR G+A +G ++
Sbjct: 206 GKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGC--LNNARYGIAWGVLGASEFCL 263
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
A +YA R+ FG P+ + Q +Q
Sbjct: 264 HTARQYALDRMQFGVPLARNQLIQ 287
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 113 bits (283), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 113/204 (55%), Gaps = 9/204 (4%)
Query: 4 GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA 63
G + ++V + L I +G+++Q++ YLP G +GCFG++EP SGSD ++M T A
Sbjct: 92 GYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRA 151
Query: 64 RKESDH--WVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKE 121
S + + LNGTK+WITN A FV A+ + I F++ GLS + +
Sbjct: 152 HYNSSNKSYTLNGTKTWITNSPMADLFVVWARCEDG----CIRGFLLEKGMRGLSAPRIQ 207
Query: 122 DKLGIRASSTCNVILEDVKIPLDSVL-GKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
K +RAS+T +I++ V++P ++VL G G G ++ AR G+A +G ++
Sbjct: 208 GKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGC--LNNARYGIAWGVLGASEFCL 265
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
A +YA R+ FG P+ + Q +Q
Sbjct: 266 HTARQYALDRMQFGVPLARNQLIQ 289
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 113 bits (283), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 113/204 (55%), Gaps = 9/204 (4%)
Query: 4 GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA 63
G + ++V + L I +G+++Q++ YLP G +GCFG++EP SGSD ++M T A
Sbjct: 92 GYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRA 151
Query: 64 RKESDH--WVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKE 121
S + + LNGTK+WITN A FV A+ + I F++ GLS + +
Sbjct: 152 HYNSSNKSYTLNGTKTWITNSPMADLFVVWARCEDG----CIRGFLLEKGMRGLSAPRIQ 207
Query: 122 DKLGIRASSTCNVILEDVKIPLDSVL-GKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
K +RAS+T +I++ V++P ++VL G G G ++ AR G+A +G ++
Sbjct: 208 GKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGC--LNNARYGIAWGVLGASEFCL 265
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
A +YA R+ FG P+ + Q +Q
Sbjct: 266 HTARQYALDRMQFGVPLARNQLIQ 289
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 4/199 (2%)
Query: 6 STILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARK 65
ST + VH+ L I G++ QKE YLPS V C+ ++EP +GSDA+ + TTA K
Sbjct: 133 STFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATK 192
Query: 66 ESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLG 125
W +NG K WI N A + A+ + + I FI+ D+PGL K +K+G
Sbjct: 193 VEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQ---INGFIVKKDAPGLKATKIPNKIG 249
Query: 126 IRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAME 185
+R +++L++V +P + L F+ + +R+ +A Q IGI+ +D
Sbjct: 250 LRMVQNGDILLQNVFVPDEDRLPGVN-SFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHR 308
Query: 186 YAGKRIAFGAPILKLQAVQ 204
Y +R FGAP+ Q Q
Sbjct: 309 YLKERKQFGAPLAAFQLNQ 327
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 4/199 (2%)
Query: 6 STILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARK 65
ST + VH+ L I G++ QKE YLPS V C+ ++EP +GSDA+ + TTA K
Sbjct: 133 STFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATK 192
Query: 66 ESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLG 125
W +NG K WI N A + A+ + + I FI+ D+PGL K +K+G
Sbjct: 193 VEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQ---INGFIVKKDAPGLKATKIPNKIG 249
Query: 126 IRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAME 185
+R +++L++V +P + L F+ + +R+ +A Q IGI+ +D
Sbjct: 250 LRMVQNGDILLQNVFVPDEDRLPGVN-SFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHR 308
Query: 186 YAGKRIAFGAPILKLQAVQ 204
Y +R FGAP+ Q Q
Sbjct: 309 YLKERKQFGAPLAAFQLNQ 327
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 102/188 (54%), Gaps = 6/188 (3%)
Query: 19 LINKFGTKKQKETYLPSFVDGTNVGCFGISEPG-SGSDAANMLTTARKESDHWVLNGTKS 77
+++++G+++QKE +L ++G F ++EP + SDA NM TA E D V+NG K
Sbjct: 120 VLHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAATAVVEGDEVVINGRKW 179
Query: 78 WITN-GY-EAKAFVCIAQAD-KSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCN- 133
