Query psy1303
Match_columns 206
No_of_seqs 118 out of 1217
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 17:35:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0139|consensus 100.0 3.7E-51 8E-56 319.9 9.4 205 1-206 111-315 (398)
2 KOG0140|consensus 100.0 2.1E-46 4.7E-51 289.2 10.5 205 1-206 102-309 (408)
3 KOG0141|consensus 100.0 1.5E-45 3.3E-50 284.8 9.0 205 2-206 118-324 (421)
4 cd01156 IVD Isovaleryl-CoA deh 100.0 2.1E-42 4.5E-47 287.3 20.5 206 1-206 76-281 (376)
5 PLN02519 isovaleryl-CoA dehydr 100.0 2.2E-42 4.8E-47 289.6 20.6 206 1-206 102-307 (404)
6 cd01162 IBD Isobutyryl-CoA deh 100.0 1.1E-41 2.3E-46 283.0 20.1 204 1-206 75-278 (375)
7 cd01160 LCAD Long chain acyl-C 100.0 2.4E-41 5.3E-46 280.5 20.7 202 5-206 76-278 (372)
8 cd01151 GCD Glutaryl-CoA dehyd 100.0 3.9E-41 8.5E-46 280.6 20.7 202 1-206 86-287 (386)
9 cd01157 MCAD Medium chain acyl 100.0 2.7E-41 5.8E-46 280.9 19.6 204 2-206 76-282 (378)
10 cd01158 SCAD_SBCAD Short chain 100.0 3.4E-41 7.4E-46 279.7 20.2 206 1-206 73-278 (373)
11 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 3.1E-41 6.8E-46 279.9 19.8 203 2-206 76-279 (372)
12 TIGR03203 pimD_small pimeloyl- 100.0 5.1E-41 1.1E-45 279.0 18.9 189 15-206 92-281 (378)
13 cd01161 VLCAD Very long chain 100.0 7.6E-41 1.6E-45 280.7 19.7 205 2-206 99-309 (409)
14 PLN02636 acyl-coenzyme A oxida 100.0 5.7E-41 1.2E-45 294.1 19.0 205 2-206 134-381 (686)
15 PTZ00461 isovaleryl-CoA dehydr 100.0 1.2E-40 2.5E-45 279.7 19.5 200 2-206 112-312 (410)
16 PRK03354 crotonobetainyl-CoA d 100.0 1.7E-40 3.7E-45 276.2 20.3 203 1-206 80-282 (380)
17 KOG0138|consensus 100.0 6.5E-42 1.4E-46 264.0 10.7 200 2-205 129-330 (432)
18 PRK12341 putative acyl-CoA deh 100.0 2E-40 4.3E-45 275.9 20.1 191 15-206 91-283 (381)
19 PLN02312 acyl-CoA oxidase 100.0 2.2E-40 4.7E-45 289.9 19.9 205 2-206 146-387 (680)
20 PLN02526 acyl-coenzyme A oxida 100.0 3.4E-40 7.4E-45 276.9 20.3 201 2-206 103-303 (412)
21 PRK13026 acyl-CoA dehydrogenas 100.0 3.8E-40 8.3E-45 289.2 20.4 204 2-206 152-374 (774)
22 PRK09463 fadE acyl-CoA dehydro 100.0 4.6E-40 1E-44 289.5 19.4 204 2-206 153-375 (777)
23 cd01150 AXO Peroxisomal acyl-C 100.0 1.9E-39 4.2E-44 282.6 18.2 206 1-206 94-337 (610)
24 PTZ00460 acyl-CoA dehydrogenas 100.0 3.2E-39 6.9E-44 281.5 19.0 205 2-206 88-324 (646)
25 COG1960 CaiA Acyl-CoA dehydrog 100.0 4.5E-39 9.8E-44 268.8 18.0 205 2-206 83-293 (393)
26 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 1E-38 2.3E-43 266.7 20.1 191 16-206 100-297 (394)
27 cd01154 AidB Proteins involved 100.0 9E-39 2E-43 268.6 19.8 197 4-206 108-315 (418)
28 cd00567 ACAD Acyl-CoA dehydrog 100.0 1.6E-38 3.5E-43 259.2 20.7 192 15-206 43-235 (327)
29 cd01153 ACAD_fadE5 Putative ac 100.0 1.2E-37 2.5E-42 261.3 21.1 198 1-203 79-287 (407)
30 TIGR03204 pimC_large pimeloyl- 100.0 1.3E-37 2.7E-42 260.1 19.9 188 15-206 95-283 (395)
31 PRK11561 isovaleryl CoA dehydr 100.0 6E-37 1.3E-41 261.6 18.8 183 15-206 139-340 (538)
32 KOG0137|consensus 100.0 8.4E-38 1.8E-42 259.1 13.0 204 2-205 153-362 (634)
33 PLN02876 acyl-CoA dehydrogenas 100.0 5.9E-37 1.3E-41 275.8 19.4 190 17-206 526-721 (822)
34 cd01163 DszC Dibenzothiophene 100.0 2E-36 4.4E-41 251.5 18.2 198 1-206 65-267 (377)
35 PTZ00456 acyl-CoA dehydrogenas 100.0 3E-36 6.4E-41 262.1 18.5 201 2-206 143-371 (622)
36 PLN02443 acyl-coenzyme A oxida 100.0 5.6E-36 1.2E-40 261.6 19.2 196 8-203 98-325 (664)
37 cd01152 ACAD_fadE6_17_26 Putat 100.0 1E-35 2.2E-40 247.6 16.3 199 1-206 78-277 (380)
38 KOG1469|consensus 100.0 5.4E-35 1.2E-39 222.8 13.2 187 17-203 89-282 (392)
39 cd01159 NcnH Naphthocyclinone 100.0 2.1E-31 4.7E-36 220.9 11.7 190 1-206 65-266 (370)
40 PTZ00457 acyl-CoA dehydrogenas 100.0 3.8E-30 8.3E-35 218.7 18.6 171 2-188 95-273 (520)
41 KOG0135|consensus 99.9 2E-26 4.3E-31 190.4 12.6 205 1-206 117-359 (661)
42 TIGR02309 HpaB-1 4-hydroxyphen 99.9 1.5E-21 3.3E-26 165.5 12.1 173 27-206 127-326 (477)
43 KOG0136|consensus 99.8 1.4E-20 3E-25 158.9 10.6 201 6-206 108-341 (670)
44 PF02770 Acyl-CoA_dh_M: Acyl-C 99.7 1.5E-16 3.3E-21 94.8 7.5 52 44-95 1-52 (52)
45 PF11794 HpaB_N: 4-hydroxyphen 99.1 1E-09 2.2E-14 86.2 9.9 121 27-147 123-263 (264)
46 COG2368 Aromatic ring hydroxyl 99.0 2.9E-08 6.3E-13 82.8 14.1 122 27-148 131-276 (493)
47 TIGR02310 HpaB-2 4-hydroxyphen 98.9 1.2E-08 2.6E-13 87.3 11.6 122 27-148 136-280 (519)
48 PF00441 Acyl-CoA_dh_1: Acyl-C 98.5 1.6E-07 3.4E-12 67.9 4.4 55 151-205 1-55 (150)
49 PF02771 Acyl-CoA_dh_N: Acyl-C 97.6 3.6E-05 7.8E-10 52.8 2.0 39 2-40 75-113 (113)
50 PF14749 Acyl-CoA_ox_N: Acyl-c 94.7 0.033 7.2E-07 39.0 3.0 37 6-42 89-125 (125)
51 PF04115 Ureidogly_hydro: Urei 36.5 1.7E+02 0.0037 21.4 6.8 49 74-123 80-129 (165)
52 PF12584 TRAPPC10: Trafficking 36.0 1.3E+02 0.0029 21.4 5.5 13 65-77 66-78 (147)
53 PF05428 CRF-BP: Corticotropin 26.9 23 0.0005 28.6 0.2 15 68-82 114-128 (311)
54 PF05284 DUF736: Protein of un 24.3 2.3E+02 0.0051 19.1 6.5 55 83-139 23-78 (107)
No 1
>KOG0139|consensus
Probab=100.00 E-value=3.7e-51 Score=319.85 Aligned_cols=205 Identities=50% Similarity=0.837 Sum_probs=198.5
Q ss_pred CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT 80 (206)
Q Consensus 1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~ 80 (206)
+|+|++.+..+|+.+...+|..+|+++||++|+|.+. |+.+++||+|||+.|||.....|+|+++||.|+|||.|.|+|
T Consensus 111 ~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~~-~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWIt 189 (398)
T KOG0139|consen 111 VDASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKLT-GDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWIT 189 (398)
T ss_pred cCccceeEEEecccccchHHHHhCcHHHHhhhcchhh-ccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeec
Confidence 5899999999999999999999999999998887765 888999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303 81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG 160 (206)
Q Consensus 81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~ 160 (206)
|+.+|++++|++..++..++.++++|+||+|+||+++..+.+++|||++.++.++|+||+||++++||+.|.|+.+....
T Consensus 190 N~~~A~~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~ 269 (398)
T KOG0139|consen 190 NAGEADWFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEV 269 (398)
T ss_pred CCcccceEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHh
Confidence 99999999999999877889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
|+.+|+.++++.+|+++.|+|.+++|+++|.+||++|.+||.+||+
T Consensus 270 Ln~gRIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhq 315 (398)
T KOG0139|consen 270 LNAGRIGIGAQMLGLAQGCFDETIPYAQERLQFGKRLLDFQGLQHQ 315 (398)
T ss_pred cCccceeehhhhhhhhHhHHHhhhHHHHHHHHhcchhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999984
No 2
>KOG0140|consensus
Probab=100.00 E-value=2.1e-46 Score=289.22 Aligned_cols=205 Identities=41% Similarity=0.695 Sum_probs=198.0
Q ss_pred CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT 80 (206)
Q Consensus 1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~ 80 (206)
+|-++...+..|. +++++|-.+|++|||++||+++++..+++++++|||+.|||...+.|+|++.+|.|+|||.|.|+|
T Consensus 102 GCtg~~~~I~~~~-l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawIt 180 (408)
T KOG0140|consen 102 GCTGIQTAISIHN-LAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWIT 180 (408)
T ss_pred cchhHHHHHhccc-hhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeee
Confidence 5788888999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCC---CCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHH
Q psy1303 81 NGYEAKAFVCIAQADKS---KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVG 157 (206)
Q Consensus 81 ~~~~a~~~~v~a~~~~~---~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~ 157 (206)
|+.+++|++|++|++++ +..+.+..|+|+.|+||++..+....+|.|..++-.+.|+||+||.+++||.++.||.+.
T Consensus 181 g~G~anwyfVlaRtd~~pk~p~~Kaft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvA 260 (408)
T KOG0140|consen 181 GAGHANWYFVLARTDPDPKTPAGKAFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVA 260 (408)
T ss_pred cCCccceEEEEEecCCCCCCCCCcceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceeh
Confidence 99999999999999875 567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 158 LTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 158 ~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
...|+..|..+++..+|.++++++++.+|+..|++||+||+++|.+|++
T Consensus 261 m~~fd~tRp~vAa~alG~A~r~ld~a~ky~~eRK~FG~~iA~hQ~vqF~ 309 (408)
T KOG0140|consen 261 MGGFDKTRPNVAAGALGLAQRCLDEATKYALERKAFGTPIANHQAVQFM 309 (408)
T ss_pred hhhccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhCcChhhhhhHHHH
Confidence 9999999999999999999999999999999999999999999999863
No 3
>KOG0141|consensus
Probab=100.00 E-value=1.5e-45 Score=284.79 Aligned_cols=205 Identities=40% Similarity=0.700 Sum_probs=197.0
Q ss_pred CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303 2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN 81 (206)
Q Consensus 2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~ 81 (206)
..++|+.|..|.+++...|.+.|++||+++|+|++.+|+.++++|+|||+.|||...+.+.|++++++|+|||.|.|+||
T Consensus 118 ~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witN 197 (421)
T KOG0141|consen 118 SGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITN 197 (421)
T ss_pred cCCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEec
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCC--CCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHH
Q psy1303 82 GYEAKAFVCIAQADKS--KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLT 159 (206)
Q Consensus 82 ~~~a~~~~v~a~~~~~--~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~ 159 (206)
++.||.++|.|+++.. +...+++.|+|+...||++..+..+++|||+.+++++.|+|.+||+++++|..+.|+-+++.
T Consensus 198 G~~advliVyAkTd~~a~~~~hGIt~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkGvYvlMs 277 (421)
T KOG0141|consen 198 GPDADVLIVYAKTDHSAVPPSHGITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKGVYVLMS 277 (421)
T ss_pred CCCCcEEEEEEecCCCCCCCcCceEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCceEEEEec
Confidence 9999999999999854 56789999999999999999999999999999999999999999999999999999988888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 160 GIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 160 ~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
-++..|+.+++..+|+++.++|.+..|+++|++||+++++||.+|++
T Consensus 278 gLd~ERLvla~gplglmqa~~d~~~~Y~~qR~afgk~ig~fQ~~Qgk 324 (421)
T KOG0141|consen 278 GLDLERLVLAAGPLGLMQAALDETFPYAHQRKAFGKKIGHFQLLQGK 324 (421)
T ss_pred CCChhHhhhccCchHHHHHHHHHhhhHHHHHHHhCCchhHHHHHHhH
Confidence 99999999999999999999999999999999999999999999963
No 4
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=2.1e-42 Score=287.34 Aligned_cols=206 Identities=42% Similarity=0.696 Sum_probs=191.4
Q ss_pred CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT 80 (206)
Q Consensus 1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~ 80 (206)
.|+++++.+.+|...+...|..+++++|+++|++++++|++++++++|||+.|+|...+++++++++|||+|||+|+|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs 155 (376)
T cd01156 76 ASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWIT 155 (376)
T ss_pred cchhHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEec
Confidence 47888888888875566789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303 81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG 160 (206)
Q Consensus 81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~ 160 (206)
++..+|+++|.++.+++++..++.+|+||++.+|+++.+.|+++|+++++++++.|+||+||++++++..+.|+......
