RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1303
(206 letters)
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid
metabolism, FAD, polymorphism, flavoprotein,
mitochondrion, disease mutation; HET: FAD COS; 1.9A
{Homo sapiens} PDB: 1jqi_A*
Length = 391
Score = 320 bits (823), Expect = e-110
Identities = 116/204 (56%), Positives = 151/204 (74%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
GC T I++V+N LY G I KFG+K+QK+ ++ F G +GCF +SEPG+GSDA
Sbjct: 80 GCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAAS 139
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
TTAR E D WVLNGTK+WITN +EA A V A D++ ++K I+AF++PM +PGL+LGKK
Sbjct: 140 TTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKSISAFLVPMPTPGLTLGKK 199
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
EDKLGIR SST N+I ED +IP DS+LG+ G GFK+ + +D RIG+ASQ +GIAQ A
Sbjct: 200 EDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTAL 259
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
DCA+ YA R+AFGAP+ KLQ +Q
Sbjct: 260 DCAVNYAENRMAFGAPLTKLQVIQ 283
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion,
oxidoreductase, transit peptide, fatty acid metabolism,
FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Length = 404
Score = 318 bits (817), Expect = e-109
Identities = 85/204 (41%), Positives = 128/204 (62%), Gaps = 1/204 (0%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
+ + N L LI K GT++QK TYLP + VG F +SE G+GSD+ +
Sbjct: 103 VDASVAVFCEIQNTLINTLIRKHGTEEQKATYLP-QLTTEKVGSFCLSEAGAGSDSFALK 161
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
T A KE D++VLNG+K WI++ A F+ +A D + +KGIT+F++ D+PGL +GK
Sbjct: 162 TRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKP 221
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
E+KLG+RASSTC + E+VK+P ++LG+ G G+K + ++ RIG+A+Q +G+AQ F
Sbjct: 222 ENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCF 281
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
D + Y +RI FG + Q +Q
Sbjct: 282 DYTIPYIKERIQFGKRLFDFQGLQ 305
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain
acyl-COA dehydrogenase, flavoprotein, oxidoreductase;
HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP:
a.29.3.1 e.6.1.1
Length = 383
Score = 312 bits (802), Expect = e-107
Identities = 90/205 (43%), Positives = 135/205 (65%), Gaps = 1/205 (0%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
G + L+ L A I +FGT+ QKE +L V+GT +G FG++EP +G+DA+
Sbjct: 82 YDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQ 141
Query: 61 TTARKESD-HWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGK 119
T A K D + LNG+K +ITNG A ++ A DKSK + GITAFI+ +PG + GK
Sbjct: 142 TIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGK 201
Query: 120 KEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAA 179
KEDK+GI S T ++ +DVK+P +++LG+EG+GFK+ + +D RIG+A+Q +GIA+AA
Sbjct: 202 KEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAA 261
Query: 180 FDCAMEYAGKRIAFGAPILKLQAVQ 204
A+EY+ +R+ FG P+ K Q++
Sbjct: 262 LADAVEYSKQRVQFGKPLCKFQSIS 286
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project protein structural and functional analyses; HET:
FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
PDB: 1ws9_A 2cx9_A*
Length = 387
Score = 311 bits (799), Expect = e-107
Identities = 88/208 (42%), Positives = 125/208 (60%), Gaps = 4/208 (1%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
G + + HN L G I G++ QKE +LP G +G +G++EPGSGSDAA +
Sbjct: 81 YDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALK 140
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADK----SKKHKGITAFIIPMDSPGLS 116
T A K W LNGTK +IT G A +V +A+ D +KH+GI+AF GL
Sbjct: 141 TKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLK 200
Query: 117 LGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIA 176
+G+KE+KLG+ AS T +ILED+ +P +++LG+ G+GF L +D RIG+A+ +G+
Sbjct: 201 VGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLG 260
Query: 177 QAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
QAA D A+ YA R AFG PI + + V
Sbjct: 261 QAALDYALAYAKGREAFGRPIAEFEGVS 288
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP:
a.29.3.1 e.6.1.1
Length = 379
Score = 310 bits (796), Expect = e-106
Identities = 84/204 (41%), Positives = 126/204 (61%), Gaps = 1/204 (0%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
C G TI + + L + GT++QKE +L + + F +SEPG+GSDAA +
Sbjct: 79 ACMGIYTIP-MASDLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALK 137
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
T A ++ DH+VLNGTK WI+NG EA+ V A + +HKG+ A ++ +PG K
Sbjct: 138 TRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKI 197
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
K+G RAS T ++ EDVK+P+++ LG+EGEGFK+ + ++ RI +A+ +G+A+ A
Sbjct: 198 HGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLNKTRIPVAAGSVGVARRAL 257
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
D A +YA +R AFG PI QA+Q
Sbjct: 258 DEARKYAKEREAFGEPIANFQAIQ 281
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
FDA; 2.10A {Mycobacterium thermoresistibile}
Length = 393
Score = 309 bits (794), Expect = e-106
Identities = 76/204 (37%), Positives = 114/204 (55%), Gaps = 1/204 (0%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
S I V+ L + G+++ K+ LP+ G + + +SE +GSDAA+M
Sbjct: 93 VDCSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMR 151
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
T A + D W+LNG+K WITNG ++ + +A D K GI+AF++ D G ++G K