W T G+ + K + + D + ++ + ++PMD+PG+++ + +G +
Sbjct: 180 WSTGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHG 239
Query: 134 -VILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIA 192
V ++V++P D+ + G+GF++ + R+ A + IG+A+ A + A R A
Sbjct: 240 VVSFDNVRLPADAFIAGPGKGFEIAQGRLGPGRVHHAMRLIGLAEVALEHACRRGLDRTA 299
Query: 193 FGAPILKL 200
FG P++ L
Sbjct: 300 FGKPLVNL 307
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
Length = 428
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 92/183 (50%), Gaps = 8/183 (4%)
Query: 19 LINKFGTKKQKETYLPSFVDGTNVGCFGISEPG-SGSDAANMLTTARKESDHWVLNGTKS 77
+++ +G+++QK+ +L + G CF ++EP + SDA N+ + +++ D +V+NG K
Sbjct: 126 VLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGKKW 185
Query: 78 WITNGYEAKAFVCIA----QADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRAS---S 130
W + K + I Q +HK + ++PM++PG+ + + G +
Sbjct: 186 WSSGAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGG 245
Query: 131 TCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKR 190
+ V++P +++ EG GF++ + RI + +G+A+ A E A +R
Sbjct: 246 HFEIHFNQVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAERALQIMCERATQR 305
Query: 191 IAF 193
IAF
Sbjct: 306 IAF 308
>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp
Length = 439
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 16/195 (8%)
Query: 6 STILTVHNCLYAGLIN----KFGTKKQK---ETYLPSFVDGTNVGCFGISEPGSGSDAAN 58
ST L +H L GL + G ++ + E L V G V C GI D
Sbjct: 97 STALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIK------DHHT 150
Query: 59 MLTTARKE-SDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSL 117
+TT R + + W+L+G K+ ++ FV A+ D + + + ++ D+PG ++
Sbjct: 151 AVTTLRPDGAGGWLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTV 210
Query: 118 GKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFK--VGLTGIDCARIGMASQGIGI 175
D LG+RAS T +++ +D IP D VL ++ G + L G + + + +G+
Sbjct: 211 LDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGARNDAVLAGQTVSSVSVLGVYVGV 270
Query: 176 AQAAFDCAMEYAGKR 190
AQAA+D A+ +R
Sbjct: 271 AQAAYDTAVAALERR 285
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of
Fk520 Polyketide Immunosuppresant
Length = 366
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 90/204 (44%), Gaps = 9/204 (4%)
Query: 2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLT 61
C +++T + A + + G Q+ T+L G + G SE +GSD + M T
Sbjct: 68 CSSLRSVMTSQG-MAAWTVQRLGDAGQRATFLKELTSG-KLAAVGFSERQAGSDLSAMRT 125
Query: 62 TARKESDHWVLNGTKSWITNGYEAKAFVCIA-QADKSKKHKGITAFIIPMDSPGLSLGKK 120
R + D V++G K W T A V Q D S ++P D+PG+ + +
Sbjct: 126 RVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQEDGSG-----AVVVVPADTPGVRVERV 180
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG-IDCARIGMASQGIGIAQAA 179
G RA+ ++ L+ V++P +VL G + + + R +A +GI +A
Sbjct: 181 PKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGILRAC 240
Query: 180 FDCAMEYAGKRIAFGAPILKLQAV 203
A+ +A R FG P+ Q V
Sbjct: 241 RTAAVAHARTREQFGRPLGDHQLV 264
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|B Chain B, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|C Chain C, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|D Chain D, Podospora Anserina Nitroalkane Oxidase
Length = 438
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 25/200 (12%)
Query: 28 QKETYLPSFV--DGTNVGCFGISEPGSGSDAAN-----MLTTARKESDHWVLNGTKSWIT 80
Q +L F+ +G+ + SEPG ++A TTAR E D WV+NG K W T
Sbjct: 113 QHAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEGDEWVINGEKMWAT 172
Query: 81 N--GYEAKA--FVCIAQAD--------KSKKHKGITAFIIPMD-----SPGLSLGKKEDK 123
N G++ K C+ D + ++K + + D + +
Sbjct: 173 NCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVAT 232
Query: 124 LGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCA 183
G + S +V +V++P +VL G+G KV D + + + + G+G+ +AAFD A
Sbjct: 233 PGHTSVSGPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAFDAA 292
Query: 184 MEYAGKRIAFGA-PILKLQA 202
+++A + GA P+L+ QA
Sbjct: 293 LKFAKEDNRGGAVPLLERQA 312
>pdb|3DJL|A Chain A, Crystal Structure Of Alkylation Response Protein E. Coli