T Consensus 156 ~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~ 235 (376)
T cd01156 156 NGPDADTLVVYAKTDPSAGAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSG 235 (376)
T ss_pred CCCcCCEEEEEEEeCCCCCCCceEEEEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHHH
Confidence 99999999999997654445678899999999999998899999999999999999999999999999999999888888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
+...|+.+++.++|+++++++.+++|+++|++||+|+.++|.+|++
T Consensus 236 ~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~ 281 (376)
T cd01156 236 LDYERLVLAGGPIGIMQAALDVAIPYAHQRKQFGQPIGEFQLVQGK 281 (376)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCcchHHhHHHHHH
Confidence 9999999999999999999999999999999999999999999864
No 5
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=2.2e-42 Score=289.55 Aligned_cols=206 Identities=39% Similarity=0.656 Sum_probs=191.4
Q ss_pred CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT 80 (206)
Q Consensus 1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~ 80 (206)
+|+++++++.+|...+...|..+++++|+++|++.+++|+.++++++|||+.|+|...+.+++++++|||+|||+|.|++
T Consensus 102 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs 181 (404)
T PLN02519 102 ASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCT 181 (404)
T ss_pred hcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeec
Confidence 47889999888875566788999999999999999999999999999999999999889999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303 81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG 160 (206)
Q Consensus 81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~ 160 (206)
++.++|+++|.++.++++++.++.+|+||++.||+++.++|+++|+++++++++.|+||+||++++++.+++|+......
T Consensus 182 ~a~~ad~~~v~a~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~~~~ 261 (404)
T PLN02519 182 NGPVAQTLVVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSG 261 (404)
T ss_pred CCCcCCEEEEEEEeCCCCCCCeeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHHHHHHH
Confidence 99999999999998654455678899999999999999999999999999999999999999999999999999877788
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
++..++.+++.++|+++++++.+++|+++|.+||+|+.++|.+|++
T Consensus 262 ~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~pl~~~~~v~~~ 307 (404)
T PLN02519 262 LDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGRPIGEFQFIQGK 307 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHH
Confidence 8899999999999999999999999999999999999999999864
No 6
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=1.1e-41 Score=282.99 Aligned_cols=204 Identities=39% Similarity=0.736 Sum_probs=190.0
Q ss_pred CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT 80 (206)
Q Consensus 1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~ 80 (206)
+|+++++.+.+|. ++..++..+++++|+++|++++.+|+.++++++|||++|+|...+.++++++++||+|||+|+|++
T Consensus 75 ~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs 153 (375)
T cd01162 75 GCVSTAAYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFIS 153 (375)
T ss_pred hchhHHHHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEec
Confidence 4788888888887 777888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303 81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG 160 (206)
Q Consensus 81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~ 160 (206)
++.++|+++|.++.+++ +..++.+|+||++.||+++.+.|+++|+++++++++.||||+||++++++.++.|+......
T Consensus 154 ~~~~ad~~~v~a~~~~~-~~~~~~~~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~ 232 (375)
T cd01162 154 GAGDSDVYVVMARTGGE-GPKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAG 232 (375)
T ss_pred CCCCCCEEEEEEEecCC-CCCceEEEEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHHH
Confidence 99999999999997542 34567899999999999999999999999999999999999999999999999999887788
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
+...|+..++.++|+++++++.+++|+++|.+||+||.++|.+|++
T Consensus 233 l~~~r~~~aa~~lG~a~~al~~~~~~a~~R~~fg~~l~~~~~vq~~ 278 (375)
T cd01162 233 LNGGRLNIASCSLGAAQAALDLARAYLEERKQFGKPLADFQALQFK 278 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHhhHHHHHH
Confidence 8899999999999999999999999999999999999999999874
No 7
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=2.4e-41 Score=280.54 Aligned_cols=202 Identities=33% Similarity=0.608 Sum_probs=186.9
Q ss_pred chhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeCCCC
Q psy1303 5 TSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGYE 84 (206)
Q Consensus 5 ~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~ 84 (206)
.++.+.+|..++..++..+++++|+++|++++.+|+.++++++|||+.|+|...+.++++++++||+|||+|.|+|++.+
T Consensus 76 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ 155 (372)
T cd01160 76 SGPGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGML 155 (372)
T ss_pred hHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCc
Confidence 46677777756677889999999999999999999999999999999999998899999999999999999999999999
Q ss_pred CCEEEEEEEeCCC-CCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHhhhh
Q psy1303 85 AKAFVCIAQADKS-KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDC 163 (206)
Q Consensus 85 a~~~~v~a~~~~~-~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~~~ 163 (206)
||+++|.++++++ +++.++.+|+||++.||+++.++|+.+||++++++++.|+||+||++++|+.++.|+......+..
T Consensus 156 Ad~~~v~a~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~ 235 (372)
T cd01160 156 ADVVIVVARTGGEARGAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQ 235 (372)
T ss_pred cCEEEEEEEeCCCCCCCCceEEEEEeCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHH
Confidence 9999999998653 345678899999999999998899999999999999999999999999999999999888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 164 ARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 164 ~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
.++..++.++|+++++++.+++|+++|++||+|+.++|.+|++
T Consensus 236 ~~~~~aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~ 278 (372)
T cd01160 236 ERLLIAAGALAAAEFMLEETRNYVKQRKAFGKTLAQLQVVRHK 278 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHhhHHHHHH
Confidence 9999999999999999999999999999999999999999874
No 8
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=3.9e-41 Score=280.59 Aligned_cols=202 Identities=35% Similarity=0.594 Sum_probs=185.6
Q ss_pred CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT 80 (206)
Q Consensus 1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~ 80 (206)
+|+|+++.+.+|..++...|..+++++|+++|++++++|++++++++|||+.|+|+..+.+++++++|||+|||+|.|+|
T Consensus 86 ~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is 165 (386)
T cd01151 86 VDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWIT 165 (386)
T ss_pred hChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeec
Confidence 36788888878775566778899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303 81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG 160 (206)
Q Consensus 81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~ 160 (206)
++..||+++|.++.+++ .++.+|+||++.||+++.+.|+++|+++++++++.|+||+||++++++. ++|+......
T Consensus 166 ~~~~Ad~~lv~ar~~~~---~~~~~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~-~~g~~~~~~~ 241 (386)
T cd01151 166 NSPIADVFVVWARNDET---GKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPG-AEGLRGPFKC 241 (386)
T ss_pred CCCcCCEEEEEEEECCC---CcEEEEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCc-cccHHHHHHH
Confidence 99999999999998642 4677899999999999999999999999999999999999999999986 4688777778
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
+...|+.+++.++|+++++++.+++|+++|.+||+|++++|.+|++
T Consensus 242 ~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~ 287 (386)
T cd01151 242 LNNARYGIAWGALGAAEDCYHTARQYVLDRKQFGRPLAAFQLVQKK 287 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCchhhhHHHHHH
Confidence 8899999999999999999999999999999999999999999874
No 9
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=2.7e-41 Score=280.89 Aligned_cols=204 Identities=36% Similarity=0.599 Sum_probs=185.7
Q ss_pred CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303 2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN 81 (206)
Q Consensus 2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~ 81 (206)
|+++++.+..|. ++...+..+++++|+++||+++++|+.+.++++|||+.|+|...+.+++++++|||+|||+|.|+|+
T Consensus 76 ~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~ 154 (378)
T cd01157 76 CTGVQTAIEANS-LGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITN 154 (378)
T ss_pred hhHHHHHHHhhh-hhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecC
Confidence 667666665655 6666777789999999999999999999999999999999999899999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCCC---CCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHH
Q psy1303 82 GYEAKAFVCIAQADKSK---KHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGL 158 (206)
Q Consensus 82 ~~~a~~~~v~a~~~~~~---~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~ 158 (206)
+.+||+++|.+++++++ +.+++.+|+||++.||+++.+.|+.+|+++++++++.||||+||++++++.++.|+....
T Consensus 155 ~~~ad~~lv~a~~~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~ 234 (378)
T cd01157 155 GGKANWYFLLARSDPDPKCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAM 234 (378)
T ss_pred CccCCEEEEEEEeCCcccCCCCCceEEEEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHH
Confidence 99999999999976432 235788999999999999999999999999999999999999999999998888998888
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 159 TGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 159 ~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
..+...|+.+++.++|+++++++.+++|+++|.+||+||.++|.+|++
T Consensus 235 ~~~~~~r~~~aa~~lG~a~~~l~~~~~~~~~R~~fg~~i~~~q~vq~~ 282 (378)
T cd01157 235 GAFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLIAEHQAVSFM 282 (378)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHHhHHHHHH
Confidence 888889999999999999999999999999999999999999999874
No 10
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=3.4e-41 Score=279.69 Aligned_cols=206 Identities=53% Similarity=0.879 Sum_probs=191.7
Q ss_pred CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT 80 (206)
Q Consensus 1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~ 80 (206)
.|+|+++++.+|...+...+..+++++|+++|++++.+|+.++++++|||++|++...++++++++++||+|||+|.|++
T Consensus 73 ~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vs 152 (373)
T cd01158 73 VDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWIT 152 (373)
T ss_pred hCccHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEc
Confidence 48899999999986666788999999999999999999999999999999999998889999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303 81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG 160 (206)
Q Consensus 81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~ 160 (206)
++.++|+++|.++.+++++..++.+|+||.+.||+++.++|+.+||++++++.+.|+||+||++++++.++.++......
T Consensus 153 g~~~ad~~lv~a~~~~~~~~~~~~~~lvp~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~ 232 (373)
T cd01158 153 NGGEADFYIVFAVTDPSKGYRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQT 232 (373)
T ss_pred CCCcCCEEEEEEEcCCCCCCCceEEEEEcCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHH
Confidence 99999999999987554445678899999999999999999999999999999999999999999999999999887788
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
+...|+..++.++|+++++++.+++|+++|.+||+|+.++|.+|++
T Consensus 233 ~~~~r~~~~a~~lG~a~~~l~~~~~~~~~R~~~g~~~~~~~~v~~~ 278 (373)
T cd01158 233 LDGGRIGIAAQALGIAQAALDAAVDYAKERKQFGKPIADFQGIQFK 278 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCcHHHhHHHHHH
Confidence 8899999999999999999999999999999999999999999874
No 11
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=3.1e-41 Score=279.93 Aligned_cols=203 Identities=31% Similarity=0.529 Sum_probs=185.4
Q ss_pred CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303 2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN 81 (206)
Q Consensus 2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~ 81 (206)
|++++++...+. ++...+..+++++|+++||+++.+|+.++++++|||+.|+|...+.+++++++|||+|||+|.|+|+
T Consensus 76 ~~s~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~ 154 (372)
T TIGR03207 76 DLSMSYVNLLAS-LNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISA 154 (372)
T ss_pred CccHHHHHHhhh-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcC
Confidence 677777655555 6667788899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCC-CCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303 82 GYEAKAFVCIAQADKS-KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG 160 (206)
Q Consensus 82 ~~~a~~~~v~a~~~~~-~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~ 160 (206)
+.++|+++|.++.+++ ++..++.+|+||++.||+++ .+|+.+|+++++++++.|+||+||++++++.++.|+......
T Consensus 155 ~~~ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~gv~~-~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~ 233 (372)
T TIGR03207 155 ADQADAAVVFARTGSEAEGARGISAFLVPMDLPGITR-NRFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQG 233 (372)
T ss_pred CCcCCEEEEEEEcCCCCCCCCceEEEEEcCCCCCeec-CcchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHHH
Confidence 9999999999997542 23456889999999999997 579999999999999999999999999999999999888888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
++..|+.++++++|+++++++.+++|+++|++||+|+.++|.||++
T Consensus 234 l~~~r~~~a~~~~G~a~~al~~a~~~~~~R~~fg~~i~~~q~v~~~ 279 (372)
T TIGR03207 234 FDFSRALIGLQVLAVARAALDETWRYVAERQAFGKPLSAFQGVSHP 279 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhhhHhHHHH
Confidence 9999999999999999999999999999999999999999999874
No 12
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=5.1e-41 Score=278.95 Aligned_cols=189 Identities=25% Similarity=0.470 Sum_probs=174.1
Q ss_pred hhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeCCCCCCEEEEEEEe
Q psy1303 15 LYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQA 94 (206)
Q Consensus 15 ~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~ 94 (206)
++..++..+|+++||++||+++++|+.++++++|||+.|+|...+++++++++|+|+|||+|.||+++..||+++|++++
T Consensus 92 ~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a~~Ad~~lv~ar~ 171 (378)
T TIGR03203 92 IGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGETADTLIVTART 171 (378)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCCccCCEEEEEEec
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC-CCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHhhhhHHHHHHHHHH
Q psy1303 95 DKS-KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGI 173 (206)
Q Consensus 95 ~~~-~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~~~~~~~~aa~~~ 173 (206)
+++ +++.++++|+||.+.||+++.+.++.+|+ .++++.||||+||+++++|.+++|+..+...++..|+.+++.++
T Consensus 172 ~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~g~---~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~ 248 (378)
T TIGR03203 172 KGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGL---HAADITFTGVVVGADAAIGDPENALPLIERVVDDARAALCAEAV 248 (378)
T ss_pred CCCCCCCCceEEEEEECCCCCceeccccccCCC---ceeeEEECCCcccHHhhcCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 543 24567899999999999999766666665 56899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 174 GIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 174 G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
|+++++++.+++|+++|+|||+||++||.|||+
T Consensus 249 G~a~~al~~a~~ya~~R~qFG~pi~~~Q~vq~~ 281 (378)
T TIGR03203 249 GLMDESLKTTVEYIKTRKQFGVPIGSFQVLQHR 281 (378)
T ss_pred HHHHHHHHHHHHHHhcCeecCccchhhHHHHHH
Confidence 999999999999999999999999999999985
No 13
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=7.6e-41 Score=280.74 Aligned_cols=205 Identities=40% Similarity=0.623 Sum_probs=186.6
Q ss_pred CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEE--eCCEEEEeeeeeee
Q psy1303 2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARK--ESDHWVLNGTKSWI 79 (206)
Q Consensus 2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~--~~~g~~l~G~k~~v 79 (206)
|+++++.+.+|..++...+..+++++|+++|++++++|+.++++++|||+.|+|...+.+++++ ++++|+|||+|.|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~v 178 (409)
T cd01161 99 DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWI 178 (409)
T ss_pred ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEEee
Confidence 6778888888874555567889999999999999999999999999999999999989999998 45689999999999
Q ss_pred eCCCCCCEEEEEEEeCC--CCC--CCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHH
Q psy1303 80 TNGYEAKAFVCIAQADK--SKK--HKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFK 155 (206)
Q Consensus 80 ~~~~~a~~~~v~a~~~~--~~~--~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~ 155 (206)
||+.+||+++|.++.++ .++ ++++.+|+||++.+|+++.+.|+++|+++++++++.|+||+||++++++.+++|+.
