RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1303
(206 letters)
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 158 bits (401), Expect = 2e-49
Identities = 62/152 (40%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANML 60
G H+ L + + G + QKE YLP + G +G +SEP +GSD +M
Sbjct: 84 ASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMK 143
Query: 61 TTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADK--SKKHKGITAFIIPMDSPGLSLG 118
A K+ +H++LNG K WITNG +A + A+ D +GITAFI+ PG S
Sbjct: 144 LKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTS 203
Query: 119 KKEDKLGIRASSTCNVILEDVKIPLDSVLGKE 150
KK DKLG+R S+TC +I ED KIP ++LG E
Sbjct: 204 KKLDKLGMRGSNTCELIFEDCKIPAANILGHE 235
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 231
Score = 133 bits (335), Expect = 1e-39
Identities = 82/141 (58%), Positives = 110/141 (78%)
Query: 11 VHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHW 70
V+N LY G I KFG+ +QK+ ++ F +G +GCF +SEPG+GSDA TTAR+E D W
Sbjct: 91 VNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSW 150
Query: 71 VLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASS 130
VLNGTK+WITN +EA A V A D+S+++KGI+AF++PM +PGL+LGKKEDKLGIRASS
Sbjct: 151 VLNGTKAWITNSWEASATVVFASTDRSRQNKGISAFLVPMPTPGLTLGKKEDKLGIRASS 210
Query: 131 TCNVILEDVKIPLDSVLGKEG 151
T N+I ED +IP +++LG+ G
Sbjct: 211 TANLIFEDCRIPKENLLGEPG 231
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM
domains {Pig (Sus scrofa) [TaxId: 9823]}
Length = 231
Score = 132 bits (333), Expect = 3e-39
Identities = 48/142 (33%), Positives = 79/142 (55%), Gaps = 3/142 (2%)
Query: 12 HNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWV 71
N L + G +Q++ YL + + + ++EPG+GSD A + T A K+ D ++
Sbjct: 90 ANTLGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYI 149
Query: 72 LNGTKSWITNGYEAKAFVCI---AQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRA 128
+NG K WITNG +A + + K+ K T FI+ D+PG+ +G+KE +G R
Sbjct: 150 INGQKMWITNGGKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRC 209
Query: 129 SSTCNVILEDVKIPLDSVLGKE 150
S T ++ EDV++P ++VL E
Sbjct: 210 SDTRGIVFEDVRVPKENVLTGE 231
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM
domains {Thermus thermophilus [TaxId: 274]}
Length = 227
Score = 130 bits (326), Expect = 2e-38
Identities = 56/140 (40%), Positives = 86/140 (61%)
Query: 11 VHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHW 70
+ + L + GT++QKE +L + + F +SEPG+GSDAA + T A ++ DH+
Sbjct: 88 MASDLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHY 147
Query: 71 VLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASS 130
VLNGTK WI+NG EA+ V A + +HKG+ A ++ +PG K K+G RAS
Sbjct: 148 VLNGTKMWISNGGEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASG 207
Query: 131 TCNVILEDVKIPLDSVLGKE 150
T ++ EDVK+P+++ LG+E
Sbjct: 208 TYELVFEDVKVPVENRLGEE 227
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 233
Score = 128 bits (321), Expect = 2e-37
Identities = 63/142 (44%), Positives = 88/142 (61%), Gaps = 4/142 (2%)
Query: 12 HNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWV 71
HN L G I G++ QKE +LP G +G +G++EPGSGSDAA + T A K W
Sbjct: 91 HNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWR 150
Query: 72 LNGTKSWITNGYEAKAFVCIAQADKSK----KHKGITAFIIPMDSPGLSLGKKEDKLGIR 127
LNGTK +IT G A +V +A+ D KH+GI+AF GL +G+KE+KLG+
Sbjct: 151 LNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLT 210
Query: 128 ASSTCNVILEDVKIPLDSVLGK 149
AS T +ILED+ +P +++LG+
Sbjct: 211 ASDTAQLILEDLFVPEEALLGE 232
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 231
Score = 125 bits (315), Expect = 1e-36
Identities = 49/139 (35%), Positives = 85/139 (61%), Gaps = 1/139 (0%)
Query: 12 HNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESDHWV 71
+ + A +I+ FG ++Q+ + P + ++EPGSGSDAA++LT+A+K+ DH++
Sbjct: 94 IHNMCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYI 153
Query: 72 LNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASST 131
LNG+K++I+ E+ +V + + KGI+ ++ +PGLS GKKE K+G + T
Sbjct: 154 LNGSKAFISGAGESDIYVVMCRTG-GPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPT 212
Query: 132 CNVILEDVKIPLDSVLGKE 150
VI ED +P+ + +G E
Sbjct: 213 RAVIFEDCAVPVANRIGSE 231
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains
{Megasphaera elsdenii [TaxId: 907]}
Length = 232
Score = 121 bits (304), Expect = 4e-35
Identities = 64/140 (45%), Positives = 92/140 (65%), Gaps = 1/140 (0%)
Query: 12 HNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTARKESD-HW 70
L A I +FGT+ QKE +L V+GT +G FG++EP +G+DA+ T A K D +
Sbjct: 93 TVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTY 152
Query: 71 VLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGKKEDKLGIRASS 130
LNG+K +ITNG A ++ A DKSK + GITAFI+ +PG + GKKEDK+GI S