Sbjct: 152 TRAVADGDDWILNGSKCWITNGGKSTWYTVMAVTDPDKGANGISAFMVHKDDEGFTVGPK 211
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
E KLGI+ S T + E+ +IP D ++G+ G GFK L +D R + +Q +GIAQ A
Sbjct: 212 ERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHTRPTIGAQAVGIAQGAL 271
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
D A+ Y +R FG P+ Q VQ
Sbjct: 272 DAAIAYTKERKQFGRPVSDNQGVQ 295
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA
dehydrogenase, flavoprotein, isovaleric acidemia; HET:
FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 394
Score = 305 bits (785), Expect = e-104
Identities = 80/206 (38%), Positives = 114/206 (55%), Gaps = 2/206 (0%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
G H+ L + + G + QKE YLP + G +G +SEP +GSD +M
Sbjct: 89 ASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMK 148
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSK--KHKGITAFIIPMDSPGLSLG 118
A K+ +H++LNG K WITNG +A + A+ D + +GITAFI+ PG S
Sbjct: 149 LKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTS 208
Query: 119 KKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQA 178
KK DKLG+R S+TC +I ED KIP ++LG E +G V ++G+D R+ +A +G+ QA
Sbjct: 209 KKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLDLERLVLAGGPLGLMQA 268
Query: 179 AFDCAMEYAGKRIAFGAPILKLQAVQ 204
D + Y R AFG I Q +Q
Sbjct: 269 VLDHTIPYLHVREAFGQKIGHFQLMQ 294
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project on protein STR and functional analyses; HET:
FAD; 2.50A {Thermus thermophilus}
Length = 372
Score = 302 bits (777), Expect = e-104
Identities = 77/204 (37%), Positives = 125/204 (61%), Gaps = 5/204 (2%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
+ I++V + L ++ +FG++ QK YL G +G F ++EP +GSDA ++
Sbjct: 77 ADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLR 136
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
AR+ +VLNG KSWIT+ A +V +A+ +K GI+AF++ +PGLS G+
Sbjct: 137 AEARRVKGGFVLNGVKSWITSAGHAHLYVVMARTEK-----GISAFLVEKGTPGLSFGRP 191
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
E+K+G+ A+ T V LE+V +P +++LG+EG G L G+D R+G+A+Q +GIA+ AF
Sbjct: 192 EEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRVGVAAQAVGIARGAF 251
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
+ A YA +R FG + + QA+
Sbjct: 252 EIAKAYAEEREQFGKKLKEHQAIA 275
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET:
FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Length = 397
Score = 303 bits (778), Expect = e-103
Identities = 74/205 (36%), Positives = 117/205 (57%), Gaps = 2/205 (0%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
G L + A I +G++ K+ Y+P +G FGI+EP +GSD M
Sbjct: 82 GSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMS 141
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFII-PMDSPGLSLGK 119
+TA + DHW+LNG+K+WI+N +A + A DK+ +G++AF+I P + PG+
Sbjct: 142 STAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKTSN 201
Query: 120 KEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAA 179
E KLG AS T + L++VK+P +++LGK G+G ++ ++ R+ A+ G+G+AQA
Sbjct: 202 LE-KLGSHASPTGELFLDNVKVPKENILGKPGDGARIVFGSLNHTRLSAAAGGVGLAQAC 260
Query: 180 FDCAMEYAGKRIAFGAPILKLQAVQ 204
D A++Y +R FG PI Q Q
Sbjct: 261 LDAAIKYCNERRQFGKPIGDFQMNQ 285
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron
transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1
e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A*
3mdd_A* 3mde_A*
Length = 396
Score = 303 bits (778), Expect = e-103
Identities = 76/207 (36%), Positives = 122/207 (58%), Gaps = 4/207 (1%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
GC G T + ++ L I G +QK+ YL + + + ++EPG+GSD A +
Sbjct: 90 GCTGVQTAIEGNS-LGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIK 148
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQAD---KSKKHKGITAFIIPMDSPGLSL 117
T A K+ D +++NG K WITNG +A + +A++D K+ +K T FI+ D+PG+ +
Sbjct: 149 TKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQI 208
Query: 118 GKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQ 177
G+KE +G R S T ++ EDVK+P ++VL +G GFKV + D R +A+ +G+AQ
Sbjct: 209 GRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKERPVVAAGAVGLAQ 268
Query: 178 AAFDCAMEYAGKRIAFGAPILKLQAVQ 204
A D A +YA +R FG +++ QA+
Sbjct: 269 RALDEATKYALERKTFGKLLVEHQAIS 295
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial;
flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC;
1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 393
Score = 302 bits (777), Expect = e-103
Identities = 71/204 (34%), Positives = 122/204 (59%), Gaps = 2/204 (0%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
GC T+ +++HN + A +I+ FG ++Q+ + P + ++EPGSGSDAA++L
Sbjct: 93 GCTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLL 151
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
T+A+K+ DH++LNG+K++I+ E+ +V + + KGI+ ++ +PGLS GKK
Sbjct: 152 TSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTG-GPGPKGISCIVVEKGTPGLSFGKK 210
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
E K+G + T VI ED +P+ + +G EG+GF + + G++ RI +AS +G A A+
Sbjct: 211 EKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGGRINIASCSLGAAHASV 270
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
++ R FG P+ Q +Q
Sbjct: 271 ILTRDHLNVRKQFGEPLASNQYLQ 294
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for
infectious disease, S FAD, FADH, tuberculosis,
oxidoredu; HET: FAD; 2.35A {Mycobacterium
thermoresistibile}
