BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13030
(1218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KFX|L Chain L, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|L Chain L, Crystal Structure Of Human M-Calpain Form Ii
Length = 699
Score = 286 bits (733), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 156/429 (36%), Positives = 236/429 (55%), Gaps = 22/429 (5%)
Query: 179 RFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRFRFWHFGEWKE 238
R D G LGD W LAAI+SLTL + L RV+P QSF NY G+F F+FW +GEW E
Sbjct: 93 RTDICQGALGDCWLLAAIASLTLNEEILARVVPLNQSFQE--NYAGIFHFQFWQYGEWVE 150
Query: 239 ILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGG 298
++VDDRLPT G L+++HS +EFW+ALLEKAYAK GCYE L+ GG+TT +D TGG
Sbjct: 151 VVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALS-GGATTEGFEDFTGG 209
Query: 299 IVQSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLRNGLITQHAYSVTGL 358
I + + L L F+++ A+ + + L+ HAYSVTG
Sbjct: 210 IAEWYELKKPPPNL-FKIIQKALQKGSLLGCSIDITSAADSEAITFQKLVKGHAYSVTGA 268
Query: 359 ARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSF 418
V L+R+RNPW EWTG W++ W+ + ++E L+ R DGEFWMSF
Sbjct: 269 EEVESNGSLQKLIRIRNPWGEVEWTGRWNDNCPSWNTIDPEERERLT-RRHEDGEFWMSF 327
Query: 419 EDFAKHFTHLDLVHVGPDDWMAEPALQSKQPWRAVLARRRWRTGYNAGGGPNFVETTSVN 478
DF +H++ L++ ++ PD ++ + + W+ WR G AGG N+ T +N
Sbjct: 328 SDFLRHYSRLEICNLTPDTLTSD----TYKKWKLTKMDGNWRRGSTAGGCRNYPNTFWMN 383
Query: 479 PQFHIQI------PRSSNNKCHVVVSVTQYYETQVDEKQKRTLYAIGFAVYEISSSMT-- 530
PQ+ I++ + C +V + Q + + K ++ IGF +YE+ ++
Sbjct: 384 PQYLIKLEEEDEDEEDGESGCTFLVGLIQKHRRR-QRKMGEDMHTIGFGIYEVPEELSGQ 442
Query: 531 ---RLTPQFVAHTKPLDVTNHSVA-REVVTFFTLPPGDFIVVPQTNVPDCDGKFLLRIFT 586
L+ F + + ++ + REV+ F LPPG++I+VP T P+ DG F +R+F+
Sbjct: 443 TNIHLSKNFFLTNRARERSDTFINLREVLNRFKLPPGEYILVPSTFEPNKDGDFCIRVFS 502
Query: 587 DEQRDFIVV 595
+++ D+ V
Sbjct: 503 EKKADYQAV 511
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 94/190 (49%), Gaps = 26/190 (13%)
Query: 933 VDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGGIV 992
VDDRLPT G L+++HS +EFW+ALLEKAYAK GCYE L+ GG+TT +D TGGI
Sbjct: 153 VDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALS-GGATTEGFEDFTGGIA 211
Query: 993 QSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLRNGLITQHAYSVTGLAR 1052
+ + L L F+++ A+ + + L+ HAYSVTG
Sbjct: 212 EWYELKKPPPNL-FKIIQKALQKGSLLGCSIDITSAADSEAITFQKLVKGHAYSVTGAEE 270
Query: 1053 VRGPLGETPLVRLRNPWARGEWTGPWS------------------------EFFLNFSAY 1088
V L+R+RNPW EWTG W+ EF+++FS +
Sbjct: 271 VESNGSLQKLIRIRNPWGEVEWTGRWNDNCPSWNTIDPEERERLTRRHEDGEFWMSFSDF 330
Query: 1089 LLEKPSLDMC 1098
L L++C
Sbjct: 331 LRHYSRLEIC 340
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Query: 58 NYHAIKRACREKGILYEDPDFPPGPKLLFRNKKAPVQS----LVWMRPHEMCQRPKFYSE 113
+Y A++ C E G L++DP FP P L + P S + W RP E+C P+F
Sbjct: 30 DYEALRNECLEAGTLFQDPSFPAIPSALGFKELGPYSSKTRGMRWKRPTEICADPQFIIG 89
Query: 114 DSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRPKFY 171
+ R D G LGD W LAAI+SLTL + L RV+P QSF NY G+F +F+
Sbjct: 90 GAT--RTDICQGALGDCWLLAAIASLTLNEEILARVVPLNQSFQE--NYAGIFHFQFW 143
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 9/128 (7%)
Query: 704 FQKILRSHWKEKLEGIKNNVLTVLILPDGKSLVAKLLVKYPLEVDHAYSVTGLARVRGPL 763
F+ I ++ K L G ++ + D +++ + LVK HAYSVTG V
Sbjct: 224 FKIIQKALQKGSLLGCSIDITSA---ADSEAITFQKLVK-----GHAYSVTGAEEVESNG 275
Query: 764 GETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHF 823
L+R+RNPW EWTG W++ W+ + ++E L+ R DGEFWMSF DF +H+
Sbjct: 276 SLQKLIRIRNPWGEVEWTGRWNDNCPSWNTIDPEERERLT-RRHEDGEFWMSFSDFLRHY 334
Query: 824 THLDLVHV 831
+ L++ ++
Sbjct: 335 SRLEICNL 342
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 62/127 (48%), Gaps = 14/127 (11%)
Query: 1094 SLDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGAXXXXXXXXXXXXXW 1153
S++ CK ++ + D++ SG+L L + +L +Q ++ +++ +
Sbjct: 572 SIETCKIMVDMLDSDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALE 631
Query: 1154 EAGSTVSNKVLECLVLRFTKNK-VLTWENFIMAMVRLHLAHGHPNDYLFLTLF-MFKKTD 1211
EAG + ++ + +V RF ++ ++ ++NF+ +VRL TLF +FK+ D
Sbjct: 632 EAGFKMPCQLHQVIVARFADDQLIIDFDNFVRCLVRLE------------TLFKIFKQLD 679
Query: 1212 VDQIGEV 1218
+ G +
Sbjct: 680 PENTGTI 686
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 860 TMLEAARISFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAVPR 917
+LE A GCYE L+ GG+TT +D TGGI + + L L F+++ A+ +
Sbjct: 178 ALLEKAYAKINGCYEALS-GGATTEGFEDFTGGIAEWYELKKPPPNL-FKIIQKALQK 233
>pdb|3DF0|A Chain A, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|A Chain A, Structure Of M-Calpain In Complex With Calpastatin
Length = 714
Score = 285 bits (729), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 156/429 (36%), Positives = 236/429 (55%), Gaps = 22/429 (5%)
Query: 179 RFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRFRFWHFGEWKE 238
R D G LGD+W LAAI+SLTL + L RV+P +QSF NY G+F F+FW +GEW E
Sbjct: 94 RTDICQGALGDSWLLAAIASLTLNEEILARVVPLDQSFQE--NYAGIFHFQFWQYGEWVE 151
Query: 239 ILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGG 298
++VDDRLPT G L+++HS +EFW+ALLEKAYAK GCYE L+ GG+TT +D TGG
Sbjct: 152 VVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALS-GGATTEGFEDFTGG 210
Query: 299 IVQSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLRNGLITQHAYSVTGL 358
I + + L L F+++ A+ + + L+ HAYSVTG
Sbjct: 211 IAEWYELRKPPPNL-FKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSVTGA 269
Query: 359 ARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSF 418
V L+R+RNPW + EWTG W++ W+ + + L+ R DGEFWMSF
Sbjct: 270 EEVESSGSLQKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTER-QEDGEFWMSF 328
Query: 419 EDFAKHFTHLDLVHVGPDDWMAEPALQSKQPWRAVLARRRWRTGYNAGGGPNFVETTSVN 478
DF +H++ L++ ++ PD + S + W+ WR G AGG N+ T +N
Sbjct: 329 SDFLRHYSRLEICNLTPDTLTCD----SYKKWKLTKMDGNWRRGSTAGGCRNYPNTFWMN 384
Query: 479 PQFHIQIPRSSNNK------CHVVVSVTQYYETQVDEKQKRTLYAIGFAVYEISSSMT-- 530
PQ+ I++ + C +V + Q + + K ++ IGF +YE+ +T
Sbjct: 385 PQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRR-QRKMGEDMHTIGFGIYEVPEELTGQ 443
Query: 531 ---RLTPQFVAHTKPLDVTNHSVA-REVVTFFTLPPGDFIVVPQTNVPDCDGKFLLRIFT 586
L+ F T+ + ++ + REV+ F LPPG++++VP T P +G F +R+F+
Sbjct: 444 TNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPGEYVLVPSTFEPHKNGDFCIRVFS 503
Query: 587 DEQRDFIVV 595
+++ D+ V
Sbjct: 504 EKKADYQTV 512
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 95/190 (50%), Gaps = 26/190 (13%)
Query: 933 VDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGGIV 992
VDDRLPT G L+++HS +EFW+ALLEKAYAK GCYE L+ GG+TT +D TGGI
Sbjct: 154 VDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALS-GGATTEGFEDFTGGIA 212
Query: 993 QSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLRNGLITQHAYSVTGLAR 1052
+ + L L F+++ A+ + + L+ HAYSVTG
Sbjct: 213 EWYELRKPPPNL-FKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSVTGAEE 271
