Query psy13030
Match_columns 1218
No_of_seqs 778 out of 3200
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 17:37:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0045|consensus 100.0 1.5E-96 3E-101 888.5 33.4 515 56-713 10-536 (612)
2 smart00230 CysPc Calpain-like 100.0 8.4E-74 1.8E-78 655.3 28.0 312 59-439 1-315 (318)
3 PF00648 Peptidase_C2: Calpain 100.0 3.1E-69 6.7E-74 616.8 18.4 296 72-434 1-298 (298)
4 cd00044 CysPc Calpains, domain 100.0 1E-66 2.3E-71 598.9 24.9 300 62-432 2-315 (315)
5 smart00230 CysPc Calpain-like 100.0 7.4E-49 1.6E-53 449.5 18.0 263 829-1106 17-315 (318)
6 PF00648 Peptidase_C2: Calpain 100.0 1.6E-47 3.5E-52 437.8 12.1 256 832-1100 7-297 (298)
7 cd00044 CysPc Calpains, domain 100.0 4.9E-46 1.1E-50 427.8 17.8 243 845-1099 36-315 (315)
8 KOG0045|consensus 100.0 2.9E-44 6.3E-49 434.7 16.4 263 828-1103 28-333 (612)
9 cd00214 Calpain_III Calpain, s 100.0 4E-29 8.8E-34 256.2 15.0 145 449-621 2-149 (150)
10 smart00720 calpain_III calpain 99.9 1.2E-27 2.7E-32 243.9 14.7 140 450-618 1-141 (143)
11 PF01067 Calpain_III: Calpain 99.9 1E-24 2.2E-29 223.6 12.1 143 449-619 1-146 (147)
12 KOG0037|consensus 99.9 1.7E-22 3.6E-27 209.1 7.2 115 1093-1218 91-207 (221)
13 KOG0037|consensus 99.7 7.8E-18 1.7E-22 174.6 -1.7 136 643-828 56-191 (221)
14 KOG0027|consensus 99.4 8.3E-13 1.8E-17 136.1 6.6 92 1097-1188 45-149 (151)
15 COG5126 FRQ1 Ca2+-binding prot 99.3 2.8E-12 6.1E-17 130.2 9.3 92 1123-1218 17-109 (160)
16 COG5126 FRQ1 Ca2+-binding prot 99.3 1.7E-12 3.7E-17 131.8 7.0 89 1099-1188 59-156 (160)
17 KOG0027|consensus 99.3 5.7E-12 1.2E-16 129.9 9.4 95 1124-1218 6-102 (151)
18 KOG0028|consensus 99.1 1.1E-10 2.5E-15 115.5 8.5 90 1125-1218 32-123 (172)
19 KOG0028|consensus 99.1 1E-10 2.2E-15 115.9 7.3 90 1098-1187 71-169 (172)
20 cd05022 S-100A13 S-100A13: S-1 99.0 6.4E-10 1.4E-14 103.3 7.3 68 1124-1191 6-78 (89)
21 KOG0030|consensus 99.0 1E-09 2.2E-14 106.3 6.6 77 1111-1187 64-150 (152)
22 PTZ00183 centrin; Provisional 98.9 1.2E-09 2.6E-14 112.9 6.2 93 1096-1188 53-154 (158)
23 PTZ00184 calmodulin; Provision 98.9 2.2E-09 4.9E-14 109.5 7.0 92 1097-1188 48-148 (149)
24 KOG0031|consensus 98.9 6.1E-09 1.3E-13 102.6 8.9 89 1124-1218 30-118 (171)
25 cd05027 S-100B S-100B: S-100B 98.9 9.6E-09 2.1E-13 95.6 9.0 68 1124-1191 6-82 (88)
26 PTZ00183 centrin; Provisional 98.7 3.9E-08 8.4E-13 101.6 9.5 114 1100-1218 21-143 (158)
27 PF13499 EF-hand_7: EF-hand do 98.7 2.3E-08 4.9E-13 87.8 5.9 60 1127-1186 1-66 (66)
28 cd05031 S-100A10_like S-100A10 98.7 5.4E-08 1.2E-12 92.0 8.2 69 1123-1191 5-82 (94)
29 cd05025 S-100A1 S-100A1: S-100 98.7 6.9E-08 1.5E-12 90.9 8.6 68 1124-1191 7-83 (92)
30 cd05029 S-100A6 S-100A6: S-100 98.7 8.6E-08 1.9E-12 89.2 9.0 69 1124-1192 8-83 (88)
31 cd05026 S-100Z S-100Z: S-100Z 98.7 7.6E-08 1.7E-12 90.7 8.5 69 1124-1192 8-85 (93)
32 PTZ00184 calmodulin; Provision 98.6 7.7E-08 1.7E-12 98.1 8.7 61 1126-1186 11-73 (149)
33 KOG0030|consensus 98.6 8.8E-08 1.9E-12 93.1 8.0 91 1125-1218 10-105 (152)
34 PLN02964 phosphatidylserine de 98.5 1.5E-07 3.2E-12 115.8 8.5 86 1124-1218 141-232 (644)
35 smart00027 EH Eps15 homology d 98.5 2.9E-07 6.3E-12 87.4 8.5 66 1124-1191 8-75 (96)
36 cd00052 EH Eps15 homology doma 98.5 2.4E-07 5.3E-12 81.2 7.4 61 1128-1190 1-63 (67)
37 KOG0031|consensus 98.5 3.1E-07 6.7E-12 90.8 8.3 81 1107-1187 75-164 (171)
38 cd00213 S-100 S-100: S-100 dom 98.5 3.7E-07 8E-12 85.1 7.8 67 1124-1190 6-81 (88)
39 KOG0034|consensus 98.4 4.4E-07 9.6E-12 95.8 6.5 89 1101-1189 71-176 (187)
40 cd05023 S-100A11 S-100A11: S-1 98.4 1.1E-06 2.4E-11 81.9 8.5 68 1124-1191 7-83 (89)
41 PF13833 EF-hand_8: EF-hand do 98.3 1E-06 2.3E-11 74.1 5.6 50 1139-1188 1-53 (54)
42 KOG0036|consensus 98.2 1.6E-06 3.4E-11 98.2 6.9 86 1100-1185 55-143 (463)
43 KOG0044|consensus 98.2 3.8E-06 8.3E-11 88.8 8.6 112 1107-1218 38-164 (193)
44 PF14658 EF-hand_9: EF-hand do 98.1 4.1E-06 9E-11 72.3 5.9 58 1130-1187 2-63 (66)
45 cd00051 EFh EF-hand, calcium b 98.1 7.7E-06 1.7E-10 69.3 7.2 59 1128-1186 2-62 (63)
46 KOG0044|consensus 98.1 2.9E-06 6.2E-11 89.8 5.4 94 1097-1190 65-177 (193)
47 cd05030 calgranulins Calgranul 98.1 1.1E-05 2.3E-10 75.3 7.7 68 1124-1191 6-82 (88)
48 KOG0038|consensus 97.9 1.4E-05 3.1E-10 78.1 5.1 85 1104-1188 79-177 (189)
49 PLN02964 phosphatidylserine de 97.6 5.4E-05 1.2E-09 93.7 6.0 86 1099-1188 146-243 (644)
50 KOG0041|consensus 97.6 0.00018 3.8E-09 74.4 8.6 64 1124-1187 97-162 (244)
51 cd00252 SPARC_EC SPARC_EC; ext 97.6 0.00015 3.1E-09 71.1 7.4 59 1125-1187 47-107 (116)
52 PF00036 EF-hand_1: EF hand; 97.6 5.7E-05 1.2E-09 54.9 2.7 29 1127-1155 1-29 (29)
53 KOG0036|consensus 97.6 0.00023 5E-09 81.2 8.9 84 1125-1218 13-99 (463)
54 PF13405 EF-hand_6: EF-hand do 97.6 5.8E-05 1.3E-09 55.8 2.8 30 1127-1156 1-31 (31)
55 KOG0034|consensus 97.4 0.00051 1.1E-08 72.8 8.7 115 1104-1218 41-164 (187)
56 KOG4223|consensus 97.4 0.00022 4.7E-09 79.6 5.5 116 1101-1218 118-258 (325)
57 KOG2643|consensus 97.4 0.00026 5.6E-09 81.3 6.1 106 1104-1218 207-335 (489)
58 cd05024 S-100A10 S-100A10: A s 97.2 0.0019 4.2E-08 60.0 8.9 66 1125-1191 7-79 (91)
59 KOG0751|consensus 97.0 0.00042 9.2E-09 80.0 3.7 126 1080-1218 50-196 (694)
60 KOG4223|consensus 97.0 0.00044 9.6E-09 77.2 3.2 88 1097-1184 201-301 (325)
61 PF13499 EF-hand_7: EF-hand do 96.9 0.00033 7.2E-09 61.3 1.4 52 1101-1152 5-66 (66)
62 KOG0040|consensus 96.9 0.0018 3.8E-08 83.0 7.4 85 1125-1212 2252-2345(2399)
63 KOG0377|consensus 96.8 0.0023 5E-08 73.3 6.9 61 1126-1186 547-613 (631)
64 PF13202 EF-hand_5: EF hand; P 96.3 0.003 6.6E-08 44.3 2.3 25 1128-1152 1-25 (25)
65 KOG2562|consensus 96.2 0.012 2.7E-07 68.6 8.3 111 1100-1218 229-368 (493)
66 PF00036 EF-hand_1: EF hand; 96.2 0.0039 8.4E-08 45.4 2.7 27 1163-1189 1-29 (29)
67 KOG0046|consensus 96.0 0.014 2.9E-07 68.8 7.0 66 1125-1191 18-88 (627)
68 cd00052 EH Eps15 homology doma 95.9 0.0074 1.6E-07 52.6 3.4 57 1099-1155 2-62 (67)
69 cd00051 EFh EF-hand, calcium b 95.5 0.0085 1.8E-07 50.3 2.3 52 1101-1152 5-62 (63)
70 PF13833 EF-hand_8: EF-hand do 95.4 0.016 3.4E-07 48.5 3.6 46 1109-1154 1-53 (54)
71 smart00027 EH Eps15 homology d 95.3 0.011 2.3E-07 56.2 2.5 66 1097-1162 11-85 (96)
72 KOG2643|consensus 95.3 0.08 1.7E-06 61.6 9.7 83 1103-1185 293-381 (489)
73 PRK12309 transaldolase/EF-hand 95.3 0.028 6E-07 66.7 6.2 49 1126-1187 334-384 (391)
74 PF12763 EF-hand_4: Cytoskelet 95.2 0.04 8.6E-07 53.1 6.0 60 1125-1187 9-70 (104)
75 cd05024 S-100A10 S-100A10: A s 95.1 0.014 2.9E-07 54.5 2.4 65 645-710 9-76 (91)
76 cd05022 S-100A13 S-100A13: S-1 94.9 0.021 4.5E-07 53.4 3.2 65 644-710 8-75 (89)
77 cd05023 S-100A11 S-100A11: S-1 94.9 0.037 8E-07 51.8 4.7 52 1105-1156 19-82 (89)
78 PF14788 EF-hand_10: EF hand; 94.9 0.047 1E-06 45.0 4.6 48 1142-1189 1-50 (51)
79 cd05026 S-100Z S-100Z: S-100Z 94.6 0.048 1E-06 51.5 4.7 55 1102-1156 16-83 (93)
80 cd00213 S-100 S-100: S-100 dom 94.4 0.05 1.1E-06 50.5 4.4 55 1101-1155 13-80 (88)
81 cd05025 S-100A1 S-100A1: S-100 94.2 0.026 5.6E-07 53.1 2.1 58 1099-1156 12-82 (92)
82 cd05031 S-100A10_like S-100A10 94.1 0.03 6.6E-07 52.8 2.3 57 1101-1157 13-82 (94)
83 cd05027 S-100B S-100B: S-100B 93.7 0.038 8.1E-07 51.6 2.0 59 1098-1156 10-81 (88)
84 cd00252 SPARC_EC SPARC_EC; ext 93.6 0.071 1.5E-06 52.4 3.8 53 1101-1153 53-107 (116)
85 KOG4065|consensus 93.2 0.13 2.9E-06 49.0 4.8 55 1130-1184 71-141 (144)
86 PRK12309 transaldolase/EF-hand 92.9 0.049 1.1E-06 64.6 1.9 52 1097-1155 335-386 (391)
87 smart00054 EFh EF-hand, calciu 92.8 0.092 2E-06 36.4 2.6 28 1128-1155 2-29 (29)
88 KOG4666|consensus 92.8 0.093 2E-06 58.6 3.7 90 1097-1188 260-359 (412)
89 KOG0377|consensus 92.0 0.22 4.8E-06 57.6 5.5 92 1126-1218 464-564 (631)
90 cd05029 S-100A6 S-100A6: S-100 91.6 0.21 4.5E-06 46.7 3.9 53 1104-1156 18-81 (88)
91 PF10591 SPARC_Ca_bdg: Secrete 90.8 0.087 1.9E-06 51.6 0.7 53 1131-1185 59-113 (113)
92 cd05030 calgranulins Calgranul 90.6 0.39 8.5E-06 44.8 4.8 47 1109-1155 23-80 (88)
93 PF09279 EF-hand_like: Phospho 88.5 1 2.2E-05 41.4 5.8 61 1127-1188 1-69 (83)
94 PF13202 EF-hand_5: EF hand; P 88.0 0.45 9.8E-06 33.4 2.4 22 1164-1185 1-24 (25)
95 KOG0038|consensus 86.0 1.3 2.9E-05 44.2 5.2 68 1146-1218 58-125 (189)
96 PF14788 EF-hand_10: EF hand; 85.8 0.94 2E-05 37.5 3.4 43 1113-1155 2-50 (51)
97 KOG4251|consensus 84.6 0.52 1.1E-05 50.7 1.8 89 1096-1184 236-341 (362)
98 PF13405 EF-hand_6: EF-hand do 83.5 1.1 2.3E-05 33.0 2.6 25 1163-1187 1-27 (31)
99 PF09149 DUF1935: Domain of un 81.5 0.67 1.5E-05 44.6 1.1 27 6-32 74-100 (104)
100 KOG2562|consensus 81.2 2.3 4.9E-05 50.4 5.4 78 1108-1185 327-421 (493)
101 KOG0041|consensus 80.1 4.1 8.8E-05 43.2 6.2 92 1097-1188 100-203 (244)
102 PLN02952 phosphoinositide phos 78.6 5.9 0.00013 49.7 8.2 78 1109-1187 13-109 (599)
103 smart00054 EFh EF-hand, calciu 77.1 2.4 5.2E-05 29.0 2.6 26 1163-1188 1-28 (29)
104 PF12763 EF-hand_4: Cytoskelet 74.8 0.69 1.5E-05 44.6 -1.0 61 642-707 8-68 (104)
105 KOG1707|consensus 73.0 10 0.00022 46.7 7.8 98 1088-1185 142-262 (625)
106 KOG0042|consensus 72.6 5.3 0.00011 48.5 5.3 66 1126-1191 593-660 (680)
107 KOG2243|consensus 70.6 6 0.00013 51.4 5.3 55 1130-1185 4061-4117(5019)
108 KOG0751|consensus 70.3 5.4 0.00012 47.4 4.6 77 1108-1184 159-240 (694)
109 KOG4666|consensus 68.9 5.7 0.00012 45.0 4.3 77 1108-1184 239-320 (412)
110 KOG4251|consensus 68.2 2.9 6.4E-05 45.2 1.8 58 1126-1183 101-163 (362)
111 cd02619 Peptidase_C1 C1 Peptid 67.7 7.3 0.00016 42.3 4.9 83 314-425 125-218 (223)
112 KOG0035|consensus 67.2 10 0.00022 49.1 6.5 66 1125-1190 746-818 (890)
113 PF09279 EF-hand_like: Phospho 65.3 1.8 4E-05 39.6 -0.3 67 646-713 2-72 (83)
114 PF14658 EF-hand_9: EF-hand do 64.1 10 0.00022 33.4 4.0 54 1101-1154 3-64 (66)
115 KOG1029|consensus 63.2 8.7 0.00019 48.0 4.6 61 1126-1188 195-257 (1118)
116 PF08726 EFhand_Ca_insen: Ca2+ 57.8 3.9 8.5E-05 36.3 0.4 52 1125-1184 5-65 (69)
117 PF05517 p25-alpha: p25-alpha 56.3 28 0.0006 36.1 6.4 63 1129-1191 2-72 (154)
118 KOG0040|consensus 55.3 29 0.00064 46.8 7.5 78 1100-1185 2300-2395(2399)
119 KOG0169|consensus 52.4 19 0.00042 45.5 5.2 88 1100-1190 140-234 (746)
120 KOG0169|consensus 50.8 33 0.00072 43.6 6.9 63 1128-1190 138-202 (746)
121 KOG1955|consensus 43.7 45 0.00097 40.0 6.1 60 1125-1186 230-291 (737)
122 PF10591 SPARC_Ca_bdg: Secrete 41.2 9.4 0.0002 37.4 0.2 49 1102-1150 60-112 (113)
123 PF01023 S_100: S-100/ICaBP ty 36.3 42 0.00091 27.1 3.1 30 645-675 7-39 (44)
124 PF05042 Caleosin: Caleosin re 35.5 31 0.00066 36.3 2.8 44 1129-1172 10-53 (174)
125 PF07499 RuvA_C: RuvA, C-termi 32.6 65 0.0014 26.3 3.8 41 1145-1187 3-43 (47)
126 PF05543 Peptidase_C47: Stapho 30.5 87 0.0019 33.0 5.2 54 314-377 91-144 (175)
127 cd02248 Peptidase_C1A Peptidas 28.1 71 0.0015 34.3 4.4 75 315-420 118-198 (210)
128 KOG4347|consensus 26.5 47 0.001 41.5 2.8 65 1083-1148 535-612 (671)
129 COG4870 Cysteine protease [Pos 25.3 60 0.0013 38.0 3.2 52 346-424 261-318 (372)
130 KOG1707|consensus 23.8 68 0.0015 39.8 3.4 57 1125-1185 314-374 (625)
131 KOG3866|consensus 22.9 92 0.002 35.3 3.9 56 1131-1186 249-322 (442)
132 cd02619 Peptidase_C1 C1 Peptid 22.6 72 0.0016 34.4 3.2 48 1038-1089 168-215 (223)
133 KOG3449|consensus 22.2 1.8E+02 0.0038 28.3 5.1 54 1128-1184 3-56 (112)
134 KOG0046|consensus 21.9 64 0.0014 39.3 2.6 66 644-710 19-85 (627)
135 PLN02222 phosphoinositide phos 21.4 2E+02 0.0043 36.4 6.9 62 1125-1188 24-90 (581)
136 KOG3555|consensus 21.3 51 0.0011 38.0 1.6 56 1101-1156 255-312 (434)
137 KOG4578|consensus 21.2 83 0.0018 36.1 3.2 53 1101-1153 338-397 (421)
138 KOG2871|consensus 20.4 93 0.002 36.4 3.4 60 1125-1184 308-370 (449)
139 KOG4578|consensus 20.2 68 0.0015 36.8 2.3 58 1132-1189 339-399 (421)
No 1
>KOG0045|consensus
Probab=100.00 E-value=1.5e-96 Score=888.54 Aligned_cols=515 Identities=37% Similarity=0.699 Sum_probs=466.0
Q ss_pred CCCHHHHHHHHHHcCCCeeCCCCCCCCCCCCCCCCCCC---CcceeecCcccccCCcccccCccccccccccCcCcchhh
Q psy13030 56 TANYHAIKRACREKGILYEDPDFPPGPKLLFRNKKAPV---QSLVWMRPHEMCQRPKFYSEDSLQGRFDFEAGRLGDAWF 132 (1218)
Q Consensus 56 ~~~~~~l~~~c~~~~~~f~D~~Fp~~~~Sl~~~~~~~~---~~~~W~Rp~e~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 132 (1218)
.++|+++++.|++++.+|+||.|||.++||+++...|. ..+.|+||+||+.+|+++.++ .