Length = 387
Score = 299 bits (767), Expect = e-102
Identities = 72/204 (35%), Positives = 123/204 (60%), Gaps = 3/204 (1%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
+ ++VH+ L + + FGT++QK+ +LP + G +G + +SEP +GSDAA +
Sbjct: 90 RWASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALR 148
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
A +V+NG+KSWIT+G +A + A+ + +G++ F++P D PGLS GK
Sbjct: 149 CAATPTDGGYVINGSKSWITHGGKADFYTLFARTGE--GSRGVSCFLVPADQPGLSFGKP 206
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
E+K+G+ A T + ++ +I D +G+EG+G ++ + +D R+G+A+ G+AQAA
Sbjct: 207 EEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGRLGIAAVATGLAQAAL 266
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
D A+ YA +R AFG I+ Q +
Sbjct: 267 DEAVAYANERTAFGRKIIDHQGLG 290
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na
project on protein structural and functional analyses;
HET: FAD; 2.30A {Thermus thermophilus}
Length = 577
Score = 290 bits (743), Expect = 4e-96
Identities = 80/206 (38%), Positives = 119/206 (57%), Gaps = 6/206 (2%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
G GG S H + + FGT++QK YLP G + + ++EPGSGSDA
Sbjct: 102 GSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAK 161
Query: 61 TTARKESD--HWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLG 118
T A D H++LNG K WI+N A F A+ D + TAF++ D+PGLS G
Sbjct: 162 TRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAKVDG----EHFTAFLVERDTPGLSFG 217
Query: 119 KKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQA 178
+E K+GI+ASST VILEDVK+P+++VLG+ G+G K+ ++ R + + +G A+
Sbjct: 218 PEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGRYKLGAGAVGGAKR 277
Query: 179 AFDCAMEYAGKRIAFGAPILKLQAVQ 204
A + + +YA +R+ FG PI + +Q
Sbjct: 278 ALELSAQYATQRVQFGRPIGRFGLIQ 303
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA
dehydrogenase, , aldehyde dehydrogenase, oxidoreductase;
HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP:
a.29.3.1 e.6.1.1
Length = 366
Score = 279 bits (717), Expect = 8e-95
Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 7/205 (3%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
C +++T + A + + G Q+ T+L G + G SE +GSD + M
Sbjct: 67 LCSSLRSVMTSQG-MAAWTVQRLGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMR 124
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
T R + D V++G K W T A V + ++P D+PG+ + +
Sbjct: 125 TRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQEDG----SGAVVVVPADTPGVRVERV 180
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGI-DCARIGMASQGIGIAQAA 179
G RA+ ++ L+ V++P +VL G + + R +A +GI +A
Sbjct: 181 PKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGILRAC 240
Query: 180 FDCAMEYAGKRIAFGAPILKLQAVQ 204
A+ +A R FG P+ Q V
Sbjct: 241 RTAAVAHARTREQFGRPLGDHQLVA 265
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-structure,
beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus
anthracis}
Length = 597
Score = 285 bits (730), Expect = 5e-94
Identities = 72/205 (35%), Positives = 111/205 (54%), Gaps = 6/205 (2%)
Query: 2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLT 61
GG + H + + I FG ++QK+ YLP G + + ++EPGSGSDA T
Sbjct: 108 AGGFAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKT 167
Query: 62 TAR--KESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGK 119
TAR E H+VLNG K WITN A F+ A+ D + +AFI+ D G+S
Sbjct: 168 TARLNAEGTHYVLNGEKQWITNSAFADVFIVYAKIDG----EHFSAFIVEKDYAGVSTSP 223
Query: 120 KEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAA 179
+E K+GI+ SST +ILED +P +++LG+ G+G + ++ R + +G A+ A
Sbjct: 224 EEKKMGIKCSSTRTLILEDALVPKENLLGEIGKGHIIAFNILNIGRYKLGVGTVGSAKRA 283
Query: 180 FDCAMEYAGKRIAFGAPILKLQAVQ 204
+ + +YA +R F PI + +Q
Sbjct: 284 VEISAQYANQRQQFKQPIARFPLIQ 308
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid
metabolism, transit peptide, disease mutation, LI
metabolism, coenzyme A dehydrogenase; HET: FAD TH3;
1.45A {Homo sapiens} PDB: 3b96_A*
Length = 607
Score = 284 bits (728), Expect = 1e-93
Identities = 75/211 (35%), Positives = 109/211 (51%), Gaps = 7/211 (3%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
G L H + I FGTK QKE YLP G V F ++EP SGSDAA++
Sbjct: 122 HDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIR 181
Query: 61 TTARKES--DHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKG-----ITAFIIPMDSP 113
T+A ++ LNG+K WI+NG A F A+ + G ITAF++
Sbjct: 182 TSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFG 241
Query: 114 GLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGI 173
G++ G E K+GI+AS+T V + V++P ++VLG+ G GFKV + ++ R GMA+
Sbjct: 242 GITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALA 301
Query: 174 GIAQAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
G + A+++A R FG I +Q
Sbjct: 302 GTMRGIIAKAVDHATNRTQFGEKIHNFGLIQ 332
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase
family, kijanose, kijani FAD, flavoprotein; HET: TYD;
2.05A {Actinomadura kijaniata}
Length = 439
Score = 273 bits (701), Expect = 2e-91
Identities = 42/203 (20%), Positives = 82/203 (40%), Gaps = 2/203 (0%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
T+ L + L ++ ++ L + V + G +
Sbjct: 94 ADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHTAVT 153
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
T + W+L+G K+ ++ FV A+ D + + + ++ D+PG ++
Sbjct: 154 TLRPDGAGGWLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDN 213
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFK--VGLTGIDCARIGMASQGIGIAQA 178