T Consensus 179 s~~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp~~~~gv~~~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g~~ 258 (409)
T cd01161 179 TNGGIADIFTVFAKTEVKDATGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFK 258 (409)
T ss_pred cCCCcCCEEEEEEEcCCCCCCCCCCCceEEEEEeCCCCCcccCCcccccCCCCCCceEEEeccEEECHHHcCCCCChHHH
Confidence 99999999999998752 111 35688999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 156 VGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 156 ~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
.....+...|+..++.++|+++++++.+++|+++|.+||+|+.++|.+|++
T Consensus 259 ~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~l~~~q~vq~~ 309 (409)
T cd01161 259 VAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGKKIHEFGLIQEK 309 (409)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHH
Confidence 888889999999999999999999999999999999999999999999974
No 14
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=5.7e-41 Score=294.05 Aligned_cols=205 Identities=28% Similarity=0.478 Sum_probs=187.8
Q ss_pred CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEe--CCEEEEe-----e
Q psy1303 2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKE--SDHWVLN-----G 74 (206)
Q Consensus 2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~--~~g~~l~-----G 74 (206)
|++++..+.+|..++...|..+|+++|+++||+++.+|++++|+|+|||++|||+..++|+|+++ +|+|+|| |
T Consensus 134 d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~g 213 (686)
T PLN02636 134 DMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGA 213 (686)
T ss_pred chhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCCe
Confidence 67777778888878888999999999999999999999999999999999999999999999998 7899999 9
Q ss_pred eeeeeeCCCC-CCEEEEEEEeC-CC-----CCCCceEEEEeecC-------CCCeeeccccccCCCCCCceeeEEEecee
Q psy1303 75 TKSWITNGYE-AKAFVCIAQAD-KS-----KKHKGITAFIIPMD-------SPGLSLGKKEDKLGIRASSTCNVILEDVK 140 (206)
Q Consensus 75 ~k~~v~~~~~-a~~~~v~a~~~-~~-----~~~~~~~~~lvp~~-------~~gv~~~~~~~~~g~~~~~~~~v~f~~v~ 140 (206)
.|+|++|+.. +|+++|+|++. ++ +++.++.+|+||.+ .|||++.+..+++|+++.+++.+.||||+
T Consensus 214 ~K~wI~na~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~FdnVr 293 (686)
T PLN02636 214 IKWWIGNAAVHGKFATVFARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSVR 293 (686)
T ss_pred EEEeecCCcccCCEEEEEEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEEEeeEE
Confidence 9999999975 99999999986 21 13568999999987 59999999999999999999999999999
Q ss_pred eCCCCccCCC----------------CccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcc------cc
Q psy1303 141 IPLDSVLGKE----------------GEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAP------IL 198 (206)
Q Consensus 141 vp~~~~l~~~----------------~~~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~------l~ 198 (206)
||.+++|+.. +.||..+...+..+|+.+++.++|++++|++++++|+++|+|||+| |.
T Consensus 294 VP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~qFg~p~~~e~~I~ 373 (686)
T PLN02636 294 IPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSLLRQQFGPPKQPEISIL 373 (686)
T ss_pred ECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCEeCCCCCCCCCccc
Confidence 9999999532 4688888899999999999999999999999999999999999999 99
Q ss_pred ccccccCC
Q psy1303 199 KLQAVQLP 206 (206)
Q Consensus 199 ~~~~iq~~ 206 (206)
+||.+|++
T Consensus 374 d~q~vQ~~ 381 (686)
T PLN02636 374 DYQSQQHK 381 (686)
T ss_pred ccHHHHHH
Confidence 99999974
No 15
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-40 Score=279.67 Aligned_cols=200 Identities=37% Similarity=0.644 Sum_probs=184.5
Q ss_pred CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCC-EEEEeeeeeeee
Q psy1303 2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESD-HWVLNGTKSWIT 80 (206)
Q Consensus 2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~-g~~l~G~k~~v~ 80 (206)
|+|+++.+..|..++...+..+++++|+++|++++++|+.++++++|||++|+|.....+++++++| +|+|||+|.|+|
T Consensus 112 ~~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs 191 (410)
T PTZ00461 112 DPGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWIT 191 (410)
T ss_pred CchHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeEC
Confidence 6777777777764566678889999999999999999999999999999999999999999999865 799999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303 81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG 160 (206)
Q Consensus 81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~ 160 (206)
++..||+++|.++.++ ++.+|+||++.||+++.+.|+.+|+++++++++.|+||+||++++|+.++.|+......
T Consensus 192 ~a~~Ad~~lv~a~~~~-----~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~~ 266 (410)
T PTZ00461 192 NGTVADVFLIYAKVDG-----KITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRN 266 (410)
T ss_pred CCccCCEEEEEEEeCC-----ceEEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHHHHHH
Confidence 9999999999998642 57899999999999999999999999999999999999999999999999999888888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
+...|+..++.++|+++++++.+++|+++|.+||+|+.++|.+|++
T Consensus 267 ~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~ 312 (410)
T PTZ00461 267 LELERVTLAAMAVGIAERSVELMTSYASERKAFGKPISNFGQIQRY 312 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCcCHHhhHHHHHH
Confidence 8999999999999999999999999999999999999999999863
No 16
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.7e-40 Score=276.19 Aligned_cols=203 Identities=28% Similarity=0.425 Sum_probs=182.8
Q ss_pred CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT 80 (206)
Q Consensus 1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~ 80 (206)
+|+|+++++.+|. ....+..+++++|+++|++++++|+.+.++++|||+.|+|...+.+++++++|||+|||+|.|+|
T Consensus 80 ~~~s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis 157 (380)
T PRK03354 80 LGAPTYVLYQLPG--GFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFIT 157 (380)
T ss_pred cCcchHHHHHhcc--cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEc
Confidence 4677777666654 34567888999999999999999999999999999999999989999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303 81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG 160 (206)
Q Consensus 81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~ 160 (206)
++.++|+++|.++.+++++...+.+|+||++.+|+++ .+|+++||++++++++.|+||+||++++++.++.|+......
T Consensus 158 ~~~~ad~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~~-~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~ 236 (380)
T PRK03354 158 SSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKV-TKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEE 236 (380)
T ss_pred CCCcCCEEEEEEEcCCCCCCCceeEEEEECCCCceEe-ccccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHHHH
Confidence 9999999999999754334456788999999999998 479999999999999999999999999999988888777777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
+...|+..++.++|+++++++.+++|+++|++||+||.++|.+|++
T Consensus 237 ~~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~ 282 (380)
T PRK03354 237 FDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEK 282 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHHhHHHHHH
Confidence 8889999999999999999999999999999999999999999874
No 17
>KOG0138|consensus
Probab=100.00 E-value=6.5e-42 Score=264.03 Aligned_cols=200 Identities=33% Similarity=0.574 Sum_probs=183.3
Q ss_pred CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCE--EEEeeeeeee
Q psy1303 2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDH--WVLNGTKSWI 79 (206)
Q Consensus 2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g--~~l~G~k~~v 79 (206)
|.+.-....+|.+++...|..||+++||++|||.+++|++++||++|||.+|||+..++|+|++++.+ |.|||.|.|+
T Consensus 129 Ds~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklNGsKtWI 208 (432)
T KOG0138|consen 129 DSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLNGSKTWI 208 (432)
T ss_pred hhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEECCeeeee
Confidence 55555667788889999999999999999999999999999999999999999999999999999876 9999999999
Q ss_pred eCCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHH
Q psy1303 80 TNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLT 159 (206)
Q Consensus 80 ~~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~ 159 (206)
+|++.||+++|+||...+ ..+.=|+|+++.+|++..+...++++|...++.+.+|+|+||+|+++... .++.--+.
T Consensus 209 ~nsp~aDl~vvwAr~~t~---n~I~GFi~~k~~~GL~apkI~gK~sLRas~tG~Ilmd~V~VPeE~~LPg~-~s~qgpf~ 284 (432)
T KOG0138|consen 209 TNSPMADLFVVWARCETD---NKIRGFILEKGMRGLSAPKIEGKFSLRASATGMILMDGVEVPEENLLPGA-SSLQGPFG 284 (432)
T ss_pred cCCcccceEEEEEecccC---CceeeEEEecCCCCCcCCCcCCeeeeeecccCceeecCCcCChhhcCCCc-cccCCchh
Confidence 999999999999998742 35556999999999999888999999999999999999999999999643 35555668
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccC
Q psy1303 160 GIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQL 205 (206)
Q Consensus 160 ~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~ 205 (206)
+++..|+.+++..+|+++.+++.+..|...|+|||+|++.+|.+|.