T Consensus 10 ~~~~~~~~~~cl~~~~~F~D~~FP~~~~Sl~~~~~~p~~~~~~i~W~RP~ei~~~p~~i~~~---------------~-- 72 (612)
T KOG0045|consen 10 MKDFERLRRDCLPAKSLFVDALFPAADSSLFYKLSTPLAQFSDIVWKRPQEICANPRLIVDG---------------P-- 72 (612)
T ss_pred hhhHHHHHHHHhhcCCcccccCCCCCCccccccccCCCcccccceecCcccccCCCCeecCC---------------C--
Confidence 56899999999999999999999999999999876564 689999999999999999887 3
Q ss_pred HHhhcccccCccccccCCCCCCCCCCCcccccccCCcccccCCCCCccccccCCCCCchHHHHHHHhccCcccccccccC
Q psy13030 133 LAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRPKFYSEDSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPP 212 (1218)
Q Consensus 133 ~~~~~~~~~~~~~~~r~~p~~~~~~~~~~~~~lf~~~~~~~~~~~~~~dI~QG~lGDCwllaAl~~La~~~~ll~~v~~~ 212 (1218)
+++||+||.|||||||||+|+||.+++++.+|+|+
T Consensus 73 ---------------------------------------------~~~di~Qg~lgdCw~laA~a~la~~~~ll~~vip~ 107 (612)
T KOG0045|consen 73 ---------------------------------------------SRFDVKQGLLGDCWFLAACAALALRPELLDKVIPQ 107 (612)
T ss_pred ---------------------------------------------CcceeEEeeecchHHHHHHHHhhcCHHHHHhccCC
Confidence 79999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCceEEEeeeeCCeEEEEEecccccccCCcEEEEecCCCCchhHHHHHHHhhcccCCcccccCCCChHHHH
Q psy13030 213 EQSFDPATNYCGLFRFRFWHFGEWKEILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRAL 292 (1218)
Q Consensus 213 ~q~~~~~~~~~G~y~~r~~~~G~w~~VvVDD~lP~~~g~~~f~~s~~~~e~W~~LLEKAyAKl~GsY~~l~~gg~~~~al 292 (1218)
+|+|+ ++|+|+||||||++|+|++|+|||+|||.+|++.|++++..||||+|||||||||++|||++| .||.+.+||
T Consensus 108 ~~~~~--~~yaGif~f~~w~~G~W~~VvIDD~LP~~~~~~~~~~s~~~~efW~aLlEKAyaKl~GsY~~l-~gg~~~~a~ 184 (612)
T KOG0045|consen 108 DQSFQ--ENYAGIFHFRFWQNGEWVEVVIDDRLPTSNGGLLFSHSSGKNEFWAALLEKAYAKLLGSYEAL-HGGSTIDAL 184 (612)
T ss_pred Ccccc--cccceEEEEEEEeCCeEEEEEeeeecceEcCCEEEEeecCCceeHHHHHHHHHHHHhCcccCC-CCCchhhHH
Confidence 99998 899999999999999999999999999999999999999889999999999999999999999 999999999
Q ss_pred hhccCCeeEEEEccCCCc----cchHHHHHhhcCCCCeEEEecccchhHH--HHHhhhcCccccceeeeeeeEEEcCCCC
Q psy13030 293 QDLTGGIVQSFALTNQDR----YLTFQVLNSAVPRSSLLISSIKLEKEQK--RQLRLRNGLITQHAYSVTGLARVRGPLG 366 (1218)
Q Consensus 293 ~dlTG~~~~~~~l~~~~~----~l~~~~l~~~~~~g~l~~~~~~~~~~~~--~~~~~~~GLv~~HaYsV~~v~~v~~~~~ 366 (1218)
++|||+++|.+.+.+.+. ++ +..+.++.++|++++|++......+ .+....+||+++|||+|+++++++++++
T Consensus 185 ~~lTG~~~e~~~l~~~~~~~~~~l-~~~~~~~~~~~~~l~c~~~~~~~~~~~~~~~~~~gL~~~HaYsit~~~~~~~~~~ 263 (612)
T KOG0045|consen 185 VDLTGGVTEPFDLNKTPKSFKNNL-VWALLKSAHRGSLLLCSIESKDPTEEEEEAKLRNGLVKGHAYAITDVREVQGRGG 263 (612)
T ss_pred HhccCCccceeEcccCcchhHHHH-HHHHHHhhhccCceeeeccccccchhHHHHHhhcCccccccEEEEEEEEeecccc
Confidence 999999999999998877 77 7888889999999999986512222 2667999999999999999999999888
Q ss_pred cccEEEEECCCCCCcccCCCCCCCcccCCCCHHHHHHhCCccCCCCeeccchHHHHhhccccceeeeCCCCCCCcccccC
Q psy13030 367 ETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHFTHLDLVHVGPDDWMAEPALQS 446 (1218)
Q Consensus 367 ~~~LvrLrNPWG~~eW~G~wsd~s~~W~~~~~~~~~~l~~~~~~dG~FWMs~~Df~~~F~~l~ic~~~p~~~~~~~~~~~ 446 (1218)
.++|||||||||..||+|+|||.+++|..+.+..++.+..+..+||+|||+++||+++|+.++||++.|+.+... .
T Consensus 264 ~~~lirlrNPwg~~~W~G~wsd~~~~W~~v~~~~~~~~~~~~~~dGeFWms~~dF~~~F~~~~vC~~~~~~~~~~----~ 339 (612)
T KOG0045|consen 264 KHRLIRLRNPWGESEWNGPWSDGSEEWHLVDKSKLSELGRQPLDDGEFWMSFDDFLREFDSLTVCRLRPDWLESR----N 339 (612)
T ss_pred cceeEEecCCcCCceeccccccCCcchhhhCHHHHhhcccccccCCCeeeeHHHHHhhCCeEeecCCCcchhhhh----h
Confidence 999999999999999999999999999999999999998886799999999999999999999999999877544 3
Q ss_pred CCCcEEEeeeeee--eecccCCCCCCccCCccCCCeEEEEeccCCCCceEEEEEEeecccchhhhhccCceeeEEEEEEE
Q psy13030 447 KQPWRAVLARRRW--RTGYNAGGGPNFVETTSVNPQFHIQIPRSSNNKCHVVVSVTQYYETQVDEKQKRTLYAIGFAVYE 524 (1218)
Q Consensus 447 ~~~W~~~~~~G~W--~~g~taGG~~n~~~Tf~~NPQy~l~l~~~~~~~~~V~VsL~Q~~~R~~~~~~~~~~~~Igf~V~k 524 (1218)
...|....++|+| .++.++|||+|+.+||++||||.|.+..+....|.+++.|+|+++|. .++.+.+..+|||+||+
T Consensus 340 ~~~~~~~~~~~~w~~~~~~t~ggc~~~~~tF~~npq~~~~~~~~~~~~~~~v~~~~q~~~~~-~~~~~~~~~~ig~~i~~ 418 (612)
T KOG0045|consen 340 QLQWVKLSLDGEWELARGVTAGGCRNSVDTFDRNPQYILAVRKPTKSLCAVVLALFQKTRRG-ERSFGANILDIGFHIYE 418 (612)
T ss_pred eeeeeeeecCCccceeecccCCCCccCcccccCCceEEEEecCCCccceEEEEEeecccccc-cccccceeeecceEEEE
Confidence 3589999999999 89999999999999999999999999865556799999999999998 67777799999999999
Q ss_pred EcCCCcccCcccccccCCCccCCccc-eeeeEEEEEecCCCeEEeeccCCCCCCcceeEEEecccccceeeecCCCCCCC
Q psy13030 525 ISSSMTRLTPQFVAHTKPLDVTNHSV-AREVVTFFTLPPGDFIVVPQTNVPDCDGKFLLRIFTDEQRDFIVVPQTNVPDC 603 (1218)
Q Consensus 525 v~~~~~~l~~~~f~~~~~~~~s~~~~-~ReVs~r~~L~PG~YvIIPsT~~p~~~~~f~l~~~~~~~~~~~~~~~~~~~~~ 603 (1218)
++.+ ...++..+.+.+.+..++ .|+|+.++.+|||.|++|||||+|+ +
T Consensus 419 v~~~----~~~~~~~~~~~~~~~~~i~~r~v~~~~~~P~~~y~~~pst~~~~---------------------------~ 467 (612)
T KOG0045|consen 419 VPLE----GKYFVLDNAPIASSSSFINNREVSVRFRLPPGTYVIVPSTFEPG---------------------------E 467 (612)
T ss_pred ecCC----CCceEecccchhcccccccceeEEEEecCCCcceeecccCCCCC---------------------------C
Confidence 9754 456677778899999999 9999999999999999999999999 9
Q ss_pred CCCeeeeeeccCcccccccCccccccccccccccccCccChhhHHHHHHHhcCCCCccCHHHHHHHHhhhccCcccccCC
Q psy13030 604 DGKFLLRIFTDEQSNIWEVNEDNMVFRNISTEFLENTVVLPDGKSLVAKLLVKYPLEVDVSQFQKILRSHWKENTVVLPD 683 (1218)
Q Consensus 604 e~~F~LRVfS~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~lF~~~ag~~d~ei~a~eLq~~Ln~~~~~~~~~~~~ 683 (1218)
+++|+|||||+......+ +++|...+++..++....+ +|+.+.
T Consensus 468 ~~~f~lrvfs~~~~~~~~------------------------------------~~~i~~~~~~~~~~~~~~~-~~~~~~ 510 (612)
T KOG0045|consen 468 EGEFLLRVFSNVKVKSEE------------------------------------DMEISLDETKRSTNIIVMK-GFSLGE 510 (612)
T ss_pred CccEEEEEeecccccCcc------------------------------------ceEEeecccccceeeeeec-ceehhh
Confidence 999999999987654332 2355555555555544433 799999
Q ss_pred CceeeeeeccCCCCccChHHHHHHHHHHHH
Q psy13030 684 GKSLVAKLLVKYPLEVDVSQFQKILRSHWK 713 (1218)
Q Consensus 684 crs~v~~~d~~~~g~l~~~ef~~l~~~~w~ 713 (1218)
|+.|+++++.+.+++++..+|..+ |.
T Consensus 511 ~~~~~~~~~~~~~~k~s~~~~~~~----~~ 536 (612)
T KOG0045|consen 511 CGDKWKLSSTLVNTKVSRSSEFIL----TV 536 (612)
T ss_pred hchhhhccccccccccchhhceee----ee
Confidence 999999999999999999999999 77
No 2
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=100.00 E-value=8.4e-74 Score=655.27 Aligned_cols=312 Identities=48% Similarity=0.932 Sum_probs=284.3
Q ss_pred HHHHHHHHHHcCCCeeCCCCCCCCCCCCCCCCCCCCcceeecCcccccCCcccccCccccccccccCcCcchhhHHhhcc
Q psy13030 59 YHAIKRACREKGILYEDPDFPPGPKLLFRNKKAPVQSLVWMRPHEMCQRPKFYSEDSLQGRFDFEAGRLGDAWFLAAISS 138 (1218)
Q Consensus 59 ~~~l~~~c~~~~~~f~D~~Fp~~~~Sl~~~~~~~~~~~~W~Rp~e~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (1218)
|++|++.|++++.+|+||+|||+..||+.++.. ...++|+||+||+++|+++.++ +
T Consensus 1 y~~i~~~c~~~~~~f~D~~Fpp~~~sl~~~~~~-~~~~~W~Rp~e~~~~~~~~~~~---------------i-------- 56 (318)
T smart00230 1 YEALRQYCKESGTLFEDPLFPANNGSLFFSQRQ-RKFVVWKRPHEIFENPPFIVGG---------------A-------- 56 (318)
T ss_pred ChHHHHHHHHcCCCccCCCCCCCcCccccCCCC-CCCcEEECcHHHcCCCEEEeCC---------------C--------
Confidence 789999999999999999999999999976543 3579999999999998887655 3
Q ss_pred cccCccccccCCCCCCCCCCCcccccccCCcccccCCCCCccccccCCCCCchHHHHHHHhccCcccccccccCCCCCCC
Q psy13030 139 LTLTPKFLDRVIPPEQSFDPATNYCGLFRPKFYSEDSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDP 218 (1218)
Q Consensus 139 ~~~~~~~~~r~~p~~~~~~~~~~~~~lf~~~~~~~~~~~~~~dI~QG~lGDCwllaAl~~La~~~~ll~~v~~~~q~~~~ 218 (1218)
+|.||+||.||||||||||++||++|+++++|||+++++.
T Consensus 57 ---------------------------------------~~~di~QG~lgDC~~lsal~~la~~~~~i~~if~~~~~~~- 96 (318)
T smart00230 57 ---------------------------------------SRTDICQGVLGDCWLLAALASLTLREKLLDRVIPHDQEFS- 96 (318)
T ss_pred ---------------------------------------ChhhccCcccccHHHHHHHHHHHhCHHHHhheEeCCcccc-
Confidence 6889999999999999999999999999999999877665
Q ss_pred CCCCCceEEEeeeeCCeEEEEEecccccccCCcEEEEecCCCCchhHHHHHHHhhcccCCcccccCCCChHHHHhhccCC
Q psy13030 219 ATNYCGLFRFRFWHFGEWKEILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGG 298 (1218)
Q Consensus 219 ~~~~~G~y~~r~~~~G~w~~VvVDD~lP~~~g~~~f~~s~~~~e~W~~LLEKAyAKl~GsY~~l~~gg~~~~al~dlTG~ 298 (1218)
+++.|+|+||||.+|+|+.|+|||+||+.+|.++|+++++++|+|++||||||||+||||++| .||.+.+||++|||+
T Consensus 97 -~~~~G~y~vrl~~~G~w~~V~VDd~lP~~~~~~~~~~~~~~~e~W~~LLEKAyAK~~GsY~~i-~gg~~~~al~~LTG~ 174 (318)
T smart00230 97 -ENYAGIFHFRFWRFGKWVDVVIDDRLPTYNGELVFMHSNSRNEFWSALLEKAYAKLNGCYEAL-KGGSTTEALEDLTGG 174 (318)
T ss_pred -cccCCEEEEEEEECCEEEEEEecCCCeeeCCceEEEEeCCCCcchhHHHHHHHHHHcCCCccc-CCCCHHHHHHHhcCC
Confidence 678999999999999999999999999999899999999999999999999999999999999 999999999999999
Q ss_pred eeEEEEccCC---CccchHHHHHhhcCCCCeEEEecccchhHHHHHhhhcCccccceeeeeeeEEEcCCCCcccEEEEEC
Q psy13030 299 IVQSFALTNQ---DRYLTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAYSVTGLARVRGPLGETPLVRLRN 375 (1218)
Q Consensus 299 ~~~~~~l~~~---~~~l~~~~l~~~~~~g~l~~~~~~~~~~~~~~~~~~~GLv~~HaYsV~~v~~v~~~~~~~~LvrLrN 375 (1218)
+++.|+++.. +.++ |+.|.+++++|++|+|++........+.....||+.+|||+|+++.++... +++||+|||
T Consensus 175 ~~~~i~l~~~~~~~~~~-w~~l~~~~~~g~lv~~~t~~~~~~~~~~~~~~GLv~~HaYsVl~v~~~~~~--~~~Ll~lrN 251 (318)
T smart00230 175 VAESIDLKEASKDPDNL-FEDLFKAFERGSLMGCSIGAGTAVEEEEQKDCGLVKGHAYSVTDVREVQGR--RQELLRLRN 251 (318)
T ss_pred CeEEEEcccccCCHHHH-HHHHHHHHhCCCeEEEEcCCCCcchhhhhhhcCcccCccEEEEEEEEEecC--CeEEEEEEC
Confidence 9999999875 3467 999999999999999998754322334457899999999999999999742 366999999
Q ss_pred CCCCCcccCCCCCCCcccCCCCHHHHHHhCCccCCCCeeccchHHHHhhccccceeeeCCCCCC
Q psy13030 376 PWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHFTHLDLVHVGPDDWM 439 (1218)
Q Consensus 376 PWG~~eW~G~wsd~s~~W~~~~~~~~~~l~~~~~~dG~FWMs~~Df~~~F~~l~ic~~~p~~~~ 439 (1218)
|||+.||+|+|||+|++|++++++++++|+....+||+|||+|+||+++|++++||+++|+.+.
T Consensus 252 PWg~~eW~G~wsd~s~~W~~~~~~~~~~l~~~~~~dG~FWM~~~df~~~F~~~~vc~~~~~~~~ 315 (318)
T smart00230 252 PWGQVEWNGPWSDDSPEWRSVSASEKKNLGLTFDDDGEFWMSFEDFLRHFDKVEICNLNPDSLE 315 (318)
T ss_pred CCCCCCcCCCCCCCCccccccCHHHHHHhCCCCCCCCEEEEEhHHHHhhCCeEEEeccCCcccc
Confidence 9999999999999999999999999999998878999999999999999999999999998653
No 3
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification. ; InterPro: IPR001300 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. Calpains are a family of cytosolic cysteine proteinases (see PDOC00126 from PROSITEDOC). Members of the calpain family are believed to function in various biological processes, including integrin-mediated cell migration, cytoskeletal remodeling, cell differentiation and apoptosis [, ]. The calpain family includes numerous members from C. elegans to mammals and with homologues in yeast and bacteria. The best characterised members are the m- and mu-calpains, both proteins are heterodimer composed of a large catalytic subunit and a small regulatory subunit. The large subunit comprises four domains (dI-dIV) while the small subunit has two domains (dV-dVI). Domain dI is a short region cleaved by autolysis, dII is the catalytic core, dIII is a C2-like domain, dIV consists of five calcium binding EF-hand motifs []. The crystal structure of calpain has been solved [, ]. The catalytic region consists of two distinct structural domains (dIIa and dIIb). dIIa contains a central helix flanked on three faces by a cluster of alpha-helices and is entirely unrelated to the corresponding domain in the typical thiol proteinases. The fold of dIIb is similar to the corresponding domain in other cysteine proteinases and contains two three-stranded anti-parallel beta-sheets. The catalytic triad residues (C,H,N) are located in dIIa and dIIb. The activation of the domain is dependent on the binding of two calcium atoms in two non EF-hand calcium binding sites located in the catalytic core, one close to the Cys active site in dIIa and one at the end of dIIb. Calcium-binding induced conformational changes in the catalytic domain which align the active site [][]. The profile covers the whole catalytic domain.; GO: 0004198 calcium-dependent cysteine-type endopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 2NQA_A 1KFU_L 1KFX_L 1QXP_B 2R9C_A 1TL9_A 2G8E_A 1KXR_B 2G8J_A 2NQG_A ....
Probab=100.00 E-value=3.1e-69 Score=616.83 Aligned_cols=296 Identities=39% Similarity=0.776 Sum_probs=247.5
Q ss_pred CeeCCCCCCCCCCCCCCCCCCCCcceeecCcccccCCcccccCccccccccccCcCcchhhHHhhcccccCccccccCCC
Q psy13030 72 LYEDPDFPPGPKLLFRNKKAPVQSLVWMRPHEMCQRPKFYSEDSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIP 151 (1218)
Q Consensus 72 ~f~D~~Fp~~~~Sl~~~~~~~~~~~~W~Rp~e~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~p 151 (1218)
+|+||+|||+.+||++++..+ ..++|+||+|++.+|+|+.++ +
T Consensus 1 ~f~D~~Fpp~~~Sl~~~~~~~-~~~~W~R~~e~~~~~~~~~~~---------------~--------------------- 43 (298)
T PF00648_consen 1 LFEDPEFPPNDSSLGFDDQKP-KNVEWKRPSEICENPQFFIDG---------------I--------------------- 43 (298)
T ss_dssp ----TTS-SSHHHHTSSTTST-TT-EEE-HHHHSSS-BSSSSS---------------S---------------------
T ss_pred CccCCCCccCccccccCCCCC-CcceeEechhcCCCCeEEECC---------------C---------------------
Confidence 699999999999999875443 678999999999999887666 3
Q ss_pred CCCCCCCCcccccccCCcccccCCCCCccccccCCCCCchHHHHHHHhccCcccccccccCCCCCCCCCCCCceEEEeee
Q psy13030 152 PEQSFDPATNYCGLFRPKFYSEDSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRFRFW 231 (1218)
Q Consensus 152 ~~~~~~~~~~~~~lf~~~~~~~~~~~~~~dI~QG~lGDCwllaAl~~La~~~~ll~~v~~~~q~~~~~~~~~G~y~~r~~ 231 (1218)
.+.||+||.||||||||||++||.+|++|+++||.++++. .++.|+|+||||
T Consensus 44 --------------------------~~~di~QG~lgDc~llaaL~~la~~~~~i~~i~~~~~~~~--~~~~G~y~v~l~ 95 (298)
T PF00648_consen 44 --------------------------SPSDIRQGSLGDCWLLAALAALAEHPDLIKKIFPVNQSFN--ENYNGIYTVRLF 95 (298)
T ss_dssp --------------------------SGGGEBE-SSSSHHHHHHHHHHTTSHHHHHHHS-SS--SS--TT-SSEEEEEEE
T ss_pred --------------------------ccccccccccCChhHHHHHHHHHhcccccccccccccccc--cccCceeeEeec
Confidence 6789999999999999999999999999999998877665 567899999999
Q ss_pred eCCeEEEEEecccccccCCcEEEEecCCCCchhHHHHHHHhhcccCCcccccCCCChHHHHhhccCCeeEEEEccCCC--
Q psy13030 232 HFGEWKEILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQD-- 309 (1218)
Q Consensus 232 ~~G~w~~VvVDD~lP~~~g~~~f~~s~~~~e~W~~LLEKAyAKl~GsY~~l~~gg~~~~al~dlTG~~~~~~~l~~~~-- 309 (1218)
.+|+|+.|+|||+||+.+|+|+|++|.+++|+|++||||||||+||||++| .||++.+||++|||++++.+.+++..