D LG+RAS T +++ +D IP D VL ++ G + L G + + + +G+AQA
Sbjct: 214 WDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGARNDAVLAGQTVSSVSVLGVYVGVAQA 273
Query: 179 AFDCAMEYAGKRIAFGAPILKLQ 201
A+D A+ +R
Sbjct: 274 AYDTAVAALERRPEPPQAAALTL 296
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas
oxidoreductase; 3.15A {Micromonospora carbonacea}
Length = 395
Score = 259 bits (663), Expect = 3e-86
Identities = 52/211 (24%), Positives = 81/211 (38%), Gaps = 16/211 (7%)
Query: 1 GCGGTSTILTVHN--CLYAGLINKFGT---KKQKETYLPSFVDGTNVGCFGISEPGSGSD 55
T+ V L + GT + E L + +G C D
Sbjct: 83 ADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGA------LKD 136
Query: 56 AANMLTTARKE-SDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPG 114
A ++T + + W+L+G K ++ A F AQ + ++ D+PG
Sbjct: 137 APGVVTELHSDGAGGWLLSGRKVLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPG 196
Query: 115 LSLGKKEDKLGIRASSTCNVILEDVKIPLDSVL--GKEGEGFKVGLTGIDCARIGMASQG 172
L++ D LG+RAS T V+ + + D +L G G L G + I M
Sbjct: 197 LTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGARRDAVLAGQTVSSITMLGIY 256
Query: 173 IGIAQAAFDCAMEYAGKRIAFGAPILKLQAV 203
GIAQAA D A+ + R G P +A+
Sbjct: 257 AGIAQAARDIAVGFCAGR--GGEPRAGARAL 285
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA
structural genomics, PSI, protein structure initiative;
HET: FAD; 1.80A {Geobacillus kaustophilus}
Length = 385
Score = 256 bits (657), Expect = 1e-85
Identities = 69/205 (33%), Positives = 117/205 (57%), Gaps = 2/205 (0%)
Query: 2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLT 61
G + + +HN + I +GT++QK+ +LP V G + ++EPG+GSD AN+ T
Sbjct: 84 VGSSLVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANIST 143
Query: 62 TARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKK--HKGITAFIIPMDSPGLSLGK 119
TA K+ D++++NG K++ITNG A V + D K H+GI+ ++ D+PG + G+
Sbjct: 144 TAVKDGDYYIVNGQKTFITNGIHADLIVVACKTDPQAKPPHRGISLLVVERDTPGFTRGR 203
Query: 120 KEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAA 179
K +K+G+ A T + +D K+P ++LG+EG+GF + + R+ +A A+
Sbjct: 204 KLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLMEKLQQERLVVAIAAQTAAEVM 263
Query: 180 FDCAMEYAGKRIAFGAPILKLQAVQ 204
F +Y +R AFG + + Q VQ
Sbjct: 264 FSLTKQYVKQRTAFGKRVSEFQTVQ 288
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA
dehydrogenase, long cell EDGE, FAD, inhibitor,
flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium
oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A*
2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Length = 439
Score = 256 bits (655), Expect = 1e-84
Identities = 42/233 (18%), Positives = 86/233 (36%), Gaps = 30/233 (12%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDG--TNVGCFGISEPGSGSD--- 55
TS + V L + + +E +L F+ G + SEP ++
Sbjct: 86 VEPATSITI-VATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQ 144
Query: 56 --AANMLTTARKESDHWVLNGTKSWITNGYE-----AKAFVCIAQAD---------KSKK 99
+ TTARK + WV++G K W +N A + +
Sbjct: 145 KGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDP 204
Query: 100 HKGITAFIIPMDSPGLS------LGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEG 153
I ++ ++ + + + + G +S + + +P +++L G
Sbjct: 205 ATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLK 264
Query: 154 FK-VGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGA-PILKLQAVQ 204
+ + T + + + IG A+AAF+ A+ +A G+ I++ Q+V
Sbjct: 265 AQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVA 317
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FAO; 1.70A {Mycobacterium
smegmatis} PDB: 3oib_A*
Length = 403
Score = 254 bits (650), Expect = 3e-84
Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 1/204 (0%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
G G + + G ++ +TY+ + G +G I+EPG GSD ++
Sbjct: 101 GSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLR 160
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
T A + DH+V+NG K++IT+G A V A+ G++ ++ +PG + +K
Sbjct: 161 TRADLDGDHYVINGAKTYITSGVRADYVVTAARTG-GPGAGGVSLIVVDKGTPGFEVTRK 219
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
DK+G R+S T + DV++P+ +++G E GF R+G+A+Q AQ
Sbjct: 220 LDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQIAAAFVAERVGLATQAYAGAQRCL 279
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
D +E+ R FG P++ QAVQ
Sbjct: 280 DLTVEWCRNRDTFGRPLISRQAVQ 303
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA
dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A
{Podospora anserina}
Length = 438
Score = 254 bits (652), Expect = 4e-84
Identities = 53/229 (23%), Positives = 86/229 (37%), Gaps = 27/229 (11%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDG--TNVGCFGISEPGSGSDA-- 56
+ + L IN Q +L F+ G + + SEPG ++A
Sbjct: 88 VEPSAALTIFATG-LGLTPIN-LAAGPQHAEFLAPFLSGEGSPLASLVFSEPGGVANALE 145
Query: 57 ---ANMLTTARKESDHWVLNGTKSWITNGYEAKA--------FVCIAQADKSKKHKGITA 105
TTAR E D WV+NG K W TN A +
Sbjct: 146 KGAPGFQTTARLEGDEWVINGEKMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPENK 205
Query: 106 FII---------PMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKV 156
+I + + G + S +V +V++P +VL G+G KV
Sbjct: 206 VMIILVTRADLDRNGEGSFEVLRHVATPGHTSVSGPHVRYTNVRVPTKNVLCPAGQGAKV 265
Query: 157 GLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFG-APILKLQAVQ 204
D + + + + G+G+ +AAFD A+++A + G P+L+ QA
Sbjct: 266 AFGAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAVPLLERQAFA 314
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FDA; 2.50A {Mycobacterium