T Consensus 285 cLnnaR~giAWg~lGase~c~~~arqY~ldRkQFG~PLAanQL~Q~ 330 (432)
T KOG0138|consen 285 CLNNARYGIAWGALGASEFCLHTARQYTLDRKQFGRPLAANQLIQK 330 (432)
T ss_pred hhhhhhhheeehhchhHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 8999999999999999999999999999999999999999999885
No 18
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2e-40 Score=275.94 Aligned_cols=191 Identities=29% Similarity=0.467 Sum_probs=176.0
Q ss_pred hhHHHHhccCCHHHHHhhhhHH-hcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeCCCCCCEEEEEEE
Q psy1303 15 LYAGLINKFGTKKQKETYLPSF-VDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQ 93 (206)
Q Consensus 15 ~~~~~l~~~g~~~q~~~~l~~i-~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~ 93 (206)
+....|..+|+++|+++|++++ .+|+.++++++|||+.|+|...+.+++++++|||+|||+|+|+|++.+||+++|.++
T Consensus 91 ~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is~~~~Ad~~~v~a~ 170 (381)
T PRK12341 91 QCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAKEYPYMLVLAR 170 (381)
T ss_pred hhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEcCCccCCEEEEEEE
Confidence 4566788899999999999998 599988999999999999999999999999999999999999999999999999999
Q ss_pred eCCC-CCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHhhhhHHHHHHHHH
Q psy1303 94 ADKS-KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQG 172 (206)
Q Consensus 94 ~~~~-~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~~~~~~~~aa~~ 172 (206)
.+++ ++..++.+|+||++.+||++ .+|+++|+++++++.+.|+||+||++++++.++.|+......++..|+.+++++
T Consensus 171 ~~~~~~~~~~~~~~lV~~~~~gv~~-~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~ 249 (381)
T PRK12341 171 DPQPKDPKKAFTLWWVDSSKPGIKI-NPLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMYNFEMERLINAARS 249 (381)
T ss_pred cCCCCCCCCceEEEEEeCCCCceee-cccccccCCCCCceEEEECcEEecHHHcCCCCChHHHHHHHHHHhHHHHHHHHH
Confidence 7643 23357889999999999999 679999999999999999999999999999999998877778889999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 173 IGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 173 ~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
+|+++++++.+++|+++|++||+|+.++|.||++
T Consensus 250 lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~ 283 (381)
T PRK12341 250 LGFAECAFEDAARYANQRIQFGKPIGHNQLIQEK 283 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhCCCccHHHhHHHHHH
Confidence 9999999999999999999999999999999874
No 19
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=2.2e-40 Score=289.90 Aligned_cols=205 Identities=25% Similarity=0.450 Sum_probs=187.7
Q ss_pred CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEe--CCEEEEe-----e
Q psy1303 2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKE--SDHWVLN-----G 74 (206)
Q Consensus 2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~--~~g~~l~-----G 74 (206)
|++++..+.+|..++...|..+|+++|+++||+++.+|++++|+|+|||++|||+..++|+|+++ +|+|+|| |
T Consensus 146 d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g 225 (680)
T PLN02312 146 DHSLAIKLGVHFFLWGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESA 225 (680)
T ss_pred cchHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCe
Confidence 66777778888878888999999999999999999999999999999999999999999999998 4789999 7
Q ss_pred eeeeeeCC-CCCCEEEEEEEeCCCCCCCceEEEEee-c--C---CCCeeeccccccCCCCCCceeeEEEeceeeCCCCcc
Q psy1303 75 TKSWITNG-YEAKAFVCIAQADKSKKHKGITAFIIP-M--D---SPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVL 147 (206)
Q Consensus 75 ~k~~v~~~-~~a~~~~v~a~~~~~~~~~~~~~~lvp-~--~---~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l 147 (206)
.|+|++|+ ..|++++|+|++..++++.++.+|+|| + + .|||++.+..+++|+++.+++.+.||||+||.+++|
T Consensus 226 ~K~wig~a~~~A~~~vV~Arl~~~~~~~Gv~~FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlL 305 (680)
T PLN02312 226 QKYWIGGAANHATHTIVFSQLHINGKNEGVHAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLL 305 (680)
T ss_pred EEECccCCcccCCEEEEEEEECCCCCCCCeEEEEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhC
Confidence 99999998 789999999998755556789999998 2 3 799999999999999999999999999999999999
Q ss_pred CC----------------CCccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCc----c---cccccccc
Q psy1303 148 GK----------------EGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGA----P---ILKLQAVQ 204 (206)
Q Consensus 148 ~~----------------~~~~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~----~---l~~~~~iq 204 (206)
+. ++.||..+...+..+|+.+++.++|++++|++.+++|+++|+|||+ | |.+||.+|
T Consensus 306 g~~~~V~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q 385 (680)
T PLN02312 306 NSVADVSPDGKYVSAIKDPDQRFGAFLAPLTSGRVTIAVSAIYSSKVGLAIAIRYSLSRRAFSVTPNGPEVLLLDYPSHQ 385 (680)
T ss_pred CccceeCCCCceecCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCCCCCccchHhhhHHHH
Confidence 84 5678888888999999999999999999999999999999999995 4 99999999
Q ss_pred CC
Q psy1303 205 LP 206 (206)
Q Consensus 205 ~~ 206 (206)
++
T Consensus 386 ~r 387 (680)
T PLN02312 386 RR 387 (680)
T ss_pred HH
Confidence 75
No 20
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=3.4e-40 Score=276.88 Aligned_cols=201 Identities=34% Similarity=0.534 Sum_probs=183.8
Q ss_pred CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeC
Q psy1303 2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITN 81 (206)
Q Consensus 2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~ 81 (206)
|+++++.+.+|..++...|..+++++|+++|++++++|+.+++++++||+.|+|...+.+++++++|||+|||+|.|+++
T Consensus 103 ~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~gg~~lnG~K~~vs~ 182 (412)
T PLN02526 103 DASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIGN 182 (412)
T ss_pred CchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEEEEeeecC
Confidence 67777777777755666899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHhh
Q psy1303 82 GYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGI 161 (206)
Q Consensus 82 ~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~ 161 (206)
+..||+++|.++.+++ .++.+|+||++.+|+++.+.|+++|+++++++++.|+||+||++++++..+ ++......+
T Consensus 183 ~~~Ad~~lv~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp~~~~l~~~~-~~~~~~~~~ 258 (412)
T PLN02526 183 STFADVLVIFARNTTT---NQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDEDRLPGVN-SFQDTNKVL 258 (412)
T ss_pred CCccCEEEEEEEeCCC---CCeEEEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEECHHHhCCCcc-cHHHHHHHH
Confidence 9999999999997532 357889999999999999999999999999999999999999999997653 676677788
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 162 DCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 162 ~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
...|+.+++.++|+++++++.+++|+++|.+||+||++||.+|++
T Consensus 259 ~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~ 303 (412)
T PLN02526 259 AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQEK 303 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCCchhhhHHHHHH
Confidence 999999999999999999999999999999999999999999874
No 21
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=3.8e-40 Score=289.21 Aligned_cols=204 Identities=31% Similarity=0.493 Sum_probs=179.9
Q ss_pred CCcchhhhhhhhhhh-HHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEE-----EEeCC---EEEE
Q psy1303 2 CGGTSTILTVHNCLY-AGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA-----RKESD---HWVL 72 (206)
Q Consensus 2 ~~s~a~~~~~~~~~~-~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a-----~~~~~---g~~l 72 (206)
|.+++..+.+|+++. ..+|.++|++|||++|||++++|+.+.|+++|||+.|||...+++++ +++++ ||+|
T Consensus 152 ~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvL 231 (774)
T PRK13026 152 SVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRL 231 (774)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEE
Confidence 556666676776454 45899999999999999999999999999999999999998887554 35676 6999
Q ss_pred eeeeeeeeCCCCCCEEEEEEEe-CCC-----CCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCc
Q psy1303 73 NGTKSWITNGYEAKAFVCIAQA-DKS-----KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSV 146 (206)
Q Consensus 73 ~G~k~~v~~~~~a~~~~v~a~~-~~~-----~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~ 146 (206)
||+|.|+|++..||+++|.++. +++ +++.++++|+||++.|||++.+.++.+|++.. ++++.|+||+||.+++
T Consensus 232 NG~K~~IT~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fLVp~d~pGV~ig~~~~~lG~~~~-~g~v~fdDV~VP~d~l 310 (774)
T PRK13026 232 TWDKRYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPTDHPGVEIGRRHNPLGMAFM-NGTTRGKDVFIPLDWI 310 (774)
T ss_pred EEEEEeecCccccCEEEEEEEeeCccccccCCCCCceEEEEEECCCCCeEeeccccccccCcc-cceEEEeeeEccHHHh
Confidence 9999999999999999887764 332 23568999999999999999888999999864 5899999999999999
Q ss_pred cCCC---CccHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 147 LGKE---GEGFKVGLTGIDCAR-IGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 147 l~~~---~~~~~~~~~~~~~~~-~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
||.+ ++||..+...++..| +.+++.++|+++++++.+++|+++|+|||+||++||.|||+
T Consensus 311 LG~~~~~G~G~~~l~~~L~~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG~pIg~fQ~Vq~~ 374 (774)
T PRK13026 311 IGGPDYAGRGWRMLVECLSAGRGISLPALGTASGHMATRTTGAYAYVRRQFGMPIGQFEGVQEA 374 (774)
T ss_pred cCCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHH
Confidence 9975 789999999999999 89999999999999999999999999999999999999974
No 22
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=4.6e-40 Score=289.49 Aligned_cols=204 Identities=29% Similarity=0.474 Sum_probs=181.3
Q ss_pred CCcchhhhhhhhhhhH-HHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCcee-----EEEEeCC---EEEE
Q psy1303 2 CGGTSTILTVHNCLYA-GLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLT-----TARKESD---HWVL 72 (206)
Q Consensus 2 ~~s~a~~~~~~~~~~~-~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~-----~a~~~~~---g~~l 72 (206)
|++++..+.+|++++. .+|.++|+++||++|||++++|+.+.|+++|||+.|||...+.+ +++++++ ||+|
T Consensus 153 ~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vL 232 (777)
T PRK09463 153 SGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRL 232 (777)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCcccccccceeeeeeecCCcccceEE
Confidence 6677777777775553 57899999999999999999999999999999999999988764 3445666 6999
Q ss_pred eeeeeeeeCCCCCCEEEEEEEe-CCC-----CCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCc
Q psy1303 73 NGTKSWITNGYEAKAFVCIAQA-DKS-----KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSV 146 (206)
Q Consensus 73 ~G~k~~v~~~~~a~~~~v~a~~-~~~-----~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~ 146 (206)
||+|.|+|++..||+++|.++. +++ +++.++++|+||++.||+++.+.+..+|++ ..++++.|+||+||.+++
T Consensus 233 NG~K~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp~d~pGV~ig~~~~~lG~r-~~~g~v~fddV~VP~d~l 311 (777)
T PRK09463 233 TWNKRYITLAPIATVLGLAFKLYDPDGLLGDKEDLGITCALIPTDTPGVEIGRRHFPLNVP-FQNGPTRGKDVFIPLDYI 311 (777)
T ss_pred EEEEEeeCCCCccCEEEEEEEecCcccccCCCCCCceEEEEEECCCCCeEecccccccCcc-cccceEEeeeeecCHHHh
Confidence 9999999999999999999885 332 235689999999999999999999999998 568899999999999999
Q ss_pred cCCC---CccHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 147 LGKE---GEGFKVGLTGIDCAR-IGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 147 l~~~---~~~~~~~~~~~~~~~-~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
||.. +.||..+...++.+| +.+++.++|+++++++.+++|+++|+|||+||++||.|||+
T Consensus 312 LG~~~~~G~G~~~l~~~L~~gR~i~laA~avG~ar~al~~Av~YA~~R~QFG~pIg~fQaVQ~~ 375 (777)
T PRK09463 312 IGGPKMAGQGWRMLMECLSVGRGISLPSNSTGGAKLAALATGAYARIRRQFKLPIGKFEGIEEP 375 (777)
T ss_pred cccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcHHHHHH
Confidence 9974 889999999999999 89999999999999999999999999999999999999974
No 23
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=1.9e-39 Score=282.57 Aligned_cols=206 Identities=27% Similarity=0.412 Sum_probs=188.5
Q ss_pred CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeC--CEEEEe-----
Q psy1303 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKES--DHWVLN----- 73 (206)
Q Consensus 1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~--~g~~l~----- 73 (206)
.|++++..+..|..++...|..+|+++|+++|++++.+|++++|+++|||++|||...++|+|++++ ++|+||
T Consensus 94 ~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d~~t~efvLntp~~~ 173 (610)
T cd01150 94 YDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYDPLTQEFVINTPDFT 173 (610)
T ss_pred cCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEECCCCCeEEECCCCCC
Confidence 3677777788887788889999999999999999999999999999999999999999999999988 899999
Q ss_pred eeeeeeeCCC-CCCEEEEEEEeCCCCCCCceEEEEeecC-------CCCeeeccccccCCCCCCceeeEEEeceeeCCCC
Q psy1303 74 GTKSWITNGY-EAKAFVCIAQADKSKKHKGITAFIIPMD-------SPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDS 145 (206)
Q Consensus 74 G~k~~v~~~~-~a~~~~v~a~~~~~~~~~~~~~~lvp~~-------~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~ 145 (206)
|.|+|++|+. .+++++|+|++..++++.++.+|+||.+ .|||++.+.++++|+++.+++.+.||||+||.++
T Consensus 174 g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dng~l~Fd~vrVP~~n 253 (610)
T cd01150 174 ATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDNGFLQFRNVRIPREN 253 (610)
T ss_pred ceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCeEEEEEeeeEecHHH
Confidence 9999999975 4999999999864445678999999963 3999999999999999999999999999999999
Q ss_pred ccCC----------------CCccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcc-------cccccc
Q psy1303 146 VLGK----------------EGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAP-------ILKLQA 202 (206)
Q Consensus 146 ~l~~----------------~~~~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~-------l~~~~~ 202 (206)
+|+. ++.++..+...+..+|+.+++.++|.+++|++.+++|++.|+|||+| |.+||.
T Consensus 254 lL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qfg~~~~~~e~~I~~~q~ 333 (610)
T cd01150 254 LLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFGPKPSDPEVQILDYQL 333 (610)
T ss_pred hcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeecCCCCCCCcchhhccHh
Confidence 9986 56788888889999999999999999999999999999999999999 999999
Q ss_pred ccCC
Q psy1303 203 VQLP 206 (206)
Q Consensus 203 iq~~ 206 (206)
+|++
T Consensus 334 ~q~r 337 (610)
T cd01150 334 QQYR 337 (610)
T ss_pred HHHH
Confidence 9975
No 24
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=3.2e-39 Score=281.46 Aligned_cols=205 Identities=27% Similarity=0.443 Sum_probs=183.1
Q ss_pred CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEe--CCEEEEe-----e
Q psy1303 2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKE--SDHWVLN-----G 74 (206)
Q Consensus 2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~--~~g~~l~-----G 74 (206)
|++....+.+|..++...|..+|+++|+++||+++.+|++++|+|+|||++|||+..++|+|+++ +|+|+|| |
T Consensus 88 ~~~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g 167 (646)
T PTZ00460 88 CPQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEA 167 (646)
T ss_pred ccCCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCe
Confidence 44555567788877788899999999999999999999999999999999999999999999985 6789998 9
Q ss_pred eeeeeeC-CCCCCEEEEEEEeCCCCCCCceEEEEeecC-------CCCeeeccccccCCCCCCceeeEEEeceeeCCCCc
Q psy1303 75 TKSWITN-GYEAKAFVCIAQADKSKKHKGITAFIIPMD-------SPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSV 146 (206)
Q Consensus 75 ~k~~v~~-~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~-------~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~ 146 (206)
.|+|+++ +..|++++|+|++..++++.++.+|+||.. .|||++.+..+++|+++.+++.+.||||+||.+++
T Consensus 168 ~K~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nl 247 (646)
T PTZ00460 168 VKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSL 247 (646)
T ss_pred EEEccCCCCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHh
Confidence 9999998 688999999999875555678999999932 49999999999999999999999999999999999
Q ss_pred cCC------CCc----c-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCc------cccccccccCC
Q psy1303 147 LGK------EGE----G-FKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGA------PILKLQAVQLP 206 (206)
Q Consensus 147 l~~------~~~----~-~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~------~l~~~~~iq~~ 206 (206)
|+. ++. | +......+...|+.+++.++|++++|++.+++|+++|+|||+ ||.+||.+|++
T Consensus 248 Lg~~~~v~~~G~~~~~g~~~~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg~~~~~E~pI~~yQ~~Q~r 324 (646)
T PTZ00460 248 LARYIKVSEDGQVERQGNPKVSYASMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFTNDNKQENSVLEYQTQQQK 324 (646)
T ss_pred CCcccccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCcHhhhHHHHHH
Confidence 985 332 4 666777888999999999999999999999999999999997 99999999975
No 25
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=4.5e-39 Score=268.77 Aligned_cols=205 Identities=40% Similarity=0.746 Sum_probs=183.2
Q ss_pred CCcchhhhhhhhhhh---HHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCce-eEEEEeCCEEEEeeeee
Q psy1303 2 CGGTSTILTVHNCLY---AGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML-TTARKESDHWVLNGTKS 77 (206)
Q Consensus 2 ~~s~a~~~~~~~~~~---~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~-~~a~~~~~g~~l~G~k~ 77 (206)
|++.++.+.+|.... ...+.++|+++|+++|+++++.|+.+.|+++|||.+|+|+.... +++++.+++|+|||+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~ 162 (393)
T COG1960 83 DAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKI 162 (393)
T ss_pred CcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeEEE
Confidence 566666677665222 23667899999999999999999999999999999999999987 67767566699999999
Q ss_pred eeeCCCCCCEEEEEEEeCCC-CCCCceEEEEeecC-CCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHH
Q psy1303 78 WITNGYEAKAFVCIAQADKS-KKHKGITAFIIPMD-SPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFK 155 (206)
Q Consensus 78 ~v~~~~~a~~~~v~a~~~~~-~~~~~~~~~lvp~~-~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~ 155 (206)
|+|++..+|+++|+++++++ ++++++++|+||.+ .||+++.+.|...|+++++++++.|+||+||.+++||..+.||.