T Consensus 96 ~~G~w~~V~VDd~lP~~~g~~~f~~s~~~~elW~~LlEKAyAKl~GsY~~l-~gg~~~~al~~LTG~~~~~~~l~~~~~~ 174 (298)
T PF00648_consen 96 KNGEWREVTVDDRLPCKNGKPLFARSSDPNELWPSLLEKAYAKLHGSYSAL-EGGNPSEALQDLTGGPPESIDLRDDSSD 174 (298)
T ss_dssp ETTEEEEEEEES-EEEETTEESSSBESSTTB-HHHHHHHHHHHHTTSSGGG-SSBSHHHHHHHHHSSEEEEEEGGG--T-
T ss_pred cCCeeeeeccchhhhccccceeeeccCCcccchhhhhhchhhhcccccccc-CCCChhhhhHhhcCCcceeeeccccchh
Confidence 999999999999999999999999999999999999999999999999999 99999999999999999999997654
Q ss_pred ccchHHHHHhhcCCCCeEEEecccchhHHHHHhhhcCccccceeeeeeeEEEcCCCCcccEEEEECCCCCCcccCCCCCC
Q psy13030 310 RYLTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAYSVTGLARVRGPLGETPLVRLRNPWARGEWTGPWSER 389 (1218)
Q Consensus 310 ~~l~~~~l~~~~~~g~l~~~~~~~~~~~~~~~~~~~GLv~~HaYsV~~v~~v~~~~~~~~LvrLrNPWG~~eW~G~wsd~ 389 (1218)
.++ |+.+.+..+++.+++|++........+.....||+++|||+|++++++...+..++|||||||||..||+|+||+.
T Consensus 175 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~HaY~Vl~~~~~~~~~~~~~lv~LrNPwg~~~w~G~ws~~ 253 (298)
T PF00648_consen 175 DEL-WELWKKLLKSGSLVGCSTGSSTPFDSEEYEKNGLVPGHAYAVLDVREVNGNGEGHRLVKLRNPWGSTEWKGDWSDD 253 (298)
T ss_dssp -TH-HHHHHHHHHCT-EEEEE--SSSGGGTTSBCTTSBBTTS-EEEEEEEEEEETTEEEEEEEEE-TTSS---SSTTSTT
T ss_pred hhH-HHHHHHHHHhccccccccccccccccccccccCcccceeEEEEEEEeeccccceeEEEEEcCCCcccccccccccc
Confidence 367 9999999999999999887544444455688999999999999999998666679999999999999999999999
Q ss_pred CcccCCCCHHHHHHhCCccCCCCeeccchHHHHhhccccceeeeC
Q psy13030 390 SWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHFTHLDLVHVG 434 (1218)
Q Consensus 390 s~~W~~~~~~~~~~l~~~~~~dG~FWMs~~Df~~~F~~l~ic~~~ 434 (1218)
|++|+++.+..++++.....+||+|||+|+||+++|+.|+||+++
T Consensus 254 s~~W~~~~~~~~~~~~~~~~~dg~FWM~~~df~~~F~~i~vc~~~ 298 (298)
T PF00648_consen 254 SPEWTEIHPSLRKRLNQSSSDDGTFWMSFEDFLKYFSSIYVCRLT 298 (298)
T ss_dssp SGGGGGS-HHHHHHHTTTSSSSSEEEEEHHHHHHHSEEEEEEESC
T ss_pred ccccccCCHHHHhhcccccccCccHhHhHHHHHhhCCceEEEeeC
Confidence 999999889999999988879999999999999999999999974
No 4
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=100.00 E-value=1e-66 Score=598.93 Aligned_cols=300 Identities=45% Similarity=0.844 Sum_probs=265.1
Q ss_pred HHHHHHHcCCCeeCCCCCCCCCCCCCCC----CCCCCcceeecCcccccC-----CcccccCccccccccccCcCcchhh
Q psy13030 62 IKRACREKGILYEDPDFPPGPKLLFRNK----KAPVQSLVWMRPHEMCQR-----PKFYSEDSLQGRFDFEAGRLGDAWF 132 (1218)
Q Consensus 62 l~~~c~~~~~~f~D~~Fp~~~~Sl~~~~----~~~~~~~~W~Rp~e~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~ 132 (1218)
|++.|++++.+|+|++|||+.+||+... ......++|+||+|++.. |.++.++ +
T Consensus 2 ~~~~c~~~~~~f~D~~Fpp~~~s~~~~~~~~~~~~~~~~~W~Rp~~~~~~~~~~~~~~~~~~---------------~-- 64 (315)
T cd00044 2 LLQICLLSGVLFEDPDFPPNDSSLGFDDSLSNGQPKKVIEWKRPSEIFADDGNSNPRLFVNG---------------A-- 64 (315)
T ss_pred HHHHHHHcCCCccCCCCCCCccccccccccccccCcCcceEECcHHHhCcccCCCCEEEeCC---------------C--
Confidence 7899999999999999999999998742 112567999999999875 3333222 1
Q ss_pred HHhhcccccCccccccCCCCCCCCCCCcccccccCCcccccCCCCCccccccCCCCCchHHHHHHHhccCcccccccccC
Q psy13030 133 LAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRPKFYSEDSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPP 212 (1218)
Q Consensus 133 ~~~~~~~~~~~~~~~r~~p~~~~~~~~~~~~~lf~~~~~~~~~~~~~~dI~QG~lGDCwllaAl~~La~~~~ll~~v~~~ 212 (1218)
+|.||+||.+|||||||||++||++|++|+++|++
T Consensus 65 ---------------------------------------------~~~dI~QG~lgDC~~lsaL~~la~~~~~i~~lf~~ 99 (315)
T cd00044 65 ---------------------------------------------SPSDVCQGILGDCWFLAALAALAERPELLKRVIPP 99 (315)
T ss_pred ---------------------------------------------ChhhcccCcccchHHHHHHHHHHcCHHHHhheEcC
Confidence 79999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCceEEEeeeeCCeEEEEEecccccccCCcEEEEecCCCCchhHHHHHHHhhcccCCcccccCCCChHHHH
Q psy13030 213 EQSFDPATNYCGLFRFRFWHFGEWKEILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRAL 292 (1218)
Q Consensus 213 ~q~~~~~~~~~G~y~~r~~~~G~w~~VvVDD~lP~~~g~~~f~~s~~~~e~W~~LLEKAyAKl~GsY~~l~~gg~~~~al 292 (1218)
.+.+. .++.|+|+||||.+|+|+.|+|||+||+.++.|+|++|.+.+|+|++||||||||+||||++| .||++.+||
T Consensus 100 ~~~~~--~~~~G~y~v~l~~~G~w~~V~VDD~lP~~~~~~~~~~s~~~~e~W~~LlEKAyAK~~GsY~~i-~gg~~~~al 176 (315)
T cd00044 100 DQSFE--ENYAGIYHFRFWKNGEWVEVVIDDRLPTSNGGLLFMHSRDRNELWVALLEKAYAKLHGSYEAL-VGGNTAEAL 176 (315)
T ss_pred Ccccc--cCcCcEEEEEEEECCEEEEEEecCCCeecCCceEEEEECCCCeEcHHHHHHHHHhhcCCcccc-CCCCHHHHH
Confidence 76543 478999999999999999999999999998889999999899999999999999999999999 999999999
Q ss_pred hhccCCeeEEEEccCC-----CccchHHHHHhhcCCCCeEEEecccchhHHHHHhhhcCccccceeeeeeeEEEcCCCCc
Q psy13030 293 QDLTGGIVQSFALTNQ-----DRYLTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAYSVTGLARVRGPLGE 367 (1218)
Q Consensus 293 ~dlTG~~~~~~~l~~~-----~~~l~~~~l~~~~~~g~l~~~~~~~~~~~~~~~~~~~GLv~~HaYsV~~v~~v~~~~~~ 367 (1218)
++|||++++.|+++.. ...+ |+.|.++.+.+++|+|++...... +.....||+.+|||+|+++.++.. .+
T Consensus 177 ~~LTG~~~~~i~~~~~~~~~~~~~~-~~~l~~~~~~~~lv~~~t~~~~~~--~~~~~~Gl~~~HaY~Vl~~~~~~~--~~ 251 (315)
T cd00044 177 EDLTGGPTERIDLKSADASSGDNDL-FALLLSFLQGGSLIGCSTGSRSEE--EARTANGLVKGHAYSVLDVREVQE--EG 251 (315)
T ss_pred HHhhCCCcEEEEccccccccCHHHH-HHHHHHHhhCCCEEEEEcCCCCcc--hhhccCCcccCcceEEeEEEEEcc--Cc
Confidence 9999999999999875 3456 999999999999999998754321 135689999999999999999873 34
Q ss_pred ccEEEEECCCCCCcccCCCCCCCcccCCCCHHHHHHhCCccCCCCeeccchHHHHhhccccceee
Q psy13030 368 TPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHFTHLDLVH 432 (1218)
Q Consensus 368 ~~LvrLrNPWG~~eW~G~wsd~s~~W~~~~~~~~~~l~~~~~~dG~FWMs~~Df~~~F~~l~ic~ 432 (1218)
++||+||||||..||+|+|||.|++|.. .+..++.+.....+||+|||+|+||+++|+.++||+
T Consensus 252 ~~lv~lrNPWg~~~w~G~ws~~~~~w~~-~~~~~~~~~~~~~~dG~Fwm~~~df~~~F~~~~vc~ 315 (315)
T cd00044 252 LRLLRLRNPWGVGEWWGGWSDDSSEWWV-IDAERKKLLLSGKDDGEFWMSFEDFLRNFDGLYVCN 315 (315)
T ss_pred eEEEEecCCccCCCccCCCCCCCchhcc-ChHHHHHhcCCCCCCCEEEEEhHHhheeeCeEEEeC
Confidence 9999999999999999999999999984 346777777777799999999999999999999995
No 5
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=100.00 E-value=7.4e-49 Score=449.53 Aligned_cols=263 Identities=35% Similarity=0.597 Sum_probs=226.3
Q ss_pred eecccCccccccccccCcCCccccccCCCCcccccccccccccccccccCCCCcccccchhhhH--HHHHhhcccCcccc
Q psy13030 829 VHVQMTGWRSLRYNQNNLGELSWLAEDGGPVTMLEAARISFYGCYENLTHGGSTTRALQDLTGG--IVQSFALTNQDRYL 906 (1218)
Q Consensus 829 ~~~~~~~w~sl~~~~~~~g~~~W~r~~~~p~e~~~~~~~~~~~~~~~~~~~~s~~di~Qg~lGd--~vAsla~~a~~~~~ 906 (1218)
...|++.-.|+.+++.....+.|+| |.|+++.|+ ++..++++.||.||.+|| ||||||++++.+.+
T Consensus 17 D~~Fpp~~~sl~~~~~~~~~~~W~R----p~e~~~~~~--------~~~~~i~~~di~QG~lgDC~~lsal~~la~~~~~ 84 (318)
T smart00230 17 DPLFPANNGSLFFSQRQRKFVVWKR----PHEIFENPP--------FIVGGASRTDICQGVLGDCWLLAALASLTLREKL 84 (318)
T ss_pred CCCCCCCcCccccCCCCCCCcEEEC----cHHHcCCCE--------EEeCCCChhhccCcccccHHHHHHHHHHHhCHHH
Confidence 3345666677777776667899999 999998765 457899999999999999 99999999987765
Q ss_pred ceeccc-------CCCCcceEEEccCCeEEEEEecCCCCCCCCcEEEEccCCCCchHHHHHHHhhhcccCCcccccCCCC
Q psy13030 907 TFQVLN-------SAVPRSSLLISSIKLWKEILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGS 979 (1218)
Q Consensus 907 ~~~~~~-------~~~~~~~v~l~~~G~w~~V~IDD~lP~~~g~~~f~~s~~~~e~W~~LlEKAyAKl~G~Y~~l~~gg~ 979 (1218)
...+++ +..|.|.|+|++||+|+.|+|||+||+.++.++|+++++++|+|++||||||||+||||++|. ||.
T Consensus 85 i~~if~~~~~~~~~~~G~y~vrl~~~G~w~~V~VDd~lP~~~~~~~~~~~~~~~e~W~~LLEKAyAK~~GsY~~i~-gg~ 163 (318)
T smart00230 85 LDRVIPHDQEFSENYAGIFHFRFWRFGKWVDVVIDDRLPTYNGELVFMHSNSRNEFWSALLEKAYAKLNGCYEALK-GGS 163 (318)
T ss_pred HhheEeCCcccccccCCEEEEEEEECCEEEEEEecCCCeeeCCceEEEEeCCCCcchhHHHHHHHHHHcCCCcccC-CCC
Confidence 555543 257899999999999999999999999888899999999999999999999999999999996 999
Q ss_pred hHHHHhhccCCeeEEEECcCc--ChhhHHHHHHHhCCCCCEEEEcccCchHHHHhhhhcCCCccCCceeeccEEEEccCC
Q psy13030 980 TTRALQDLTGGIVQSFALTNQ--DRYLTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAYSVTGLARVRGPL 1057 (1218)
Q Consensus 980 ~~~aL~~LTG~~~~~~~l~~~--~~~~~~~~l~~~~~~~~li~~~~~~~~~~~~~~~~~~GLv~~HaYsVl~~~~~~~~~ 1057 (1218)
+.+||++|||++++.+++++. +.+.+|+.|.+++++|.+|+|++.......+......||+++|||+|+++.++++.
T Consensus 164 ~~~al~~LTG~~~~~i~l~~~~~~~~~~w~~l~~~~~~g~lv~~~t~~~~~~~~~~~~~~GLv~~HaYsVl~v~~~~~~- 242 (318)
T smart00230 164 TTEALEDLTGGVAESIDLKEASKDPDNLFEDLFKAFERGSLMGCSIGAGTAVEEEEQKDCGLVKGHAYSVTDVREVQGR- 242 (318)
T ss_pred HHHHHHHhcCCCeEEEEcccccCCHHHHHHHHHHHHhCCCeEEEEcCCCCcchhhhhhhcCcccCccEEEEEEEEEecC-
Confidence 999999999999999999876 47789999999999999999886554312233446799999999999999998763
Q ss_pred CeeeEEEEeCCCCCCccCCcccc-------------------------ccccchhhhccCCcccccceeeeeec
Q psy13030 1058 GETPLVRLRNPWARGEWTGPWSE-------------------------FFLNFSAYLLEKPSLDMCKSLIMLRD 1106 (1218)
Q Consensus 1058 ~~~rlv~LrNPWg~~ew~G~ws~-------------------------fwm~~~df~~~f~sl~icr~li~~~D 1106 (1218)
.++||+||||||..+|+|+||+ |||+|+||+++|.++.+|+.-...++
T Consensus 243 -~~~Ll~lrNPWg~~eW~G~wsd~s~~W~~~~~~~~~~l~~~~~~dG~FWM~~~df~~~F~~~~vc~~~~~~~~ 315 (318)
T smart00230 243 -RQELLRLRNPWGQVEWNGPWSDDSPEWRSVSASEKKNLGLTFDDDGEFWMSFEDFLRHFDKVEICNLNPDSLE 315 (318)
T ss_pred -CeEEEEEECCCCCCCcCCCCCCCCccccccCHHHHHHhCCCCCCCCEEEEEhHHHHhhCCeEEEeccCCcccc
Confidence 2569999999999999999992 99999999999999999986654443
No 6
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification. ; InterPro: IPR001300 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. Calpains are a family of cytosolic cysteine proteinases (see PDOC00126 from PROSITEDOC). Members of the calpain family are believed to function in various biological processes, including integrin-mediated cell migration, cytoskeletal remodeling, cell differentiation and apoptosis [, ]. The calpain family includes numerous members from C. elegans to mammals and with homologues in yeast and bacteria. The best characterised members are the m- and mu-calpains, both proteins are heterodimer composed of a large catalytic subunit and a small regulatory subunit. The large subunit comprises four domains (dI-dIV) while the small subunit has two domains (dV-dVI). Domain dI is a short region cleaved by autolysis, dII is the catalytic core, dIII is a C2-like domain, dIV consists of five calcium binding EF-hand motifs []. The crystal structure of calpain has been solved [, ]. The catalytic region consists of two distinct structural domains (dIIa and dIIb). dIIa contains a central helix flanked on three faces by a cluster of alpha-helices and is entirely unrelated to the corresponding domain in the typical thiol proteinases. The fold of dIIb is similar to the corresponding domain in other cysteine proteinases and contains two three-stranded anti-parallel beta-sheets. The catalytic triad residues (C,H,N) are located in dIIa and dIIb. The activation of the domain is dependent on the binding of two calcium atoms in two non EF-hand calcium binding sites located in the catalytic core, one close to the Cys active site in dIIa and one at the end of dIIb. Calcium-binding induced conformational changes in the catalytic domain which align the active site [][]. The profile covers the whole catalytic domain.; GO: 0004198 calcium-dependent cysteine-type endopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 2NQA_A 1KFU_L 1KFX_L 1QXP_B 2R9C_A 1TL9_A 2G8E_A 1KXR_B 2G8J_A 2NQG_A ....
Probab=100.00 E-value=1.6e-47 Score=437.79 Aligned_cols=256 Identities=30% Similarity=0.518 Sum_probs=207.6
Q ss_pred ccCccccccccccCcCCccccccCCCCcccccccccccccccccccCCCCcccccchhhhH--HHHHhhcccCcccccee
Q psy13030 832 QMTGWRSLRYNQNNLGELSWLAEDGGPVTMLEAARISFYGCYENLTHGGSTTRALQDLTGG--IVQSFALTNQDRYLTFQ 909 (1218)
Q Consensus 832 ~~~~w~sl~~~~~~~g~~~W~r~~~~p~e~~~~~~~~~~~~~~~~~~~~s~~di~Qg~lGd--~vAsla~~a~~~~~~~~ 909 (1218)
|++.-.|+.+++.....+.|+| |.|++++|+ ++.++.+..||.||.+|| +|||||++|..+.+...
T Consensus 7 Fpp~~~Sl~~~~~~~~~~~W~R----~~e~~~~~~--------~~~~~~~~~di~QG~lgDc~llaaL~~la~~~~~i~~ 74 (298)
T PF00648_consen 7 FPPNDSSLGFDDQKPKNVEWKR----PSEICENPQ--------FFIDGISPSDIRQGSLGDCWLLAALAALAEHPDLIKK 74 (298)
T ss_dssp S-SSHHHHTSSTTSTTT-EEE-----HHHHSSS-B--------SSSSSSSGGGEBE-SSSSHHHHHHHHHHTTSHHHHHH
T ss_pred CccCccccccCCCCCCcceeEe----chhcCCCCe--------EEECCCccccccccccCChhHHHHHHHHHhccccccc
Confidence 5777788887776667899999 999998765 357899999999999999 99999999987765555
Q ss_pred ccc-------CCCCcceEEEccCCeEEEEEecCCCCCCCCcEEEEccCCCCchHHHHHHHhhhcccCCcccccCCCChHH
Q psy13030 910 VLN-------SAVPRSSLLISSIKLWKEILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTR 982 (1218)
Q Consensus 910 ~~~-------~~~~~~~v~l~~~G~w~~V~IDD~lP~~~g~~~f~~s~~~~e~W~~LlEKAyAKl~G~Y~~l~~gg~~~~ 982 (1218)
+++ +..+.|.|+||.+|+|++|+|||+||+.+|+++|+++++++++||+||||||||++|||.+|. ||++.+
T Consensus 75 i~~~~~~~~~~~~G~y~v~l~~~G~w~~V~VDd~lP~~~g~~~f~~s~~~~elW~~LlEKAyAKl~GsY~~l~-gg~~~~ 153 (298)
T PF00648_consen 75 IFPVNQSFNENYNGIYTVRLFKNGEWREVTVDDRLPCKNGKPLFARSSDPNELWPSLLEKAYAKLHGSYSALE-GGNPSE 153 (298)
T ss_dssp HS-SS--SSTT-SSEEEEEEEETTEEEEEEEES-EEEETTEESSSBESSTTB-HHHHHHHHHHHHTTSSGGGS-SBSHHH
T ss_pred ccccccccccccCceeeEeeccCCeeeeeccchhhhccccceeeeccCCcccchhhhhhchhhhccccccccC-CCChhh
Confidence 542 125889999999999999999999999999999999889999999999999999999999996 999999
Q ss_pred HHhhccCCeeEEEECcCcCh-hhHHHHHHHhCCCCCEEEEcccCchHHHHhhhhcCCCccCCceeeccEEEEccCCCeee
Q psy13030 983 ALQDLTGGIVQSFALTNQDR-YLTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAYSVTGLARVRGPLGETP 1061 (1218)
Q Consensus 983 aL~~LTG~~~~~~~l~~~~~-~~~~~~l~~~~~~~~li~~~~~~~~~~~~~~~~~~GLv~~HaYsVl~~~~~~~~~~~~r 1061 (1218)
||++|||++++.+.+.+... ..+|+.+.+.++++.++.+.+........+.....||+++|||+|++++++.+.+..++
T Consensus 154 al~~LTG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~HaY~Vl~~~~~~~~~~~~~ 233 (298)
T PF00648_consen 154 ALQDLTGGPPESIDLRDDSSDDELWELWKKLLKSGSLVGCSTGSSTPFDSEEYEKNGLVPGHAYAVLDVREVNGNGEGHR 233 (298)
T ss_dssp HHHHHHSSEEEEEEGGG--T--THHHHHHHHHHCT-EEEEE--SSSGGGTTSBCTTSBBTTS-EEEEEEEEEEETTEEEE
T ss_pred hhHhhcCCcceeeeccccchhhhHHHHHHHHHHhccccccccccccccccccccccCcccceeEEEEEEEeeccccceeE
Confidence 99999999999999976543 56888888888999988877655433444445779999999999999999887555689
Q ss_pred EEEEeCCCCCCccCCcccc-------------------------ccccchhhhccCCcccccce
Q psy13030 1062 LVRLRNPWARGEWTGPWSE-------------------------FFLNFSAYLLEKPSLDMCKS 1100 (1218)
Q Consensus 1062 lv~LrNPWg~~ew~G~ws~-------------------------fwm~~~df~~~f~sl~icr~ 1100 (1218)
||+||||||..+|+|+||+ |||+|+||+++|.++++|+.