Aidb
pdb|3U33|A Chain A, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|B Chain B, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|C Chain C, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|D Chain D, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|E Chain E, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|F Chain F, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|G Chain G, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|H Chain H, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|I Chain I, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|J Chain J, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|K Chain K, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|L Chain L, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
Length = 541
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 25/166 (15%)
Query: 45 FGISEPGSGSDAANMLTTA-RKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGI 103
G++E GSD + T A R E + L G K W + ++ A + +AQ G+
Sbjct: 182 MGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHK-WFFSVPQSDAHLVLAQTAG-----GL 235
Query: 104 TAFIIPMDSP-----GLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKV-- 156
+ F +P P + L + +DKLG R++++C V +D + +LG EGEG ++
Sbjct: 236 SCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDA---IGWLLGLEGEGIRLIL 292
Query: 157 ---GLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILK 199
G+T DCA + S + + AF A+ +A +R FG P+++
Sbjct: 293 KMGGMTRFDCA---LGSH--AMMRRAFSLAIYHAHQRHVFGNPLIQ 333
>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|B Chain B, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|C Chain C, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|D Chain D, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
Length = 395
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 81/195 (41%), Gaps = 16/195 (8%)
Query: 6 STILTVHNCLYAGLINKF----GT---KKQKETYLPSFVDGTNVGCFGISEPGSGSDAAN 58
ST L H L GL + GT + E L + +G C G+ DA
Sbjct: 86 STALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVC------GALKDAPG 139
Query: 59 MLTTARKE-SDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSL 117
++T + + W+L+G K ++ A F AQ + ++ D+PGL++
Sbjct: 140 VVTELHSDGAGGWLLSGRKVLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLTV 199
Query: 118 GKKEDKLGIRASSTCNVILEDVKIPLDSVL--GKEGEGFKVGLTGIDCARIGMASQGIGI 175
D LG+RAS T V+ + + D +L G G L G + I M GI
Sbjct: 200 LDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGARRDAVLAGQTVSSITMLGIYAGI 259
Query: 176 AQAAFDCAMEYAGKR 190
AQAA D A+ + R
Sbjct: 260 AQAARDIAVGFCAGR 274
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 11 VHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTAR--KESD 68
+H ++ I GT KQ+E +LP +GC+ +E G GS+ + TTA ++D
Sbjct: 120 LHWGMFIPAIKGQGTDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTD 179
Query: 69 HWV-----LNGTKSWITN-GYEAKAFVCIAQADKSKKHKGITAFIIPMDS-------PGL 115
+V L +K W G + V A+ K G+ FI+ + S PG+
Sbjct: 180 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGKDYGVNGFIVQLRSLEDHKPLPGV 239
Query: 116 SLGKKEDKLGIRASSTCN---VILEDVKIPLDSVLGKEGEGFKVG 157
++G K G A ++ + + + V+IP D +L + + K G
Sbjct: 240 TVGDIGMKFGNGAYNSMDNGVLSFDHVRIPRDQMLMRVSQVTKEG 284
>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|B Chain B, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|C Chain C, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|D Chain D, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|E Chain E, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|F Chain F, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|G Chain G, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|H Chain H, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
Length = 437
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 82/203 (40%), Gaps = 10/203 (4%)
Query: 12 HNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWV 71
++ A +I G+++Q+E +L + + N S + ++ E +V
Sbjct: 116 YHLTNAPMIELIGSQEQEE-HLYTQIAQNNWWTGNASSENNSHVLDWKVSATPTEDGGYV 174