abscessus}
Length = 403
Score = 250 bits (641), Expect = 8e-83
Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 2/205 (0%)
Query: 1 GCGGTSTILTVHNC-LYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANM 59
G T + + I G+ E Y+ + G +G G++EPG+GSD AN+
Sbjct: 103 AGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANL 162
Query: 60 LTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGK 119
T A +E D +V+NG K++IT+G A FV A + G++ +I +SPG + +
Sbjct: 163 RTRAVREGDTYVVNGAKTFITSGVRAD-FVTTAVRTGGPGYGGVSLLVIDKNSPGFEVSR 221
Query: 120 KEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAA 179
+ DK+G R S T + DV++P D+++G E GF + R+G+A Q A A
Sbjct: 222 RLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQFQAERLGIAVQAYATAGRA 281
Query: 180 FDCAMEYAGKRIAFGAPILKLQAVQ 204
D A +A +R FG P+ Q ++
Sbjct: 282 LDLAKSWARERETFGRPLTGRQIIR 306
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening,
optimization, protein crystallization, structural
genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei
1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Length = 396
Score = 249 bits (639), Expect = 1e-82
Identities = 70/204 (34%), Positives = 110/204 (53%), Gaps = 2/204 (0%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
G ++++V + L I +FG+ QKE YLP G +GCFG++EP GSD +M+
Sbjct: 93 VDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMV 152
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
T ARK + L+G+K WITN A FV A+ D+ I FI+ GLS
Sbjct: 153 TRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDE-DGRDEIRGFILEKGCKGLSAPAI 211
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
K+G+RAS T ++L++ +P +++L +G + T ++ AR G+A +G A++ +
Sbjct: 212 HGKVGLRASITGEIVLDEAFVPEENILP-HVKGLRGPFTCLNSARYGIAWGALGAAESCW 270
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
A +Y R FG P+ Q +Q
Sbjct: 271 HIARQYVLDRKQFGRPLAANQLIQ 294
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase,
mycobacerium smegmatis, S genomics; HET: FDA; 1.45A
{Mycobacterium smegmatis}
Length = 399
Score = 249 bits (638), Expect = 2e-82
Identities = 70/204 (34%), Positives = 109/204 (53%), Gaps = 6/204 (2%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
G G + ++V L I ++G+++QK +LP G +GCFG++EP GS+ A M
Sbjct: 99 GDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMR 158
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
T AR++ W+LNGTK WITNG A AQ D GI F++P D+PG + +
Sbjct: 159 TRARRDGSDWILNGTKMWITNGNLADVATVWAQTD-----DGIRGFLVPTDTPGFTANEI 213
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
KL +RAS T ++L++V++P + L EG L+ ++ AR G+ +G A+ +
Sbjct: 214 HRKLSLRASVTSELVLDNVRLPASAQLP-LAEGLSAPLSCLNEARFGIVFGALGAARDSL 272
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
+ + Y R F P+ Q Q
Sbjct: 273 ETTIAYTQSREVFDKPLSNYQLTQ 296
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin,
peroxisome, glyoxysome, fatty acid metabo lipid
metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A
{Arabidopsis thaliana} PDB: 2ix6_A*
Length = 436
Score = 247 bits (632), Expect = 4e-81
Identities = 66/204 (32%), Positives = 101/204 (49%), Gaps = 4/204 (1%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
ST + VH+ L I G++ QKE YLPS V C+ ++EP +GSDA+ +
Sbjct: 128 VDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLG 187
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
TTA K W +NG K WI N A + A ++ I FI+ D+PGL K
Sbjct: 188 TTATKVEGGWKINGQKRWIGNSTFADLLIIFA---RNTTTNQINGFIVKKDAPGLKATKI 244
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
+K+G+R +++L++V +P + L F+ + +R+ +A Q IGI+ +
Sbjct: 245 PNKIGLRMVQNGDILLQNVFVPDEDRLP-GVNSFQDTSKVLAVSRVMVAWQPIGISMGIY 303
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
D Y +R FGAP+ Q Q
Sbjct: 304 DMCHRYLKERKQFGAPLAAFQLNQ 327
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; HET: FDA; 1.70A
{Mycobacterium smegmatis}
Length = 403
Score = 244 bits (625), Expect = 2e-80
Identities = 71/204 (34%), Positives = 107/204 (52%), Gaps = 6/204 (2%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
G G ++++V L I+ FG+ +QK+ +LP G +GCFG++EP GSD A M
Sbjct: 104 GDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMR 163
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
T A + D W+L GTK WITNG A V A+ D +GI F++P D+PG +
Sbjct: 164 TRATRSGDDWILTGTKMWITNGSVADVAVVWARTD-----EGIRGFVVPTDTPGFTANTI 218
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAF 180
+ K+ +RAS T ++L+ V++P + L L ++ AR G+ +G A+
Sbjct: 219 KSKMSLRASVTSELVLDGVRLPDSARLP-GATSLGAPLRCLNEARFGIVFGALGAARDCL 277
Query: 181 DCAMEYAGKRIAFGAPILKLQAVQ 204
+ A+ YA R F PI Q Q
Sbjct: 278 ETALAYACSREQFDRPIGGFQLTQ 301
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD,
STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus
thermophilus}
Length = 385
Score = 236 bits (604), Expect = 2e-77
Identities = 76/205 (37%), Positives = 115/205 (56%), Gaps = 6/205 (2%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDA-ANM 59
G + ++V + L I +G+++QK +LP G VGCFG++EP GSD NM
Sbjct: 85 VDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNM 144
Query: 60 LTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGK 119
T AR+E D WVLNGTK WITNG A V A+ + + + F++P D+PG +
Sbjct: 145 KTRARREGDTWVLNGTKMWITNGNLAHLAVIWAKDEGGE----VLGFLVPTDTPGFQARE 200
Query: 120 KEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAA 179
+ K+ +RAS T ++LE+V++P L + G K L+ + AR G+A +G +A
Sbjct: 201 VKRKMSLRASVTSELVLEEVRVPESLRLP-KALGLKAPLSCLTQARFGIAWGAMGALEAV 259