T Consensus 234 lv~LrNPwg~~~w~G~ws~~s~~W~~~~~~~~~~~~~~~~~dg~FWM~~~df~~~F~~i~vc~~ 297 (298)
T PF00648_consen 234 LVKLRNPWGSTEWKGDWSDDSPEWTEIHPSLRKRLNQSSSDDGTFWMSFEDFLKYFSSIYVCRL 297 (298)
T ss_dssp EEEEE-TTSS---SSTTSTTSGGGGGS-HHHHHHHTTTSSSSSEEEEEHHHHHHHSEEEEEEES
T ss_pred EEEEcCCCccccccccccccccccccCCHHHHhhcccccccCccHhHhHHHHHhhCCceEEEee
Confidence 9999999999999999992 99999999999999999984
No 7
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=100.00 E-value=4.9e-46 Score=427.76 Aligned_cols=243 Identities=35% Similarity=0.580 Sum_probs=211.2
Q ss_pred CcCCccccccCCCCcccccccccccccccccccCCCCcccccchhhhH--HHHHhhcccCccccceeccc-------CCC
Q psy13030 845 NLGELSWLAEDGGPVTMLEAARISFYGCYENLTHGGSTTRALQDLTGG--IVQSFALTNQDRYLTFQVLN-------SAV 915 (1218)
Q Consensus 845 ~~g~~~W~r~~~~p~e~~~~~~~~~~~~~~~~~~~~s~~di~Qg~lGd--~vAsla~~a~~~~~~~~~~~-------~~~ 915 (1218)
....+.|+| |.|++.... .+.+.++.+++++.||.||.+|| |+||||++|+.+.+...++. +..
T Consensus 36 ~~~~~~W~R----p~~~~~~~~---~~~~~~~~~~~~~~dI~QG~lgDC~~lsaL~~la~~~~~i~~lf~~~~~~~~~~~ 108 (315)
T cd00044 36 PKKVIEWKR----PSEIFADDG---NSNPRLFVNGASPSDVCQGILGDCWFLAALAALAERPELLKRVIPPDQSFEENYA 108 (315)
T ss_pred CcCcceEEC----cHHHhCccc---CCCCEEEeCCCChhhcccCcccchHHHHHHHHHHcCHHHHhheEcCCcccccCcC
Confidence 345789999 999987632 13455678999999999999999 99999999987765555543 346
Q ss_pred CcceEEEccCCeEEEEEecCCCCCCCCcEEEEccCCCCchHHHHHHHhhhcccCCcccccCCCChHHHHhhccCCeeEEE
Q psy13030 916 PRSSLLISSIKLWKEILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGGIVQSF 995 (1218)
Q Consensus 916 ~~~~v~l~~~G~w~~V~IDD~lP~~~g~~~f~~s~~~~e~W~~LlEKAyAKl~G~Y~~l~~gg~~~~aL~~LTG~~~~~~ 995 (1218)
|.|.|+|+.+|+|++|+|||+||+..+.++|+++.+.+++||+||||||||+||||++|. ||++.+||++|||++++.+
T Consensus 109 G~y~v~l~~~G~w~~V~VDD~lP~~~~~~~~~~s~~~~e~W~~LlEKAyAK~~GsY~~i~-gg~~~~al~~LTG~~~~~i 187 (315)
T cd00044 109 GIYHFRFWKNGEWVEVVIDDRLPTSNGGLLFMHSRDRNELWVALLEKAYAKLHGSYEALV-GGNTAEALEDLTGGPTERI 187 (315)
T ss_pred cEEEEEEEECCEEEEEEecCCCeecCCceEEEEECCCCeEcHHHHHHHHHhhcCCccccC-CCCHHHHHHHhhCCCcEEE
Confidence 899999999999999999999999877799999988899999999999999999999996 9999999999999999999
Q ss_pred ECcCcC----hhhHHHHHHHhCCCCCEEEEcccCchHHHHhhhhcCCCccCCceeeccEEEEccCCCeeeEEEEeCCCCC
Q psy13030 996 ALTNQD----RYLTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAYSVTGLARVRGPLGETPLVRLRNPWAR 1071 (1218)
Q Consensus 996 ~l~~~~----~~~~~~~l~~~~~~~~li~~~~~~~~~~~~~~~~~~GLv~~HaYsVl~~~~~~~~~~~~rlv~LrNPWg~ 1071 (1218)
.+.... .+.+|+.|.++.+.+.+|+|++....... .....||+++|||+|+++.+++. .+++||+||||||.
T Consensus 188 ~~~~~~~~~~~~~~~~~l~~~~~~~~lv~~~t~~~~~~~--~~~~~Gl~~~HaY~Vl~~~~~~~--~~~~lv~lrNPWg~ 263 (315)
T cd00044 188 DLKSADASSGDNDLFALLLSFLQGGSLIGCSTGSRSEEE--ARTANGLVKGHAYSVLDVREVQE--EGLRLLRLRNPWGV 263 (315)
T ss_pred EccccccccCHHHHHHHHHHHhhCCCEEEEEcCCCCcch--hhccCCcccCcceEEeEEEEEcc--CceEEEEecCCccC
Confidence 998753 57799999999999999999876543221 23569999999999999999872 23899999999999
Q ss_pred CccCCccc------------------------cccccchhhhccCCcccccc
Q psy13030 1072 GEWTGPWS------------------------EFFLNFSAYLLEKPSLDMCK 1099 (1218)
Q Consensus 1072 ~ew~G~ws------------------------~fwm~~~df~~~f~sl~icr 1099 (1218)
.+|+|+|| .|||+|+||+++|.++++|+
T Consensus 264 ~~w~G~ws~~~~~w~~~~~~~~~~~~~~~~dG~Fwm~~~df~~~F~~~~vc~ 315 (315)
T cd00044 264 GEWWGGWSDDSSEWWVIDAERKKLLLSGKDDGEFWMSFEDFLRNFDGLYVCN 315 (315)
T ss_pred CCccCCCCCCCchhccChHHHHHhcCCCCCCCEEEEEhHHhheeeCeEEEeC
Confidence 99999998 29999999999999999995
No 8
>KOG0045|consensus
Probab=100.00 E-value=2.9e-44 Score=434.67 Aligned_cols=263 Identities=37% Similarity=0.608 Sum_probs=231.3
Q ss_pred eeecccCccccccccccCc----CCccccccCCCCcccccccccccccccccccCCCCcccccchhhhH--HHHHhhccc
Q psy13030 828 LVHVQMTGWRSLRYNQNNL----GELSWLAEDGGPVTMLEAARISFYGCYENLTHGGSTTRALQDLTGG--IVQSFALTN 901 (1218)
Q Consensus 828 ~~~~~~~~w~sl~~~~~~~----g~~~W~r~~~~p~e~~~~~~~~~~~~~~~~~~~~s~~di~Qg~lGd--~vAsla~~a 901 (1218)
+...||..+.|+.+....+ ..+.|+| |.|++.+|+ ++..+.+++||.||.+|| ||||+|+++
T Consensus 28 ~D~~FP~~~~Sl~~~~~~p~~~~~~i~W~R----P~ei~~~p~--------~i~~~~~~~di~Qg~lgdCw~laA~a~la 95 (612)
T KOG0045|consen 28 VDALFPAADSSLFYKLSTPLAQFSDIVWKR----PQEICANPR--------LIVDGPSRFDVKQGLLGDCWFLAACAALA 95 (612)
T ss_pred cccCCCCCCccccccccCCCcccccceecC----cccccCCCC--------eecCCCCcceeEEeeecchHHHHHHHHhh
Confidence 5667788999998875422 3889999 999988876 358999999999999999 999999999
Q ss_pred Cccccceeccc-------CCCCcceEEEccCCeEEEEEecCCCCCCCCcEEEEccCCCCchHHHHHHHhhhcccCCcccc
Q psy13030 902 QDRYLTFQVLN-------SAVPRSSLLISSIKLWKEILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENL 974 (1218)
Q Consensus 902 ~~~~~~~~~~~-------~~~~~~~v~l~~~G~w~~V~IDD~lP~~~g~~~f~~s~~~~e~W~~LlEKAyAKl~G~Y~~l 974 (1218)
..+.+..++++ +..|.|+++|+++|+|++|+|||+||+.+++++|++++..+|||+|||||||||++|+|++|
T Consensus 96 ~~~~ll~~vip~~~~~~~~yaGif~f~~w~~G~W~~VvIDD~LP~~~~~~~~~~s~~~~efW~aLlEKAyaKl~GsY~~l 175 (612)
T KOG0045|consen 96 LRPELLDKVIPQDQSFQENYAGIFHFRFWQNGEWVEVVIDDRLPTSNGGLLFSHSSGKNEFWAALLEKAYAKLLGSYEAL 175 (612)
T ss_pred cCHHHHHhccCCCcccccccceEEEEEEEeCCeEEEEEeeeecceEcCCEEEEeecCCceeHHHHHHHHHHHHhCcccCC
Confidence 98887777776 25677789999999999999999999999999999998889999999999999999999999
Q ss_pred cCCCChHHHHhhccCCeeEEEECcCcChh---hHHHHHHHhCCCCCEEEEcccC--chHHHHhhhhcCCCccCCceeecc
Q psy13030 975 THGGSTTRALQDLTGGIVQSFALTNQDRY---LTFQVLNSAVPRSSLLISSIKL--EKEQKRQLRLRNGLITQHAYSVTG 1049 (1218)
Q Consensus 975 ~~gg~~~~aL~~LTG~~~~~~~l~~~~~~---~~~~~l~~~~~~~~li~~~~~~--~~~~~~~~~~~~GLv~~HaYsVl~ 1049 (1218)
. ||.+.+||.+|||++++.+.++..+.. .++..+..+.+++.+++|++.+ ....+.+....+||+++|||+|++
T Consensus 176 ~-gg~~~~a~~~lTG~~~e~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~c~~~~~~~~~~~~~~~~~~gL~~~HaYsit~ 254 (612)
T KOG0045|consen 176 H-GGSTIDALVDLTGGVTEPFDLNKTPKSFKNNLVWALLKSAHRGSLLLCSIESKDPTEEEEEAKLRNGLVKGHAYAITD 254 (612)
T ss_pred C-CCchhhHHHhccCCccceeEcccCcchhHHHHHHHHHHhhhccCceeeeccccccchhHHHHHhhcCccccccEEEEE
Confidence 6 999999999999999999999887663 5678888889999999998755 222222556789999999999999
Q ss_pred EEEEccCCCeeeEEEEeCCCCCCccCCccc-------------------------cccccchhhhccCCcccccceeee
Q psy13030 1050 LARVRGPLGETPLVRLRNPWARGEWTGPWS-------------------------EFFLNFSAYLLEKPSLDMCKSLIM 1103 (1218)
Q Consensus 1050 ~~~~~~~~~~~rlv~LrNPWg~~ew~G~ws-------------------------~fwm~~~df~~~f~sl~icr~li~ 1103 (1218)
++++++..+.++|++||||||+.+|+|.|| +|||+|+||+++|..+++|+....
T Consensus 255 ~~~~~~~~~~~~lirlrNPwg~~~W~G~wsd~~~~W~~v~~~~~~~~~~~~~~dGeFWms~~dF~~~F~~~~vC~~~~~ 333 (612)
T KOG0045|consen 255 VREVQGRGGKHRLIRLRNPWGESEWNGPWSDGSEEWHLVDKSKLSELGRQPLDDGEFWMSFDDFLREFDSLTVCRLRPD 333 (612)
T ss_pred EEEeecccccceeEEecCCcCCceeccccccCCcchhhhCHHHHhhcccccccCCCeeeeHHHHHhhCCeEeecCCCcc
Confidence 999999777899999999999999999999 399999999999999999996543
No 9
>cd00214 Calpain_III Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are separated by C2-like domain III. Domain III plays an important role in calcium-induced activation of calpain involving electrostatic interactions with subdomain II. Proposed to mediate calpain's interaction with phospholipids and translocation to cytoplasmic/nuclear membranes. CD includes subdomain III of typical and atypical calpains.
Probab=99.96 E-value=4e-29 Score=256.24 Aligned_cols=145 Identities=34% Similarity=0.632 Sum_probs=128.1
Q ss_pred CcEEEeeeeeeeecccCCCCCCccCCccCCCeEEEEeccCC--CCceEEEEEEeecccchhhhhccCceeeEEEEEEEEc
Q psy13030 449 PWRAVLARRRWRTGYNAGGGPNFVETTSVNPQFHIQIPRSS--NNKCHVVVSVTQYYETQVDEKQKRTLYAIGFAVYEIS 526 (1218)
Q Consensus 449 ~W~~~~~~G~W~~g~taGG~~n~~~Tf~~NPQy~l~l~~~~--~~~~~V~VsL~Q~~~R~~~~~~~~~~~~Igf~V~kv~ 526 (1218)
.|+...++|+|++|.|||||+|+.+||++||||.|+|.+++ +..|+|+|+|+|+++|. .++.+.+..+|||+||+++
T Consensus 2 ~W~~~~~~G~W~~g~tAGGc~~~~~tf~~NPQf~l~v~~~~~~~~~~~v~i~L~q~~~r~-~~~~~~~~~~IGf~v~~~~ 80 (150)
T cd00214 2 KWHTKSFNGEWRRGQTAGGCRNNPDTFWTNPQFRIRVPEPDDDEGKCTVLIALMQKNRRH-LRKKGLDLLTIGFHVYKVP 80 (150)
T ss_pred cceEEEEeCeEeCCcccCCCCCcccccccCceEEEEecCCCCCCCccEEEEEeccCCcch-hcccCCCcceEEEEEEEeC
Confidence 59999999999999999999999999999999999998542 12399999999999887 5566677899999999997
Q ss_pred CCCcccCcccccccCCCccCCccc-eeeeEEEEEecCCCeEEeeccCCCCCCcceeEEEecccccceeeecCCCCCCCCC
Q psy13030 527 SSMTRLTPQFVAHTKPLDVTNHSV-AREVVTFFTLPPGDFIVVPQTNVPDCDGKFLLRIFTDEQRDFIVVPQTNVPDCDG 605 (1218)
Q Consensus 527 ~~~~~l~~~~f~~~~~~~~s~~~~-~ReVs~r~~L~PG~YvIIPsT~~p~~~~~f~l~~~~~~~~~~~~~~~~~~~~~e~ 605 (1218)
....++++.+|..+.+++.+..|. .|+|+.++.|+||.|+||||||+|+ ++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~s~~~~~~rev~~~~~L~pG~YvIIPsT~~p~---------------------------~~g 133 (150)
T cd00214 81 GENRHLRRDFFLHKAPRARSSTFINTREVSLRFRLPPGEYVIVPSTFEPG---------------------------EEG 133 (150)
T ss_pred CcCcccChhhhhccCcccccCccccccEEEEEEEcCCCCEEEEeeecCCC---------------------------Ccc
Confidence 644467888888888888888888 9999999999999999999999999 999
Q ss_pred CeeeeeeccCcccccc
Q psy13030 606 KFLLRIFTDEQSNIWE 621 (1218)
Q Consensus 606 ~F~LRVfS~~~~~~~e 621 (1218)
+|+|||||+++....+
T Consensus 134 ~F~LrVfs~~~~~~~~ 149 (150)
T cd00214 134 EFLLRVFSEKSIKSSE 149 (150)
T ss_pred cEEEEEEecCCCcccc
Confidence 9999999998876554
No 10
>smart00720 calpain_III calpain_III.
Probab=99.95 E-value=1.2e-27 Score=243.87 Aligned_cols=140 Identities=31% Similarity=0.654 Sum_probs=124.6
Q ss_pred cEEEeeeeeeeecccCCCCCCccCCccCCCeEEEEeccCCCCceEEEEEEeecccchhhhhccCceeeEEEEEEEEcCCC
Q psy13030 450 WRAVLARRRWRTGYNAGGGPNFVETTSVNPQFHIQIPRSSNNKCHVVVSVTQYYETQVDEKQKRTLYAIGFAVYEISSSM 529 (1218)
Q Consensus 450 W~~~~~~G~W~~g~taGG~~n~~~Tf~~NPQy~l~l~~~~~~~~~V~VsL~Q~~~R~~~~~~~~~~~~Igf~V~kv~~~~ 529 (1218)
|+...++|+|++|.+||||+|++.||++||||.|++.++....|+|+|+|+|+++|. .+..+....+|||+||+++...
T Consensus 1 w~~~~~~G~W~~~~tAGG~~~~~~tf~~NPqy~l~v~~~~~~~~~v~i~L~q~~~r~-~~~~~~~~~~iGf~v~~~~~~~ 79 (143)
T smart00720 1 WHTKSVQGSWTRGQTAGGCRNYPATFWTNPQFRITLEEPDDDDCTVLIALMQKNRRR-LRRKGADFLTIGFAVYKVPKEL 79 (143)
T ss_pred CcEEEEeCeEECCCccCCccccccccccCCeEEEEecCCCCCceEEEEEecccCccc-ccccCCccceEeEEEEEecccc
Confidence 889999999999999999999999999999999999865545599999999999987 4555667889999999997643
Q ss_pred cccCcccccccCCCccCCccc-eeeeEEEEEecCCCeEEeeccCCCCCCcceeEEEecccccceeeecCCCCCCCCCCee
Q psy13030 530 TRLTPQFVAHTKPLDVTNHSV-AREVVTFFTLPPGDFIVVPQTNVPDCDGKFLLRIFTDEQRDFIVVPQTNVPDCDGKFL 608 (1218)
Q Consensus 530 ~~l~~~~f~~~~~~~~s~~~~-~ReVs~r~~L~PG~YvIIPsT~~p~~~~~f~l~~~~~~~~~~~~~~~~~~~~~e~~F~ 608 (1218)
++++.++....+++.+..|. .|+|+.++.|+||.|+||||||+|+ ++|+|+
T Consensus 80 -~~~~~~~~~~~~~~~s~~y~~~r~v~~~~~L~~G~Y~iVPsT~~p~---------------------------~~g~F~ 131 (143)
T smart00720 80 -HLRRDFFLSNAPRASSGDYINGREVSERFRLPPGEYVIVPSTFEPN---------------------------QEGDFL 131 (143)
T ss_pred -ccchhhhhccCccccccccccCeEEEEEEEcCCCCEEEEEeecCCC---------------------------CccCEE
Confidence 57788888888888888898 9999999999999999999999999 899999
Q ss_pred eeeeccCccc
Q psy13030 609 LRIFTDEQSN 618 (1218)
Q Consensus 609 LRVfS~~~~~ 618 (1218)
|||||+.+..
T Consensus 132 LrV~s~~~~~ 141 (143)
T smart00720 132 LRVFSEGPFK 141 (143)
T ss_pred EEEEecCccc
Confidence 9999987654
No 11
>PF01067 Calpain_III: Calpain large subunit, domain III; InterPro: IPR022682 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. This entry represents domain III. It is found in association with PF00648 from PFAM. The function of the domain III and I are currently unknown. Domain II is a cysteine protease and domain IV is a calcium binding domain. Calpains are believed to participate in intracellular signaling pathways mediated by calcium ions. ; PDB: 1QXP_B 2QFE_A 1DF0_A 1U5I_A 3DF0_A 3BOW_A 1KFU_L 1KFX_L.
Probab=99.91 E-value=1e-24 Score=223.56 Aligned_cols=143 Identities=34% Similarity=0.623 Sum_probs=111.5
Q ss_pred CcEEEeeeeeeeecccCCCCCCccCCccCCCeEEEEeccCCC--CceEEEEEEeecccchhhhhccCceeeEEEEEEEEc
Q psy13030 449 PWRAVLARRRWRTGYNAGGGPNFVETTSVNPQFHIQIPRSSN--NKCHVVVSVTQYYETQVDEKQKRTLYAIGFAVYEIS 526 (1218)
Q Consensus 449 ~W~~~~~~G~W~~g~taGG~~n~~~Tf~~NPQy~l~l~~~~~--~~~~V~VsL~Q~~~R~~~~~~~~~~~~Igf~V~kv~ 526 (1218)
+|+...++|+|++|.+||||++++.||++||||.|+++.+.. .+|+|+|+|+|++++. .+..+....+|||+||++.