Query: 1053 VRGPLGETPLVRLRNPWARGEWTGPWS------------------------EFFLNFSAY 1088
V L+R+RNPW + EWTG W+ EF+++FS +
Sbjct: 272 VESSGSLQKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTERQEDGEFWMSFSDF 331
Query: 1089 LLEKPSLDMC 1098
L L++C
Sbjct: 332 LRHYSRLEIC 341
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 65/118 (55%), Gaps = 8/118 (6%)
Query: 58 NYHAIKRACREKGILYEDPDFPPGPKLLFRNKKAPVQS----LVWMRPHEMCQRPKFYSE 113
+Y ++ C E G L++DP FP P L + P S + W RP E+C P+F
Sbjct: 31 DYETLRNECLEAGALFQDPSFPALPSSLGFKELGPYSSKTRGIEWKRPTEICADPQFIIG 90
Query: 114 DSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRPKFY 171
+ R D G LGD+W LAAI+SLTL + L RV+P +QSF NY G+F +F+
Sbjct: 91 GAT--RTDICQGALGDSWLLAAIASLTLNEEILARVVPLDQSFQE--NYAGIFHFQFW 144
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 9/128 (7%)
Query: 704 FQKILRSHWKEKLEGIKNNVLTVLILPDGKSLVAKLLVKYPLEVDHAYSVTGLARVRGPL 763
F+ I ++ K L G ++ + D +++ + LVK HAYSVTG V
Sbjct: 225 FKIIQKALEKGSLLGCSIDITSA---ADSEAVTYQKLVK-----GHAYSVTGAEEVESSG 276
Query: 764 GETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHF 823
L+R+RNPW + EWTG W++ W+ + + L+ R DGEFWMSF DF +H+
Sbjct: 277 SLQKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTER-QEDGEFWMSFSDFLRHY 335
Query: 824 THLDLVHV 831
+ L++ ++
Sbjct: 336 SRLEICNL 343
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 1094 SLDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGAXXXXXXXXXXXXXW 1153
S++ CK ++ + D + SG+L L + +L +Q ++ +++ +
Sbjct: 573 SIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALE 632
Query: 1154 EAGSTVSNKVLECLVLRFTKNK-VLTWENFIMAMVRLHL 1191
EAG + ++ + +V RF ++ ++ ++NF+ +VRL +
Sbjct: 633 EAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEI 671
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 860 TMLEAARISFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAVPR 917
+LE A GCYE L+ GG+TT +D TGGI + + L L F+++ A+ +
Sbjct: 179 ALLEKAYAKINGCYEALS-GGATTEGFEDFTGGIAEWYELRKPPPNL-FKIIQKALEK 234
>pdb|1DF0|A Chain A, Crystal Structure Of M-Calpain
Length = 700
Score = 285 bits (728), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 156/429 (36%), Positives = 236/429 (55%), Gaps = 22/429 (5%)
Query: 179 RFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRFRFWHFGEWKE 238
R D G LGD+W LAAI+SLTL + L RV+P +QSF NY G+F F+FW +GEW E
Sbjct: 94 RTDICQGALGDSWLLAAIASLTLNEEILARVVPLDQSFQE--NYAGIFHFQFWQYGEWVE 151
Query: 239 ILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGG 298
++VDDRLPT G L+++HS +EFW+ALLEKAYAK GCYE L+ GG+TT +D TGG
Sbjct: 152 VVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALS-GGATTEGFEDFTGG 210
Query: 299 IVQSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLRNGLITQHAYSVTGL 358
I + + L L F+++ A+ + + L+ HAYSVTG
Sbjct: 211 IAEWYELRKPPPNL-FKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSVTGA 269
Query: 359 ARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSF 418
V L+R+RNPW + EWTG W++ W+ + + L+ R DGEFWMSF
Sbjct: 270 EEVESSGSLQKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTER-QEDGEFWMSF 328
Query: 419 EDFAKHFTHLDLVHVGPDDWMAEPALQSKQPWRAVLARRRWRTGYNAGGGPNFVETTSVN 478
DF +H++ L++ ++ PD + S + W+ WR G AGG N+ T +N
Sbjct: 329 SDFLRHYSRLEICNLTPDTLTCD----SYKKWKLTKMDGNWRRGSTAGGCRNYPNTFWMN 384
Query: 479 PQFHIQIPRSSNNK------CHVVVSVTQYYETQVDEKQKRTLYAIGFAVYEISSSMT-- 530
PQ+ I++ + C +V + Q + + K ++ IGF +YE+ +T
Sbjct: 385 PQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRR-QRKMGEDMHTIGFGIYEVPEELTGQ 443
Query: 531 ---RLTPQFVAHTKPLDVTNHSV-AREVVTFFTLPPGDFIVVPQTNVPDCDGKFLLRIFT 586
L+ F T+ + ++ + REV+ F LPPG++++VP T P +G F +R+F+
Sbjct: 444 TNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPGEYVLVPSTFEPHKNGDFCIRVFS 503
Query: 587 DEQRDFIVV 595
+++ D+ V
Sbjct: 504 EKKADYQTV 512
Score = 120 bits (300), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 95/190 (50%), Gaps = 26/190 (13%)
Query: 933 VDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGGIV 992
VDDRLPT G L+++HS +EFW+ALLEKAYAK GCYE L+ GG+TT +D TGGI
Sbjct: 154 VDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALS-GGATTEGFEDFTGGIA 212
Query: 993 QSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLRNGLITQHAYSVTGLAR 1052
+ + L L F+++ A+ + + L+ HAYSVTG
Sbjct: 213 EWYELRKPPPNL-FKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSVTGAEE 271
Query: 1053 VRGPLGETPLVRLRNPWARGEWTGPWS------------------------EFFLNFSAY 1088
V L+R+RNPW + EWTG W+ EF+++FS +
Sbjct: 272 VESSGSLQKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTERQEDGEFWMSFSDF 331
Query: 1089 LLEKPSLDMC 1098
L L++C
Sbjct: 332 LRHYSRLEIC 341
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 65/118 (55%), Gaps = 8/118 (6%)
Query: 58 NYHAIKRACREKGILYEDPDFPPGPKLLFRNKKAPVQS----LVWMRPHEMCQRPKFYSE 113
+Y ++ C E G L++DP FP P L + P S + W RP E+C P+F
Sbjct: 31 DYETLRNECLEAGALFQDPSFPALPSSLGFKELGPYSSKTRGIEWKRPTEICADPQFIIG 90
Query: 114 DSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRPKFY 171
+ R D G LGD+W LAAI+SLTL + L RV+P +QSF NY G+F +F+
Sbjct: 91 GAT--RTDICQGALGDSWLLAAIASLTLNEEILARVVPLDQSFQE--NYAGIFHFQFW 144
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 9/128 (7%)
Query: 704 FQKILRSHWKEKLEGIKNNVLTVLILPDGKSLVAKLLVKYPLEVDHAYSVTGLARVRGPL 763
F+ I ++ K L G ++ + D +++ + LVK HAYSVTG V
Sbjct: 225 FKIIQKALEKGSLLGCSIDITSA---ADSEAVTYQKLVK-----GHAYSVTGAEEVESSG 276
Query: 764 GETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHF 823
L+R+RNPW + EWTG W++ W+ + + L+ R DGEFWMSF DF +H+
Sbjct: 277 SLQKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTER-QEDGEFWMSFSDFLRHY 335
Query: 824 THLDLVHV 831
+ L++ ++
Sbjct: 336 SRLEICNL 343
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 1094 SLDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGAXXXXXXXXXXXXXW 1153
S++ CK ++ + D + SG+L L + +L +Q ++ +++ +
Sbjct: 573 SIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALE 632
Query: 1154 EAGSTVSNKVLECLVLRFTKNK-VLTWENFIMAMVRLHL 1191
EAG + ++ + +V RF ++ ++ ++NF+ +VRL +
Sbjct: 633 EAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEI 671
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 860 TMLEAARISFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAVPR 917
+LE A GCYE L+ GG+TT +D TGGI + + L L F+++ A+ +
Sbjct: 179 ALLEKAYAKINGCYEALS-GGATTEGFEDFTGGIAEWYELRKPPPNL-FKIIQKALEK 234
>pdb|1U5I|A Chain A, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
Length = 700
Score = 284 bits (727), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 156/429 (36%), Positives = 236/429 (55%), Gaps = 22/429 (5%)
Query: 179 RFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRFRFWHFGEWKE 238
R D G LGD+W LAAI+SLTL + L RV+P +QSF NY G+F F+FW +GEW E
Sbjct: 94 RTDICQGALGDSWLLAAIASLTLNEEILARVVPLDQSFQE--NYAGIFHFQFWQYGEWVE 151
Query: 239 ILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGG 298
++VDDRLPT G L+++HS +EFW+ALLEKAYAK GCYE L+ GG+TT +D TGG