Sbjct: 153 TLNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQ 212
Query: 131 TCNVILEDVKIPLDSVLGKE 150
T ++ +DVK+P +++LG+E
Sbjct: 213 TMELVFQDVKVPAENMLGEE 232
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and
2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 271
Score = 119 bits (300), Expect = 7e-34
Identities = 37/175 (21%), Positives = 70/175 (40%), Gaps = 21/175 (12%)
Query: 4 GTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLTTA 63
+ +H ++ I GT++Q++ +L +GC+ +E G GS+ + TTA
Sbjct: 93 DQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTA 152
Query: 64 RKESDH-------WVLNGTKSWITNGYE-AKAFVCIAQADKSKKHKGITAFIIPMDS--- 112
+ +K W + + V A+ + K GI FI+ + S
Sbjct: 153 TLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLED 212
Query: 113 ----PGLSLGKKEDKLG---IRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG 160
P +++G K+G + ++ + V+IP D +L + KV G
Sbjct: 213 HSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLS---KVTREG 264
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains
1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 267
Score = 117 bits (293), Expect = 5e-33
Identities = 34/174 (19%), Positives = 71/174 (40%), Gaps = 18/174 (10%)
Query: 2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLT 61
G L +H ++ + T +Q+E + + G + +E G G+ + T
Sbjct: 93 HRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLET 152
Query: 62 TARKE--SDHWVLN-----GTKSWITNGYE-AKAFVCIAQADKSKKHKGITAFIIPMDS- 112
TA + + ++LN K W + + + +AQ + G+ AF++P+
Sbjct: 153 TATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREI 212
Query: 113 ------PGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEGEGFKVGLTG 160
PG+++G K G + +++ +IP +++L K +V G
Sbjct: 213 GTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMKYA---QVKPDG 263
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM
domains {Clostridium aminobutyricum [TaxId: 33953]}
Length = 275
Score = 112 bits (282), Expect = 4e-31
Identities = 29/173 (16%), Positives = 50/173 (28%), Gaps = 27/173 (15%)
Query: 1 GCGGTSTILTVHNCLYAGLINKFGTK--KQKETYLPSFVDGTNVGCFGISEPGSGSDAAN 58
C G V + + K+GT K YL + + +++P A
Sbjct: 102 RCVGMDAFNAVFST-TYEIDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAP 160
Query: 59 M--------LTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKS-KKHKGITAFIIP 109
L K D V+ G K+ T + + + + +F P
Sbjct: 161 SAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSHEHIIMPTIAMTEADKDYAVSFACP 220
Query: 110 MDSPGLSLGKKEDKLGIRASST---------------CNVILEDVKIPLDSVL 147
D+ GL + R V+ ++V IP D +
Sbjct: 221 SDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIF 273
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human
(Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 95.1 bits (235), Expect = 8e-25
Identities = 51/152 (33%), Positives = 84/152 (55%), Gaps = 6/152 (3%)
Query: 2 CGGTSTILTVHNCLYAGLINKFGTKKQKETYLPSFVDGTNVGCFGISEPGSGSDAANMLT 61
G + ++V + L I +G+++Q++ YLP G +GCFG++EP SGSD ++M T
Sbjct: 88 DSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMET 147
Query: 62 TARK--ESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGITAFIIPMDSPGLSLGK 119
A + + LNGTK+WITN A FV A+ + I F++ GLS +
Sbjct: 148 RAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGFLLEKGMRGLSAPR 203
Query: 120 KEDKLGIRASSTCNVILEDVKIPLDSVLGKEG 151
+ K +RAS+T +I++ V++P ++VL
Sbjct: 204 IQGKFSLRASATGMIIMDGVEVPEENVLPGAS 235
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus
[TaxId: 1912]}
Length = 210
Score = 76.7 bits (187), Expect = 4e-18
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 44 CFGISEPGSGSDAANMLTTARKESDHWVLNGTKSWITNGYEAKAFVCIAQADKSKKHKGI 103
G SE +GSD + M T R + D V++G K W T + ++
Sbjct: 106 AVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAA----YADHLVVFGLQEDGSG 161
Query: 104 TAFIIPMDSPGLSLGKKEDKLGIRASSTCNVILEDVKIPLDSVLGKEG 151
++P D+PG+ + + G RA+ ++ L+ V++P +VL G
Sbjct: 162 AVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSG 209
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum
[TaxId: 5507]}
Length = 259
Score = 75.6 bits (184), Expect = 2e-17
Identities = 19/132 (14%), Positives = 43/132 (32%), Gaps = 25/132 (18%)
Query: 42 VGCFGISEPGSGS-----DAANMLTTARKESDHWVLNGTKSWITNGYEA-----KAFVCI 91
+ SEP + + TTARK + WV++G K W +N +
Sbjct: 127 LASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVV 186
Query: 92 AQAD---------KSKKHKGITAFIIPMDSPGLS------LGKKEDKLGIRASSTCNVIL 136
+ I ++ ++ + + + + G +S +
Sbjct: 187 CRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRF 246
Query: 137 EDVKIPLDSVLG 148
+ +P +++L
Sbjct: 247 TEFHVPHENLLC 258
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 153
Score = 50.7 bits (120), Expect = 6e-09