T Consensus 1 ~W~~~~~~G~W~~~~taGG~~~~~~s~~~NPQy~l~v~~~~~~~~~~~v~i~L~q~~~~~-~~~~~~~~~~Ig~~v~~~~ 79 (147)
T PF01067_consen 1 KWHTVTIEGEWVTGNTAGGCPNNPYSWWNNPQYRLTVSEPTEESNKCTVVISLMQKDRRR-KRDVGEKDLPIGFYVFKVQ 79 (147)
T ss_dssp EEEEEEEEEEE-TTTS---STT-TTTGGGS-EEEEEESSGCCCSSBEEEEEEEEECSGCC-GCSTTTTTSEEEEEEEEET
T ss_pred CeeEEEEeCEEeCCCcCCCCcccccccccCcEEEEEEcCCCCCcceeEEEEEEEecCcch-hhcccccceEEeEEEEeee
Confidence 499999999998899999999999999999999999985443 2689999999999987 4444557889999999994
Q ss_pred CCCcccCcccccccCCCccCCccc-eeeeEEEEEecCCCeEEeeccCCCCCCcceeEEEecccccceeeecCCCCCCCCC
Q psy13030 527 SSMTRLTPQFVAHTKPLDVTNHSV-AREVVTFFTLPPGDFIVVPQTNVPDCDGKFLLRIFTDEQRDFIVVPQTNVPDCDG 605 (1218)
Q Consensus 527 ~~~~~l~~~~f~~~~~~~~s~~~~-~ReVs~r~~L~PG~YvIIPsT~~p~~~~~f~l~~~~~~~~~~~~~~~~~~~~~e~ 605 (1218)
.....+++.++.....++.+..|. .|+|+.++.|+||.|+|||||++|+ ++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~L~~G~YvIVPsT~~~~---------------------------~~g 132 (147)
T PF01067_consen 80 SQQKRLPRQYFLFNKPVVSSGDYSNSREVSEEFTLPPGTYVIVPSTYEPG---------------------------QEG 132 (147)
T ss_dssp TTTSE--HHHHHTS-SSEE-SSEBSSSEEEEEEEE-SEEEEEEEEESSTT-----------------------------E
T ss_pred cccccCCcceeccccceeeccccccceEEEEEEEcCCCCEEEEEecCCCC---------------------------Cee
Confidence 434467777777777888888999 9999999999999999999999999 889
Q ss_pred CeeeeeeccCcccc
Q psy13030 606 KFLLRIFTDEQSNI 619 (1218)
Q Consensus 606 ~F~LRVfS~~~~~~ 619 (1218)
+|+|||||+.++.+
T Consensus 133 ~F~L~v~s~~~~~l 146 (147)
T PF01067_consen 133 EFTLRVFSDSPFEL 146 (147)
T ss_dssp EEEEEEEESSSEEE
T ss_pred eEEEEEEECCCccc
Confidence 99999999877643
No 12
>KOG0037|consensus
Probab=99.86 E-value=1.7e-22 Score=209.05 Aligned_cols=115 Identities=23% Similarity=0.436 Sum_probs=111.3
Q ss_pred CcccccceeeeeeccCCCcccccccHHHHHHHhHHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC
Q psy13030 1093 PSLDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT 1172 (1218)
Q Consensus 1093 ~sl~icr~li~~~D~d~~G~i~f~eF~~l~~~~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d 1172 (1218)
+++++||+||.++|.+.+|+|+|.||.+||+.|+.|+.+|+.||+|+||+|+..||++||..||+.|+++.++.|+++||
T Consensus 91 Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd 170 (221)
T KOG0037|consen 91 FSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYD 170 (221)
T ss_pred CCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -C-CCCcCHHHHHHHHHHHHHhcCCCchhhhHhhhccccccCCCCCcC
Q psy13030 1173 -K-NKVLTWENFIMAMVRLHLAHGHPNDYLFLTLFMFKKTDVDQIGEV 1218 (1218)
Q Consensus 1173 -~-dG~i~f~eFv~~~~~l~~~~~~~~~~~~~~~~~F~~~D~d~~G~I 1218 (1218)
. +|.|+||+||+|++.|+.+ +++|+++|++.+|.|
T Consensus 171 ~~~~g~i~FD~FI~ccv~L~~l-----------t~~Fr~~D~~q~G~i 207 (221)
T KOG0037|consen 171 RFGGGRIDFDDFIQCCVVLQRL-----------TEAFRRRDTAQQGSI 207 (221)
T ss_pred cccCCceeHHHHHHHHHHHHHH-----------HHHHHHhccccceeE
Confidence 4 8999999999999999987 999999999999976
No 13
>KOG0037|consensus
Probab=99.65 E-value=7.8e-18 Score=174.63 Aligned_cols=136 Identities=15% Similarity=0.154 Sum_probs=116.9
Q ss_pred ChhhHHHHHHHhcCCCCccCHHHHHHHHhhhccCcccccCCCceeeeeeccCCCCccChHHHHHHHHHHHHHhhhccccc
Q psy13030 643 LPDGKSLVAKLLVKYPLEVDVSQFQKILRSHWKENTVVLPDGKSLVAKLLVKYPLEVDVSQFQKILRSHWKEKLEGIKNN 722 (1218)
Q Consensus 643 ~~~~~~lF~~~ag~~d~ei~a~eLq~~Ln~~~~~~~~~~~~crs~v~~~d~~~~g~l~~~ef~~l~~~~w~~~~~~~~~~ 722 (1218)
..+....|.++.-+..+.|++.|||+.|... .++.|+++|||+||+|||++.+|+++++||++| |+ .+++|++.
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~-~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~L----w~-~i~~Wr~v 129 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNG-TWSPFSIETCRLMISMFDRDNSGTIGFKEFKAL----WK-YINQWRNV 129 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcC-CCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHH----HH-HHHHHHHH
Confidence 3456667777753325678888888877542 467899999999999999999999999999999 99 89999999
Q ss_pred eEEEEecCCchhHHHhhhhcCCceecchhhhccceeeeCCCCCcceeeecCCCCcCcccccCCCCCcccccCCHHHHHhh
Q psy13030 723 VLTVLILPDGKSLVAKLLVKYPLEVDHAYSVTGLARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELL 802 (1218)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~hays~~~~~~~~~~~~~~~l~~lrnp~g~~~w~G~wsd~s~~w~~~~~~~~~~l 802 (1218)
|-.+|.+++|+...+++ +.|...+ | ++|+++..+.|
T Consensus 130 F~~~D~D~SG~I~~sEL--------~~Al~~~---------------------------G---------y~Lspq~~~~l 165 (221)
T KOG0037|consen 130 FRTYDRDRSGTIDSSEL--------RQALTQL---------------------------G---------YRLSPQFYNLL 165 (221)
T ss_pred HHhcccCCCCcccHHHH--------HHHHHHc---------------------------C---------cCCCHHHHHHH
Confidence 99999999999888888 6666666 7 99999999999
Q ss_pred cceecCCCccccCHHHHHhhcceeee
Q psy13030 803 SIRVSNDGEFWMSFEDFAKHFTHLDL 828 (1218)
Q Consensus 803 ~~~~~~~g~f~m~f~df~~~~~~~~~ 828 (1218)
.+||.+.|..-|.|||||+|.+.|.+
T Consensus 166 v~kyd~~~~g~i~FD~FI~ccv~L~~ 191 (221)
T KOG0037|consen 166 VRKYDRFGGGRIDFDDFIQCCVVLQR 191 (221)
T ss_pred HHHhccccCCceeHHHHHHHHHHHHH
Confidence 99999887889999999999999998
No 14
>KOG0027|consensus
Probab=99.35 E-value=8.3e-13 Score=136.09 Aligned_cols=92 Identities=20% Similarity=0.299 Sum_probs=84.0
Q ss_pred ccceeeeeeccCCCcccccccHHHHHHHh-----------HHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHH
Q psy13030 1097 MCKSLIMLRDTNISGRLNLLDIPLLMHML-----------QFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLE 1165 (1218)
Q Consensus 1097 icr~li~~~D~d~~G~i~f~eF~~l~~~~-----------~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~ 1165 (1218)
--+.++...|.+++|.|+|.||+.++... +++++||+.||+|++|+|+..||+++|+.+|.+++.++++
T Consensus 45 el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~ 124 (151)
T KOG0027|consen 45 ELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECK 124 (151)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHH
Confidence 34567888999999999999999999742 2889999999999999999999999999999999999999
Q ss_pred HHHHHhC--CCCCcCHHHHHHHHHH
Q psy13030 1166 CLVLRFT--KNKVLTWENFIMAMVR 1188 (1218)
Q Consensus 1166 ~li~~~d--~dG~i~f~eFv~~~~~ 1188 (1218)
.|++.+| +||.|+|++|+++|..
T Consensus 125 ~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 125 EMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 9999999 7999999999997653
No 15
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.34 E-value=2.8e-12 Score=130.22 Aligned_cols=92 Identities=22% Similarity=0.272 Sum_probs=80.2
Q ss_pred HHhHHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC-CCCCcCHHHHHHHHHHHHHhcCCCchhhh
Q psy13030 1123 HMLQFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT-KNKVLTWENFIMAMVRLHLAHGHPNDYLF 1201 (1218)
Q Consensus 1123 ~~~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d-~dG~i~f~eFv~~~~~l~~~~~~~~~~~~ 1201 (1218)
..+++|++||..||+|++|.|+..||..+|+.+|+.++++++..|+..+| +.+.|+|.+|+.+|..... ..++.+++
T Consensus 17 ~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~~~~-~~~~~Eel- 94 (160)
T COG5126 17 EQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKLK-RGDKEEEL- 94 (160)
T ss_pred HHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCHHHHHHHHHHHhc-cCCcHHHH-
Confidence 35789999999999999999999999999999999999999999999999 6788999999996665443 45556677
Q ss_pred HhhhccccccCCCCCcC
Q psy13030 1202 LTLFMFKKTDVDQIGEV 1218 (1218)
Q Consensus 1202 ~~~~~F~~~D~d~~G~I 1218 (1218)
..||+.||+|++|+|
T Consensus 95 --~~aF~~fD~d~dG~I 109 (160)
T COG5126 95 --REAFKLFDKDHDGYI 109 (160)
T ss_pred --HHHHHHhCCCCCcee
Confidence 566666699999997
No 16
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.33 E-value=1.7e-12 Score=131.78 Aligned_cols=89 Identities=20% Similarity=0.268 Sum_probs=81.8
Q ss_pred ceeeeeeccCCCcccccccHHHHHHH-------hHHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHh
Q psy13030 1099 KSLIMLRDTNISGRLNLLDIPLLMHM-------LQFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRF 1171 (1218)
Q Consensus 1099 r~li~~~D~d~~G~i~f~eF~~l~~~-------~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~ 1171 (1218)
..|+..+|. +++.|+|.+|+.+|.. .+++++||+.||+|++|+|+..||+.+|+.+|+++++++++.|++.+
T Consensus 59 ~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~ 137 (160)
T COG5126 59 NKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEY 137 (160)
T ss_pred HHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhc
Confidence 347778888 8999999999999973 47899999999999999999999999999999999999999999999
Q ss_pred C--CCCCcCHHHHHHHHHH
Q psy13030 1172 T--KNKVLTWENFIMAMVR 1188 (1218)
Q Consensus 1172 d--~dG~i~f~eFv~~~~~ 1188 (1218)
| +||.|+|++|++++..
T Consensus 138 d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 138 DEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred CCCCCceEeHHHHHHHHhc
Confidence 9 7999999999997654
No 17
>KOG0027|consensus
Probab=99.30 E-value=5.7e-12 Score=129.90 Aligned_cols=95 Identities=20% Similarity=0.219 Sum_probs=79.0
Q ss_pred HhHHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC--CCCCcCHHHHHHHHHHHHHhcCCCchhhh
Q psy13030 1124 MLQFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT--KNKVLTWENFIMAMVRLHLAHGHPNDYLF 1201 (1218)
Q Consensus 1124 ~~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d--~dG~i~f~eFv~~~~~l~~~~~~~~~~~~ 1201 (1218)
.+.++++||+.||+|++|+|+..||+.+|+.+|.+++.+++..|+.++| +||.|+|++|+.+|.+.........+...
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~ 85 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSE 85 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHH
Confidence 3578899999999999999999999999999999999999999999999 68999999999977766542222111122
Q ss_pred HhhhccccccCCCCCcC
Q psy13030 1202 LTLFMFKKTDVDQIGEV 1218 (1218)
Q Consensus 1202 ~~~~~F~~~D~d~~G~I 1218 (1218)
+..+||+.||+|++|+|
T Consensus 86 el~eaF~~fD~d~~G~I 102 (151)
T KOG0027|consen 86 ELKEAFRVFDKDGDGFI 102 (151)
T ss_pred HHHHHHHHHccCCCCcC
Confidence 33677777799999997
No 18
>KOG0028|consensus
Probab=99.14 E-value=1.1e-10 Score=115.54 Aligned_cols=90 Identities=18% Similarity=0.234 Sum_probs=79.2
Q ss_pred hHHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC--CCCCcCHHHHHHHHHHHHHhcCCCchhhhH
Q psy13030 1125 LQFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT--KNKVLTWENFIMAMVRLHLAHGHPNDYLFL 1202 (1218)
Q Consensus 1125 ~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d--~dG~i~f~eFv~~~~~l~~~~~~~~~~~~~ 1202 (1218)
-++++++|..||.|++|+|+..||+.||+++|+.+..++|..|+.++| +.|.|+|++|+..|... ....++.+++
T Consensus 32 ~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k-~~e~dt~eEi-- 108 (172)
T KOG0028|consen 32 KQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVK-LGERDTKEEI-- 108 (172)
T ss_pred HhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHH-HhccCcHHHH--
Confidence 367889999999999999999999999999999999999999999999 57889999999965543 3356677776
Q ss_pred hhhccccccCCCCCcC
Q psy13030 1203 TLFMFKKTDVDQIGEV 1218 (1218)
Q Consensus 1203 ~~~~F~~~D~d~~G~I 1218 (1218)
..||+.+|-|++|.|
T Consensus 109 -~~afrl~D~D~~Gki 123 (172)
T KOG0028|consen 109 -KKAFRLFDDDKTGKI 123 (172)
T ss_pred -HHHHHcccccCCCCc
Confidence 788888899999976
No 19
>KOG0028|consensus
Probab=99.12 E-value=1e-10 Score=115.92 Aligned_cols=90 Identities=20% Similarity=0.268 Sum_probs=82.7
Q ss_pred cceeeeeeccCCCcccccccHHHHHHH-------hHHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHH
Q psy13030 1098 CKSLIMLRDTNISGRLNLLDIPLLMHM-------LQFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLR 1170 (1218)
Q Consensus 1098 cr~li~~~D~d~~G~i~f~eF~~l~~~-------~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~ 1170 (1218)
...|+..+|.+++|.|+|++|...|+. ..+++.+|+.||-|++|.|+..+|+.+++.||.+++++|+.+||.+
T Consensus 71 i~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeE 150 (172)
T KOG0028|consen 71 ILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEE 150 (172)
T ss_pred HHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHH
Confidence 345888999999999999999999874 3688999999999999999999999999999999999999999999
Q ss_pred hC--CCCCcCHHHHHHHHH
Q psy13030 1171 FT--KNKVLTWENFIMAMV 1187 (1218)
Q Consensus 1171 ~d--~dG~i~f~eFv~~~~ 1187 (1218)
+| +||.|+-+||+.+|.
T Consensus 151 Ad~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 151 ADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred hcccccccccHHHHHHHHh
Confidence 99 789999999998654
No 20
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.01 E-value=6.4e-10 Score=103.29 Aligned_cols=68 Identities=18% Similarity=0.240 Sum_probs=63.2
Q ss_pred HhHHHHHHHHhccC-CCCCcCCHhhHHHHHHh-cCCCCCH-HHHHHHHHHhC--CCCCcCHHHHHHHHHHHHH
Q psy13030 1124 MLQFWRIAFQKFEK-GARSRLSSYSLRPLLWE-AGSTVSN-KVLECLVLRFT--KNKVLTWENFIMAMVRLHL 1191 (1218)
Q Consensus 1124 ~~~~~~~~F~~fD~-d~~G~I~~~EL~~aL~~-lG~~ls~-~ei~~li~~~d--~dG~i~f~eFv~~~~~l~~ 1191 (1218)
.+..++++|+.||+ |++|+|+..||+.+|+. +|..+++ +++++||+.+| +||.|+|+||+.+|.++..
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 46788999999999 99999999999999999 9999999 99999999999 7999999999998888754
No 21
>KOG0030|consensus
Probab=98.96 E-value=1e-09 Score=106.34 Aligned_cols=77 Identities=17% Similarity=0.312 Sum_probs=70.3
Q ss_pred cccccccHHHHHHHh---------HHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC-CCCCcCHH
Q psy13030 1111 GRLNLLDIPLLMHML---------QFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT-KNKVLTWE 1180 (1218)
Q Consensus 1111 G~i~f~eF~~l~~~~---------~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d-~dG~i~f~ 1180 (1218)
-+|+|++|+.++..+ +++-+..+.||++++|+|...|||++|..||.+++++|++.|+.... .+|.|+|+
T Consensus 64 ~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~eD~nG~i~YE 143 (152)
T KOG0030|consen 64 KRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQEDSNGCINYE 143 (152)
T ss_pred hhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccccccCCcCcHH
Confidence 579999999999765 45668899999999999999999999999999999999999999887 78999999
Q ss_pred HHHHHHH
Q psy13030 1181 NFIMAMV 1187 (1218)
Q Consensus 1181 eFv~~~~ 1187 (1218)
.||+.++
T Consensus 144 ~fVk~i~ 150 (152)
T KOG0030|consen 144 AFVKHIM 150 (152)
T ss_pred HHHHHHh
Confidence 9999765
No 22
>PTZ00183 centrin; Provisional
Probab=98.92 E-value=1.2e-09 Score=112.93 Aligned_cols=93 Identities=19% Similarity=0.260 Sum_probs=83.6
Q ss_pred cccceeeeeeccCCCcccccccHHHHHHHh-------HHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHH
Q psy13030 1096 DMCKSLIMLRDTNISGRLNLLDIPLLMHML-------QFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLV 1168 (1218)
Q Consensus 1096 ~icr~li~~~D~d~~G~i~f~eF~~l~~~~-------~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li 1168 (1218)
..+..++..+|.+++|.|+|.||+.++... ..++++|+.+|+|++|+|+..|++.+|..+|..++++++..|+
T Consensus 53 ~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~ 132 (158)
T PTZ00183 53 EEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMI 132 (158)
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 356777888999999999999999887642 4788999999999999999999999999999999999999999
Q ss_pred HHhC--CCCCcCHHHHHHHHHH
Q psy13030 1169 LRFT--KNKVLTWENFIMAMVR 1188 (1218)
Q Consensus 1169 ~~~d--~dG~i~f~eFv~~~~~ 1188 (1218)
..+| ++|.|+|++|+.++..
T Consensus 133 ~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 133 DEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHhCCCCCCcCcHHHHHHHHhc
Confidence 9999 6899999999986654
No 23
>PTZ00184 calmodulin; Provisional
Probab=98.89 E-value=2.2e-09 Score=109.45 Aligned_cols=92 Identities=16% Similarity=0.307 Sum_probs=83.2
Q ss_pred ccceeeeeeccCCCcccccccHHHHHHHh-------HHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHH
Q psy13030 1097 MCKSLIMLRDTNISGRLNLLDIPLLMHML-------QFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVL 1169 (1218)
Q Consensus 1097 icr~li~~~D~d~~G~i~f~eF~~l~~~~-------~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~ 1169 (1218)
.++.++..+|.+++|.|+|+||+.++... ..++.+|+.||.|++|+|+..|++.+|+.+|..++.+++..|+.