Sbjct: 152 VVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALS-GGATTEGFEDFTGG 210
Query: 299 IVQSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLRNGLITQHAYSVTGL 358
I + + L L F+++ A+ + + L+ HAYSVTG
Sbjct: 211 IAEWYELRKPPPNL-FKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSVTGA 269
Query: 359 ARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSF 418
V L+R+RNPW + EWTG W++ W+ + + L+ R DGEFWMSF
Sbjct: 270 EEVESSGSLQKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTER-QEDGEFWMSF 328
Query: 419 EDFAKHFTHLDLVHVGPDDWMAEPALQSKQPWRAVLARRRWRTGYNAGGGPNFVETTSVN 478
DF +H++ L++ ++ PD + S + W+ WR G AGG N+ T +N
Sbjct: 329 SDFLRHYSRLEICNLTPDTLTCD----SYKKWKLTKMDGNWRRGSTAGGCRNYPNTFWMN 384
Query: 479 PQFHIQIPRSSNNK------CHVVVSVTQYYETQVDEKQKRTLYAIGFAVYEISSSMT-- 530
PQ+ I++ + C +V + Q + + K ++ IGF +YE+ +T
Sbjct: 385 PQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRR-QRKMGEDMHTIGFGIYEVPEELTGQ 443
Query: 531 ---RLTPQFVAHTKPLDVTNHSV-AREVVTFFTLPPGDFIVVPQTNVPDCDGKFLLRIFT 586
L+ F T+ + ++ + REV+ F LPPG++++VP T P +G F +R+F+
Sbjct: 444 TNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPGEYVLVPSTFEPHKNGDFCIRVFS 503
Query: 587 DEQRDFIVV 595
+++ D+ V
Sbjct: 504 EKKADYQTV 512
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 95/190 (50%), Gaps = 26/190 (13%)
Query: 933 VDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGGIV 992
VDDRLPT G L+++HS +EFW+ALLEKAYAK GCYE L+ GG+TT +D TGGI
Sbjct: 154 VDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALS-GGATTEGFEDFTGGIA 212
Query: 993 QSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLRNGLITQHAYSVTGLAR 1052
+ + L L F+++ A+ + + L+ HAYSVTG
Sbjct: 213 EWYELRKPPPNL-FKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSVTGAEE 271
Query: 1053 VRGPLGETPLVRLRNPWARGEWTGPWS------------------------EFFLNFSAY 1088
V L+R+RNPW + EWTG W+ EF+++FS +
Sbjct: 272 VESSGSLQKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTERQEDGEFWMSFSDF 331
Query: 1089 LLEKPSLDMC 1098
L L++C
Sbjct: 332 LRHYSRLEIC 341
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 65/118 (55%), Gaps = 8/118 (6%)
Query: 58 NYHAIKRACREKGILYEDPDFPPGPKLLFRNKKAPVQS----LVWMRPHEMCQRPKFYSE 113
+Y ++ C E G L++DP FP P L + P S + W RP E+C P+F
Sbjct: 31 DYETLRNECLEAGALFQDPSFPALPSSLGFKELGPYSSKTRGIEWKRPTEICADPQFIIG 90
Query: 114 DSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRPKFY 171
+ R D G LGD+W LAAI+SLTL + L RV+P +QSF NY G+F +F+
Sbjct: 91 GAT--RTDICQGALGDSWLLAAIASLTLNEEILARVVPLDQSFQE--NYAGIFHFQFW 144
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 9/128 (7%)
Query: 704 FQKILRSHWKEKLEGIKNNVLTVLILPDGKSLVAKLLVKYPLEVDHAYSVTGLARVRGPL 763
F+ I ++ K L G ++ + D +++ + LVK HAYSVTG V
Sbjct: 225 FKIIQKALEKGSLLGCSIDITSA---ADSEAVTYQKLVK-----GHAYSVTGAEEVESSG 276
Query: 764 GETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHF 823
L+R+RNPW + EWTG W++ W+ + + L+ R DGEFWMSF DF +H+
Sbjct: 277 SLQKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTER-QEDGEFWMSFSDFLRHY 335
Query: 824 THLDLVHV 831
+ L++ ++
Sbjct: 336 SRLEICNL 343
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 1094 SLDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGAXXXXXXXXXXXXXW 1153
S++ CK ++ + D + SG+L L + +L +Q ++ +++ +
Sbjct: 573 SIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALE 632
Query: 1154 EAGSTVSNKVLECLVLRFTKNK-VLTWENFIMAMVRLHL 1191
EAG + ++ + +V RF ++ ++ ++NF+ +VRL +
Sbjct: 633 EAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEI 671
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 860 TMLEAARISFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAVPR 917
+LE A GCYE L+ GG+TT +D TGGI + + L L F+++ A+ +
Sbjct: 179 ALLEKAYAKINGCYEALS-GGATTEGFEDFTGGIAEWYELRKPPPNL-FKIIQKALEK 234
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 281 bits (720), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 188/567 (33%), Positives = 270/567 (47%), Gaps = 96/567 (16%)
Query: 58 NYHAIKRACREKGILYEDPDFPPGPKLLFRNKKAPVQS----LVWMRPHEMCQRPKFYSE 113
+Y ++ C E G L++DP FPP L + P S + W RP
Sbjct: 31 DYETLRNECLEAGALFQDPAFPPVSHSLGFKELGPNSSKTYGIKWKRP------------ 78
Query: 114 DSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRPKFYSE 173
+ L P+F+ D AT
Sbjct: 79 -----------------------TELLSNPQFI---------VDGAT------------- 93
Query: 174 DSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRFRFWHF 233
R D G LGD+W LAAI+SLTL L RV+P QSF Y G+F F+ W F
Sbjct: 94 -----RTDICQGALGDSWLLAAIASLTLNETILHRVVPYGQSFQEG--YAGIFHFQLWQF 146
Query: 234 GEWKEILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQ 293
GEW +++VDD LPT G+LV++HS EFW+ALLEKAYAK G YE L+ GG T+ A +
Sbjct: 147 GEWVDVVVDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALS-GGCTSEAFE 205
Query: 294 DLTGGIVQSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLRNGLITQHAY 353
D TGG+ + + L L +Q++ A+ R + + L+ HAY
Sbjct: 206 DFTGGVTEWYDLQKAPSDL-YQIILKALERGSLLGCSINISDIRDLEAITFKNLVRGHAY 264
Query: 354 SVTGLARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGE 413
SVT +V L+R+RNPW EW GPWS+ S+EW+ + ++E L +++ DGE
Sbjct: 265 SVTDAKQVTYQGQRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVKME-DGE 323
Query: 414 FWMSFEDFAKHFTHLDLVHVGPDDWMAEPALQSK--QPWRAVLARRRWRTGYNAGGGPNF 471
FWMSF DF + FT L++ ++ PD AL+S+ + W WR G AGG N+
Sbjct: 324 FWMSFRDFIREFTKLEICNLTPD------ALKSRTLRNWNTTFYEGTWRRGSTAGGCRNY 377
Query: 472 VETTSVNPQFHIQIPR--------SSNNKCHVVVSVTQYYETQVDEKQKRTLYAIGFAVY 523
T VNPQF I++ S + C ++++ Q + + + R + IGFAVY
Sbjct: 378 PATFWVNPQFKIRLEEVDDADDYDSRESGCSFLLALMQKHRRRE-RRFGRDMETIGFAVY 436
Query: 524 ----EISSSMTRLTPQFVAHTKPLDVTNHSVA-REVVTFFTLPPGDFIVVPQTNVPDCDG 578
E++ L F + H + REV LPPG++IVVP T P+ +G
Sbjct: 437 QVPRELAGQPVHLKRDFFLANASRAQSEHFINLREVSNRIRLPPGEYIVVPSTFEPNKEG 496
Query: 579 KFLLRIFTDEQ---RDFIVVPQTNVPD 602
FLLR F++++ ++ Q N+PD
Sbjct: 497 DFLLRFFSEKKAGTQELDDQIQANLPD 523
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 93/190 (48%), Gaps = 26/190 (13%)
Query: 933 VDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGGIV 992
VDD LPT G+LV++HS EFW+ALLEKAYAK G YE L+ GG T+ A +D TGG+
Sbjct: 154 VDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALS-GGCTSEAFEDFTGGVT 212
Query: 993 QSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLRNGLITQHAYSVTGLAR 1052
+ + L L +Q++ A+ R + + L+ HAYSVT +
Sbjct: 213 EWYDLQKAPSDL-YQIILKALERGSLLGCSINISDIRDLEAITFKNLVRGHAYSVTDAKQ 271
Query: 1053 VRGPLGETPLVRLRNPWARGEWTGPWS------------------------EFFLNFSAY 1088
V L+R+RNPW EW GPWS EF+++F +
Sbjct: 272 VTYQGQRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVKMEDGEFWMSFRDF 331
Query: 1089 LLEKPSLDMC 1098
+ E L++C
Sbjct: 332 IREFTKLEIC 341
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 704 FQKILRSHWKEKLEGIKNNVLTVLILPDGKSLVAKLLVKYPLEVDHAYSVTGLARVRGPL 763
+Q IL++ + L G N+ + D +++ K LV+ HAYSVT +V
Sbjct: 225 YQIILKALERGSLLGCSINISDI---RDLEAITFKNLVR-----GHAYSVTDAKQVTYQG 276
Query: 764 GETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHF 823