Query: 72 LNGTKSWITNGYEAKA-FVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASS 130
LNGTK + + + FV D S + I A IP G++ +G+R +
Sbjct: 175 LNGTKHFCSGAKGSDLLFVFGVVQDDSPQQGAIIAAAIPTSRAGVTPNDDWAAIGMRQTD 234
Query: 131 TCNVILEDVKIPLDSVLGKEGEGFKVGLTGID-------CARIGMASQGIGIAQAAFDCA 183
+ + +VK+ D VLG F + + A++ A+ +GIA A D A
Sbjct: 235 SGSTDFHNVKVEPDEVLGAP-NAFVLAFIQSERGSLFAPIAQLIFANVYLGIAHGALDAA 293
Query: 184 MEYAGKRIAFGAPILKLQAVQLP 206
EY + P QA + P
Sbjct: 294 REYTRTQARPWTPAGIQQATEDP 316
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 18/157 (11%)
Query: 11 VHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTAR--KESD 68
+H ++ I GT++Q++ +L +GC+ +E G GS+ + TTA ++D
Sbjct: 101 LHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTD 160
Query: 69 HWVLN-----GTKSWITN-GYEAKAFVCIAQADKSKKHKGITAFIIPMDS-------PGL 115
+V++ +K W G + V A+ + K GI FI+ + S P +
Sbjct: 161 EFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNI 220
Query: 116 SLGKKEDKLGIRASSTCN---VILEDVKIPLDSVLGK 149
++G K+G A ++ + ++ + V+IP D +L +
Sbjct: 221 TVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMR 257
>pdb|3D9D|A Chain A, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|B Chain B, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|C Chain C, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|D Chain D, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9E|A Chain A, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|B Chain B, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|C Chain C, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|D Chain D, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3FCJ|A Chain A, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|B Chain B, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|C Chain C, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|D Chain D, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
Length = 438
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 36/191 (18%)
Query: 29 KETYLPSFV--DGTNVGCFGISEPGSGSDAAN-----MLTTARKESDHWVLNGTKSWITN 81
+E +L F+ +G + SEP ++ + TTARK + WV++G K W +N
Sbjct: 112 QEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSN 171
Query: 82 --GYEAKA-----FVCIAQADKSKKHK-------GITAFIIPMDSPGLSLGKKE------ 121
G++ K VC D SK I ++ ++ ++ KK+
Sbjct: 172 SGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRET--IANNKKDAYQILG 229
Query: 122 --DKLGIRASSTCNVILEDVKIPLDSVL---GKEGEGFKVGLTGIDCARIGMASQGIGIA 176
+ G +S + + +P +++L G + +G + A +G + IG A
Sbjct: 230 EPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVG--AMAIGTA 287
Query: 177 QAAFDCAMEYA 187
+AAF+ A+ +A
Sbjct: 288 RAAFEEALVFA 298
>pdb|2REH|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 36/191 (18%)
Query: 29 KETYLPSFV--DGTNVGCFGISEPGSGSDAAN-----MLTTARKESDHWVLNGTKSWITN 81
+E +L F+ +G + SEP ++ + TTARK + WV++G K W +N
Sbjct: 113 QEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSN 172
Query: 82 --GYEAKA-----FVCIAQADKSKKHK-------GITAFIIPMDSPGLSLGKKE------ 121
G++ K VC D SK I ++ ++ ++ KK+
Sbjct: 173 SGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRET--IANNKKDAYQILG 230
Query: 122 --DKLGIRASSTCNVILEDVKIPLDSVL---GKEGEGFKVGLTGIDCARIGMASQGIGIA 176
+ G +S + + +P +++L G + +G + A +G + IG A
Sbjct: 231 EPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVG--AMAIGTA 288
Query: 177 QAAFDCAMEYA 187
+AAF+ A+ +A
Sbjct: 289 RAAFEEALVFA 299
>pdb|2ZAF|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 36/191 (18%)
Query: 29 KETYLPSFV--DGTNVGCFGISEPGSGSDAAN-----MLTTARKESDHWVLNGTKSWITN 81
+E +L F+ +G + SEP ++ + TTARK + WV++G K W +N
Sbjct: 113 QEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSN 172
Query: 82 --GYEAKA-----FVCIAQADKSKKHK-------GITAFIIPMDSPGLSLGKKE------ 121
G++ K VC D SK I ++ ++ ++ KK+
Sbjct: 173 SGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRET--IANNKKDAYQILG 230
Query: 122 --DKLGIRASSTCNVILEDVKIPLDSVL---GKEGEGFKVGLTGIDCARIGMASQGIGIA 176
+ G +S + + +P +++L G + +G + A +G + IG A