Query: 180 FDCAMEYAGKRIAFGAPILKLQAVQ 204
++ A+ +A R FG P+ K Q VQ
Sbjct: 260 YEEAVAFAKSRSTFGEPLAKKQLVQ 284
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase,
decarboxylation, flavin protein, oxidoreductase; HET:
FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB:
2r0n_A* 1sir_A* 2r0m_A*
Length = 392
Score = 224 bits (573), Expect = 9e-73
Identities = 66/206 (32%), Positives = 109/206 (52%), Gaps = 7/206 (3%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
G + ++V + L I +G+++Q++ YLP G +GCFG++EP SGSD ++M
Sbjct: 87 VDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSME 146
Query: 61 TTARKESD--HWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLG 118
T A S + LNGTK+WITN A FV A+ + I F++ GLS
Sbjct: 147 TRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGFLLEKGMRGLSAP 202
Query: 119 KKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQA 178
+ + K +RAS+T +I++ V++P ++VL ++ AR G+A +G ++
Sbjct: 203 RIQGKFSLRASATGMIIMDGVEVPEENVLP-GASSLGGPFGCLNNARYGIAWGVLGASEF 261
Query: 179 AFDCAMEYAGKRIAFGAPILKLQAVQ 204
A +YA R+ FG P+ + Q +Q
Sbjct: 262 CLHTARQYALDRMQFGVPLARNQLIQ 287
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle,
oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus}
SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Length = 661
Score = 181 bits (460), Expect = 7e-54
Identities = 43/236 (18%), Positives = 84/236 (35%), Gaps = 33/236 (13%)
Query: 2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLT 61
G L +H ++ + T +Q+E + + G + +E G G+ + T
Sbjct: 93 HRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLET 152
Query: 62 TAR--KESDHWVLNG-----TKSWITN-GYEAKAFVCIAQADKSKKHKGITAFIIPMDS- 112
TA ++ ++LN K W G + + +AQ + G+ AF++P+
Sbjct: 153 TATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREI 212
Query: 113 ------PGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGE-----------GFK 155
PG+++G K G + +++ +IP +++L K + K
Sbjct: 213 GTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNK 272
Query: 156 VGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGA-------PILKLQAVQ 204
+ + R + A A+ Y+ R IL Q Q
Sbjct: 273 LTYGTMVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQ 328
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD
cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP:
a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Length = 659
Score = 167 bits (425), Expect = 6e-49
Identities = 46/241 (19%), Positives = 92/241 (38%), Gaps = 37/241 (15%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
+ +H ++ I GT++Q++ +L +GC+ +E G GS+ +
Sbjct: 91 HFIDQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLE 150
Query: 61 TTAR--KESDHWVLNG-----TKSWITN-GYEAKAFVCIAQADKSKKHKGITAFIIPMDS 112
TTA ++D +V++ +K W G + V A+ + K GI FI+ + S
Sbjct: 151 TTATLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRS 210
Query: 113 -------PGLSLGKKEDKLG---IRASSTCNVILEDVKIPLDSVLGKEGE---------- 152
P +++G K+G + ++ + V+IP D +L + +
Sbjct: 211 LEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPS 270
Query: 153 --GFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGA-------PILKLQAV 203
++ + R + + A A Y+ R FGA ++ +
Sbjct: 271 DVPKQLVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQ 330
Query: 204 Q 204
Q
Sbjct: 331 Q 331
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein,
oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Length = 428
Score = 153 bits (388), Expect = 6e-45
Identities = 47/197 (23%), Positives = 94/197 (47%), Gaps = 14/197 (7%)
Query: 19 LINKFGTKKQKETYLPSFVDGTNVGCFGISEPG-SGSDAANMLTTARKESDHWVLNGTKS 77
+++ +G+++QK+ +L + G CF ++EP + SDA N+ + +++ D +V+NG K
Sbjct: 126 VLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGKKW 185
Query: 78 WITNGYEAKAFVCIAQA----DKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASST-- 131
W + K + I +HK + ++PM++PG+ + + G +
Sbjct: 186 WSSGAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGG 245
Query: 132 -CNVILEDVKIPLDSVLGKEGEGFKVG---LTGIDCARIGMASQGIGIAQAAFDCAMEYA 187
+ V++P +++ EG GF++ L RI + +G+A+ A E A
Sbjct: 246 HFEIHFNQVRVPATNLILGEGRGFEISQGRLGP---GRIHHCMRTVGLAERALQIMCERA 302
Query: 188 GKRIAFGAPILKLQAVQ 204
+RIAF + + V
Sbjct: 303 TQRIAFKKKLYAHEVVA 319
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme
hydroxylase, oxidoreductase; 2.3A {Acinetobacter
baumannii} PDB: 2jbs_A* 2jbt_A*
Length = 422
Score = 118 bits (297), Expect = 7e-32
Identities = 34/220 (15%), Positives = 69/220 (31%), Gaps = 31/220 (14%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
C GT+ ++ + I F + Q E + + S +
Sbjct: 106 ACAGTAWAFSLLCTH-SHQIAMFSKQLQDEI-------------WLKDPDATASSSIAPF 151
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
+ +LNG W + A+ + + +K + +IP +
Sbjct: 152 GKVEEVEGGIILNGDYGWSSGCDHAEYAIVGFNRFDADGNKIYSFGVIPRS--DYEIVDN 209
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEG--EGFKVGLTGIDCARI-----------G 167
I++S + + L +V IP + + EG G ++I G
Sbjct: 210 WYAQAIKSSGSKMLKLVNVFIPEYRISKAKDMMEGKSAGFGLYPDSKIFYTPYRPYFASG 269
Query: 168 MASQGIGIAQAAFDCAMEYAGKRI--AFGAPILKLQAVQL 205
++ +GIA+ + E R+ GA + +
Sbjct: 270 FSAVSLGIAERMIEAFKEKQRNRVRAYTGANVGLATPALM 309
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein,
oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB:
3u33_A*
Length = 541
Score = 111 bits (280), Expect = 6e-29
Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 19/190 (10%)
Query: 19 LINKFGTKKQKETYLPSFVDGTNVGCF----GISEPGSGSDAANMLTTARKESD-HWVLN 73