L+R+RNPW EW GPWS+ S+EW+ + ++E L +++ DGEFWMSF DF + F
Sbjct: 277 QRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVKME-DGEFWMSFRDFIREF 335
Query: 824 THLDLVHV 831
T L++ ++
Sbjct: 336 TKLEICNL 343
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 1094 SLDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGAXXXXXXXXXXXXXW 1153
SL+ C+S++ L D + +G+L L++ +L + ++ + F+KF+
Sbjct: 575 SLESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLTIFRKFDLDKSGSMSAYEMRMAIE 634
Query: 1154 EAGSTVSNKVLECLVLRFTKNK-VLTWENFIMAMVRLHL 1191
AG + ++ + +V RF ++ ++ ++NF+ +VRL +
Sbjct: 635 AAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEI 673
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 1095 LDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGAXXXXXXXXXXXXXWE 1154
+D C+S++ + D++ +G+L + L + ++ W+ +++FE
Sbjct: 773 IDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQGIYKRFETDRSGTIGSNELPGAFEA 832
Query: 1155 AGSTVSNKVLECLVLRFT-KNKVLTWENFIMAMVRL 1189
AG ++ + ++ R++ + + ++NFI +VRL
Sbjct: 833 AGFHLNQHIYSMIIRRYSDETGNMDFDNFISCLVRL 868
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 860 TMLEAARISFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAVPR 917
+LE A G YE L+ GG T+ A +D TGG+ + + L L +Q++ A+ R
Sbjct: 179 ALLEKAYAKVNGSYEALS-GGCTSEAFEDFTGGVTEWYDLQKAPSDL-YQIILKALER 234
>pdb|2P0R|A Chain A, Structure Of Human Calpain 9 In Complex With Leupeptin
pdb|2P0R|B Chain B, Structure Of Human Calpain 9 In Complex With Leupeptin
Length = 333
Score = 224 bits (572), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/258 (44%), Positives = 157/258 (60%), Gaps = 4/258 (1%)
Query: 179 RFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRFRFWHFGEWKE 238
R D G LGD W LAAI+SLTL K L RVIP +QSF P Y G+F F+FW EW +
Sbjct: 79 RTDICQGELGDCWLLAAIASLTLNQKALARVIPQDQSFGPG--YAGIFHFQFWQHSEWLD 136
Query: 239 ILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGG 298
+++DDRLPTF+ RLV+LHS + EFW+ALLEKAYAK G YE L GGS A++D TGG
Sbjct: 137 VVIDDRLPTFRDRLVFLHSADHNEFWSALLEKAYAKLNGSYEALK-GGSAIEAMEDFTGG 195
Query: 299 IVQSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLRNGLITQHAYSVTGL 358
+ ++F T + +++L A+ R + + R GLI HAYSVTG+
Sbjct: 196 VAETFQ-TKEAPENFYEILEKALKRGSLLGCFIDTRSAAESEARTPFGLIKGHAYSVTGI 254
Query: 359 ARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSF 418
+V L+R+RNPW + EW G WS+ S EW + +++ L +DGEFWM+F
Sbjct: 255 DQVSFRGQRIELIRIRNPWGQVEWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGEFWMAF 314
Query: 419 EDFAKHFTHLDLVHVGPD 436
+DF HF +++ ++ PD
Sbjct: 315 KDFKAHFDKVEICNLTPD 332
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 88/148 (59%), Gaps = 2/148 (1%)
Query: 933 VDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGGIV 992
+DDRLPTF+ RLV+LHS + EFW+ALLEKAYAK G YE L GGS A++D TGG+
Sbjct: 139 IDDRLPTFRDRLVFLHSADHNEFWSALLEKAYAKLNGSYEALK-GGSAIEAMEDFTGGVA 197
Query: 993 QSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLRNGLITQHAYSVTGLAR 1052
++F T + +++L A+ R + + R GLI HAYSVTG+ +
Sbjct: 198 ETFQ-TKEAPENFYEILEKALKRGSLLGCFIDTRSAAESEARTPFGLIKGHAYSVTGIDQ 256
Query: 1053 VRGPLGETPLVRLRNPWARGEWTGPWSE 1080
V L+R+RNPW + EW G WS+
Sbjct: 257 VSFRGQRIELIRIRNPWGQVEWNGSWSD 284
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 52/83 (62%)
Query: 749 HAYSVTGLARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSN 808
HAYSVTG+ +V L+R+RNPW + EW G WS+ S EW + +++ L +
Sbjct: 247 HAYSVTGIDQVSFRGQRIELIRIRNPWGQVEWNGSWSDSSPEWRSVGPAEQKRLCHTALD 306
Query: 809 DGEFWMSFEDFAKHFTHLDLVHV 831
DGEFWM+F+DF HF +++ ++
Sbjct: 307 DGEFWMAFKDFKAHFDKVEICNL 329
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 860 TMLEAARISFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAVPR 917
+LE A G YE L GGS A++D TGG+ ++F T + +++L A+ R
Sbjct: 164 ALLEKAYAKLNGSYEALK-GGSAIEAMEDFTGGVAETFQ-TKEAPENFYEILEKALKR 219
>pdb|1ZIV|A Chain A, Catalytic Domain Of Human Calpain-9
Length = 339
Score = 224 bits (571), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/258 (44%), Positives = 157/258 (60%), Gaps = 4/258 (1%)
Query: 179 RFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRFRFWHFGEWKE 238
R D G LGD W LAAI+SLTL K L RVIP +QSF P Y G+F F+FW EW +
Sbjct: 78 RTDICQGELGDCWLLAAIASLTLNQKALARVIPQDQSFGPG--YAGIFHFQFWQHSEWLD 135
Query: 239 ILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGG 298
+++DDRLPTF+ RLV+LHS + EFW+ALLEKAYAK G YE L GGS A++D TGG
Sbjct: 136 VVIDDRLPTFRDRLVFLHSADHNEFWSALLEKAYAKLNGSYEALK-GGSAIEAMEDFTGG 194
Query: 299 IVQSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLRNGLITQHAYSVTGL 358
+ ++F T + +++L A+ R + + R GLI HAYSVTG+
Sbjct: 195 VAETFQ-TKEAPENFYEILEKALKRGSLLGCFIDTRSAAESEARTPFGLIKGHAYSVTGI 253
Query: 359 ARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSF 418
+V L+R+RNPW + EW G WS+ S EW + +++ L +DGEFWM+F
Sbjct: 254 DQVSFRGQRIELIRIRNPWGQVEWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGEFWMAF 313
Query: 419 EDFAKHFTHLDLVHVGPD 436
+DF HF +++ ++ PD
Sbjct: 314 KDFKAHFDKVEICNLTPD 331
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 88/148 (59%), Gaps = 2/148 (1%)
Query: 933 VDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGGIV 992
+DDRLPTF+ RLV+LHS + EFW+ALLEKAYAK G YE L GGS A++D TGG+
Sbjct: 138 IDDRLPTFRDRLVFLHSADHNEFWSALLEKAYAKLNGSYEALK-GGSAIEAMEDFTGGVA 196
Query: 993 QSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLRNGLITQHAYSVTGLAR 1052
++F T + +++L A+ R + + R GLI HAYSVTG+ +
Sbjct: 197 ETFQ-TKEAPENFYEILEKALKRGSLLGCFIDTRSAAESEARTPFGLIKGHAYSVTGIDQ 255
Query: 1053 VRGPLGETPLVRLRNPWARGEWTGPWSE 1080
V L+R+RNPW + EW G WS+
Sbjct: 256 VSFRGQRIELIRIRNPWGQVEWNGSWSD 283
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 52/83 (62%)
Query: 749 HAYSVTGLARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSN 808
HAYSVTG+ +V L+R+RNPW + EW G WS+ S EW + +++ L +
Sbjct: 246 HAYSVTGIDQVSFRGQRIELIRIRNPWGQVEWNGSWSDSSPEWRSVGPAEQKRLCHTALD 305
Query: 809 DGEFWMSFEDFAKHFTHLDLVHV 831
DGEFWM+F+DF HF +++ ++
Sbjct: 306 DGEFWMAFKDFKAHFDKVEICNL 328
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 860 TMLEAARISFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAVPR 917
+LE A G YE L GGS A++D TGG+ ++F T + +++L A+ R
Sbjct: 163 ALLEKAYAKLNGSYEALK-GGSAIEAMEDFTGGVAETFQ-TKEAPENFYEILEKALKR 218
>pdb|1MDW|A Chain A, Crystal Structure Of Calcium-bound Protease Core Of
Calpain Ii Reveals The Basis For Intrinsic Inactivation
pdb|1MDW|B Chain B, Crystal Structure Of Calcium-bound Protease Core Of
Calpain Ii Reveals The Basis For Intrinsic Inactivation
Length = 328
Score = 218 bits (556), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/258 (43%), Positives = 154/258 (59%), Gaps = 5/258 (1%)
Query: 179 RFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRFRFWHFGEWKE 238
R D G LGD+W LAAI+SLTL + L RV+P +QSF NY G+F F+FW +GEW E
Sbjct: 76 RTDICQGALGDSWLLAAIASLTLNEEILARVVPLDQSFQ--ENYAGIFHFQFWQYGEWVE 133