T Consensus 48 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 127 (149)
T PTZ00184 48 ELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIR 127 (149)
T ss_pred HHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 56778888999999999999999987632 46789999999999999999999999999999999999999999
Q ss_pred HhC--CCCCcCHHHHHHHHHH
Q psy13030 1170 RFT--KNKVLTWENFIMAMVR 1188 (1218)
Q Consensus 1170 ~~d--~dG~i~f~eFv~~~~~ 1188 (1218)
.+| ++|.|+|+||+.++++
T Consensus 128 ~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 128 EADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred hcCCCCCCcCcHHHHHHHHhc
Confidence 999 6899999999987653
No 24
>KOG0031|consensus
Probab=98.88 E-value=6.1e-09 Score=102.62 Aligned_cols=89 Identities=18% Similarity=0.297 Sum_probs=77.4
Q ss_pred HhHHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhcCCCchhhhHh
Q psy13030 1124 MLQFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFTKNKVLTWENFIMAMVRLHLAHGHPNDYLFLT 1203 (1218)
Q Consensus 1124 ~~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d~dG~i~f~eFv~~~~~l~~~~~~~~~~~~~~ 1203 (1218)
.|++++|||...|.|++|.|+.++|+..|..||...++++|+.|+.+. .|.|+|.-|+.++-... ...+|++.+
T Consensus 30 QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea--~gPINft~FLTmfGekL-~gtdpe~~I--- 103 (171)
T KOG0031|consen 30 QIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA--PGPINFTVFLTMFGEKL-NGTDPEEVI--- 103 (171)
T ss_pred HHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC--CCCeeHHHHHHHHHHHh-cCCCHHHHH---
Confidence 589999999999999999999999999999999999999999999986 58999999999665432 346777777
Q ss_pred hhccccccCCCCCcC
Q psy13030 1204 LFMFKKTDVDQIGEV 1218 (1218)
Q Consensus 1204 ~~~F~~~D~d~~G~I 1218 (1218)
+.||+.||++++|.|
T Consensus 104 ~~AF~~FD~~~~G~I 118 (171)
T KOG0031|consen 104 LNAFKTFDDEGSGKI 118 (171)
T ss_pred HHHHHhcCccCCCcc
Confidence 666777799999987
No 25
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.85 E-value=9.6e-09 Score=95.58 Aligned_cols=68 Identities=9% Similarity=0.194 Sum_probs=62.1
Q ss_pred HhHHHHHHHHhcc-CCCCC-cCCHhhHHHHHHh-----cCCCCCHHHHHHHHHHhC--CCCCcCHHHHHHHHHHHHH
Q psy13030 1124 MLQFWRIAFQKFE-KGARS-RLSSYSLRPLLWE-----AGSTVSNKVLECLVLRFT--KNKVLTWENFIMAMVRLHL 1191 (1218)
Q Consensus 1124 ~~~~~~~~F~~fD-~d~~G-~I~~~EL~~aL~~-----lG~~ls~~ei~~li~~~d--~dG~i~f~eFv~~~~~l~~ 1191 (1218)
.+..++++|+.|| +||+| +|+..||+.+|++ +|...+++++++|++.+| +||.|+|++|+.++..+..
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~ 82 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTT 82 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 4678899999998 89999 6999999999999 999999999999999999 6899999999998776654
No 26
>PTZ00183 centrin; Provisional
Probab=98.72 E-value=3.9e-08 Score=101.63 Aligned_cols=114 Identities=16% Similarity=0.172 Sum_probs=64.1
Q ss_pred eeeeeeccCCCcccccccHHHHHHHh------HHHHHHHHhccCCCCCcCCHhhHHHHHHhc-CCCCCHHHHHHHHHHhC
Q psy13030 1100 SLIMLRDTNISGRLNLLDIPLLMHML------QFWRIAFQKFEKGARSRLSSYSLRPLLWEA-GSTVSNKVLECLVLRFT 1172 (1218)
Q Consensus 1100 ~li~~~D~d~~G~i~f~eF~~l~~~~------~~~~~~F~~fD~d~~G~I~~~EL~~aL~~l-G~~ls~~ei~~li~~~d 1172 (1218)
.+...+|.+++|.|++.||..++..+ ..+..+|+.+|.+++|.|+..|+..++... ......+++..+++.+|
T Consensus 21 ~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D 100 (158)
T PTZ00183 21 EAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFD 100 (158)
T ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhC
Confidence 33445566666666666666655532 235566666666666666666666665542 34445566666666666
Q ss_pred --CCCCcCHHHHHHHHHHHHHhcCCCchhhhHhhhccccccCCCCCcC
Q psy13030 1173 --KNKVLTWENFIMAMVRLHLAHGHPNDYLFLTLFMFKKTDVDQIGEV 1218 (1218)
Q Consensus 1173 --~dG~i~f~eFv~~~~~l~~~~~~~~~~~~~~~~~F~~~D~d~~G~I 1218 (1218)
++|.|+.+||...+..+.. .-..+++ ..+|..+|.|++|.|
T Consensus 101 ~~~~G~i~~~e~~~~l~~~~~--~l~~~~~---~~~~~~~d~~~~g~i 143 (158)
T PTZ00183 101 DDKTGKISLKNLKRVAKELGE--TITDEEL---QEMIDEADRNGDGEI 143 (158)
T ss_pred CCCCCcCcHHHHHHHHHHhCC--CCCHHHH---HHHHHHhCCCCCCcC
Confidence 4566666666665543321 1122222 444555566666654
No 27
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.70 E-value=2.3e-08 Score=87.82 Aligned_cols=60 Identities=23% Similarity=0.376 Sum_probs=52.6
Q ss_pred HHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHH----HHHhC--CCCCcCHHHHHHHH
Q psy13030 1127 FWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECL----VLRFT--KNKVLTWENFIMAM 1186 (1218)
Q Consensus 1127 ~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~l----i~~~d--~dG~i~f~eFv~~~ 1186 (1218)
+++++|+.||+|++|+|+..||+.+++.+|...+.+++..+ ++.+| +||.|+|+||+++|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 46899999999999999999999999999987766555555 99999 79999999999864
No 28
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.68 E-value=5.4e-08 Score=91.96 Aligned_cols=69 Identities=13% Similarity=0.331 Sum_probs=60.9
Q ss_pred HHhHHHHHHHHhccC-CC-CCcCCHhhHHHHHHh-----cCCCCCHHHHHHHHHHhC--CCCCcCHHHHHHHHHHHHH
Q psy13030 1123 HMLQFWRIAFQKFEK-GA-RSRLSSYSLRPLLWE-----AGSTVSNKVLECLVLRFT--KNKVLTWENFIMAMVRLHL 1191 (1218)
Q Consensus 1123 ~~~~~~~~~F~~fD~-d~-~G~I~~~EL~~aL~~-----lG~~ls~~ei~~li~~~d--~dG~i~f~eFv~~~~~l~~ 1191 (1218)
..+..++++|+.||. |+ +|+|+..||+.+|+. +|..++.++++.|+..+| +||.|+|++|+.++..+..
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 446788999999997 98 799999999999997 678999999999999999 6899999999997776543
No 29
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.67 E-value=6.9e-08 Score=90.87 Aligned_cols=68 Identities=13% Similarity=0.262 Sum_probs=59.6
Q ss_pred HhHHHHHHHHhcc-CCCCC-cCCHhhHHHHHHh-cCC----CCCHHHHHHHHHHhC--CCCCcCHHHHHHHHHHHHH
Q psy13030 1124 MLQFWRIAFQKFE-KGARS-RLSSYSLRPLLWE-AGS----TVSNKVLECLVLRFT--KNKVLTWENFIMAMVRLHL 1191 (1218)
Q Consensus 1124 ~~~~~~~~F~~fD-~d~~G-~I~~~EL~~aL~~-lG~----~ls~~ei~~li~~~d--~dG~i~f~eFv~~~~~l~~ 1191 (1218)
.+..++++|+.|| +|++| +|+..||+.+|+. +|. .++.++++.|++.+| ++|.|+|++|+.++..+..
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~ 83 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTV 83 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHH
Confidence 3578899999997 99999 5999999999986 554 568999999999999 6899999999998877664
No 30
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.67 E-value=8.6e-08 Score=89.20 Aligned_cols=69 Identities=17% Similarity=0.343 Sum_probs=61.7
Q ss_pred HhHHHHHHHHhccC-CC-CCcCCHhhHHHHHH---hcCCCCCHHHHHHHHHHhC--CCCCcCHHHHHHHHHHHHHh
Q psy13030 1124 MLQFWRIAFQKFEK-GA-RSRLSSYSLRPLLW---EAGSTVSNKVLECLVLRFT--KNKVLTWENFIMAMVRLHLA 1192 (1218)
Q Consensus 1124 ~~~~~~~~F~~fD~-d~-~G~I~~~EL~~aL~---~lG~~ls~~ei~~li~~~d--~dG~i~f~eFv~~~~~l~~~ 1192 (1218)
.+..+.++|..||. || +|+|+.+||+++|+ .+|.+++++++++|++.+| +||.|+|+||+.+|.++..+
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~~ 83 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALALI 83 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 35677899999998 78 89999999999997 4799999999999999999 78999999999988887653
No 31
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.66 E-value=7.6e-08 Score=90.70 Aligned_cols=69 Identities=17% Similarity=0.310 Sum_probs=59.9
Q ss_pred HhHHHHHHHHhcc-CCCCC-cCCHhhHHHHHHh-c----CCCCCHHHHHHHHHHhC--CCCCcCHHHHHHHHHHHHHh
Q psy13030 1124 MLQFWRIAFQKFE-KGARS-RLSSYSLRPLLWE-A----GSTVSNKVLECLVLRFT--KNKVLTWENFIMAMVRLHLA 1192 (1218)
Q Consensus 1124 ~~~~~~~~F~~fD-~d~~G-~I~~~EL~~aL~~-l----G~~ls~~ei~~li~~~d--~dG~i~f~eFv~~~~~l~~~ 1192 (1218)
.+..++++|..|| +||+| +|+..||+.+|+. + +...++.+++.|++++| +||.|+|+||+.+|..+..+
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~~ 85 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTVA 85 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHH
Confidence 4678899999998 89998 5999999999977 3 44568889999999999 78999999999988887653
No 32
>PTZ00184 calmodulin; Provisional
Probab=98.64 E-value=7.7e-08 Score=98.11 Aligned_cols=61 Identities=16% Similarity=0.338 Sum_probs=34.2
Q ss_pred HHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC--CCCCcCHHHHHHHH
Q psy13030 1126 QFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT--KNKVLTWENFIMAM 1186 (1218)
Q Consensus 1126 ~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d--~dG~i~f~eFv~~~ 1186 (1218)
+.++++|+.+|.|++|.|+..||+.+|..+|.+++.+++..|+..+| ++|.|+|++|+.++
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 73 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLM 73 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555 34555555555543
No 33
>KOG0030|consensus
Probab=98.63 E-value=8.8e-08 Score=93.12 Aligned_cols=91 Identities=16% Similarity=0.258 Sum_probs=75.3
Q ss_pred hHHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhCCC----CCcCHHHHHHHHHHHHHh-cCCCchh
Q psy13030 1125 LQFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFTKN----KVLTWENFIMAMVRLHLA-HGHPNDY 1199 (1218)
Q Consensus 1125 ~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d~d----G~i~f~eFv~~~~~l~~~-~~~~~~~ 1199 (1218)
..++++||..||+.++|+|+...+..+|++||.++|+.++...+.+++.+ -.|+|++|+-++..+... .....++
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~ed 89 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYED 89 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHH
Confidence 46889999999999999999999999999999999999999999999944 569999999988776542 2233445
Q ss_pred hhHhhhccccccCCCCCcC
Q psy13030 1200 LFLTLFMFKKTDVDQIGEV 1218 (1218)
Q Consensus 1200 ~~~~~~~F~~~D~d~~G~I 1218 (1218)
.-+.+++| |++++|.|
T Consensus 90 fvegLrvF---Dkeg~G~i 105 (152)
T KOG0030|consen 90 FVEGLRVF---DKEGNGTI 105 (152)
T ss_pred HHHHHHhh---cccCCcce
Confidence 43445555 99999987
No 34
>PLN02964 phosphatidylserine decarboxylase
Probab=98.53 E-value=1.5e-07 Score=115.83 Aligned_cols=86 Identities=9% Similarity=0.107 Sum_probs=73.0
Q ss_pred HhHHHHHHHHhccCCCCCcCCHhhHHHHHHhcC-CCCCHHH---HHHHHHHhC--CCCCcCHHHHHHHHHHHHHhcCCCc
Q psy13030 1124 MLQFWRIAFQKFEKGARSRLSSYSLRPLLWEAG-STVSNKV---LECLVLRFT--KNKVLTWENFIMAMVRLHLAHGHPN 1197 (1218)
Q Consensus 1124 ~~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG-~~ls~~e---i~~li~~~d--~dG~i~f~eFv~~~~~l~~~~~~~~ 1197 (1218)
.+++++++|..||+|++|+| |+.+|+++| +..++++ ++.|+..+| +||.|+|+||+.+|..+. ...++
T Consensus 141 qi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg--~~~se 214 (644)
T PLN02964 141 EPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFG--NLVAA 214 (644)
T ss_pred HHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc--cCCCH
Confidence 46889999999999999997 999999999 5999988 899999999 789999999999887653 23455
Q ss_pred hhhhHhhhccccccCCCCCcC
Q psy13030 1198 DYLFLTLFMFKKTDVDQIGEV 1218 (1218)
Q Consensus 1198 ~~~~~~~~~F~~~D~d~~G~I 1218 (1218)
+++ .++|+.||+|++|+|
T Consensus 215 EEL---~eaFk~fDkDgdG~I 232 (644)
T PLN02964 215 NKK---EELFKAADLNGDGVV 232 (644)
T ss_pred HHH---HHHHHHhCCCCCCcC
Confidence 555 666777799999987
No 35
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.53 E-value=2.9e-07 Score=87.36 Aligned_cols=66 Identities=15% Similarity=0.246 Sum_probs=59.1
Q ss_pred HhHHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC--CCCCcCHHHHHHHHHHHHH
Q psy13030 1124 MLQFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT--KNKVLTWENFIMAMVRLHL 1191 (1218)
Q Consensus 1124 ~~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d--~dG~i~f~eFv~~~~~l~~ 1191 (1218)
.+..++++|+.||+|++|.|+..||+.+|+.+| ++.++++.|+..+| ++|.|+|+||+.++..+..
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYR 75 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHH
Confidence 467889999999999999999999999999987 68999999999999 6899999999997765443
No 36
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.52 E-value=2.4e-07 Score=81.22 Aligned_cols=61 Identities=23% Similarity=0.293 Sum_probs=54.9
Q ss_pred HHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC--CCCCcCHHHHHHHHHHHH
Q psy13030 1128 WRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT--KNKVLTWENFIMAMVRLH 1190 (1218)
Q Consensus 1128 ~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d--~dG~i~f~eFv~~~~~l~ 1190 (1218)
++++|+.+|+|++|.|+.+||+.+|+.+|. ++++++.|+..+| ++|.|+|+||+.++....
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 367999999999999999999999999985 8999999999999 689999999999766543
No 37
>KOG0031|consensus
Probab=98.51 E-value=3.1e-07 Score=90.80 Aligned_cols=81 Identities=15% Similarity=0.251 Sum_probs=73.6
Q ss_pred cCCCcccccccHHHHHHH-------hHHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC--CCCCc
Q psy13030 1107 TNISGRLNLLDIPLLMHM-------LQFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT--KNKVL 1177 (1218)
Q Consensus 1107 ~d~~G~i~f~eF~~l~~~-------~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d--~dG~i 1177 (1218)
...+|.|||.-|+.|+.. .+.+..||+.||.+++|+|..+.||.+|...|.+++++|++.|++.+- ..|.|
T Consensus 75 ~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~ 154 (171)
T KOG0031|consen 75 KEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNF 154 (171)
T ss_pred HhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCce
Confidence 457899999999999963 357889999999999999999999999999999999999999999998 47999
Q ss_pred CHHHHHHHHH
Q psy13030 1178 TWENFIMAMV 1187 (1218)
Q Consensus 1178 ~f~eFv~~~~ 1187 (1218)
+|.+|+.++.
T Consensus 155 dy~~~~~~it 164 (171)
T KOG0031|consen 155 DYKAFTYIIT 164 (171)
T ss_pred eHHHHHHHHH
Confidence 9999998655
No 38
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.48 E-value=3.7e-07 Score=85.11 Aligned_cols=67 Identities=16% Similarity=0.315 Sum_probs=59.1
Q ss_pred HhHHHHHHHHhccC--CCCCcCCHhhHHHHHHh-cCCCC----CHHHHHHHHHHhC--CCCCcCHHHHHHHHHHHH
Q psy13030 1124 MLQFWRIAFQKFEK--GARSRLSSYSLRPLLWE-AGSTV----SNKVLECLVLRFT--KNKVLTWENFIMAMVRLH 1190 (1218)
Q Consensus 1124 ~~~~~~~~F~~fD~--d~~G~I~~~EL~~aL~~-lG~~l----s~~ei~~li~~~d--~dG~i~f~eFv~~~~~l~ 1190 (1218)
.++.++++|..||+ |++|.|+..||+.+|+. +|..+ +.++++.|+..+| ++|.|+|++|+.++..+.
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 46788999999999 89999999999999986 67555 5999999999999 689999999999877653
No 39
>KOG0034|consensus
Probab=98.39 E-value=4.4e-07 Score=95.81 Aligned_cols=89 Identities=16% Similarity=0.263 Sum_probs=72.7
Q ss_pred eeeeeccCCCcc-cccccHHHHHHH-------hHHHHHHHHhccCCCCCcCCHhhHHHHHHhc-CCCCC--HH----HHH
Q psy13030 1101 LIMLRDTNISGR-LNLLDIPLLMHM-------LQFWRIAFQKFEKGARSRLSSYSLRPLLWEA-GSTVS--NK----VLE 1165 (1218)
Q Consensus 1101 li~~~D~d~~G~-i~f~eF~~l~~~-------~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~l-G~~ls--~~----ei~ 1165 (1218)
++..++++++|. |+|.+|+.+... .++++=||++||.+++|+|+.+||..+|..+ |...+ ++ .++
T Consensus 71 I~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d 150 (187)
T KOG0034|consen 71 IIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVD 150 (187)
T ss_pred HHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 566778888887 999999998863 2367779999999999999999999999987 55566 44 446
Q ss_pred HHHHHhC--CCCCcCHHHHHHHHHHH
Q psy13030 1166 CLVLRFT--KNKVLTWENFIMAMVRL 1189 (1218)
Q Consensus 1166 ~li~~~d--~dG~i~f~eFv~~~~~l 1189 (1218)
.++.++| +||.|+|+||.+.+.+.
T Consensus 151 ~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 151 KTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 6778888 79999999998866553
No 40
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.39 E-value=1.1e-06 Score=81.93 Aligned_cols=68 Identities=18% Similarity=0.251 Sum_probs=60.1
Q ss_pred HhHHHHHHHHh-ccCCCCC-cCCHhhHHHHHHhc-----CCCCCHHHHHHHHHHhC--CCCCcCHHHHHHHHHHHHH
Q psy13030 1124 MLQFWRIAFQK-FEKGARS-RLSSYSLRPLLWEA-----GSTVSNKVLECLVLRFT--KNKVLTWENFIMAMVRLHL 1191 (1218)
Q Consensus 1124 ~~~~~~~~F~~-fD~d~~G-~I~~~EL~~aL~~l-----G~~ls~~ei~~li~~~d--~dG~i~f~eFv~~~~~l~~ 1191 (1218)
.+..+..+|+. +|+||+| +|+..||+.+|..- +...++.+++.|++.+| +||.|+|+||+++|..+..