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 151 GEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
G+GF L +D RIG+A+ +G+ QAA D A+ YA R AFG PI + + V
Sbjct: 1 GKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVS 54
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 153
Score = 48.1 bits (113), Expect = 6e-08
Identities = 30/52 (57%), Positives = 40/52 (76%)
Query: 153 GFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
GFK+ + +D RIG+ASQ +GIAQA+ DCA++YA R AFGAP+ KLQ +Q
Sbjct: 2 GFKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQNIQ 53
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase,
C-domain {Thermus thermophilus [TaxId: 274]}
Length = 152
Score = 47.2 bits (111), Expect = 1e-07
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 151 GEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
GEGFK+ + ++ RI +A+ +G+A+ A D A +YA +R AFG PI QA+Q
Sbjct: 1 GEGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQ 54
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 153
Score = 46.5 bits (109), Expect = 2e-07
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 151 GEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPI 197
G+GF + + G++ RI +AS +G A A+ ++ R FG P+
Sbjct: 1 GQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPL 47
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain
{Megasphaera elsdenii [TaxId: 907]}
Length = 151
Score = 45.3 bits (106), Expect = 5e-07
Identities = 24/52 (46%), Positives = 38/52 (73%)
Query: 151 GEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQA 202
G+GFK+ + +D RIG+A+Q +GIA+AA A+EY+ +R+ FG P+ K Q+
Sbjct: 1 GKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQS 52
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium
oxysporum [TaxId: 5507]}
Length = 170
Score = 44.9 bits (105), Expect = 1e-06
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 148 GKEGEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAP 196
G + +G T + + + IG A+AAF+ A+ +A G+
Sbjct: 2 GLKAQGLV--ETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSK 48
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces
hygroscopicus [TaxId: 1912]}
Length = 153
Score = 42.7 bits (99), Expect = 5e-06
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 158 LTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFG 194
+ R +A +GI +A A+ +A R FG
Sbjct: 7 AASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFG 43
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase,
C-domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 154
Score = 42.3 bits (98), Expect = 7e-06
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 151 GEGFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
G GFK+ + D R +A+ +G+AQ A D A +YA +R FG + + Q +
Sbjct: 1 GAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGIS 54
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 151
Score = 41.9 bits (97), Expect = 9e-06
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 153 GFKVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAF 193
G V ++G+D R+ +A +G+ QA D + Y R AF
Sbjct: 2 GVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAF 42
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3
and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 189
Score = 41.7 bits (97), Expect = 1e-05
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 7/57 (12%)
Query: 155 KVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGA-------PILKLQAVQ 204
++ + R + + A A Y+ R FGA ++ + Q
Sbjct: 3 QLVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQ 59
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human
(Homo sapiens) [TaxId: 9606]}
Length = 154
Score = 40.7 bits (94), Expect = 3e-05
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 155 KVGLTGIDCARIGMASQGIGIAQAAFDCAMEYAGKRIAFGAPILKLQAVQ 204
++ AR G+A +G ++ A +YA R+ FG P+ + Q +Q
Sbjct: 2 GGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQ 51
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II,
domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 183
Score = 37.5 bits (86), Expect = 4e-04
Identities = 9/48 (18%), Positives = 12/48 (25%), Gaps = 7/48 (14%)
Query: 164 ARIGMASQGIGIAQAAFDCAMEYAGKRIAFGA-------PILKLQAVQ 204
R + A A+ Y+ R IL Q Q
Sbjct: 4 VRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQ 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.407
Gapped
Lambda K H
0.267 0.0441 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 741,987
Number of extensions: 32121
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 26
Length of query: 206
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,295,466
Effective search space: 161933250
Effective search space used: 161933250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.1 bits)