Query: 239 ILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGG 298
++VDDRLPT G L+++HS +EFW+ALLEKAYAK GCYE L+ GG+TT +D TGG
Sbjct: 134 VVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALS-GGATTEGFEDFTGG 192
Query: 299 IVQSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLRNGLITQHAYSVTGL 358
I + + L L F+++ A+ + + L+ HAYSVTG
Sbjct: 193 IAEWYELRKPPPNL-FKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSVTGA 251
Query: 359 ARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSF 418
V L+R+RNPW + EWTG W++ W+ + + L+ R DGEFWMSF
Sbjct: 252 EEVESSGSLQKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTER-QEDGEFWMSF 310
Query: 419 EDFAKHFTHLDLVHVGPD 436
DF +H++ L++ ++ PD
Sbjct: 311 SDFLRHYSRLEICNLTPD 328
Score = 119 bits (299), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 95/190 (50%), Gaps = 26/190 (13%)
Query: 933 VDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGGIV 992
VDDRLPT G L+++HS +EFW+ALLEKAYAK GCYE L+ GG+TT +D TGGI
Sbjct: 136 VDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALS-GGATTEGFEDFTGGIA 194
Query: 993 QSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLRNGLITQHAYSVTGLAR 1052
+ + L L F+++ A+ + + L+ HAYSVTG
Sbjct: 195 EWYELRKPPPNL-FKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSVTGAEE 253
Query: 1053 VRGPLGETPLVRLRNPWARGEWTGPWS------------------------EFFLNFSAY 1088
V L+R+RNPW + EWTG W+ EF+++FS +
Sbjct: 254 VESSGSLQKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTERQEDGEFWMSFSDF 313
Query: 1089 LLEKPSLDMC 1098
L L++C
Sbjct: 314 LRHYSRLEIC 323
Score = 86.3 bits (212), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 65/118 (55%), Gaps = 8/118 (6%)
Query: 58 NYHAIKRACREKGILYEDPDFPPGPKLLFRNKKAPVQS----LVWMRPHEMCQRPKFYSE 113
+Y ++ C E G L++DP FP P L + P S + W RP E+C P+F
Sbjct: 13 DYETLRNECLEAGALFQDPSFPALPSSLGFKELGPYSSKTRGIEWKRPTEICADPQFIIG 72
Query: 114 DSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRPKFY 171
+ R D G LGD+W LAAI+SLTL + L RV+P +QSF NY G+F +F+
Sbjct: 73 GAT--RTDICQGALGDSWLLAAIASLTLNEEILARVVPLDQSFQ--ENYAGIFHFQFW 126
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 9/128 (7%)
Query: 704 FQKILRSHWKEKLEGIKNNVLTVLILPDGKSLVAKLLVKYPLEVDHAYSVTGLARVRGPL 763
F+ I ++ K L G ++ + D +++ + LVK HAYSVTG V
Sbjct: 207 FKIIQKALEKGSLLGCSIDITSA---ADSEAVTYQKLVK-----GHAYSVTGAEEVESSG 258
Query: 764 GETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHF 823
L+R+RNPW + EWTG W++ W+ + + L+ R DGEFWMSF DF +H+
Sbjct: 259 SLQKLIRIRNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTER-QEDGEFWMSFSDFLRHY 317
Query: 824 THLDLVHV 831
+ L++ ++
Sbjct: 318 SRLEICNL 325
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 860 TMLEAARISFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAVPR 917
+LE A GCYE L+ GG+TT +D TGGI + + L L F+++ A+ +
Sbjct: 161 ALLEKAYAKINGCYEALS-GGATTEGFEDFTGGIAEWYELRKPPPNL-FKIIQKALEK 216
>pdb|2NQA|A Chain A, Catalytic Domain Of Human Calpain 8
pdb|2NQA|B Chain B, Catalytic Domain Of Human Calpain 8
Length = 326
Score = 216 bits (550), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 113/258 (43%), Positives = 151/258 (58%), Gaps = 5/258 (1%)
Query: 179 RFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRFRFWHFGEWKE 238
R D G LGD W LAAI+SLTL + L RV+P +Q F NY G+F F+FW +GEW E
Sbjct: 74 RTDIXQGGLGDCWLLAAIASLTLNEELLYRVVPRDQDFQ--ENYAGIFHFQFWQYGEWVE 131
Query: 239 ILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGG 298
+++DDRLPT G+L++LHS EFW+ALLEKAYAK G YE L GGST +D TGG
Sbjct: 132 VVIDDRLPTKNGQLLFLHSEQGNEFWSALLEKAYAKLNGXYEALA-GGSTVEGFEDFTGG 190
Query: 299 IVQSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLRNGLITQHAYSVTGL 358
I + + L L +Q++ A+ + + L+ HAYSVTG+
Sbjct: 191 ISEFYDLKKPPANL-YQIIRKALXAGSLLGCSIDVYSAAEAEAITSQKLVKSHAYSVTGV 249
Query: 359 ARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSF 418
V L+RLRNPW EW+G WS+ + EW+ + R KE L +V DGEFWMS
Sbjct: 250 EEVNFQGHPEKLIRLRNPWGEVEWSGAWSDDAPEWNHIDPRRKEELDKKV-EDGEFWMSL 308
Query: 419 EDFAKHFTHLDLVHVGPD 436
DF + F+ L++ ++ PD
Sbjct: 309 SDFVRQFSRLEICNLSPD 326
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Query: 933 VDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGGIV 992
+DDRLPT G+L++LHS EFW+ALLEKAYAK G YE L GGST +D TGGI
Sbjct: 134 IDDRLPTKNGQLLFLHSEQGNEFWSALLEKAYAKLNGXYEALA-GGSTVEGFEDFTGGIS 192
Query: 993 QSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLRNGLITQHAYSVTGLAR 1052
+ + L L +Q++ A+ + + L+ HAYSVTG+
Sbjct: 193 EFYDLKKPPANL-YQIIRKALXAGSLLGCSIDVYSAAEAEAITSQKLVKSHAYSVTGVEE 251
Query: 1053 VRGPLGETPLVRLRNPWARGEWTGPWSE 1080
V L+RLRNPW EW+G WS+
Sbjct: 252 VNFQGHPEKLIRLRNPWGEVEWSGAWSD 279
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 8/118 (6%)
Query: 58 NYHAIKRACREKGILYEDPDFPPGPKLLFRNKKAP----VQSLVWMRPHEMCQRPKFYSE 113
++ +++ C + G+L++DP+FP P L P Q ++W RP E+ P+F
Sbjct: 11 DFKTLRQQCLDSGVLFKDPEFPAXPSALGYKDLGPGSPQTQGIIWKRPTELXPSPQFIVG 70
Query: 114 DSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRPKFY 171
+ R D G LGD W LAAI+SLTL + L RV+P +Q F NY G+F +F+
Sbjct: 71 GAT--RTDIXQGGLGDCWLLAAIASLTLNEELLYRVVPRDQDFQ--ENYAGIFHFQFW 124
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 6/108 (5%)
Query: 724 LTVLILPDGKSLVAKLLVKYPLEVDHAYSVTGLARVRGPLGETPLVRLRNPWARGEWTGP 783
+ V + +++ ++ LVK HAYSVTG+ V L+RLRNPW EW+G
Sbjct: 222 IDVYSAAEAEAITSQKLVK-----SHAYSVTGVEEVNFQGHPEKLIRLRNPWGEVEWSGA 276
Query: 784 WSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHFTHLDLVHV 831
WS+ + EW+ + R KE L +V DGEFWMS DF + F+ L++ ++
Sbjct: 277 WSDDAPEWNHIDPRRKEELDKKV-EDGEFWMSLSDFVRQFSRLEICNL 323
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 860 TMLEAARISFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAV 915
+LE A G YE L GGST +D TGGI + + L L +Q++ A+
Sbjct: 159 ALLEKAYAKLNGXYEALA-GGSTVEGFEDFTGGISEFYDLKKPPANL-YQIIRKAL 212
>pdb|1KXR|A Chain A, Crystal Structure Of Calcium-Bound Protease Core Of
Calpain I
pdb|1KXR|B Chain B, Crystal Structure Of Calcium-Bound Protease Core Of
Calpain I
Length = 339
Score = 214 bits (545), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/272 (41%), Positives = 159/272 (58%), Gaps = 7/272 (2%)
Query: 165 LFRPKFYSEDSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCG 224
L P+F + + R D G LGD+W LAAI+SLTL L RV+P QSF Y G
Sbjct: 67 LSNPQFIVDGAT--RTDICQGALGDSWLLAAIASLTLNETILHRVVPYGQSFQEG--YAG 122
Query: 225 LFRFRFWHFGEWKEILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTH 284
+F F+ W FGEW +++VDD LPT G+LV++HS EFW+ALLEKAYAK G YE L+
Sbjct: 123 IFHFQLWQFGEWVDVVVDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALS- 181
Query: 285 GGSTTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLR 344
GG T+ A +D TGG+ + + L L +Q++ A+ R + +
Sbjct: 182 GGCTSEAFEDFTGGVTEWYDLQKAPSDL-YQIILKALERGSLLGCSINISDIRDLEAITF 240
Query: 345 NGLITQHAYSVTGLARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELL 404
L+ HAYSVT +V L+R+RNPW EW GPWS+ S+EW+ + ++E L