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~ 83 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAV 83 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 46788999999 7899986 99999999999875 55778899999999999 7899999999998888754
No 41
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.30 E-value=1e-06 Score=74.06 Aligned_cols=50 Identities=20% Similarity=0.380 Sum_probs=46.7
Q ss_pred CCCcCCHhhHHHHHHhcCCC-CCHHHHHHHHHHhC--CCCCcCHHHHHHHHHH
Q psy13030 1139 ARSRLSSYSLRPLLWEAGST-VSNKVLECLVLRFT--KNKVLTWENFIMAMVR 1188 (1218)
Q Consensus 1139 ~~G~I~~~EL~~aL~~lG~~-ls~~ei~~li~~~d--~dG~i~f~eFv~~~~~ 1188 (1218)
++|.|+.+||+.+|+.+|.+ +++++++.|+..+| +||.|+|+||+.++.+
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999999999 99999999999999 7999999999997654
No 42
>KOG0036|consensus
Probab=98.24 E-value=1.6e-06 Score=98.24 Aligned_cols=86 Identities=13% Similarity=0.146 Sum_probs=77.7
Q ss_pred eeeeeeccCCCcccccccHHHHHH-HhHHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC--CCCC
Q psy13030 1100 SLIMLRDTNISGRLNLLDIPLLMH-MLQFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT--KNKV 1176 (1218)
Q Consensus 1100 ~li~~~D~d~~G~i~f~eF~~l~~-~~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d--~dG~ 1176 (1218)
.++..+|.|.+|+++|.||...+. ...++.++|+..|.++||.|+.+|+.+.|+++|.++++++++.++..+| ++++
T Consensus 55 ~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~ 134 (463)
T KOG0036|consen 55 MLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKAT 134 (463)
T ss_pred HHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCee
Confidence 356778999999999999998775 4567889999999999999999999999999999999999999999999 5677
Q ss_pred cCHHHHHHH
Q psy13030 1177 LTWENFIMA 1185 (1218)
Q Consensus 1177 i~f~eFv~~ 1185 (1218)
|+++||-.-
T Consensus 135 I~~~e~rd~ 143 (463)
T KOG0036|consen 135 IDLEEWRDH 143 (463)
T ss_pred eccHHHHhh
Confidence 999999773
No 43
>KOG0044|consensus
Probab=98.21 E-value=3.8e-06 Score=88.82 Aligned_cols=112 Identities=15% Similarity=0.173 Sum_probs=86.4
Q ss_pred cCCCcccccccHHHHHHHh-------HHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC--CCCCc
Q psy13030 1107 TNISGRLNLLDIPLLMHML-------QFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT--KNKVL 1177 (1218)
Q Consensus 1107 ~d~~G~i~f~eF~~l~~~~-------~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d--~dG~i 1177 (1218)
.-.+|.++..+|..++..+ .....+|+.||+|++|+|+..|+-.+|.-+=-.-.++-+.-.++.|| +||.|
T Consensus 38 ~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~I 117 (193)
T KOG0044|consen 38 ECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYI 117 (193)
T ss_pred cCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceE
Confidence 3458999999999999853 34568999999999999999999888887644445666778899999 79999
Q ss_pred CHHHHHHHHHHHHHhcCC------CchhhhHhhhccccccCCCCCcC
Q psy13030 1178 TWENFIMAMVRLHLAHGH------PNDYLFLTLFMFKKTDVDQIGEV 1218 (1218)
Q Consensus 1178 ~f~eFv~~~~~l~~~~~~------~~~~~~~~~~~F~~~D~d~~G~I 1218 (1218)
+.+|++.++.....+... +...-..+.++|+++|.|++|.|
T Consensus 118 t~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~l 164 (193)
T KOG0044|consen 118 TKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKL 164 (193)
T ss_pred cHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcc
Confidence 999999977654432221 11122345688999999999976
No 44
>PF14658 EF-hand_9: EF-hand domain
Probab=98.14 E-value=4.1e-06 Score=72.31 Aligned_cols=58 Identities=17% Similarity=0.326 Sum_probs=53.6
Q ss_pred HHHHhccCCCCCcCCHhhHHHHHHhcCC-CCCHHHHHHHHHHhC---CCCCcCHHHHHHHHH
Q psy13030 1130 IAFQKFEKGARSRLSSYSLRPLLWEAGS-TVSNKVLECLVLRFT---KNKVLTWENFIMAMV 1187 (1218)
Q Consensus 1130 ~~F~~fD~d~~G~I~~~EL~~aL~~lG~-~ls~~ei~~li~~~d---~dG~i~f~eFv~~~~ 1187 (1218)
.+|..||.++.|.|...+|...|+++|. ..++.+++.|.+++| .||.|+|++|...|.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 3799999999999999999999999998 999999999999999 358899999988654
No 45
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.12 E-value=7.7e-06 Score=69.35 Aligned_cols=59 Identities=22% Similarity=0.391 Sum_probs=55.1
Q ss_pred HHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC--CCCCcCHHHHHHHH
Q psy13030 1128 WRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT--KNKVLTWENFIMAM 1186 (1218)
Q Consensus 1128 ~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d--~dG~i~f~eFv~~~ 1186 (1218)
++.+|+.+|.|++|.|+..|++.+|+.+|...+.+++..++..+| ++|.|+|++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 567899999999999999999999999999999999999999999 68999999998754
No 46
>KOG0044|consensus
Probab=98.12 E-value=2.9e-06 Score=89.76 Aligned_cols=94 Identities=15% Similarity=0.243 Sum_probs=75.7
Q ss_pred ccceeeeeeccCCCcccccccHHHHHHHh------HHHHHHHHhccCCCCCcCCHhhHHHHHHhc----CC-------CC
Q psy13030 1097 MCKSLIMLRDTNISGRLNLLDIPLLMHML------QFWRIAFQKFEKGARSRLSSYSLRPLLWEA----GS-------TV 1159 (1218)
Q Consensus 1097 icr~li~~~D~d~~G~i~f~eF~~l~~~~------~~~~~~F~~fD~d~~G~I~~~EL~~aL~~l----G~-------~l 1159 (1218)
.++.+...+|++++|.|+|.||+..+..+ +.++=+|++||.||+|+|+..|+-++++++ |. .-
T Consensus 65 y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~ 144 (193)
T KOG0044|consen 65 YAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEET 144 (193)
T ss_pred HHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCccccc
Confidence 45566788999999999999999888642 344556999999999999999999987764 42 22
Q ss_pred CHHHHHHHHHHhC--CCCCcCHHHHHHHHHHHH
Q psy13030 1160 SNKVLECLVLRFT--KNKVLTWENFIMAMVRLH 1190 (1218)
Q Consensus 1160 s~~ei~~li~~~d--~dG~i~f~eFv~~~~~l~ 1190 (1218)
..+-++.+++.+| +||.|+++||+..+.+..
T Consensus 145 ~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~ 177 (193)
T KOG0044|consen 145 PEERVDKIFSKMDKNKDGKLTLEEFIEGCKADP 177 (193)
T ss_pred HHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCH
Confidence 3566789999999 799999999999766533
No 47
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.07 E-value=1.1e-05 Score=75.31 Aligned_cols=68 Identities=12% Similarity=0.278 Sum_probs=58.7
Q ss_pred HhHHHHHHHHhccCC--CCCcCCHhhHHHHHH-hcCCCCC----HHHHHHHHHHhC--CCCCcCHHHHHHHHHHHHH
Q psy13030 1124 MLQFWRIAFQKFEKG--ARSRLSSYSLRPLLW-EAGSTVS----NKVLECLVLRFT--KNKVLTWENFIMAMVRLHL 1191 (1218)
Q Consensus 1124 ~~~~~~~~F~~fD~d--~~G~I~~~EL~~aL~-~lG~~ls----~~ei~~li~~~d--~dG~i~f~eFv~~~~~l~~ 1191 (1218)
.+..+..+|..|+.. ++|+|+.+||+.+|. .+|..++ +++++.|+..+| +||.|+|++|+.++..+..
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~ 82 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGV 82 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 356778899999855 589999999999997 7788787 999999999999 6899999999998877643
No 48
>KOG0038|consensus
Probab=97.89 E-value=1.4e-05 Score=78.15 Aligned_cols=85 Identities=14% Similarity=0.196 Sum_probs=69.7
Q ss_pred eeccCCCcccccccHHHHHHHhHH-------HHHHHHhccCCCCCcCCHhhHHHHHHhcC-CCCCHHHHH----HHHHHh
Q psy13030 1104 LRDTNISGRLNLLDIPLLMHMLQF-------WRIAFQKFEKGARSRLSSYSLRPLLWEAG-STVSNKVLE----CLVLRF 1171 (1218)
Q Consensus 1104 ~~D~d~~G~i~f~eF~~l~~~~~~-------~~~~F~~fD~d~~G~I~~~EL~~aL~~lG-~~ls~~ei~----~li~~~ 1171 (1218)
.+-.||.|.++|++|+.++....+ ..=||+.||-|++++|...+|...|+.|- ..|+++|++ .+|.+.
T Consensus 79 ~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEA 158 (189)
T KOG0038|consen 79 VFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEA 158 (189)
T ss_pred HhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHh
Confidence 455799999999999999874322 23589999999999999999999999883 678988875 456677
Q ss_pred C--CCCCcCHHHHHHHHHH
Q psy13030 1172 T--KNKVLTWENFIMAMVR 1188 (1218)
Q Consensus 1172 d--~dG~i~f~eFv~~~~~ 1188 (1218)
| +||+|+|.||-.++.+
T Consensus 159 D~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 159 DLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred cCCCCCcccHHHHHHHHHh
Confidence 7 7999999999886655
No 49
>PLN02964 phosphatidylserine decarboxylase
Probab=97.64 E-value=5.4e-05 Score=93.70 Aligned_cols=86 Identities=16% Similarity=0.128 Sum_probs=72.3
Q ss_pred ceeeeeeccCCCcccccccHHHHHHHh-------H---HHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHH
Q psy13030 1099 KSLIMLRDTNISGRLNLLDIPLLMHML-------Q---FWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLV 1168 (1218)
Q Consensus 1099 r~li~~~D~d~~G~i~f~eF~~l~~~~-------~---~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li 1168 (1218)
+....++|.|++|.+ ...++..+ . .++++|+.+|.|++|.|+.+|+..+|..+|...+++++..++
T Consensus 146 keaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaF 221 (644)
T PLN02964 146 CESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELF 221 (644)
T ss_pred HHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHH
Confidence 334568899999986 33333322 2 278999999999999999999999999999989999999999
Q ss_pred HHhC--CCCCcCHHHHHHHHHH
Q psy13030 1169 LRFT--KNKVLTWENFIMAMVR 1188 (1218)
Q Consensus 1169 ~~~d--~dG~i~f~eFv~~~~~ 1188 (1218)
+.+| +||.|+++||++++..
T Consensus 222 k~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 222 KAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHhCCCCCCcCCHHHHHHHHHh
Confidence 9999 7899999999997766
No 50
>KOG0041|consensus
Probab=97.64 E-value=0.00018 Score=74.45 Aligned_cols=64 Identities=9% Similarity=0.241 Sum_probs=58.6
Q ss_pred HhHHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC--CCCCcCHHHHHHHHH
Q psy13030 1124 MLQFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT--KNKVLTWENFIMAMV 1187 (1218)
Q Consensus 1124 ~~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d--~dG~i~f~eFv~~~~ 1187 (1218)
.|+.+..+|+.+|.|.||+|+..||+..|..||.+-|---+..||.++| .||+|+|-||+-+..
T Consensus 97 qIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfr 162 (244)
T KOG0041|consen 97 QIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFR 162 (244)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 4788889999999999999999999999999999999989999999999 689999999966433
No 51
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.62 E-value=0.00015 Score=71.11 Aligned_cols=59 Identities=10% Similarity=0.199 Sum_probs=51.1
Q ss_pred hHHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC--CCCCcCHHHHHHHHH
Q psy13030 1125 LQFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT--KNKVLTWENFIMAMV 1187 (1218)
Q Consensus 1125 ~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d--~dG~i~f~eFv~~~~ 1187 (1218)
...+.-+|..+|+|++|.|+.+||..++ + ...+..+..++..+| +||.|+++||..++.
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--L--DPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--c--cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 4567789999999999999999999887 3 345778899999999 799999999999773
No 52
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.56 E-value=5.7e-05 Score=54.92 Aligned_cols=29 Identities=14% Similarity=0.325 Sum_probs=26.2
Q ss_pred HHHHHHHhccCCCCCcCCHhhHHHHHHhc
Q psy13030 1127 FWRIAFQKFEKGARSRLSSYSLRPLLWEA 1155 (1218)
Q Consensus 1127 ~~~~~F~~fD~d~~G~I~~~EL~~aL~~l 1155 (1218)
+++++|+.||+|+||+|+.+|++.+|++|
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 46889999999999999999999999875
No 53
>KOG0036|consensus
Probab=97.55 E-value=0.00023 Score=81.18 Aligned_cols=84 Identities=12% Similarity=0.149 Sum_probs=68.5
Q ss_pred hHHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCC-CCHHHHHHHHHHhC--CCCCcCHHHHHHHHHHHHHhcCCCchhhh
Q psy13030 1125 LQFWRIAFQKFEKGARSRLSSYSLRPLLWEAGST-VSNKVLECLVLRFT--KNKVLTWENFIMAMVRLHLAHGHPNDYLF 1201 (1218)
Q Consensus 1125 ~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~-ls~~ei~~li~~~d--~dG~i~f~eFv~~~~~l~~~~~~~~~~~~ 1201 (1218)
..+++..|+.||.+++|.++..+|.+.|..++.. ...+-+..+++..| .||.+||.||.+-+..-+.
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~---------- 82 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKEL---------- 82 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHH----------
Confidence 3568899999999999999999999999999866 77888889999999 6899999999884332221
Q ss_pred HhhhccccccCCCCCcC
Q psy13030 1202 LTLFMFKKTDVDQIGEV 1218 (1218)
Q Consensus 1202 ~~~~~F~~~D~d~~G~I 1218 (1218)
+...+|...|.+++|.|
T Consensus 83 ~l~~~F~~iD~~hdG~i 99 (463)
T KOG0036|consen 83 ELYRIFQSIDLEHDGKI 99 (463)
T ss_pred HHHHHHhhhccccCCcc
Confidence 22677888888888876
No 54
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.55 E-value=5.8e-05 Score=55.84 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=27.1
Q ss_pred HHHHHHHhccCCCCCcCCHhhHHHHHH-hcC
Q psy13030 1127 FWRIAFQKFEKGARSRLSSYSLRPLLW-EAG 1156 (1218)
Q Consensus 1127 ~~~~~F~~fD~d~~G~I~~~EL~~aL~-~lG 1156 (1218)
+++++|+.||+|++|+|+.+||+.+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478999999999999999999999999 687
No 55
>KOG0034|consensus
Probab=97.40 E-value=0.00051 Score=72.83 Aligned_cols=115 Identities=13% Similarity=0.135 Sum_probs=87.6
Q ss_pred eeccC-CCcccccccHHHHHHHh-H-HHHHHHHhccCCCCCc-CCHhhHHHHHHhcCCCCCHH-HHHHHHHHhC--CCCC
Q psy13030 1104 LRDTN-ISGRLNLLDIPLLMHML-Q-FWRIAFQKFEKGARSR-LSSYSLRPLLWEAGSTVSNK-VLECLVLRFT--KNKV 1176 (1218)
Q Consensus 1104 ~~D~d-~~G~i~f~eF~~l~~~~-~-~~~~~F~~fD~d~~G~-I~~~EL~~aL~~lG~~ls~~-ei~~li~~~d--~dG~ 1176 (1218)
.+|.+ +.|.++.+||..+.... + -...+++.||.+++|. |+..|+-++|...=.+-+.+ -+.-.++-|| ++|.
T Consensus 41 kl~~~~~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~ 120 (187)
T KOG0034|consen 41 KLDRNNGDGYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGF 120 (187)
T ss_pred HhccccccCccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCc
Confidence 34555 88999999999987422 1 2357999999999999 99999999998875555555 7888999999 7899
Q ss_pred cCHHHHHHHHHHHHHhcCCC-chhhh-HhhhccccccCCCCCcC
Q psy13030 1177 LTWENFIMAMVRLHLAHGHP-NDYLF-LTLFMFKKTDVDQIGEV 1218 (1218)
Q Consensus 1177 i~f~eFv~~~~~l~~~~~~~-~~~~~-~~~~~F~~~D~d~~G~I 1218 (1218)
|+.+|+..++..+-...... ++.+. .+-..|..+|.|++|.|
T Consensus 121 I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~I 164 (187)
T KOG0034|consen 121 ISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKI 164 (187)
T ss_pred CcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcC
Confidence 99999999777655421221 23322 44677999999999987
No 56
>KOG4223|consensus
Probab=97.36 E-value=0.00022 Score=79.58 Aligned_cols=116 Identities=15% Similarity=0.125 Sum_probs=80.4
Q ss_pred eeeeeccCCCcccccccHHHHHH--------------------HhHHHHHHHHhccCCCCCcCCHhhHHHHHHhc-CCCC
Q psy13030 1101 LIMLRDTNISGRLNLLDIPLLMH--------------------MLQFWRIAFQKFEKGARSRLSSYSLRPLLWEA-GSTV 1159 (1218)
Q Consensus 1101 li~~~D~d~~G~i~f~eF~~l~~--------------------~~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~l-G~~l 1159 (1218)
-+..+|.+.+|.|+|+|++..+. ++...++-|+.-|.|++|.++..|+...|-=- -..+
T Consensus 118 ~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M 197 (325)
T KOG4223|consen 118 RWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHM 197 (325)
T ss_pred HHHHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchH
Confidence 34456666777777777665432 13456788999999999999999999988522 2355
Q ss_pred CHHHHHHHHHHhC--CCCCcCHHHHHHHHHHHHHhcCCCchhh--hHhhhccccccCCCCCcC
Q psy13030 1160 SNKVLECLVLRFT--KNKVLTWENFIMAMVRLHLAHGHPNDYL--FLTLFMFKKTDVDQIGEV 1218 (1218)
Q Consensus 1160 s~~ei~~li~~~d--~dG~i~f~eFv~~~~~l~~~~~~~~~~~--~~~~~~F~~~D~d~~G~I 1218 (1218)
..-+|.+-+...| +||.|+++|||.-|-+-.....+|+-.+ .+.|..| +|+|++|+.
T Consensus 198 ~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~--~DknkDG~L 258 (325)
T KOG4223|consen 198 KDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEF--RDKNKDGKL 258 (325)
T ss_pred HHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHH--hhcCCCCcc
Confidence 6678888899999 7999999999997776543222332222 1223333 499999974
No 57
>KOG2643|consensus
Probab=97.36 E-value=0.00026 Score=81.31 Aligned_cols=106 Identities=21% Similarity=0.324 Sum_probs=69.5
Q ss_pred eeccCCCcccccccHHHHHHHh----HHHHHHHHhccCCCCCcCCHhhHHHHHHh------cC----------CCCCHHH
Q psy13030 1104 LRDTNISGRLNLLDIPLLMHML----QFWRIAFQKFEKGARSRLSSYSLRPLLWE------AG----------STVSNKV 1163 (1218)
Q Consensus 1104 ~~D~d~~G~i~f~eF~~l~~~~----~~~~~~F~~fD~d~~G~I~~~EL~~aL~~------lG----------~~ls~~e 1163 (1218)
.++.+.+|.|+|.|++-|++-+ ...+-||++||.|++|-|+.+|+..+.+- +| .....+.
T Consensus 207 F~~lg~~GLIsfSdYiFLlTlLS~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~ 286 (489)
T KOG2643|consen 207 FYKLGESGLISFSDYIFLLTLLSIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEV 286 (489)
T ss_pred EEEcCCCCeeeHHHHHHHHHHHccCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhh
Confidence 3566778889999988877643 45667899999999999999988887621 22 2222222
Q ss_pred HHHHHHHhC---CCCCcCHHHHHHHHHHHHHhcCCCchhhhHhhhccccccCCCCCcC
Q psy13030 1164 LECLVLRFT---KNKVLTWENFIMAMVRLHLAHGHPNDYLFLTLFMFKKTDVDQIGEV 1218 (1218)
Q Consensus 1164 i~~li~~~d---~dG~i~f~eFv~~~~~l~~~~~~~~~~~~~~~~~F~~~D~d~~G~I 1218 (1218)
-..|...+- +++++++++|.+.+-.|+.. .+ ..-|..+|+..+|.|
T Consensus 287 nsaL~~yFFG~rg~~kLs~deF~~F~e~Lq~E------il---~lEF~~~~~~~~g~I 335 (489)
T KOG2643|consen 287 NSALLTYFFGKRGNGKLSIDEFLKFQENLQEE------IL---ELEFERFDKGDSGAI 335 (489)
T ss_pred hhhHHHHhhccCCCccccHHHHHHHHHHHHHH------HH---HHHHHHhCccccccc
Confidence 233333333 56779999998877777641 11 223666688777766
No 58
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.19 E-value=0.0019 Score=59.98 Aligned_cols=66 Identities=12% Similarity=0.265 Sum_probs=55.1
Q ss_pred hHHHHHHHHhccCCCCCcCCHhhHHHHHHh-c----CCCCCHHHHHHHHHHhC--CCCCcCHHHHHHHHHHHHH
Q psy13030 1125 LQFWRIAFQKFEKGARSRLSSYSLRPLLWE-A----GSTVSNKVLECLVLRFT--KNKVLTWENFIMAMVRLHL 1191 (1218)
Q Consensus 1125 ~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~-l----G~~ls~~ei~~li~~~d--~dG~i~f~eFv~~~~~l~~ 1191 (1218)
+..+..+|..|-. +.++++..||+..|+. + +-.-+++.++.|+...| +||.|+|.||+.++..+..
T Consensus 7 i~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ 79 (91)
T cd05024 7 MEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLI 79 (91)
T ss_pred HHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 5567789999984 4579999999999963 3 45557899999999999 7999999999998888764
No 59
>KOG0751|consensus
Probab=97.04 E-value=0.00042 Score=80.01 Aligned_cols=126 Identities=12% Similarity=0.208 Sum_probs=93.0
Q ss_pred cccccchhhhccC--------CcccccceeeeeeccCCCcccccccHHHHHHH----hHHHHHHHHhccCCCCCcCCHhh
Q psy13030 1080 EFFLNFSAYLLEK--------PSLDMCKSLIMLRDTNISGRLNLLDIPLLMHM----LQFWRIAFQKFEKGARSRLSSYS 1147 (1218)
Q Consensus 1080 ~fwm~~~df~~~f--------~sl~icr~li~~~D~d~~G~i~f~eF~~l~~~----~~~~~~~F~~fD~d~~G~I~~~E 1147 (1218)
+..|+=+||++.+ .+-++.+.+....|..++|.|+|+||+.+=.. -.....||..||+.++|.++.++
T Consensus 50 e~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~pDal~~~aFqlFDr~~~~~vs~~~ 129 (694)
T KOG0751|consen 50 ESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAPDALFEVAFQLFDRLGNGEVSFED 129 (694)
T ss_pred ccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCchHHHHHHHHHhcccCCCceehHH
Confidence 4567778888755 33456676777778889999999999876432 24567899999999999999999
Q ss_pred HHHHHHhcC------CCCCHHHHHHHHHHhCC---CCCcCHHHHHHHHHHHHHhcCCCchhhhHhhhccccccCCCCCcC
Q psy13030 1148 LRPLLWEAG------STVSNKVLECLVLRFTK---NKVLTWENFIMAMVRLHLAHGHPNDYLFLTLFMFKKTDVDQIGEV 1218 (1218)
Q Consensus 1148 L~~aL~~lG------~~ls~~ei~~li~~~d~---dG~i~f~eFv~~~~~l~~~~~~~~~~~~~~~~~F~~~D~d~~G~I 1218 (1218)
...+...+- ++.+.+-| ..+-+ .-.++|++|-+++...... -+.++|+..|+.++|.|
T Consensus 130 ~~~if~~t~l~~~~~f~~d~efI----~~~Fg~~~~r~~ny~~f~Q~lh~~~~E---------~~~qafr~~d~~~ng~i 196 (694)
T KOG0751|consen 130 VADIFGQTNLHHHIPFNWDSEFI----KLHFGDIRKRHLNYAEFTQFLHEFQLE---------HAEQAFREKDKAKNGFI 196 (694)
T ss_pred HHHHHhccccccCCCccCCcchH----HHHhhhHHHHhccHHHHHHHHHHHHHH---------HHHHHHHHhcccCCCee
Confidence 999988764 34444433 33332 2449999999977765431 13788999999999986
No 60
>KOG4223|consensus
Probab=97.00 E-value=0.00044 Score=77.15 Aligned_cols=88 Identities=17% Similarity=0.170 Sum_probs=72.6
Q ss_pred ccceeeeeeccCCCcccccccHHH-HHHHh-----HHH----HHH-HHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHH
Q psy13030 1097 MCKSLIMLRDTNISGRLNLLDIPL-LMHML-----QFW----RIA-FQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLE 1165 (1218)
Q Consensus 1097 icr~li~~~D~d~~G~i~f~eF~~-l~~~~-----~~~----~~~-F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~ 1165 (1218)
+|..-+..+|+|++|.|+++||+. |+..- .+| ++. |...|+|++|+|+.+||+.-+-=-++.....|..