Sbjct: 231 EPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVG--AMAIGTA 288
Query: 177 QAAFDCAMEYA 187
+AAF+ A+ +A
Sbjct: 289 RAAFEEALVFA 299
>pdb|2C12|A Chain A, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|B Chain B, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|C Chain C, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|D Chain D, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|E Chain E, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|F Chain F, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
Length = 439
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 36/191 (18%)
Query: 29 KETYLPSFV--DGTNVGCFGISEPGSGSDAAN-----MLTTARKESDHWVLNGTKSWITN 81
+E +L F+ +G + SEP ++ + TTARK + WV++G K W +N
Sbjct: 113 QEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSN 172
Query: 82 --GYEAKA-----FVCIAQADKSKKHK-------GITAFIIPMDSPGLSLGKKE------ 121
G++ K VC D SK I ++ ++ ++ KK+
Sbjct: 173 SGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRET--IANNKKDAYQILG 230
Query: 122 --DKLGIRASSTCNVILEDVKIPLDSVL---GKEGEGFKVGLTGIDCARIGMASQGIGIA 176
+ G +S + + +P +++L G + +G + A +G + IG A
Sbjct: 231 EPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVG--AMAIGTA 288
Query: 177 QAAFDCAMEYA 187
+AAF+ A+ +A
Sbjct: 289 RAAFEEALVFA 299
>pdb|3D9G|A Chain A, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|B Chain B, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|C Chain C, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|D Chain D, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
Length = 438
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 36/191 (18%)
Query: 29 KETYLPSFV--DGTNVGCFGISEPGSGSDAAN-----MLTTARKESDHWVLNGTKSWITN 81
+E +L F+ +G + SEP ++ + TTARK + WV++G K W +N
Sbjct: 112 QEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSN 171
Query: 82 --GYEAKA-----FVCIAQADKSKKHK-------GITAFIIPMDSPGLSLGKKE------ 121
G++ K VC D SK I ++ ++ ++ KK+
Sbjct: 172 SGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRET--IANNKKDAYQILG 229
Query: 122 --DKLGIRASSTCNVILEDVKIPLDSVL---GKEGEGFKVGLTGIDCARIGMASQGIGIA 176
+ G +S + + +P +++L G + +G + A +G + IG A
Sbjct: 230 EPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVG--AMAIGTA 287
Query: 177 QAAFDCAMEYA 187
+AAF+ A+ +A
Sbjct: 288 RAAFEEALVFA 298
>pdb|3D9F|A Chain A, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|B Chain B, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|C Chain C, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|D Chain D, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
Length = 438
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 36/191 (18%)
Query: 29 KETYLPSFV--DGTNVGCFGISEPGSGSDAAN-----MLTTARKESDHWVLNGTKSWITN 81
+E +L F+ +G + SEP ++ + TTARK + WV++G K W +N
Sbjct: 112 QEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSN 171
Query: 82 --GYEAKA-----FVCIAQADKSKKHK-------GITAFIIPMDSPGLSLGKKE------ 121
G++ K VC D SK I ++ ++ ++ KK+
Sbjct: 172 SGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRET--IANNKKDAYQILG 229
Query: 122 --DKLGIRASSTCNVILEDVKIPLDSVL---GKEGEGFKVGLTGIDCARIGMASQGIGIA 176
+ G +S + + +P +++L G + +G + A +G + IG A
Sbjct: 230 EPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMAAALVG--AMAIGTA 287
Query: 177 QAAFDCAMEYA 187
+AAF+ A+ +A
Sbjct: 288 RAAFEEALVFA 298
>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|B Chain B, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|C Chain C, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|D Chain D, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
Length = 439
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 81/191 (42%), Gaps = 36/191 (18%)
Query: 29 KETYLPSFV--DGTNVGCFGISEPGSGSD-----AANMLTTARKESDHWVLNGTKSWITN 81
+E +L F+ +G + SEP ++ + TTARK + WV++G K W +N
Sbjct: 113 QEKFLKPFISGEGEPLASLXHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSN 172
Query: 82 --GYEAKA-----FVCIAQADKSKKHK-------GITAFIIPMDSPGLSLGKKE------ 121
G++ K VC D SK I ++ ++ ++ KK+
Sbjct: 173 SGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRET--IANNKKDAYQILG 230