Sbjct: 241 KNLVRGHAYSVTDAKQVTYQGQRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQL 300
Query: 405 SIRVSNDGEFWMSFEDFAKHFTHLDLVHVGPD 436
+++ DGEFWMSF DF + FT L++ ++ PD
Sbjct: 301 RVKME-DGEFWMSFRDFIREFTKLEICNLTPD 331
Score = 110 bits (275), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 93/190 (48%), Gaps = 26/190 (13%)
Query: 933 VDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGGIV 992
VDD LPT G+LV++HS EFW+ALLEKAYAK G YE L+ GG T+ A +D TGG+
Sbjct: 139 VDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALS-GGCTSEAFEDFTGGVT 197
Query: 993 QSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLRNGLITQHAYSVTGLAR 1052
+ + L L +Q++ A+ R + + L+ HAYSVT +
Sbjct: 198 EWYDLQKAPSDL-YQIILKALERGSLLGCSINISDIRDLEAITFKNLVRGHAYSVTDAKQ 256
Query: 1053 VRGPLGETPLVRLRNPWARGEWTGPWS------------------------EFFLNFSAY 1088
V L+R+RNPW EW GPWS EF+++F +
Sbjct: 257 VTYQGQRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVKMEDGEFWMSFRDF 316
Query: 1089 LLEKPSLDMC 1098
+ E L++C
Sbjct: 317 IREFTKLEIC 326
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 704 FQKILRSHWKEKLEGIKNNVLTVLILPDGKSLVAKLLVKYPLEVDHAYSVTGLARVRGPL 763
+Q IL++ + L G N+ + D +++ K LV+ HAYSVT +V
Sbjct: 210 YQIILKALERGSLLGCSINISDI---RDLEAITFKNLVR-----GHAYSVTDAKQVTYQG 261
Query: 764 GETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHF 823
L+R+RNPW EW GPWS+ S+EW+ + ++E L +++ DGEFWMSF DF + F
Sbjct: 262 QRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVKME-DGEFWMSFRDFIREF 320
Query: 824 THLDLVHV 831
T L++ ++
Sbjct: 321 TKLEICNL 328
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Query: 58 NYHAIKRACREKGILYEDPDFPPGPKLLFRNKKAPVQS----LVWMRPHEMCQRPKFYSE 113
+Y ++ C + G+L++D FPP L + P S + W RP E+ P+F +
Sbjct: 16 DYENLRARCLQNGVLFQDDAFPPVSHSLGFKELGPNSSKTYGIKWKRPTELLSNPQFIVD 75
Query: 114 DSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLF 166
+ R D G LGD+W LAAI+SLTL L RV+P QSF Y G+F
Sbjct: 76 GAT--RTDICQGALGDSWLLAAIASLTLNETILHRVVPYGQSFQEG--YAGIF 124
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 860 TMLEAARISFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAVPR 917
+LE A G YE L+ GG T+ A +D TGG+ + + L L +Q++ A+ R
Sbjct: 164 ALLEKAYAKVNGSYEALS-GGCTSEAFEDFTGGVTEWYDLQKAPSDL-YQIILKALER 219
>pdb|1TL9|A Chain A, High Resolution Crystal Structure Of Calpain I Protease
Core In Complex With Leupeptin
pdb|1TLO|A Chain A, High Resolution Crystal Structure Of Calpain I Protease
Core In Complex With E64
pdb|2G8E|A Chain A, Calpain 1 Proteolytic Core In Complex With Snj-1715, A
Cyclic Hemiacetal-Type Inhibitor
pdb|2G8J|A Chain A, Calpain 1 Proteolytic Core In Complex With Snj-1945, A
Alpha-Ketoamide-Type Inhibitor.
pdb|2NQG|A Chain A, Calpain 1 Proteolytic Core Inactivated By Wr18(s,s), An
Epoxysuccinyl-type Inhibitor.
pdb|2NQI|A Chain A, Calpain 1 Proteolytic Core Inactivated By Wr13(R,R), An
Epoxysuccinyl-Type Inhibitor.
pdb|2R9C|A Chain A, Calpain 1 Proteolytic Core Inactivated By Zlak-3001, An
Alpha- Ketoamide
pdb|2R9F|A Chain A, Calpain 1 Proteolytic Core Inactivated By Zlak-3002, An
Alpha- Ketoamide
Length = 339
Score = 214 bits (544), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/272 (41%), Positives = 158/272 (58%), Gaps = 7/272 (2%)
Query: 165 LFRPKFYSEDSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCG 224
L P+F + + R D G LGD W LAAI+SLTL L RV+P QSF Y G
Sbjct: 67 LSNPQFIVDGAT--RTDICQGALGDCWLLAAIASLTLNETILHRVVPYGQSFQEG--YAG 122
Query: 225 LFRFRFWHFGEWKEILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTH 284
+F F+ W FGEW +++VDD LPT G+LV++HS EFW+ALLEKAYAK G YE L+
Sbjct: 123 IFHFQLWQFGEWVDVVVDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALS- 181
Query: 285 GGSTTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLR 344
GG T+ A +D TGG+ + + L L +Q++ A+ R + +
Sbjct: 182 GGCTSEAFEDFTGGVTEWYDLQKAPSDL-YQIILKALERGSLLGCSINISDIRDLEAITF 240
Query: 345 NGLITQHAYSVTGLARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELL 404
L+ HAYSVT +V L+R+RNPW EW GPWS+ S+EW+ + ++E L
Sbjct: 241 KNLVRGHAYSVTDAKQVTYQGQRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQL 300
Query: 405 SIRVSNDGEFWMSFEDFAKHFTHLDLVHVGPD 436
+++ DGEFWMSF DF + FT L++ ++ PD
Sbjct: 301 RVKME-DGEFWMSFRDFIREFTKLEICNLTPD 331
Score = 110 bits (274), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 93/190 (48%), Gaps = 26/190 (13%)
Query: 933 VDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGGIV 992
VDD LPT G+LV++HS EFW+ALLEKAYAK G YE L+ GG T+ A +D TGG+
Sbjct: 139 VDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALS-GGCTSEAFEDFTGGVT 197
Query: 993 QSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLRNGLITQHAYSVTGLAR 1052
+ + L L +Q++ A+ R + + L+ HAYSVT +
Sbjct: 198 EWYDLQKAPSDL-YQIILKALERGSLLGCSINISDIRDLEAITFKNLVRGHAYSVTDAKQ 256
Query: 1053 VRGPLGETPLVRLRNPWARGEWTGPWS------------------------EFFLNFSAY 1088
V L+R+RNPW EW GPWS EF+++F +
Sbjct: 257 VTYQGQRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVKMEDGEFWMSFRDF 316
Query: 1089 LLEKPSLDMC 1098
+ E L++C
Sbjct: 317 IREFTKLEIC 326
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 704 FQKILRSHWKEKLEGIKNNVLTVLILPDGKSLVAKLLVKYPLEVDHAYSVTGLARVRGPL 763
+Q IL++ + L G N+ + D +++ K LV+ HAYSVT +V
Sbjct: 210 YQIILKALERGSLLGCSINISDI---RDLEAITFKNLVR-----GHAYSVTDAKQVTYQG 261
Query: 764 GETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHF 823
L+R+RNPW EW GPWS+ S+EW+ + ++E L +++ DGEFWMSF DF + F
Sbjct: 262 QRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVKME-DGEFWMSFRDFIREF 320
Query: 824 THLDLVHV 831
T L++ ++
Sbjct: 321 TKLEICNL 328
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 58/113 (51%), Gaps = 8/113 (7%)
Query: 58 NYHAIKRACREKGILYEDPDFPPGPKLLFRNKKAPVQS----LVWMRPHEMCQRPKFYSE 113
+Y ++ C + G+L++D FPP L + P S + W RP E+ P+F +
Sbjct: 16 DYENLRARCLQNGVLFQDDAFPPVSHSLGFKELGPNSSKTYGIKWKRPTELLSNPQFIVD 75
Query: 114 DSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLF 166
+ R D G LGD W LAAI+SLTL L RV+P QSF Y G+F
Sbjct: 76 GAT--RTDICQGALGDCWLLAAIASLTLNETILHRVVPYGQSFQEG--YAGIF 124
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 860 TMLEAARISFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAVPR 917
+LE A G YE L+ GG T+ A +D TGG+ + + L L +Q++ A+ R
Sbjct: 164 ALLEKAYAKVNGSYEALS-GGCTSEAFEDFTGGVTEWYDLQKAPSDL-YQIILKALER 219
>pdb|2ARY|A Chain A, Catalytic Domain Of Human Calpain-1
pdb|2ARY|B Chain B, Catalytic Domain Of Human Calpain-1
Length = 351
Score = 210 bits (535), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 113/272 (41%), Positives = 156/272 (57%), Gaps = 7/272 (2%)
Query: 165 LFRPKFYSEDSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCG 224
L P+F + + R D G LGD W LAAI+SLTL L RV+P QSF Y G
Sbjct: 83 LSNPQFIVDGAT--RTDICQGALGDCWLLAAIASLTLNDTLLHRVVPHGQSFQ--NGYAG 138
Query: 225 LFRFRFWHFGEWKEILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTH 284