T Consensus 163 ~is~~~~ad~~~v~Ar~~~~~~~~~gis~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~ 242 (393)
T COG1960 163 WISNAPVADWLLVLARTDPAPGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFK 242 (393)
T ss_pred EEcCCCCCCEEEEEEEcCCcccccCceEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCCchHH
Confidence 99999999999999998754 56778999999999 59999977766549999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 156 VGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 156 ~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
.+...++..|+..++.++|+++++++.+++|+++|++||+|+.++|.+|++
T Consensus 243 ~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~~i~~~~~vq~~ 293 (393)
T COG1960 243 IAMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGRPIADFQLVQFK 293 (393)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCchhhcHHHHHH
Confidence 999999999999999999999999999999999999999999999999864
No 26
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1e-38 Score=266.67 Aligned_cols=191 Identities=24% Similarity=0.496 Sum_probs=174.6
Q ss_pred hHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCC-CCCCccCceeEEEEeCCEEEEeeeeeeeeCCCC--CCEEEEEE
Q psy1303 16 YAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPG-SGSDAANMLTTARKESDHWVLNGTKSWITNGYE--AKAFVCIA 92 (206)
Q Consensus 16 ~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~-~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~--a~~~~v~a 92 (206)
...+|..+++++|+++|++++++|+.++++++|||+ .|+|...+.+++++++|||+|||+|.|+|++.+ +|+++|.+
T Consensus 100 ~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~~~a~~~~v~a 179 (394)
T cd01155 100 NMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKWWSSGAGDPRCKIAIVMG 179 (394)
T ss_pred cHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEEEEcCCCCCCCCEEEEEE
Confidence 345788999999999999999999999999999997 678988899999999999999999999999965 78999999
Q ss_pred EeCCC--CCCCceEEEEeecCCCCeeeccccccCCCCC--CceeeEEEeceeeCCCCccCCCCccHHHHHHhhhhHHHHH
Q psy1303 93 QADKS--KKHKGITAFIIPMDSPGLSLGKKEDKLGIRA--SSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGM 168 (206)
Q Consensus 93 ~~~~~--~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~--~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (206)
+.+++ ++..++.+|+||++.||+++.++|+++|+++ ++++++.|+||+||++++++.++.|+......+...|+..
T Consensus 180 ~~~~~~~~~~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~ 259 (394)
T cd01155 180 RTDPDGAPRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGEGRGFEIAQGRLGPGRIHH 259 (394)
T ss_pred EeCCCcCCCCCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCCChHHHHHHHHhhhhHHHH
Confidence 87543 2335788999999999999988999999997 6789999999999999999998889988888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 169 ASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 169 aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
++.++|+++++++.+++|+++|.+||+|+.++|.+|++
T Consensus 260 ~a~~lG~a~~al~~~~~~~~~R~~fg~~i~~~q~vq~~ 297 (394)
T cd01155 260 CMRLIGAAERALELMCQRAVSREAFGKKLAQHGVVAHW 297 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccCCCcHhhhHHHHHH
Confidence 99999999999999999999999999999999999874
No 27
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=9e-39 Score=268.59 Aligned_cols=197 Identities=27% Similarity=0.429 Sum_probs=179.5
Q ss_pred cchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCC----eeeEEEeeCCCCCCCccCceeEEEEe-CCEEEEeeeeee
Q psy1303 4 GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGT----NVGCFGISEPGSGSDAANMLTTARKE-SDHWVLNGTKSW 78 (206)
Q Consensus 4 s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~----~~~~~a~te~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~ 78 (206)
+.+..+.+|. .++..|..+|+++|+ +||+++++|+ ++.++++|||+.|||+..+.|+|+++ +|+|+|||+|+|
T Consensus 108 ~~~~p~~~~~-~~~~~l~~~g~~~~~-~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f 185 (418)
T cd01154 108 GLLCPLTMTD-AAVYALRKYGPEELK-QYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWF 185 (418)
T ss_pred hccCcHHHHH-HHHHHHHHhCcHHHH-HHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEE
Confidence 4444445777 688899999988864 6999999997 89999999999999999999999999 899999999999
Q ss_pred eeCCCCCCEEEEEEEeCCC-CCCCceEEEEeecCCC-----CeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCc
Q psy1303 79 ITNGYEAKAFVCIAQADKS-KKHKGITAFIIPMDSP-----GLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGE 152 (206)
Q Consensus 79 v~~~~~a~~~~v~a~~~~~-~~~~~~~~~lvp~~~~-----gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~ 152 (206)
+|++ .||+++|+|+++++ ++..++++|+||++.| |+++.+.|+++|+++++++++.|+|| .+++||.+++
T Consensus 186 ~s~a-~Ad~~lv~Art~~~~~~~~gls~flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv---~~~~lG~~g~ 261 (418)
T cd01154 186 ASAP-LADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDA---EAYLIGDEGK 261 (418)
T ss_pred ecCc-ccCEEEEEEECCCCCCCCCcEEEEEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCc---CccccCCCCc
Confidence 9999 99999999998743 4567899999999875 99999999999999999999999998 4889999999
Q ss_pred cHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 153 GFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 153 ~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
|+..+...++..|+..++.++|+++++++.+++|+++|++||+|+.++|.+|++
T Consensus 262 G~~~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~l~~~~~v~~~ 315 (418)
T cd01154 262 GIYYILEMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGKPLIDHPLMRRD 315 (418)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCchhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999864
No 28
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=1.6e-38 Score=259.18 Aligned_cols=192 Identities=44% Similarity=0.825 Sum_probs=179.4
Q ss_pred hhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeCCCCCCEEEEEEEe
Q psy1303 15 LYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQA 94 (206)
Q Consensus 15 ~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~ 94 (206)
+++..|..+|+++|+++|++++.+|+.+++++++||++|+|...+.++++++++||+|||+|+|++++..+|+++|.++.
T Consensus 43 ~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~ 122 (327)
T cd00567 43 LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIVLART 122 (327)
T ss_pred hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEEEEEe
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC-CCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHhhhhHHHHHHHHHH
Q psy1303 95 DKS-KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGI 173 (206)
Q Consensus 95 ~~~-~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~~~~~~~~aa~~~ 173 (206)
+++ ++..++.+|+||++.||+++.+.|+.+|+++++++.+.|+||+||++++++..+.++......+...++..++.++
T Consensus 123 ~~~~~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~aa~~~ 202 (327)
T cd00567 123 DEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLAAVAL 202 (327)
T ss_pred CCCCCCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 643 2456788999999999999999999999999999999999999999999999888888888889999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 174 GIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 174 G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
|+++++++.+++|+++|.+||+|+.++|.+|++
T Consensus 203 G~a~~al~~~~~~~~~r~~~g~~~~~~~~vq~~ 235 (327)
T cd00567 203 GAARAALDEAVEYAKQRKQFGKPLAEFQAVQFK 235 (327)
T ss_pred HHHHHHHHHHHHHHHhccccCCccccchHHHHH
Confidence 999999999999999999999999999999864
No 29
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1.2e-37 Score=261.30 Aligned_cols=198 Identities=28% Similarity=0.511 Sum_probs=175.1
Q ss_pred CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEe-CCEEEEeeeeeee
Q psy1303 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKE-SDHWVLNGTKSWI 79 (206)
Q Consensus 1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~v 79 (206)
+|+|+++.+.+|. +...|..+++++|+++|++++++|+.++++++|||++|+|...+.++++++ +|+|+|||+|.|+
T Consensus 79 ~~~s~~~~~~~~~--~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~i 156 (407)
T cd01153 79 GDAPLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFI 156 (407)
T ss_pred hhHHHHHHHHHhH--HHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEE
Confidence 4778888776654 446678889999999999999999999999999999999999999999998 5689999999999
Q ss_pred eCCCCC----CEEEEEEEeCC-CCCCCceEEEEeecCC-----CCeeeccccccCCCCCCceeeEEEeceeeCCCCccCC
Q psy1303 80 TNGYEA----KAFVCIAQADK-SKKHKGITAFIIPMDS-----PGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGK 149 (206)
Q Consensus 80 ~~~~~a----~~~~v~a~~~~-~~~~~~~~~~lvp~~~-----~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~ 149 (206)
|++.++ ++++|.++.++ .++..++.+|+||++. ||+++.+.|+++|+++++++++.|+||+|| +++.
T Consensus 157 s~~~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~ 233 (407)
T cd01153 157 SAGEHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGE 233 (407)
T ss_pred eCCCcccccccEEEEEEeCCCCCCCCCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCC
Confidence 999886 57888898653 2234578899999987 899999999999999999999999999999 8888
Q ss_pred CCccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccc
Q psy1303 150 EGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAV 203 (206)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~i 203 (206)
++.|+......+...|+.++++++|+++++++.+++|+++|.+||+|+.++|.+
T Consensus 234 ~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~~~~ 287 (407)
T cd01153 234 EGMGLAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAV 287 (407)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCcCcccccc
Confidence 888998888889999999999999999999999999999999999996555543
No 30
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=1.3e-37 Score=260.06 Aligned_cols=188 Identities=29% Similarity=0.555 Sum_probs=168.6
Q ss_pred hhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeCCCCCCEEEEEEEe
Q psy1303 15 LYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQA 94 (206)
Q Consensus 15 ~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~ 94 (206)
++...|..+++++|+++||+++++|+.+.++++|||+.|||...+.+++++++|+|+|||+|.|++++..||+++|.+++
T Consensus 95 ~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~vt~a~~Ad~~lv~a~~ 174 (395)
T TIGR03204 95 MVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQHADWIFCLCRT 174 (395)
T ss_pred hhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEeecCCccCCeEEEEEEe
Confidence 34457888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC-CCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHhhhhHHHHHHHHHH
Q psy1303 95 DKS-KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGI 173 (206)
Q Consensus 95 ~~~-~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~~~~~~~~aa~~~ 173 (206)
+++ ++..++.+|+||.+.||+++.+.....| +++++++.|+||+||++++++..+.|+......++..|+..++ +
T Consensus 175 ~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~g~aa--~ 250 (395)
T TIGR03204 175 DPTAKKQMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKGWDYAKFLLGNERTGIAR--V 250 (395)
T ss_pred CCCCCCCCCeEEEEEeCCCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCCCCchHHHHHHHHHHHHHHHHH--H
Confidence 532 2345788999999999999965555544 6788999999999999999998889999888889999988876 8
Q ss_pred HHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 174 GIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 174 G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
|+++++++.+++|+++|++||+||++||.|||+
T Consensus 251 g~a~~~l~~a~~ya~~R~~fg~~i~~~q~vq~~ 283 (395)
T TIGR03204 251 GVSKERIRRIKDLAAKVESGGKPVIEDAKFREK 283 (395)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCccccCHHHHHH
Confidence 999999999999999999999999999999974
No 31
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=6e-37 Score=261.60 Aligned_cols=183 Identities=25% Similarity=0.371 Sum_probs=168.5
Q ss_pred hhHHHHhccCCHHHHHhhhhHHhcCC-------------eeeEEEeeCCCCCCCccCceeEEEEe-CCEEEEeeeeeeee
Q psy1303 15 LYAGLINKFGTKKQKETYLPSFVDGT-------------NVGCFGISEPGSGSDAANMLTTARKE-SDHWVLNGTKSWIT 80 (206)
Q Consensus 15 ~~~~~l~~~g~~~q~~~~l~~i~~g~-------------~~~~~a~te~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~v~ 80 (206)
.++..+.++++++|+++|++++++|+ ++.++++|||++|||+..+.|+|+++ +|+|+|||+|+|+|
T Consensus 139 ~~a~~~l~~~~~e~~~~~lp~l~sg~~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS 218 (538)
T PRK11561 139 FAATPLLLQMLPAPFQDWLTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS 218 (538)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhCCCcccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE
Confidence 45566677789999999999999987 45689999999999999999999994 67899999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCC-----CeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHH
Q psy1303 81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSP-----GLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFK 155 (206)
Q Consensus 81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~-----gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~ 155 (206)
+..+|+++|+|+++ +++++|+||++.| |+++.+.++++|+++++++++.|+|+ .+++||.+++|+.