Query: 122 --DKLGIRASSTCNVILEDVKIPLDSVL---GKEGEGFKVGLTGIDCARIGMASQGIGIA 176
+ G +S + + +P +++L G + +G A +G + IG A
Sbjct: 231 EPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAXSAALVG--AXAIGTA 288
Query: 177 QAAFDCAMEYA 187
+AAF+ A+ +A
Sbjct: 289 RAAFEEALVFA 299
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 32.7 bits (73), Expect = 0.16, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 68/146 (46%), Gaps = 16/146 (10%)
Query: 19 LINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTAR--KESDHWVLNG-- 74
L+++ ++Q+ ++P++ + G + +E G G+ + TTA ++ ++LN
Sbjct: 111 LLHQATAEQQERFFMPAW-NLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPT 169
Query: 75 ---TKSWITN-GYEAKAFVCIAQADKSKKHKGITAFIIPMDS-------PGLSLGKKEDK 123
K W G + + +AQ + G+ AF++P+ PG+++G K
Sbjct: 170 VTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPK 229
Query: 124 LGIRASSTCNVILEDVKIPLDSVLGK 149
G + +++ +IP +++L K
Sbjct: 230 FGYEEMDNGYLKMDNYRIPRENMLMK 255
>pdb|2RFQ|A Chain A, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
pdb|2RFQ|B Chain B, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
pdb|2RFQ|C Chain C, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
pdb|2RFQ|D Chain D, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
Length = 394
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 24/139 (17%)
Query: 70 WVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRAS 129
+ +NG +W + A V K + +F+IP + + + +G+R +
Sbjct: 133 YTVNGAWAWSSGCDHASWAVLGGPVIKDGRPVDFVSFLIPRED--YRIDDVWNVVGLRGT 190
Query: 130 STCNVILEDVKIPLDSVLGKEGEGFKV--GLTGIDCAR---------------IGMASQG 172
+ V++EDV +P VL FK LT R +++
Sbjct: 191 GSNTVVVEDVFVPTHRVL-----SFKAXSNLTAPGLERNTAPVYKXPWGTIHPTTISAPI 245
Query: 173 IGIAQAAFDCAMEYAGKRI 191
+G A A+D +E+ GKR+
Sbjct: 246 VGXAYGAYDAHVEHQGKRV 264
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165
pdb|3VMW|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165 In Complex With Trigalacturonate
Length = 326
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Query: 72 LNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASST 131
+NGT IT G ++ + + K H+G I + G+ + D +GIR S+
Sbjct: 52 VNGT---ITQGNSPQSLIDV------KNHRGKAHEIKNISIIGVGTNGEFDGIGIRLSNA 102
Query: 132 CNVILEDVKIPLDSVLGKEGEGFKVGLT 159
N+I+++V I +EGEG + +T
Sbjct: 103 HNIIIQNVSIH----HVREGEGTAIEVT 126
>pdb|3AHI|A Chain A, H320a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With Acetyl Thiamine Diphosphate
Length = 845
Score = 28.9 bits (63), Expect = 1.9, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 24/109 (22%)
Query: 34 PSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQ 93
P F+DG GS A L +AR +H+ + K W+ + + F
Sbjct: 325 PKFIDGKKT-------EGSWRAAQVPLASARDTEEHFEV--LKGWMESYKPEELF----N 371
Query: 94 ADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIP 142
AD S K +TAF + K E ++G ++ VI ED+K+P
Sbjct: 372 ADGSIKDD-VTAF----------MPKGELRIGANPNANGGVIREDLKLP 409
>pdb|1Q15|A Chain A, Carbapenam Synthetase
pdb|1Q15|B Chain B, Carbapenam Synthetase
pdb|1Q15|C Chain C, Carbapenam Synthetase
pdb|1Q15|D Chain D, Carbapenam Synthetase
pdb|1Q19|A Chain A, Carbapenam Synthetase
pdb|1Q19|B Chain B, Carbapenam Synthetase
pdb|1Q19|C Chain C, Carbapenam Synthetase
pdb|1Q19|D Chain D, Carbapenam Synthetase
Length = 503
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 25/96 (26%)
Query: 44 CFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNG--------------YEAKAFV 89
CF I EP ++T +R S V+ G K+W+TN +E +A V
Sbjct: 105 CFFIDEPNG---ELTVITESRGFSPVHVVQGKKAWMTNSLKLVTAAEGEGALWFEEEALV 161
Query: 90 C--IAQAD------KSKKHKGITAFIIPMDSPGLSL 117
C + +AD +++ K ++ DS G S
Sbjct: 162 CQSLMRADTYTPVKNAQRLKPGAVHVLTHDSEGYSF 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,370,240
Number of Sequences: 62578
Number of extensions: 264047
Number of successful extensions: 745
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 631
Number of HSP's gapped (non-prelim): 58
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)