+F F+ W FGEW +++VDD LP G+LV++HS EFW+ALLEKAYAK G YE L+
Sbjct: 139 IFHFQLWQFGEWVDVVVDDLLPIKDGKLVFVHSAEGNEFWSALLEKAYAKVNGSYEALS- 197
Query: 285 GGSTTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLR 344
GGST+ +D TGG+ + + L L +Q++ A+ R +
Sbjct: 198 GGSTSEGFEDFTGGVTEWYELRKAPSDL-YQIILKALERGSLLGCSIDISSVLDMEAITF 256
Query: 345 NGLITQHAYSVTGLARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELL 404
L+ HAYSVTG +V L+R+RNPW EWTG WS+ S EW+ + +++ L
Sbjct: 257 KKLVKGHAYSVTGAKQVNYRGQVVSLIRMRNPWGEVEWTGAWSDSSSEWNNVDPYERDQL 316
Query: 405 SIRVSNDGEFWMSFEDFAKHFTHLDLVHVGPD 436
+++ DGEFWMSF DF + FT L++ ++ PD
Sbjct: 317 RVKM-EDGEFWMSFRDFMREFTRLEICNLTPD 347
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 92/190 (48%), Gaps = 26/190 (13%)
Query: 933 VDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGGIV 992
VDD LP G+LV++HS EFW+ALLEKAYAK G YE L+ GGST+ +D TGG+
Sbjct: 155 VDDLLPIKDGKLVFVHSAEGNEFWSALLEKAYAKVNGSYEALS-GGSTSEGFEDFTGGVT 213
Query: 993 QSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLRNGLITQHAYSVTGLAR 1052
+ + L L +Q++ A+ R + L+ HAYSVTG +
Sbjct: 214 EWYELRKAPSDL-YQIILKALERGSLLGCSIDISSVLDMEAITFKKLVKGHAYSVTGAKQ 272
Query: 1053 VRGPLGETPLVRLRNPWARGEWTGPWS------------------------EFFLNFSAY 1088
V L+R+RNPW EWTG WS EF+++F +
Sbjct: 273 VNYRGQVVSLIRMRNPWGEVEWTGAWSDSSSEWNNVDPYERDQLRVKMEDGEFWMSFRDF 332
Query: 1089 LLEKPSLDMC 1098
+ E L++C
Sbjct: 333 MREFTRLEIC 342
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 76/128 (59%), Gaps = 9/128 (7%)
Query: 704 FQKILRSHWKEKLEGIKNNVLTVLILPDGKSLVAKLLVKYPLEVDHAYSVTGLARVRGPL 763
+Q IL++ + L G ++ +VL D +++ K LVK HAYSVTG +V
Sbjct: 226 YQIILKALERGSLLGCSIDISSVL---DMEAITFKKLVK-----GHAYSVTGAKQVNYRG 277
Query: 764 GETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHF 823
L+R+RNPW EWTG WS+ S EW+ + +++ L +++ DGEFWMSF DF + F
Sbjct: 278 QVVSLIRMRNPWGEVEWTGAWSDSSSEWNNVDPYERDQLRVKM-EDGEFWMSFRDFMREF 336
Query: 824 THLDLVHV 831
T L++ ++
Sbjct: 337 TRLEICNL 344
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 58 NYHAIKRACREKGILYEDPDFPPGPKLLFRNKKAPVQS----LVWMRPHEMCQRPKFYSE 113
+Y ++ C + G L+ D FPP P+ L P S + W RP E+ P+F +
Sbjct: 32 DYEQLRVRCLQSGTLFRDEAFPPVPQSLGYKDLGPNSSKTYGIKWKRPTELLSNPQFIVD 91
Query: 114 DSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLF 166
+ R D G LGD W LAAI+SLTL L RV+P QSF Y G+F
Sbjct: 92 GAT--RTDICQGALGDCWLLAAIASLTLNDTLLHRVVPHGQSFQ--NGYAGIF 140
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 860 TMLEAARISFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAVPR 917
+LE A G YE L+ GGST+ +D TGG+ + + L L +Q++ A+ R
Sbjct: 180 ALLEKAYAKVNGSYEALS-GGSTSEGFEDFTGGVTEWYELRKAPSDL-YQIILKALER 235
>pdb|1ZCM|A Chain A, Human Calpain Protease Core Inhibited By Zllych2f
Length = 321
Score = 209 bits (532), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 130/380 (34%), Positives = 180/380 (47%), Gaps = 71/380 (18%)
Query: 58 NYHAIKRACREKGILYEDPDFPPGPKLLFRNKKAPVQS----LVWMRPHEMCQRPKFYSE 113
+Y ++ C + G L+ D FPP P+ L P S + W RP
Sbjct: 9 DYEQLRVRCLQSGTLFRDEAFPPVPQSLGYKDLGPNSSKTYGIKWKRP------------ 56
Query: 114 DSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRPKFYSE 173
+ L P+F+ D AT
Sbjct: 57 -----------------------TELLSNPQFI---------VDGAT------------- 71
Query: 174 DSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRFRFWHF 233
R D G LGD W LAAI+SLTL L RV+P QSF Y G+F F+ W F
Sbjct: 72 -----RTDICQGALGDCWLLAAIASLTLNDTLLHRVVPHGQSFQ--NGYAGIFHFQLWQF 124
Query: 234 GEWKEILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQ 293
GEW +++VDD LP G+LV++HS EFW+ALLEKAYAK G YE L+ GGST+ A +
Sbjct: 125 GEWVDVVVDDLLPIKDGKLVFVHSAEGNEFWSALLEKAYAKVNGSYEALS-GGSTSEAFE 183
Query: 294 DLTGGIVQSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLRNGLITQHAY 353
D TGG+ + + L L +Q++ A+ R + L+ HAY
Sbjct: 184 DFTGGVTEWYELRKAPSDL-YQIILKALERGSLLGCSIDISSVLDMEAITFKKLVKGHAY 242
Query: 354 SVTGLARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGE 413
SVTG +V L+R+RNPW EWTG WS+ S EW+ + +++ L +++ DGE
Sbjct: 243 SVTGAKQVNYRGQVVSLIRMRNPWGEVEWTGAWSDSSSEWNNVDPYERDQLRVKM-EDGE 301
Query: 414 FWMSFEDFAKHFTHLDLVHV 433
FWMSF DF + FT L++ ++
Sbjct: 302 FWMSFRDFMREFTRLEICNL 321
Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 93/190 (48%), Gaps = 26/190 (13%)
Query: 933 VDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGGIV 992
VDD LP G+LV++HS EFW+ALLEKAYAK G YE L+ GGST+ A +D TGG+
Sbjct: 132 VDDLLPIKDGKLVFVHSAEGNEFWSALLEKAYAKVNGSYEALS-GGSTSEAFEDFTGGVT 190
Query: 993 QSFALTNQDRYLTFQVLNSAVPRXXXXXXXXXXXXXQKRQLRLRNGLITQHAYSVTGLAR 1052
+ + L L +Q++ A+ R + L+ HAYSVTG +
Sbjct: 191 EWYELRKAPSDL-YQIILKALERGSLLGCSIDISSVLDMEAITFKKLVKGHAYSVTGAKQ 249
Query: 1053 VRGPLGETPLVRLRNPWARGEWTGPWS------------------------EFFLNFSAY 1088
V L+R+RNPW EWTG WS EF+++F +
Sbjct: 250 VNYRGQVVSLIRMRNPWGEVEWTGAWSDSSSEWNNVDPYERDQLRVKMEDGEFWMSFRDF 309
Query: 1089 LLEKPSLDMC 1098
+ E L++C
Sbjct: 310 MREFTRLEIC 319
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 76/128 (59%), Gaps = 9/128 (7%)
Query: 704 FQKILRSHWKEKLEGIKNNVLTVLILPDGKSLVAKLLVKYPLEVDHAYSVTGLARVRGPL 763
+Q IL++ + L G ++ +VL D +++ K LVK HAYSVTG +V
Sbjct: 203 YQIILKALERGSLLGCSIDISSVL---DMEAITFKKLVK-----GHAYSVTGAKQVNYRG 254
Query: 764 GETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHF 823
L+R+RNPW EWTG WS+ S EW+ + +++ L +++ DGEFWMSF DF + F
Sbjct: 255 QVVSLIRMRNPWGEVEWTGAWSDSSSEWNNVDPYERDQLRVKM-EDGEFWMSFRDFMREF 313
Query: 824 THLDLVHV 831
T L++ ++
Sbjct: 314 TRLEICNL 321
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 860 TMLEAARISFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAVPR 917
+LE A G YE L+ GGST+ A +D TGG+ + + L L +Q++ A+ R
Sbjct: 157 ALLEKAYAKVNGSYEALS-GGSTSEAFEDFTGGVTEWYELRKAPSDL-YQIILKALER 212
>pdb|1KFX|S Chain S, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|S Chain S, Crystal Structure Of Human M-Calpain Form Ii
Length = 184
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/125 (20%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 1095 LDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGAXXXXXXXXXXXXXWE 1154
+D C+S++ + D++ +G+L + L + ++ W+ +++F+
Sbjct: 57 IDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEA 116
Query: 1155 AGSTVSNKVLECLVLRFT-KNKVLTWENFIMAMVRLHLAHGHPNDYLFLTLFMFKKTDVD 1213
AG ++ + ++ R++ ++ + ++NFI +VRL D +F FK D D
Sbjct: 117 AGFHLNEHLYNMIIRRYSDESGNMDFDNFISCLVRL--------DAMFRA---FKSLDKD 165
Query: 1214 QIGEV 1218
G++
Sbjct: 166 GTGQI 170
>pdb|1ALW|A Chain A, Inhibitor And Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALW|B Chain B, Inhibitor And Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALV|A Chain A, Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALV|B Chain B, Calcium Bound Domain Vi Of Porcine Calpain
pdb|1NX0|A Chain A, Structure Of Calpain Domain 6 In Complex With Calpastatin
Dic
pdb|1NX0|B Chain B, Structure Of Calpain Domain 6 In Complex With Calpastatin
Dic