T Consensus 219 -a~~AD~~lVlArt~-----~Gls~FlVp~~~p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv---~~~llG~~g~G~~ 289 (538)
T PRK11561 219 -VPQSDAHLVLAQAK-----GGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDA---IGWLLGEEGEGIR 289 (538)
T ss_pred -chhhCEEEEEEEEC-----CceEEEEEECCCCCCCCCceEEecccccccCCCCceeEEEECCH---HHHHCCCCCchHH
Confidence 58899999999985 3799999999988 79998899999999999999999998 4889999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 156 VGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 156 ~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
.+..+++..|+..++.++|+++++++.+++|+++|++||+||+++|.+|++
T Consensus 290 ~i~~~l~~~Rl~~a~~a~G~a~~Al~~A~~yA~~R~~FG~~L~~~q~vq~~ 340 (538)
T PRK11561 290 LILKMGGMTRFDCALGSHGLMRRAFSVAIYHAHQRQVFGKPLIEQPLMRQV 340 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCccccCHHHHHH
Confidence 999999999999999999999999999999999999999999999999863
No 32
>KOG0137|consensus
Probab=100.00 E-value=8.4e-38 Score=259.11 Aligned_cols=204 Identities=37% Similarity=0.612 Sum_probs=191.2
Q ss_pred CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEE--eCCEEEEeeeeeee
Q psy1303 2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARK--ESDHWVLNGTKSWI 79 (206)
Q Consensus 2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~--~~~g~~l~G~k~~v 79 (206)
|.++...+..|..+....|..+|+++|+++|||.+++|+.+++|+++||..|||.....++++. +++.|+|||.|.|+
T Consensus 153 D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwi 232 (634)
T KOG0137|consen 153 DLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLNGSKIWI 232 (634)
T ss_pred cccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCCccceEEEecCCCCcccccceeeeeecCCCCeEEEcCeeEEE
Confidence 6778888888888888899999999999999999999999999999999999999999998886 45679999999999
Q ss_pred eCCCCCCEEEEEEEeCCC--C--CCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHH
Q psy1303 80 TNGYEAKAFVCIAQADKS--K--KHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFK 155 (206)
Q Consensus 80 ~~~~~a~~~~v~a~~~~~--~--~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~ 155 (206)
+|+..||+++|+|+++.+ + ..+++++|+|+++..|++-.++..++|.+++.++.++|+++.+|.+++||.+++|++
T Consensus 233 sn~g~Adif~VfAqt~~~~~~g~~k~k~T~Flver~~~Gvt~G~~e~k~GiKgsnt~~v~f~~~ki~~envlG~~G~G~k 312 (634)
T KOG0137|consen 233 SNGGLADIFTVFAQTEVDPADGEVKRKITAFLVERDFGGVTNGPPEKKMGIKGSNTAEVHFEGVKIPIENVLGKPGDGFK 312 (634)
T ss_pred ecCccceeeeeeeccccCCCCccccCceEEEEEeccccCccCCCchhhhcccccceeeeeeccccccHHHhcCCCCcchH
Confidence 999999999999998722 1 357889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccC
Q psy1303 156 VGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQL 205 (206)
Q Consensus 156 ~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~ 205 (206)
+...+++.+|+..++..+|.++++++++.+|+.+|+|||.+|.+|-.+|.
T Consensus 313 va~nilnsgR~~~aaa~~G~mkr~I~~~~d~~~~rtQ~g~~L~~~~l~q~ 362 (634)
T KOG0137|consen 313 VAMNILNSGRFGMAAALLGLMKRIIEEAADYATNRTQFGKKLHDFGLIQE 362 (634)
T ss_pred HHHHHHccCCcchhHHHHHHHHHHHHHHHHHhhcceecCcchhhhhhHHH
Confidence 99999999999999999999999999999999999999999999988774
No 33
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=5.9e-37 Score=275.76 Aligned_cols=190 Identities=24% Similarity=0.461 Sum_probs=174.2
Q ss_pred HHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCC-CCCCccCceeEEEEeCCEEEEeeeeeeeeCC--CCCCEEEEEEE
Q psy1303 17 AGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPG-SGSDAANMLTTARKESDHWVLNGTKSWITNG--YEAKAFVCIAQ 93 (206)
Q Consensus 17 ~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~-~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~--~~a~~~~v~a~ 93 (206)
...|..+|+++||++||+++++|+.++++++|||+ .|+|...+.|++++++|||+|||+|.|++++ ..+|+++|.++
T Consensus 526 ~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar 605 (822)
T PLN02876 526 MEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGK 605 (822)
T ss_pred HHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEe
Confidence 35788899999999999999999999999999997 6899999999999999999999999999998 46999999999
Q ss_pred eCCC-CCCCceEEEEeecCCCCeeeccccccCCCCCC--ceeeEEEeceeeCCCCccCCCCccHHHHHHhhhhHHHHHHH
Q psy1303 94 ADKS-KKHKGITAFIIPMDSPGLSLGKKEDKLGIRAS--STCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMAS 170 (206)
Q Consensus 94 ~~~~-~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~--~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~~~~~~~~aa 170 (206)
++++ ++..++++|+||.+.||+++.++|+++|++++ +++++.|+||+||++++++..+.|+..+...+...|+..++
T Consensus 606 ~~~~~~~~~~~s~flV~~~~pGv~i~~~~~~~G~r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa 685 (822)
T PLN02876 606 TDFNAPKHKQQSMILVDIQTPGVQIKRPLLVFGFDDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCM 685 (822)
T ss_pred cCCCCCCCCcceEEEEeCCCCCceeecccceeccCCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhhHHHHHH
Confidence 7543 23456789999999999999889999999974 58899999999999999998888998888889999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 171 QGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 171 ~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
.++|++++|++.+++|+++|++||+||.++|.+|++
T Consensus 686 ~~vG~a~~ale~a~~ya~~R~~fg~~i~~~q~vq~~ 721 (822)
T PLN02876 686 RLIGAAERGMQLMVQRALSRKAFGKLIAQHGSFLSD 721 (822)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCchhhCHHHHHH
Confidence 999999999999999999999999999999999874
No 34
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=2e-36 Score=251.52 Aligned_cols=198 Identities=22% Similarity=0.281 Sum_probs=171.9
Q ss_pred CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT 80 (206)
Q Consensus 1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~ 80 (206)
+|+++++++.+|. .+..+|..+|+++|+++|++++.+|++++ .+++||+.++ +....+++.+++|||+|||+|.|+|
T Consensus 65 ~~~s~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~g~~~~-~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is 141 (377)
T cd01163 65 ADSNIAQALRAHF-GFVEALLLAGPEQFRKRWFGRVLNGWIFG-NAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYST 141 (377)
T ss_pred cCcHHHHHHHHHH-HHHHHHHhcCcHHHHHHHHHHHhCCCeEE-EeecCCCCCC-CCCceEEEEecCCEEEEeceEEeec
Confidence 4889999999988 56678889999999999999999999664 5899998765 5556677777889999999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHHh
Q psy1303 81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG 160 (206)
Q Consensus 81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~ 160 (206)
++.+||+++|.++.++ .+..+|+||.+.||+++.+.|+.+||++++++++.|+||+||++++++.++.++. ....
T Consensus 142 ~a~~Ad~~~v~a~~~~----~~~~~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~-~~~~ 216 (377)
T cd01163 142 GALFSDWVTVSALDEE----GKLVFAAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDR-GTLL 216 (377)
T ss_pred CCccceEEEEEEEcCC----CcEEEEEEeCCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCCCccccc-cccc
Confidence 9999999999998643 3567899999999999988999999999999999999999999999998887764 2234
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-ccCc----cccccccccCC
Q psy1303 161 IDCARIGMASQGIGIAQAAFDCAMEYAGKRI-AFGA----PILKLQAVQLP 206 (206)
Q Consensus 161 ~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~-~~g~----~l~~~~~iq~~ 206 (206)
+..+++.+++.++|+++++++.+++|+++|+ +||+ ++.++|.+|++
T Consensus 217 ~~~~~l~~aa~~lG~a~~al~~~~~~~~~R~~~~g~~~~~~~~~~~~v~~~ 267 (377)
T cd01163 217 TAIYQLVLAAVLAGIARAALDDAVAYVRSRTRPWIHSGAESARDDPYVQQV 267 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCccccccCcHHHHH
Confidence 5567899999999999999999999999995 7876 57889988864
No 35
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=3e-36 Score=262.15 Aligned_cols=201 Identities=28% Similarity=0.449 Sum_probs=175.3
Q ss_pred CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCC-EEEEeeeeeeee
Q psy1303 2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESD-HWVLNGTKSWIT 80 (206)
Q Consensus 2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~-g~~l~G~k~~v~ 80 (206)
|+++++.+..+. .+...|..+|+++||++||+++++|++++++++|||+.|||+..+.|+|++++| +|+|||+|.|||
T Consensus 143 ~~~~~~~~~l~~-ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G~K~fIt 221 (622)
T PTZ00456 143 NWGFSMYPGLSI-GAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFIS 221 (622)
T ss_pred chHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEEEeeEEEEec
Confidence 344443333443 456789999999999999999999999999999999999999999999999987 499999999999
Q ss_pred CCCCC----CEEEEEEEeCCC-CCCCceEEEEeecCC----------CCeeeccccccCCCCCCceeeEEEeceeeCCCC
Q psy1303 81 NGYEA----KAFVCIAQADKS-KKHKGITAFIIPMDS----------PGLSLGKKEDKLGIRASSTCNVILEDVKIPLDS 145 (206)
Q Consensus 81 ~~~~a----~~~~v~a~~~~~-~~~~~~~~~lvp~~~----------~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~ 145 (206)
++.++ ++++|+|+++++ ++..++++|+||++. +|+++.+..+++|+++++++.+.|+| +.++
T Consensus 222 ~g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~fd~---~~~~ 298 (622)
T PTZ00456 222 AGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLSFEN---SVGY 298 (622)
T ss_pred CCchhhccCcEEEEEEEecCCCCCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEEEeeC---hhHh
Confidence 99874 678999998743 456789999999865 36777778899999999999999999 3689
Q ss_pred ccCCCCccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc------------CccccccccccCC
Q psy1303 146 VLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAF------------GAPILKLQAVQLP 206 (206)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~------------g~~l~~~~~iq~~ 206 (206)
+||.++.|+..++.+++..|+.+++.++|+++++++.+++|+++|+|| ++||.++|.||++
T Consensus 299 llG~~~~Gl~~~~~~mn~aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~ 371 (622)
T PTZ00456 299 LIGEPNAGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIICHANVRQN 371 (622)
T ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCccccCHHHHHH
Confidence 999999999999999999999999999999999999999999999984 6788999988863
No 36
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=5.6e-36 Score=261.60 Aligned_cols=196 Identities=23% Similarity=0.347 Sum_probs=172.1
Q ss_pred hhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEe--CCEEEEe-----eeeeeee
Q psy1303 8 ILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKE--SDHWVLN-----GTKSWIT 80 (206)
Q Consensus 8 ~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~--~~g~~l~-----G~k~~v~ 80 (206)
.+.+|.+++...|..+|+++|+++|++++.+|++++|+++|||++|||+..++|+|+++ +|+|+|| |.|+|++
T Consensus 98 ~~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig 177 (664)
T PLN02443 98 YTDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPG 177 (664)
T ss_pred eeeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeec
Confidence 45567767778899999999999999999999999999999999999999999999988 6789998 9999999
Q ss_pred CC-CCCCEEEEEEEeCCCCCCCceEEEEeecC-------CCCeeeccccccCC---CCCCceeeEEEeceeeCCCCccCC
Q psy1303 81 NG-YEAKAFVCIAQADKSKKHKGITAFIIPMD-------SPGLSLGKKEDKLG---IRASSTCNVILEDVKIPLDSVLGK 149 (206)
Q Consensus 81 ~~-~~a~~~~v~a~~~~~~~~~~~~~~lvp~~-------~~gv~~~~~~~~~g---~~~~~~~~v~f~~v~vp~~~~l~~ 149 (206)
++ ..|++++|+|++..++++.++.+|+||.+ .|||++.+.++++| +++.+++.+.||||+||.+++|+.
T Consensus 178 ~~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~ 257 (664)
T PLN02443 178 GLGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMR 257 (664)
T ss_pred CCcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCc
Confidence 97 68999999999865555678999999975 79999999999999 556889999999999999999985
Q ss_pred CC------ccH------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccc--ccccc
Q psy1303 150 EG------EGF------KVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPIL--KLQAV 203 (206)
Q Consensus 150 ~~------~~~------~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~--~~~~i 203 (206)
.+ ..+ ......+...|+.+++.++|.+++|++.+++|++.|+|||+|++ ++|.|
T Consensus 258 ~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~~~~e~qii 325 (664)
T PLN02443 258 LSKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQDGGPETQVI 325 (664)
T ss_pred ccccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCCCccchhhh
Confidence 32 222 23345677889999999999999999999999999999999987 77776
No 37
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1e-35 Score=247.60 Aligned_cols=199 Identities=28% Similarity=0.478 Sum_probs=169.8
Q ss_pred CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT 80 (206)
Q Consensus 1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~ 80 (206)
+|+++++.+..|. .+...|..+++++|+++||+++++|+.+.++++|||+.|+|...+.++++++++||+|||+|.|+|
T Consensus 78 ~~~~~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it 156 (380)
T cd01152 78 AGAPVPFNQIGID-LAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTS 156 (380)
T ss_pred cCCCcccchhhHH-HHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEc
Confidence 3677777633333 455678889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCC-CCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCccHHHHHH
Q psy1303 81 NGYEAKAFVCIAQADKS-KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLT 159 (206)
Q Consensus 81 ~~~~a~~~~v~a~~~~~-~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~~~~~~~ 159 (206)
++.++|+++|.++.+++ ++..++.+|+||++.||+++.+.|+.+| +++++.+.|+||+||.+++++.+++++..+..