+ T + Y + G G++E GSD + T A + D + L
Sbjct: 152 PFQDWTTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLV 211
Query: 74 GTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSP-----GLSLGKKEDKLGIRA 128
G K + + ++ A + +AQ G++ F +P P + L + +DKLG R+
Sbjct: 212 GHKWFFSVP-QSDAHLVLAQTAG-----GLSCFFVPRFLPDGQRNAIRLERLKDKLGNRS 265
Query: 129 SSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAG 188
+++C V +D L LG EGEG ++ L R A + + AF A+ +A
Sbjct: 266 NASCEVEFQDAIGWL---LGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAH 322
Query: 189 KRIAFGAPIL 198
+R FG P++
Sbjct: 323 QRHVFGNPLI 332
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix
bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Length = 515
Score = 108 bits (269), Expect = 1e-27
Identities = 29/205 (14%), Positives = 54/205 (26%), Gaps = 25/205 (12%)
Query: 20 INKFGTKKQK--ETYLPSFVDGTNVGCFGISEP------GSGSDAANMLTTARKESDHWV 71
I G + +L + +P + + L K D +
Sbjct: 124 IGAEGRNLTQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSPNLRIVEKTDDGII 183
Query: 72 LNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSL---------GKKED 122
+NG K+ T + + IP ++PG+++ E
Sbjct: 184 VNGVKAVGTGIAFGDYMHIGCLYRPGIPGEQVIFAAIPTNTPGVTVFCRESTVKNDPAEH 243
Query: 123 KLGIR-ASSTCNVILEDVKIPLDSVL--GKEGEGFKVGLTGIDCARIGMASQGIGIAQAA 179
L + + ++V IP + V G D + + + A+
Sbjct: 244 PLASQGDELDSTTVFDNVFIPWEQVFHIGNPEHAKLYPQRIFDWVHYHILIRQVLRAELI 303
Query: 180 FDCAMEYAGKRIAFGAPILKLQAVQ 204
A I KL V
Sbjct: 304 VGLA-----ILITEHIGTSKLPTVS 323
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8
center, oxygnase component, 4- hydroxyphenylacetate
3-monooxygenase; 1.60A {Thermus thermophilus} PDB:
2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Length = 481
Score = 102 bits (255), Expect = 9e-26
Identities = 37/225 (16%), Positives = 66/225 (29%), Gaps = 22/225 (9%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTK--KQKETYLPSFVDGTNVGCFGISEPGSG----- 53
G G S + + + + Y D ++ P
Sbjct: 96 GMMGRSPDYLNAVVMAYAASADYFGEFAENVRNYYRYLRDQDLATTHALTNPQVNRARPP 155
Query: 54 ---SDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPM 110
D + ++ V+ G + T + + + ++ K AF +P
Sbjct: 156 SGQPDPYIPVGVVKQTEKGIVVRGARMTATFPLADEVLIFPSILLQAGSEKYALAFALPT 215
Query: 111 DSPGLSLGKKEDKLGIRAS-----------STCNVILEDVKIPLDSVLGKEGEGFKVGLT 159
+PGL +E +G + C VI +DV +P + V
Sbjct: 216 STPGLHFVCREALVGGDSPFDHPLSSRVEEMDCLVIFDDVLVPWERVFILGNVELCNNAY 275
Query: 160 GIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
G A MA Q + + A + + A +A G VQ
Sbjct: 276 GATGALNHMAHQVVALKTAKTEAFLGVA-ALMAEGIGADVYGHVQ 319
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural
genomics protein structure initiative, midwest center
for structural genomics, MCSG; HET: 1PS; 1.65A
{Rhodococcus SP} PDB: 3aff_A 3afe_A
Length = 394
Score = 89.3 bits (222), Expect = 2e-21
Identities = 34/202 (16%), Positives = 75/202 (37%), Gaps = 28/202 (13%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
CG T + ++ ++ + F + Q++ + + T+V S + +
Sbjct: 78 ACGSTGWVSSIIG-VHNWHLALFSQQAQEDV----WGNDTDVR---------ISSSYAPM 123
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKK 120
+ + +NG +W + A V K + +F+IP + +
Sbjct: 124 GAGQVVDGGYTVNGAWAWSSGCDHASWAVLGGPVIKDGRPVDFVSFLIPRE--DYRIDDV 181
Query: 121 EDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTGIDCAR------------IGM 168
+ +G+R + + V++EDV +P VL + +
Sbjct: 182 WNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTAPVYKMPWGTIHPTTI 241
Query: 169 ASQGIGIAQAAFDCAMEYAGKR 190
++ +G+A A+D +E+ GKR
Sbjct: 242 SAPIVGMAYGAYDAHVEHQGKR 263
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes,
beta-strands, lyase; HET: FAD; 1.60A {Clostridium
aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Length = 490
Score = 89.1 bits (220), Expect = 4e-21
Identities = 38/230 (16%), Positives = 65/230 (28%), Gaps = 30/230 (13%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTK--KQKETYLPSFVDGTNVGCFGISEPGSG----- 53
C G V + + K+GT K YL + + +++P
Sbjct: 102 RCVGMDAFNAVFST-TYEIDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAP 160
Query: 54 ---SDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKG-ITAFIIP 109
D L K D V+ G K+ T + + + ++ K +F P
Sbjct: 161 SAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSHEHIIMPTIAMTEADKDYAVSFACP 220
Query: 110 MDSPGLSLGKKEDKLGIRAS---------------STCNVILEDVKIPLDSVLGKEGEGF 154
D+ GL + R V+ ++V IP D + + F
Sbjct: 221 SDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIFLCQEYDF 280
Query: 155 KVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
+ G Q G + + A A K V+
Sbjct: 281 AGMMVE---RFAGYHRQSYGGCKVGVGDVVIGAAALAADYNGAQKASHVK 327
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics,
PSI-2, protein structure initiative, midwest CENT
structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus
SP}
Length = 414
Score = 64.0 bits (156), Expect = 2e-12
Identities = 32/223 (14%), Positives = 68/223 (30%), Gaps = 37/223 (16%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
G + + + ++ + + Q+E + + + P
Sbjct: 91 LDGASGWVTGIVG-VHPWELAFADPQVQEEI----WGEDNDTWMASPYAPM--------- 136
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVC---IAQADKSKKHKGITAFIIPMDSPGLSL 117
A +VL G S+ + + + + I+P +
Sbjct: 137 GVATPVDGGYVLKGRWSFSSGTDHCQWAFLGAMVGDGEGGIATPSSLHVILPRTDYQIV- 195
Query: 118 GKKEDK---LGIRASSTCNVILEDVKIPLDSVL--GKEGEGFKVGLTGID---------- 162
ED +G+R + + ++I++ +P L K +G G
Sbjct: 196 ---EDTWDVIGLRGTGSKDLIVDGAFVPGYRTLNAAKVMDGRAQKEAGRPEPLFNMPYSC 252