pdb|1NX1|A Chain A, Calpain Domain Vi Complexed With Calpastatin Inhibitory
Domain C (Dic)
pdb|1NX1|B Chain B, Calpain Domain Vi Complexed With Calpastatin Inhibitory
Domain C (Dic)
pdb|1NX2|A Chain A, Calpain Domain Vi
pdb|1NX3|A Chain A, Calpain Domain Vi In Complex With The Inhibitor Pd150606
Length = 173
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/125 (20%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 1095 LDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGAXXXXXXXXXXXXXWE 1154
+D C+S++ + D++ +G+L + L + ++ W+ +++F+
Sbjct: 46 IDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEA 105
Query: 1155 AGSTVSNKVLECLVLRFT-KNKVLTWENFIMAMVRLHLAHGHPNDYLFLTLFMFKKTDVD 1213
AG ++ + ++ R++ + + ++NFI +VRL D +F FK D D
Sbjct: 106 AGFHLNEHLYSMIIRRYSDEGGNMDFDNFISCLVRL--------DAMFRA---FKSLDKD 154
Query: 1214 QIGEV 1218
G++
Sbjct: 155 GTGQI 159
>pdb|1DF0|B Chain B, Crystal Structure Of M-Calpain
pdb|1U5I|B Chain B, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10 Thr
pdb|3DF0|B Chain B, Calcium-Dependent Complex Between M-Calpain And Calpastatin
pdb|3BOW|B Chain B, Structure Of M-Calpain In Complex With Calpastatin
Length = 184
Score = 36.6 bits (83), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/96 (18%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 1095 LDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGAXXXXXXXXXXXXXWE 1154
+D C+S++ + D++ +G+L + L + ++ W+ +++F+
Sbjct: 57 IDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQGIYKRFDTDRSGTIGSNELPGAFEA 116
Query: 1155 AGSTVSNKVLECLVLRFT-KNKVLTWENFIMAMVRL 1189
AG ++ + ++ R++ + + ++NFI +VRL
Sbjct: 117 AGFHLNQHIYSMIIRRYSDETGNMDFDNFISCLVRL 152
>pdb|1NP8|A Chain A, 18-K C-Terminally Trunucated Small Subunit Of Calpain
pdb|1NP8|B Chain B, 18-K C-Terminally Trunucated Small Subunit Of Calpain
Length = 159
Score = 36.6 bits (83), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/96 (18%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 1095 LDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGAXXXXXXXXXXXXXWE 1154
+D C+S++ + D++ +G+L + L + ++ W+ +++F+
Sbjct: 53 IDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQGIYKRFDTDRSGTIGSNELPGAFEA 112
Query: 1155 AGSTVSNKVLECLVLRFT-KNKVLTWENFIMAMVRL 1189
AG ++ + ++ R++ + + ++NFI +VRL
Sbjct: 113 AGFHLNQHIYSMIIRRYSDETGNMDFDNFISCLVRL 148
>pdb|1AJ5|A Chain A, Calpain Domain Vi Apo
pdb|1AJ5|B Chain B, Calpain Domain Vi Apo
Length = 173
Score = 36.6 bits (83), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 18/96 (18%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 1095 LDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGAXXXXXXXXXXXXXWE 1154
+D C+S++ + D++ +G+L + L + ++ W+ +++F+
Sbjct: 46 IDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQGIYKRFDTDRSGTIGSNELPGAFEA 105
Query: 1155 AGSTVSNKVLECLVLRFT-KNKVLTWENFIMAMVRL 1189
AG ++ + ++ R++ + + ++NFI +VRL
Sbjct: 106 AGFHLNQHIYSMIIRRYSDETGNMDFDNFISCLVRL 141
>pdb|1JUO|A Chain A, Crystal Structure Of Calcium-Free Human Sorcin: A Member Of
The Penta-Ef-Hand Protein Family
pdb|1JUO|B Chain B, Crystal Structure Of Calcium-Free Human Sorcin: A Member Of
The Penta-Ef-Hand Protein Family
Length = 198
Score = 36.6 bits (83), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 1092 KP-SLDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGAXXXXXXXXXXX 1150
KP +L+ C+ ++ + D ++SG + + L +L WR F F+
Sbjct: 68 KPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQK 127
Query: 1151 XXWEAGSTVSNKVLECLVLRFTKNKVLTWENFIMAMVRL 1189
G +S + + + R++ N +T++++I V+L
Sbjct: 128 ALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIACCVKL 166
>pdb|2JC2|A Chain A, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|B Chain B, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|C Chain C, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|D Chain D, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
Length = 198
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 1092 KP-SLDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGAXXXXXXXXXXX 1150
KP +L+ C+ ++ + D ++SG + + L +L WR F +
Sbjct: 68 KPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISLDTDRSGTVDPQELQK 127
Query: 1151 XXWEAGSTVSNKVLECLVLRFTKNKVLTWENFIMAMVRL 1189
G +S + + + R++ N +T++++I V+L
Sbjct: 128 ALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIACCVKL 166
>pdb|1AVP|A Chain A, Structure Of Human Adenovirus 2 Proteinase With Its 11
Amino Acid Cofactor
pdb|1NLN|A Chain A, Crystal Structure Of Human Adenovirus 2 Proteinase With
Its 11 Amino Acid Cofactor At 1.6 Angstrom Resolution
Length = 204
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 14/93 (15%)
Query: 155 SFDPATNYCGLFRPKFYSEDSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQ 214
+++P + C LF P +S+ L+ + FE L S++ +P DR I E+
Sbjct: 59 AWNPRSKTCYLFEPFGFSDQRLKQVYQFEYES------LLRRSAIASSP---DRCITLEK 109
Query: 215 SFD----PATNYCGLFRFRFWH-FGEWKEILVD 242
S P + CGLF F H F W + +D
Sbjct: 110 STQSVQGPNSAACGLFCCMFLHAFANWPQTPMD 142
>pdb|1GJY|A Chain A, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
pdb|1GJY|B Chain B, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
pdb|1GJY|C Chain C, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
pdb|1GJY|D Chain D, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
Length = 167
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 1092 KP-SLDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGAXXXXXXXXXXX 1150
KP +L+ C+ ++ + D ++SG + + L +L WR F F+
Sbjct: 37 KPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQK 96
Query: 1151 XXWEAGSTVSNKVLECLVLRFTKNKVLTWENFIMAMVRLH 1190
G ++ + + + R++ + +T++++I V+L
Sbjct: 97 ALTTMGFRLNPQTVNSIAKRYSTSGKITFDDYIACCVKLR 136
>pdb|2W3P|A Chain A, Boxc Crystal Structure
pdb|2W3P|B Chain B, Boxc Crystal Structure
Length = 556
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 508 DEKQKRTLYAIGFAVYEISSSMTRLTPQFVAHTKPLDVTNHSVAREV 554
DE+ TL + F +Y + + +RL +F T+PLD + + +
Sbjct: 412 DEEPAITLSEVNFGLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAI 458
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 29.6 bits (65), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 737 AKLLVKYPLEVDHAYSVTGLARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGL 794
A + + E A + LAR GP E P+V + W EWT S++ GL
Sbjct: 347 ADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGCYAASFDLGGL 404
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,271,197
Number of Sequences: 62578
Number of extensions: 1606249
Number of successful extensions: 3130
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2897
Number of HSP's gapped (non-prelim): 106
length of query: 1218
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1108
effective length of database: 8,089,757
effective search space: 8963450756
effective search space used: 8963450756
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)