T Consensus 157 ~~~~ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~ 234 (380)
T cd01152 157 GAHYADWAWLLVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMT 234 (380)
T ss_pred CccccCEEEEEEEeCCCccCcCCeEEEEEeCCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCchHHHHHH
Confidence 99999999999997643 2345788999999999999988898887 56789999999999999999999899988777
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 160 GIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 160 ~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
.+...|+..++.. ..+++.+++|+++|.+||+||.++|.||++
T Consensus 235 ~l~~~r~~~~~~~----~~~~~~a~~~a~~r~~~g~~l~~~~~vq~~ 277 (380)
T cd01152 235 TLNFERVSIGGSA----ATFFELLLARLLLLTRDGRPLIDDPLVRQR 277 (380)
T ss_pred HHHhcccccchhh----hHHHHHHHHHHHHHHhcCCCcccCHHHHHH
Confidence 7777777765554 444556678888889999999999999874
No 38
>KOG1469|consensus
Probab=100.00 E-value=5.4e-35 Score=222.82 Aligned_cols=187 Identities=27% Similarity=0.569 Sum_probs=173.5
Q ss_pred HHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCC-CCCCccCceeEEEEeCCEEEEeeeeeeeeCCCC--CCEEEEEEE
Q psy1303 17 AGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPG-SGSDAANMLTTARKESDHWVLNGTKSWITNGYE--AKAFVCIAQ 93 (206)
Q Consensus 17 ~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~-~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~--a~~~~v~a~ 93 (206)
.+.|.+||++||+.+||.++.+|++..||++|||+ .+||+.++++..++++|.|++||+|+|+||+.+ +...+++.+
T Consensus 89 MEvl~rYGseeQks~WL~PLLeG~irScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGk 168 (392)
T KOG1469|consen 89 MEVLHRYGSEEQKSQWLIPLLEGNIRSCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGK 168 (392)
T ss_pred eeehhhhCCHHHHhhHhHHHhcCCceeeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecc
Confidence 35789999999999999999999999999999999 789999999999999999999999999999865 667888899
Q ss_pred eCCC--CCCCceEEEEeecCCCCeeeccccccCCCCCCc--eeeEEEeceeeCCCCccCCCCccHHHHHHhhhhHHHHHH
Q psy1303 94 ADKS--KKHKGITAFIIPMDSPGLSLGKKEDKLGIRASS--TCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMA 169 (206)
Q Consensus 94 ~~~~--~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~--~~~v~f~~v~vp~~~~l~~~~~~~~~~~~~~~~~~~~~a 169 (206)
+++. +.+...++.+||+++|||++.++...+|+...+ ..+++|+||+||..+++-.++.||++.+..+..+|+.-|
T Consensus 169 t~~~~~~rhkQqSmiLVpM~TpGvkiiRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHc 248 (392)
T KOG1469|consen 169 TDNTSASRHKQQSMILVPMNTPGVKIIRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHC 248 (392)
T ss_pred cCCCccchhhcccEEEEecCCCCeeEeeeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccccCCcHHHHH
Confidence 8753 467888999999999999999999999998775 678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCccccccccc
Q psy1303 170 SQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAV 203 (206)
Q Consensus 170 a~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~i 203 (206)
+-.+|.++++++...+.+.+|..||++|.++..+
T Consensus 249 MRliG~aERal~lm~~R~~sRiaFgk~l~q~~s~ 282 (392)
T KOG1469|consen 249 MRLIGLAERALQLMKERALSRIAFGKKLVQHGSV 282 (392)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcchhhhcchH
Confidence 9999999999999999999999999999887654
No 39
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=99.97 E-value=2.1e-31 Score=220.92 Aligned_cols=190 Identities=18% Similarity=0.237 Sum_probs=154.5
Q ss_pred CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeee
Q psy1303 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWIT 80 (206)
Q Consensus 1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~ 80 (206)
+|+|+++++..+. .....+..+++++|++.|++.. ++...++ ..+.+++++++|||+|||+|.|+|
T Consensus 65 ~~~s~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~------------~~~~t~A~~~~~gy~lnG~K~~it 130 (370)
T cd01159 65 ACGSAAWVASIVA-THSRMLAAFPPEAQEEVWGDGP-DTLLAGS------------YAPGGRAERVDGGYRVSGTWPFAS 130 (370)
T ss_pred hCchHHHHHHHHH-HHHHHHHhCCHHHHHHHhCCCC-CceEEee------------ecCCceeEEeCCeEEEeccccCcc
Confidence 4888888877766 6667788889999998887742 1111111 124568889999999999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCC------ccH
Q psy1303 81 NGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEG------EGF 154 (206)
Q Consensus 81 ~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~------~~~ 154 (206)
++.++|+++|.++++++++..++++|+||++ ||++.+.|+.+||++++++.+.|+||+||++++|+..+ .++
T Consensus 131 ~~~~ad~~~v~a~~~~~~~~~~~~~~lV~~~--Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~ 208 (370)
T cd01159 131 GCDHADWILVGAIVEDDDGGPLPRAFVVPRA--EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGG 208 (370)
T ss_pred CCCcCceeEeeeECCCCCCCCcceEEEEEhH--HCEEecccccccccccCCCcEEEcceEcCccceecccccccCCCCCC
Confidence 9999999999999754435567899999987 99999999999999999999999999999999997542 231
Q ss_pred H---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc---CccccccccccCC
Q psy1303 155 K---VGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAF---GAPILKLQAVQLP 206 (206)
Q Consensus 155 ~---~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~---g~~l~~~~~iq~~ 206 (206)
. .....+..+++.++++++|+++++++.+++|+++|.+| |+|++++|.+|++
T Consensus 209 ~~~~~~~~~~~~~~~~~aa~~lG~a~~~l~~~~~~~~~R~~~~~~g~~i~~~~~v~~~ 266 (370)
T cd01159 209 STPVYRMPLRQVFPLSFAAVSLGAAEGALAEFLELAGKRVRQYGAAVKMAEAPITQLR 266 (370)
T ss_pred CCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccCCCccccccCHHHHHH
Confidence 1 12234567889999999999999999999999999987 7899999999863
No 40
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=99.97 E-value=3.8e-30 Score=218.71 Aligned_cols=171 Identities=25% Similarity=0.337 Sum_probs=148.1
Q ss_pred CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEe-CCEEEEeeeeeeee
Q psy1303 2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKE-SDHWVLNGTKSWIT 80 (206)
Q Consensus 2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~-~~g~~l~G~k~~v~ 80 (206)
|++....+..|..++...|..+|+++||++|||++++|+.+++++++| +.|||+..+.|+++++ +|+|+|||+|.|+
T Consensus 95 ~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~i~A~AltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t- 172 (520)
T PTZ00457 95 CDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMGWATEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE- 172 (520)
T ss_pred CchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcEEEEEeCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-
Confidence 445555455665456678888999999999999999999999999988 8999999999999986 5579999999966
Q ss_pred CCCCCCEEEEEEEeCC----CCC---CCceEEEEeecCCCCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCCCcc
Q psy1303 81 NGYEAKAFVCIAQADK----SKK---HKGITAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEG 153 (206)
Q Consensus 81 ~~~~a~~~~v~a~~~~----~~~---~~~~~~~lvp~~~~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~~~~ 153 (206)
++..||+++|+|++++ +.+ .+++++|+||++.||+++.. +++.|||| |.+++||.+++|
T Consensus 173 ~g~~Ad~~lV~Art~~~~~~~~g~~~~~git~FlV~~dapGVtv~~------------~eV~FddV--P~~~vLG~~g~G 238 (520)
T PTZ00457 173 FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAKDAKGVSVNG------------DSVVFENT--PAADVVGVVGEG 238 (520)
T ss_pred cCchhcEEEEEeecCCcccccccccCcCceEEEEEECCCCceEEec------------CEEEECCC--CHHHhCCCCCch
Confidence 8999999999999752 111 24789999999999999942 69999997 999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1303 154 FKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAG 188 (206)
Q Consensus 154 ~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~ 188 (206)
|..+...++..|+.+++.++|+++++++.+++|++
T Consensus 239 ~~~a~~~L~~~Rl~~aA~~vGia~~ale~av~ya~ 273 (520)
T PTZ00457 239 FKDAMITLFTEQYLYAASLLGIMKRVVQELRGSNA 273 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988999999999999999999999999999986
No 41
>KOG0135|consensus
Probab=99.94 E-value=2e-26 Score=190.44 Aligned_cols=205 Identities=29% Similarity=0.529 Sum_probs=181.8
Q ss_pred CCCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEe--CCEEEEe-----
Q psy1303 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKE--SDHWVLN----- 73 (206)
Q Consensus 1 ~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~--~~g~~l~----- 73 (206)
.|.|++.=+..|..++...+..+|++.-++ |+..+-.-++++|||+||.++|||...++|+|+.+ .+.|++|
T Consensus 117 yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev~gcfamTEl~HGSNt~~I~TtatyDP~t~EfVinTP~~~ 195 (661)
T KOG0135|consen 117 YDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEVKGCFAMTELGHGSNTKGIQTTATYDPTTEEFVINTPDFS 195 (661)
T ss_pred cCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhcceeeeeEEEeeecCCccccceeeeeeecCCCCeeEecCCcHH
Confidence 488999999999999999999999988666 99999999999999999999999999999999988 6789999
Q ss_pred eeeeeeeC-CCCCCEEEEEEEeCCCCCCCceEEEEeecCC-------CCeeeccccccCCCCCCceeeEEEeceeeCCCC
Q psy1303 74 GTKSWITN-GYEAKAFVCIAQADKSKKHKGITAFIIPMDS-------PGLSLGKKEDKLGIRASSTCNVILEDVKIPLDS 145 (206)
Q Consensus 74 G~k~~v~~-~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~-------~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~ 145 (206)
..|+|+.| +.+|.+.+|+|+..-.+.+.|+..|+||... |||.+.+.-.+.|+.|.+++.+.|+|++||.++
T Consensus 196 A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRdpkT~~t~PgV~igD~G~K~GlnGVDNG~l~F~nvRIPRen 275 (661)
T KOG0135|consen 196 AIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRDPKTLQTLPGVRIGDCGHKIGLNGVDNGFLWFDNVRIPREN 275 (661)
T ss_pred HHHHHhccccccceEEEEEEEeeecCccCceeeEEEEeecccccCCCCCceecccccccccccccCceEEEecccCchHH
Confidence 46999999 5679999999998744677899999998643 799999999999999999999999999999999
Q ss_pred ccCCC----------------CccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCc-------ccccccc
Q psy1303 146 VLGKE----------------GEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGA-------PILKLQA 202 (206)
Q Consensus 146 ~l~~~----------------~~~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~-------~l~~~~~ 202 (206)
++-.. ++.|-+....+..+|+.++...+|.++-++.+|++|...|+|||. ||.++|.
T Consensus 276 LLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tIAIRYS~sRRQFGP~~~geEv~iLeYp~ 355 (661)
T KOG0135|consen 276 LLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIASSAIGALKLALTIAIRYSLSRRQFGPTKNGEEVPILEYPS 355 (661)
T ss_pred HhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHHHHHHHHHHHHHHhhhhHHhHhhhCCCCCCCcceeeechh
Confidence 98432 233445667788999999999999999999999999999999994 6778888
Q ss_pred ccCC
Q psy1303 203 VQLP 206 (206)
Q Consensus 203 iq~~ 206 (206)
.|+|
T Consensus 356 qQ~R 359 (661)
T KOG0135|consen 356 QQYR 359 (661)
T ss_pred HHHH
Confidence 8765
No 42
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.87 E-value=1.5e-21 Score=165.51 Aligned_cols=173 Identities=21% Similarity=0.220 Sum_probs=140.7
Q ss_pred HHHHhhhhHHhcCCeeeEEEeeCCCCC--------CCccCceeEEEEeCCEEEEeeeeeeeeCCCCCCEEEEEEEeCCCC
Q psy1303 27 KQKETYLPSFVDGTNVGCFGISEPGSG--------SDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSK 98 (206)
Q Consensus 27 ~q~~~~l~~i~~g~~~~~~a~te~~~g--------~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~~~~ 98 (206)
+-.++|+..+.+.++..+-+++.|... .|+...-...++++|||+|||.|.|+|++ .+|+++|+++++..+
T Consensus 127 ~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V~~~~~~~~ 205 (477)
T TIGR02309 127 ENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILIFPSTVLKA 205 (477)
T ss_pred HHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEEeccCCCCC
Confidence 456678999999999999999987521 23333334566789999999999999997 999999999876432
Q ss_pred CC-C--ceEEEEeecCCCCeeeccccccCCCCCC-----------ceeeEEEeceeeCCCCc--cCCC---CccHHHHHH
Q psy1303 99 KH-K--GITAFIIPMDSPGLSLGKKEDKLGIRAS-----------STCNVILEDVKIPLDSV--LGKE---GEGFKVGLT 159 (206)
Q Consensus 99 ~~-~--~~~~~lvp~~~~gv~~~~~~~~~g~~~~-----------~~~~v~f~~v~vp~~~~--l~~~---~~~~~~~~~ 159 (206)
+. + -.+.|+||.++||+++....+.+|.++. ..+.+.||||+||++++ +|.. +.+|....