Query: 163 CARIGMASQGIGIAQAAFDCAMEYAGKRIAF-GAPILKLQAVQ 204
+G+ + IGI + A C + R+A G I + V
Sbjct: 253 MFPLGITAAVIGITEGALACHIAVQKDRVAITGQKIKEDPYVL 295
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.004
Identities = 39/215 (18%), Positives = 67/215 (31%), Gaps = 62/215 (28%)
Query: 9 LTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESD 68
LT+H G K+ +E Y + G + + T+ S+
Sbjct: 1672 LTIHFGGEKG-------KRIRENYSAMIFETIVDGKLKTEKIFKEINEH--STSYTFRSE 1722
Query: 69 HWVLNGTKSWITNGYEAKAF---------VCIAQADKSKKHKGITAFIIPMDSP--GLSL 117
+L+ T F + KSK +IP D+ G SL
Sbjct: 1723 KGLLSAT-----------QFTQPALTLMEKAAFEDLKSK-------GLIPADATFAGHSL 1764
Query: 118 GKKEDKLGIRA-SSTCNVI-LED-VKIPLDSV------LGKEGEGFKVGLTGIDCARIGM 168
G E A +S +V+ +E V++ V + ++G + I
Sbjct: 1765 G--E----YAALASLADVMSIESLVEV----VFYRGMTMQVAVPRDELGRSNYGMIAINP 1814
Query: 169 ASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAV 203
+Q A +E GKR + ++ V
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGW-----LVEIV 1844
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.12
Identities = 20/131 (15%), Positives = 34/131 (25%), Gaps = 47/131 (35%)
Query: 19 LINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWVLNGTKSW 78
L+ + Q LP V TN P S A + R W +W
Sbjct: 307 LLKYLDCRPQD---LPREVLTTN--------PRRLSIIAESI---RDGLATW-----DNW 347
Query: 79 ITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKE--DKLGIRASSTCNVIL 136
+ K I + + ++ ++ D+L +
Sbjct: 348 -------------KHVNCDKLTTIIESSLNVLEPAEY----RKMFDRLSV--------FP 382
Query: 137 EDVKIPLDSVL 147
IP +L
Sbjct: 383 PSAHIPTI-LL 392
>2ge3_A Probable acetyltransferase; structural GEN PSI, protein structure
initiative, midwest center for struc genomics, MCSG;
HET: ACO; 2.25A {Agrobacterium tumefaciens} SCOP:
d.108.1.1
Length = 170
Score = 28.1 bits (63), Expect = 1.5
Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 10/42 (23%)
Query: 156 VGLTGID------CARIGM----ASQGIGIAQAAFDCAMEYA 187
+ D C +GM A + G+ ++ A
Sbjct: 73 CDIRRQDRATRAHCGTLGMGILPAYRNKGLGARLMRRTLDAA 114
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken
structural genomics/proteomi initiative, RSGI,
structural genomics; HET: A5P; 1.74A {Thermus
thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A*
1uj4_A*
Length = 227
Score = 27.8 bits (63), Expect = 2.2
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 7/31 (22%)
Query: 85 AKAFVCIAQADKSKKHKGITAF-----IIPM 110
AK F+ IA D +KK + I+P
Sbjct: 115 AKEFIVIA--DHTKKVPVLGRGPVPVEIVPF 143
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Length = 225
Score = 27.8 bits (63), Expect = 2.4
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 7/31 (22%)
Query: 85 AKAFVCIAQADKSKKHKGITAF-----IIPM 110
K ++ + D+SK + AF ++
Sbjct: 111 TKDYIWVV--DESKMVDTLGAFRLPVEVVQY 139
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics
center for infectious DI isomerase, ribose isomerase;
HET: R5P; 1.71A {Burkholderia thailandensis} PDB:
3u7j_A*
Length = 239
Score = 27.2 bits (61), Expect = 3.2
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
Query: 85 AKAFVCIAQADKSKKHKGITAF-----IIPM 110
A+ FVCIA D SK+ + F ++PM
Sbjct: 122 AETFVCIA--DASKRVAMLGQFPLPVEVVPM 150
>2vi7_A Acetyltransferase PA1377; GNAT, GCN5 family, N-acetyltransferase,
hypothetical protein; 2.25A {Pseudomonas aeruginosa}
Length = 177
Score = 26.9 bits (60), Expect = 3.6
Identities = 9/42 (21%), Positives = 12/42 (28%), Gaps = 10/42 (23%)
Query: 156 VGLTGID------CARIGM----ASQGIGIAQAAFDCAMEYA 187
L IGM A QG G+ ++ A
Sbjct: 73 ASLEQHPRIRRSHSGSIGMGVAVAWQGKGVGSRLLGELLDIA 114
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119,
center for structu genomics of infectious diseases,
csgid; 2.32A {Francisella tularensis subsp}
Length = 224
Score = 26.7 bits (60), Expect = 4.8
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
Query: 85 AKAFVCIAQADKSKKHKGITAF-----IIPM 110
AK F+CI D+SKK + F +IPM
Sbjct: 116 AKKFICII--DESKKVNTLGNFPLPIEVIPM 144
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative,
MCSG, midwest center for structural genomics; HET: ABF;
1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB:
1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Length = 219
Score = 26.4 bits (59), Expect = 5.5
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 85 AKAFVCIAQADKSKKHKGITAFIIP 109
A+ F+CIA D SK+ + F +P
Sbjct: 110 AEKFICIA--DASKQVDILGKFPLP 132
>2i79_A Acetyltransferase, GNAT family; acetyl coenzyme *A, structur
genomics, PSI-2, protein structure initiative; HET: ACO;
2.10A {Streptococcus pneumoniae}
Length = 172
Score = 26.2 bits (58), Expect = 6.5
Identities = 8/68 (11%), Positives = 17/68 (25%), Gaps = 13/68 (19%)
Query: 133 NVILEDVKIPLDSVLGKEGEGFKVGLTGID---------CARIGMA----SQGIGIAQAA 179
+ + L G G+ I + + G+
Sbjct: 48 IFLNKQASSDNQITLLAFLNGKIAGIVNITADQRKRVRHIGDLFIVIGKRYWNNGLGSLL 107
Query: 180 FDCAMEYA 187
+ A+E+A
Sbjct: 108 LEEAIEWA 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.407
Gapped
Lambda K H
0.267 0.0661 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,085,291
Number of extensions: 180057
Number of successful extensions: 484
Number of sequences better than 10.0: 1
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 53
Length of query: 206
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 117
Effective length of database: 4,216,824
Effective search space: 493368408
Effective search space used: 493368408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)