T Consensus 206 ~~~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~a~~~f~~~~- 284 (477)
T TIGR02309 206 GAEKDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVELCNNAYAATG- 284 (477)
T ss_pred ccCCCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHHHHHHHHHHH-
Confidence 22 2 3689999999999999887788888766 66999999999999999 7776 55554322
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccCC
Q psy1303 160 GIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQLP 206 (206)
Q Consensus 160 ~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~~ 206 (206)
.++..++.++|.+..+++.++.+++. .+++.++.++|.||++
T Consensus 285 ----~~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~gi~~~q~VQ~k 326 (477)
T TIGR02309 285 ----AVNHMAHQVVALKIAKTEAFLGVAAL-MAEGIGADGFQHVQEK 326 (477)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcccchHHHHH
Confidence 23677999999999999999999999 9999999999999863
No 43
>KOG0136|consensus
Probab=99.84 E-value=1.4e-20 Score=158.92 Aligned_cols=201 Identities=24% Similarity=0.355 Sum_probs=167.1
Q ss_pred hhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCeeeEEEeeCCCCCCCccCceeEEEEeC--CEEEEe-----eeeee
Q psy1303 6 STILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKES--DHWVLN-----GTKSW 78 (206)
Q Consensus 6 a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~g~~~~~~~~~a~~~~--~g~~l~-----G~k~~ 78 (206)
+..+..|..++...|..-+++||.++|+.+--..++++++|.||.++|+++.+.+|+|+.+. +.|+|| ..|+|
T Consensus 108 ~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta~KWW 187 (670)
T KOG0136|consen 108 GHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTATKWW 187 (670)
T ss_pred CchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcceeccc
Confidence 45678899899999999999999999999999999999999999999999999999999874 579998 68999
Q ss_pred eeCCC-CCCEEEEEEEeCCCCCCCceEEEEeecCC-------CCeeeccccccCCCCCCceeeEEEeceeeCCCCccCCC
Q psy1303 79 ITNGY-EAKAFVCIAQADKSKKHKGITAFIIPMDS-------PGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKE 150 (206)
Q Consensus 79 v~~~~-~a~~~~v~a~~~~~~~~~~~~~~lvp~~~-------~gv~~~~~~~~~g~~~~~~~~v~f~~v~vp~~~~l~~~ 150 (206)
..+.+ .+.|.+|.|+..-++...+...|+||..+ |||++.+.-+++|+.+.+++.+.||||+||.++++..-
T Consensus 188 PGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~nmLmr~ 267 (670)
T KOG0136|consen 188 PGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRTNMLMRH 267 (670)
T ss_pred CCccccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechHhhhhhh
Confidence 99954 58899999999766677888999999643 79999999999999999999999999999999998532
Q ss_pred C----ccH-------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC-------ccccccccccCC
Q psy1303 151 G----EGF-------KVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFG-------APILKLQAVQLP 206 (206)
Q Consensus 151 ~----~~~-------~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g-------~~l~~~~~iq~~ 206 (206)
. +|. ......+-..|..+.....-....|+.+|++|..-|+|+. .-|.|||+.|+|
T Consensus 268 ~kV~~dGtyv~p~~~~l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~i~pg~~E~qIlDyqTQQ~r 341 (670)
T KOG0136|consen 268 AKVEPDGTYVKPPHPKLGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSEIRPGQPEVQILDYQTQQYR 341 (670)
T ss_pred heecCCCccccCCccccceeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCceeeechhHHHH
Confidence 1 121 1111222345666677777777888999999999999985 237788888864
No 44
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.69 E-value=1.5e-16 Score=94.76 Aligned_cols=52 Identities=44% Similarity=0.774 Sum_probs=47.0
Q ss_pred EEEeeCCCCCCCccCceeEEEEeCCEEEEeeeeeeeeCCCCCCEEEEEEEeC
Q psy1303 44 CFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQAD 95 (206)
Q Consensus 44 ~~a~te~~~g~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~ 95 (206)
++|+|||++|+|+..+++++++++++|+|||+|.|++++..||+++|+||++
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d 52 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD 52 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence 5899999999999999999999999999999999999999999999999973
No 45
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=99.08 E-value=1e-09 Score=86.23 Aligned_cols=121 Identities=20% Similarity=0.316 Sum_probs=78.5
Q ss_pred HHHHhhhhHHhcCCeeeEEEeeCCCC--C-----CCccCceeEEEEeCCEEEEeeeeeeeeCCCCCCEEEEEEEeC-CCC
Q psy1303 27 KQKETYLPSFVDGTNVGCFGISEPGS--G-----SDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQAD-KSK 98 (206)
Q Consensus 27 ~q~~~~l~~i~~g~~~~~~a~te~~~--g-----~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a~~~-~~~ 98 (206)
+-.++|+..+.+.++..+-+++.|.. + .|....--..+++++|.+++|.|...|++..+|.++|.-... ...
T Consensus 123 ~n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~ 202 (264)
T PF11794_consen 123 ENIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPG 202 (264)
T ss_dssp HHHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTC
T ss_pred HHHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCC
Confidence 44567889999999999999999862 1 112222334556789999999999999999999999987654 233
Q ss_pred CCCceEEEEeecCCCCeeeccccccC-----CCC-------CCceeeEEEeceeeCCCCcc
Q psy1303 99 KHKGITAFIIPMDSPGLSLGKKEDKL-----GIR-------ASSTCNVILEDVKIPLDSVL 147 (206)
Q Consensus 99 ~~~~~~~~lvp~~~~gv~~~~~~~~~-----g~~-------~~~~~~v~f~~v~vp~~~~l 147 (206)
+.+....|.||.++||+++.-..... ..+ .-.-+-+.||||+||+|+++
T Consensus 203 d~dyAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 203 DEDYAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp CGGG-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred CCceEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 45666789999999999874221111 111 11237889999999999875
No 46
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.95 E-value=2.9e-08 Score=82.80 Aligned_cols=122 Identities=17% Similarity=0.279 Sum_probs=85.8
Q ss_pred HHHHhhhhHHhcCCeeeEEEeeCCCCC--------CCccCceeEEEEeCCEEEEeeeeeeeeCCCCCCEEEEEE-EeCCC
Q psy1303 27 KQKETYLPSFVDGTNVGCFGISEPGSG--------SDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIA-QADKS 97 (206)
Q Consensus 27 ~q~~~~l~~i~~g~~~~~~a~te~~~g--------~~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v~a-~~~~~ 97 (206)
+-..+|+.++.+.++..+-|++.|... .|+...--..+..++|.+++|.|..+|++..+|.++|+. +.-..
T Consensus 131 ~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~Pt~~~~~ 210 (493)
T COG2368 131 ENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLPTRSMQE 210 (493)
T ss_pred HHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEeeccccCC
Confidence 556679999999999999999987521 222222234456689999999999999999999999983 32222
Q ss_pred CCCCceEEEEeecCCCCeeecccc---ccCCCC------------CCceeeEEEeceeeCCCCccC
Q psy1303 98 KKHKGITAFIIPMDSPGLSLGKKE---DKLGIR------------ASSTCNVILEDVKIPLDSVLG 148 (206)
Q Consensus 98 ~~~~~~~~~lvp~~~~gv~~~~~~---~~~g~~------------~~~~~~v~f~~v~vp~~~~l~ 148 (206)
++.+-...|.+|.++||+++.-.. ..-|+. .-.-+-+.||||+||+|+++-
T Consensus 211 ~d~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf~ 276 (493)
T COG2368 211 DDKDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVFI 276 (493)
T ss_pred CCCceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhheee
Confidence 334556689999999998873211 111111 112356899999999999874
No 47
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=98.94 E-value=1.2e-08 Score=87.32 Aligned_cols=122 Identities=17% Similarity=0.199 Sum_probs=85.2
Q ss_pred HHHHhhhhHHhcCCeeeEEEeeCCCCCC------CccCceeEEEEeCCEEEEeeeeeeeeCCCCCCEEEE-EEEeC-CCC
Q psy1303 27 KQKETYLPSFVDGTNVGCFGISEPGSGS------DAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVC-IAQAD-KSK 98 (206)
Q Consensus 27 ~q~~~~l~~i~~g~~~~~~a~te~~~g~------~~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a~~~~v-~a~~~-~~~ 98 (206)
+-.++|+..+.+.++..+-+++.|...- +....-...+++++|.+++|.|...|++..+|.++| ..... -.+
T Consensus 136 ~n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~ 215 (519)
T TIGR02310 136 DNARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGD 215 (519)
T ss_pred HHHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCC
Confidence 4566789999999999999999875211 122223455667899999999999999999999998 33321 012
Q ss_pred CCCceEEEEeecCCCCeeeccccc-c-------CCCC-------CCceeeEEEeceeeCCCCccC
Q psy1303 99 KHKGITAFIIPMDSPGLSLGKKED-K-------LGIR-------ASSTCNVILEDVKIPLDSVLG 148 (206)
Q Consensus 99 ~~~~~~~~lvp~~~~gv~~~~~~~-~-------~g~~-------~~~~~~v~f~~v~vp~~~~l~ 148 (206)
+.+-...|.||.++||+++.-... . ...+ +-.-+-+.||||+||+|+++-
T Consensus 216 d~dyAvaFavP~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~ 280 (519)
T TIGR02310 216 NDDFALMFIAPMDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLI 280 (519)
T ss_pred CCCeEEEEEeEcCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHcee
Confidence 334556799999999998742111 0 0011 112367899999999999984
No 48
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=98.49 E-value=1.6e-07 Score=67.89 Aligned_cols=55 Identities=38% Similarity=0.667 Sum_probs=52.5
Q ss_pred CccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccccccC
Q psy1303 151 GEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQL 205 (206)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~aa~~~G~~~~al~~~~~~~~~R~~~g~~l~~~~~iq~ 205 (206)
++||.++...+...|+.+++.++|.++.+++.+++|+++|.+||+|+.++|.+|+
T Consensus 1 g~G~~~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~~l~~~~~v~~ 55 (150)
T PF00441_consen 1 GQGWAVALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGKPLAEHPAVRR 55 (150)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTEEGGGSHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccchhhhHH
Confidence 4789999999999999999999999999999999999999999999999999875
No 49
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=97.59 E-value=3.6e-05 Score=52.80 Aligned_cols=39 Identities=38% Similarity=0.554 Sum_probs=34.8
Q ss_pred CCcchhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCC
Q psy1303 2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGT 40 (206)
Q Consensus 2 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~ 40 (206)
|+++++.+.+|..+++..|..+|+++|+++|++++++|+
T Consensus 75 ~~~~~~~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 75 DASLAFALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp THHHHHHHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred cccccchhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 667888899987677789999999999999999999986
No 50
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=94.73 E-value=0.033 Score=38.98 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=29.4
Q ss_pred hhhhhhhhhhhHHHHhccCCHHHHHhhhhHHhcCCee
Q psy1303 6 STILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNV 42 (206)
Q Consensus 6 a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~i~~g~~~ 42 (206)
..-+.+|.+++...|...|++||+++|+|...+.+++
T Consensus 89 ~~p~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~Ii 125 (125)
T PF14749_consen 89 GLPLGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEII 125 (125)
T ss_dssp --THHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS-
T ss_pred CchhhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCccC
Confidence 3456789989999999999999999999998877653
No 51
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=36.48 E-value=1.7e+02 Score=21.42 Aligned_cols=49 Identities=16% Similarity=0.254 Sum_probs=28.9
Q ss_pred eeeeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeecc-cccc
Q psy1303 74 GTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGK-KEDK 123 (206)
Q Consensus 74 G~k~~v~~~~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~-~~~~ 123 (206)
+.-.|+......+|++|.|..++.++...+..|+++.. .||.+.+ .|+.
T Consensus 80 tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~g-qgV~~~~GvWH~ 129 (165)
T PF04115_consen 80 TSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGG-QGVNYHRGVWHH 129 (165)
T ss_dssp B-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS--EEEE-TT-EE-
T ss_pred eeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCC-EEEEECCCceeC
Confidence 56677777665558888888554455678889999886 5788743 4653
No 52
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=35.99 E-value=1.3e+02 Score=21.39 Aligned_cols=13 Identities=31% Similarity=0.974 Sum_probs=10.3
Q ss_pred EeCCEEEEeeeee
Q psy1303 65 KESDHWVLNGTKS 77 (206)
Q Consensus 65 ~~~~g~~l~G~k~ 77 (206)
.+.+.|.++|+|.
T Consensus 66 a~~~~WlV~Grrr 78 (147)
T PF12584_consen 66 ADSDNWLVSGRRR 78 (147)
T ss_pred cCCCcEEEeccCc
Confidence 4567799999986
No 53
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=26.85 E-value=23 Score=28.64 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=11.8
Q ss_pred CEEEEeeeeeeeeCC
Q psy1303 68 DHWVLNGTKSWITNG 82 (206)
Q Consensus 68 ~g~~l~G~k~~v~~~ 82 (206)
|||+|||+|...+.-
T Consensus 114 DGW~LnGe~FPs~~D 128 (311)
T PF05428_consen 114 DGWELNGEKFPSSQD 128 (311)
T ss_pred eceEECccCCcCccc
Confidence 689999999765554
No 54
>PF05284 DUF736: Protein of unknown function (DUF736); InterPro: IPR007948 This family consists of several uncharacterised bacterial proteins of unknown function.
Probab=24.30 E-value=2.3e+02 Score=19.14 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=37.1
Q ss_pred CCCCEEEEEEEeCCCCCCCceEEEEeecCCCCeeeccccccCCCC-CCceeeEEEece
Q psy1303 83 YEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIR-ASSTCNVILEDV 139 (206)
Q Consensus 83 ~~a~~~~v~a~~~~~~~~~~~~~~lvp~~~~gv~~~~~~~~~g~~-~~~~~~v~f~~v 139 (206)
..++..+|.......+..+.+.+++-+.+ ++++..-|...+-. +..--.+.+||=
T Consensus 23 ~~~~i~lvP~~~~~~e~aPdyRV~~~~~~--~~EvGaaW~~~~~~tg~~Ylsl~LddP 78 (107)
T PF05284_consen 23 LDAKIRLVPNESKDSENAPDYRVYAGPRG--GVEVGAAWKKTSKDTGRDYLSLKLDDP 78 (107)
T ss_pred ecccEEEEeCCCCCCCCCCCEEEEecCCC--CCceeeeehhhccccCCceEEEEEcCC
Confidence 45666666665423334556666665433 89999999988887 677778888874
Done!