T Consensus 201 Vi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~ 280 (325)
T KOG4223|consen 201 VIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEAR 280 (325)
T ss_pred HHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHH
Confidence 666678889999999999999996 44322 122 344 4455999999999999998887778899999999
Q ss_pred HHHHHhC--CCCCcCHHHHHH
Q psy13030 1166 CLVLRFT--KNKVLTWENFIM 1184 (1218)
Q Consensus 1166 ~li~~~d--~dG~i~f~eFv~ 1184 (1218)
-|+.+.| +||+++++|-+.
T Consensus 281 hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 281 HLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred HHhhhhccCccccccHHHHhh
Confidence 9999999 799999999765
No 61
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=96.94 E-value=0.00033 Score=61.27 Aligned_cols=52 Identities=13% Similarity=0.218 Sum_probs=44.5
Q ss_pred eeeeeccCCCcccccccHHHHHHHh----------HHHHHHHHhccCCCCCcCCHhhHHHHH
Q psy13030 1101 LIMLRDTNISGRLNLLDIPLLMHML----------QFWRIAFQKFEKGARSRLSSYSLRPLL 1152 (1218)
Q Consensus 1101 li~~~D~d~~G~i~f~eF~~l~~~~----------~~~~~~F~~fD~d~~G~I~~~EL~~aL 1152 (1218)
+...+|+|++|.|+.+||..++..+ ..++.+|+.+|+|++|.|+..|+..++
T Consensus 5 ~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 5 AFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 3456899999999999999998754 245677999999999999999998875
No 62
>KOG0040|consensus
Probab=96.88 E-value=0.0018 Score=82.96 Aligned_cols=85 Identities=14% Similarity=0.257 Sum_probs=67.7
Q ss_pred hHHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCC-------HHHHHHHHHHhC--CCCCcCHHHHHHHHHHHHHhcCC
Q psy13030 1125 LQFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVS-------NKVLECLVLRFT--KNKVLTWENFIMAMVRLHLAHGH 1195 (1218)
Q Consensus 1125 ~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls-------~~ei~~li~~~d--~dG~i~f~eFv~~~~~l~~~~~~ 1195 (1218)
+.++.-+|+.||++++|.++..+++..|+.+|+.++ +.++++++.-+| .+|.|+..+|+..|+.-.+.--.
T Consensus 2252 L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~ 2331 (2399)
T KOG0040|consen 2252 LKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENIL 2331 (2399)
T ss_pred HHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccccccc
Confidence 455667899999999999999999999999999883 237999999999 68999999999988876542112
Q ss_pred CchhhhHhhhccccccC
Q psy13030 1196 PNDYLFLTLFMFKKTDV 1212 (1218)
Q Consensus 1196 ~~~~~~~~~~~F~~~D~ 1212 (1218)
+.+ ++-.||+.+|.
T Consensus 2332 s~~---eIE~AfraL~a 2345 (2399)
T KOG0040|consen 2332 SSE---EIEDAFRALDA 2345 (2399)
T ss_pred chH---HHHHHHHHhhc
Confidence 223 34667777776
No 63
>KOG0377|consensus
Probab=96.81 E-value=0.0023 Score=73.25 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=54.2
Q ss_pred HHHHHHHHhccCCCCCcCCHhhHHHHHHhcC----CCCCHHHHHHHHHHhC--CCCCcCHHHHHHHH
Q psy13030 1126 QFWRIAFQKFEKGARSRLSSYSLRPLLWEAG----STVSNKVLECLVLRFT--KNKVLTWENFIMAM 1186 (1218)
Q Consensus 1126 ~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG----~~ls~~ei~~li~~~d--~dG~i~f~eFv~~~ 1186 (1218)
..+..+|+..|+|++|.|+.+|++.+.+-++ ..++++++.++.+.+| +||.|++.||+++.
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAF 613 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAF 613 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHH
Confidence 3456799999999999999999999987654 6889999999999999 89999999999853
No 64
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.27 E-value=0.003 Score=44.28 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=22.0
Q ss_pred HHHHHHhccCCCCCcCCHhhHHHHH
Q psy13030 1128 WRIAFQKFEKGARSRLSSYSLRPLL 1152 (1218)
Q Consensus 1128 ~~~~F~~fD~d~~G~I~~~EL~~aL 1152 (1218)
++++|+.+|+|+||.|+..|++.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3678999999999999999998864
No 65
>KOG2562|consensus
Probab=96.25 E-value=0.012 Score=68.58 Aligned_cols=111 Identities=11% Similarity=0.248 Sum_probs=78.2
Q ss_pred eeeeeeccCCCcccccccHHH--HHHHhH------------------HHHHH---HHhccCCCCCcCCHhhHHHHHHhcC
Q psy13030 1100 SLIMLRDTNISGRLNLLDIPL--LMHMLQ------------------FWRIA---FQKFEKGARSRLSSYSLRPLLWEAG 1156 (1218)
Q Consensus 1100 ~li~~~D~d~~G~i~f~eF~~--l~~~~~------------------~~~~~---F~~fD~d~~G~I~~~EL~~aL~~lG 1156 (1218)
.+.-..+..++|+|...|-++ +...+. ....+ |-..|+|++|.|+.++|..--.+.
T Consensus 229 rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~t- 307 (493)
T KOG2562|consen 229 RIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHT- 307 (493)
T ss_pred hhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhccc-
Confidence 345566777888777665542 111111 11233 777899999999999988765554
Q ss_pred CCCCHHHHHHHHHHhC------CCCCcCHHHHHHHHHHHHHhcCCCchhhhHhhhccccccCCCCCcC
Q psy13030 1157 STVSNKVLECLVLRFT------KNKVLTWENFIMAMVRLHLAHGHPNDYLFLTLFMFKKTDVDQIGEV 1218 (1218)
Q Consensus 1157 ~~ls~~ei~~li~~~d------~dG~i~f~eFv~~~~~l~~~~~~~~~~~~~~~~~F~~~D~d~~G~I 1218 (1218)
++...++.+++++. .+|+++|++|+-.+.+++.. +++..+ .+-|+-+|-|++|.+
T Consensus 308 --lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k--~t~~Sl---eYwFrclDld~~G~L 368 (493)
T KOG2562|consen 308 --LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDK--DTPASL---EYWFRCLDLDGDGIL 368 (493)
T ss_pred --hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccC--CCccch---hhheeeeeccCCCcc
Confidence 46777888888544 68999999999999998864 333222 566999999999975
No 66
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=96.24 E-value=0.0039 Score=45.40 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.7
Q ss_pred HHHHHHHHhC--CCCCcCHHHHHHHHHHH
Q psy13030 1163 VLECLVLRFT--KNKVLTWENFIMAMVRL 1189 (1218)
Q Consensus 1163 ei~~li~~~d--~dG~i~f~eFv~~~~~l 1189 (1218)
|++.+++.+| +||.|+|+||+.+|.+|
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 6889999999 79999999999977653
No 67
>KOG0046|consensus
Probab=95.98 E-value=0.014 Score=68.83 Aligned_cols=66 Identities=14% Similarity=0.251 Sum_probs=58.7
Q ss_pred hHHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCC---CHHHHHHHHHHhC--CCCCcCHHHHHHHHHHHHH
Q psy13030 1125 LQFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTV---SNKVLECLVLRFT--KNKVLTWENFIMAMVRLHL 1191 (1218)
Q Consensus 1125 ~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~l---s~~ei~~li~~~d--~dG~i~f~eFv~~~~~l~~ 1191 (1218)
+..+++.|...| |++|+|+..||..++.+++... ..+|+++++...+ .+|.|+|++|++++..++.
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s 88 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKS 88 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhh
Confidence 567789999999 9999999999999999988654 5789999999999 6899999999998887765
No 68
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=95.86 E-value=0.0074 Score=52.57 Aligned_cols=57 Identities=5% Similarity=0.000 Sum_probs=47.8
Q ss_pred ceeeeeeccCCCcccccccHHHHHHHh----HHHHHHHHhccCCCCCcCCHhhHHHHHHhc
Q psy13030 1099 KSLIMLRDTNISGRLNLLDIPLLMHML----QFWRIAFQKFEKGARSRLSSYSLRPLLWEA 1155 (1218)
Q Consensus 1099 r~li~~~D~d~~G~i~f~eF~~l~~~~----~~~~~~F~~fD~d~~G~I~~~EL~~aL~~l 1155 (1218)
+.+...+|.+++|.|+.+|+..++..+ ..++++|+.+|.+++|.|+..|+..++..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 344556789999999999999988643 567899999999999999999999888654
No 69
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=95.52 E-value=0.0085 Score=50.33 Aligned_cols=52 Identities=12% Similarity=0.161 Sum_probs=44.6
Q ss_pred eeeeeccCCCcccccccHHHHHHHh------HHHHHHHHhccCCCCCcCCHhhHHHHH
Q psy13030 1101 LIMLRDTNISGRLNLLDIPLLMHML------QFWRIAFQKFEKGARSRLSSYSLRPLL 1152 (1218)
Q Consensus 1101 li~~~D~d~~G~i~f~eF~~l~~~~------~~~~~~F~~fD~d~~G~I~~~EL~~aL 1152 (1218)
+...+|.+++|.|+++||..++..+ +.++.+|+.+|.+++|.|+..|+...+
T Consensus 5 ~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 5 AFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 3456789999999999999998754 567889999999999999999998765
No 70
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=95.43 E-value=0.016 Score=48.54 Aligned_cols=46 Identities=11% Similarity=0.170 Sum_probs=40.0
Q ss_pred CCcccccccHHHHHHHh-------HHHHHHHHhccCCCCCcCCHhhHHHHHHh
Q psy13030 1109 ISGRLNLLDIPLLMHML-------QFWRIAFQKFEKGARSRLSSYSLRPLLWE 1154 (1218)
Q Consensus 1109 ~~G~i~f~eF~~l~~~~-------~~~~~~F~~fD~d~~G~I~~~EL~~aL~~ 1154 (1218)
.+|.|+.+||..++..+ .+...+|..+|.|++|+|+..|+..+|+.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 36899999999988642 46789999999999999999999999875
No 71
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=95.33 E-value=0.011 Score=56.17 Aligned_cols=66 Identities=8% Similarity=0.053 Sum_probs=54.2
Q ss_pred ccceeeeeeccCCCcccccccHHHHHHHh----HHHHHHHHhccCCCCCcCCHhhHHHHHHhc-----CCCCCHH
Q psy13030 1097 MCKSLIMLRDTNISGRLNLLDIPLLMHML----QFWRIAFQKFEKGARSRLSSYSLRPLLWEA-----GSTVSNK 1162 (1218)
Q Consensus 1097 icr~li~~~D~d~~G~i~f~eF~~l~~~~----~~~~~~F~~fD~d~~G~I~~~EL~~aL~~l-----G~~ls~~ 1162 (1218)
.++.+...+|.+++|.|++.|+..++..+ .++.++|+.+|.+++|+|+.+|+..+|..+ |.+++.+
T Consensus 11 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~~~~ 85 (96)
T smart00027 11 KYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPIPAS 85 (96)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCCCcc
Confidence 44555667899999999999999998653 567899999999999999999999987643 7776653
No 72
>KOG2643|consensus
Probab=95.28 E-value=0.08 Score=61.55 Aligned_cols=83 Identities=19% Similarity=0.330 Sum_probs=61.1
Q ss_pred eeeccCCCcccccccHHHHHHHhH--HHHHHHHhccCCCCCcCCHhhHHHHHHhc-CCCCCHHH--HHHHHHHhCCCC-C
Q psy13030 1103 MLRDTNISGRLNLLDIPLLMHMLQ--FWRIAFQKFEKGARSRLSSYSLRPLLWEA-GSTVSNKV--LECLVLRFTKNK-V 1176 (1218)
Q Consensus 1103 ~~~D~d~~G~i~f~eF~~l~~~~~--~~~~~F~~fD~d~~G~I~~~EL~~aL~~l-G~~ls~~e--i~~li~~~d~dG-~ 1176 (1218)
..+..+++++++++||++.+..++ -++--|..||+..+|.|+..++...|-.. |.+..+.+ +..+-++++.+| .
T Consensus 293 yFFG~rg~~kLs~deF~~F~e~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~g 372 (489)
T KOG2643|consen 293 YFFGKRGNGKLSIDEFLKFQENLQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKG 372 (489)
T ss_pred HhhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCC
Confidence 456889999999999999998764 23445999999999999999999887544 44433332 345555555434 4
Q ss_pred cCHHHHHHH
Q psy13030 1177 LTWENFIMA 1185 (1218)
Q Consensus 1177 i~f~eFv~~ 1185 (1218)
|+++||...
T Consensus 373 ISl~Ef~~F 381 (489)
T KOG2643|consen 373 ISLQEFKAF 381 (489)
T ss_pred cCHHHHHHH
Confidence 999998765
No 73
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=95.25 E-value=0.028 Score=66.65 Aligned_cols=49 Identities=6% Similarity=0.028 Sum_probs=42.1
Q ss_pred HHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC--CCCCcCHHHHHHHHH
Q psy13030 1126 QFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT--KNKVLTWENFIMAMV 1187 (1218)
Q Consensus 1126 ~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d--~dG~i~f~eFv~~~~ 1187 (1218)
..++.+|+.||+|++|.|+.+|+.. ++.|+..+| +||.|+++||...+.
T Consensus 334 ~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 334 HAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 4567899999999999999999931 578999999 789999999988554
No 74
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=95.21 E-value=0.04 Score=53.06 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=51.2
Q ss_pred hHHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC--CCCCcCHHHHHHHHH
Q psy13030 1125 LQFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT--KNKVLTWENFIMAMV 1187 (1218)
Q Consensus 1125 ~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d--~dG~i~f~eFv~~~~ 1187 (1218)
.+.+..+|...|. ++|.|+..+.+..|... +|+.+++..|..-.| +||.++++||+-+|-
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 4567899999984 68999999999999885 578899999999999 799999999987543
No 75
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.10 E-value=0.014 Score=54.46 Aligned_cols=65 Identities=12% Similarity=0.055 Sum_probs=51.1
Q ss_pred hhHHHHHHHhcCCCCccCHHHHHHHHhhhccC---cccccCCCceeeeeeccCCCCccChHHHHHHHHH
Q psy13030 645 DGKSLVAKLLVKYPLEVDVSQFQKILRSHWKE---NTVVLPDGKSLVAKLLVKYPLEVDVSQFQKILRS 710 (1218)
Q Consensus 645 ~~~~lF~~~ag~~d~ei~a~eLq~~Ln~~~~~---~~~~~~~crs~v~~~d~~~~g~l~~~ef~~l~~~ 710 (1218)
..-.+|.++||+ ...++-.||+++|++.++. ..-...+...++..+|.+.+|+++|.||..|...
T Consensus 9 ~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 9 KMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 356789999998 7899999999999998841 1122233456677899999999999999998544
No 76
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=94.94 E-value=0.021 Score=53.42 Aligned_cols=65 Identities=15% Similarity=0.104 Sum_probs=53.1
Q ss_pred hhhHHHHHHHhc--CCCCccCHHHHHHHHhhhccCccccc-CCCceeeeeeccCCCCccChHHHHHHHHH
Q psy13030 644 PDGKSLVAKLLV--KYPLEVDVSQFQKILRSHWKENTVVL-PDGKSLVAKLLVKYPLEVDVSQFQKILRS 710 (1218)
Q Consensus 644 ~~~~~lF~~~ag--~~d~ei~a~eLq~~Ln~~~~~~~~~~-~~crs~v~~~d~~~~g~l~~~ef~~l~~~ 710 (1218)
..++..|..+++ . ++.|+..||+.+|.+.+... .+. +.+..|+.-+|.|++|+++|.||..+..+
T Consensus 8 ~~l~~~F~~fd~~~~-~g~i~~~ELk~ll~~elg~~-ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 8 ETLVSNFHKASVKGG-KESLTASEFQELLTQQLPHL-LKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHhCCCC-CCeECHHHHHHHHHHHhhhh-ccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 357889999997 5 78999999999999855321 223 56899999999999999999999988655
No 77
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=94.88 E-value=0.037 Score=51.79 Aligned_cols=52 Identities=10% Similarity=0.079 Sum_probs=44.4
Q ss_pred eccCCCc-ccccccHHHHHHHh-----------HHHHHHHHhccCCCCCcCCHhhHHHHHHhcC
Q psy13030 1105 RDTNISG-RLNLLDIPLLMHML-----------QFWRIAFQKFEKGARSRLSSYSLRPLLWEAG 1156 (1218)
Q Consensus 1105 ~D~d~~G-~i~f~eF~~l~~~~-----------~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG 1156 (1218)
.|.+++| .|+.+||..++... .++.++++.+|.|++|.|+.+|+-..+..+.
T Consensus 19 ~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 19 AGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred hccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 4567765 99999999999753 4688999999999999999999999887763
No 78
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=94.88 E-value=0.047 Score=44.99 Aligned_cols=48 Identities=19% Similarity=0.148 Sum_probs=37.8
Q ss_pred cCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC--CCCCcCHHHHHHHHHHH
Q psy13030 1142 RLSSYSLRPLLWEAGSTVSNKVLECLVLRFT--KNKVLTWENFIMAMVRL 1189 (1218)
Q Consensus 1142 ~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d--~dG~i~f~eFv~~~~~l 1189 (1218)
+++..|++..|+.+...++++-+..|+++.| ++|.++.+||+..+-.|
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 3678999999999999999999999999999 78999999999876554
No 79
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=94.58 E-value=0.048 Score=51.46 Aligned_cols=55 Identities=5% Similarity=-0.008 Sum_probs=46.2
Q ss_pred eeeec-cCCCc-ccccccHHHHHHHh-----------HHHHHHHHhccCCCCCcCCHhhHHHHHHhcC
Q psy13030 1102 IMLRD-TNISG-RLNLLDIPLLMHML-----------QFWRIAFQKFEKGARSRLSSYSLRPLLWEAG 1156 (1218)
Q Consensus 1102 i~~~D-~d~~G-~i~f~eF~~l~~~~-----------~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG 1156 (1218)
...+| .|++| +|+..|+..++... .++.++++.+|.|++|.|+..|+..+|..|.
T Consensus 16 F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 16 FHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 44566 68998 69999999998541 3588999999999999999999999988763
No 80
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=94.40 E-value=0.05 Score=50.54 Aligned_cols=55 Identities=5% Similarity=0.018 Sum_probs=47.2
Q ss_pred eeeeecc--CCCcccccccHHHHHHH-----------hHHHHHHHHhccCCCCCcCCHhhHHHHHHhc
Q psy13030 1101 LIMLRDT--NISGRLNLLDIPLLMHM-----------LQFWRIAFQKFEKGARSRLSSYSLRPLLWEA 1155 (1218)
Q Consensus 1101 li~~~D~--d~~G~i~f~eF~~l~~~-----------~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~l 1155 (1218)
....+|. +++|.|+.+||..++.. ..++.++++.+|.+++|.|+.+|+..+|..+
T Consensus 13 ~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 13 VFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 3456788 79999999999998853 3567889999999999999999999998876
No 81
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=94.23 E-value=0.026 Score=53.07 Aligned_cols=58 Identities=7% Similarity=0.073 Sum_probs=48.2
Q ss_pred ceeeeeec-cCCCc-ccccccHHHHHHH-h----------HHHHHHHHhccCCCCCcCCHhhHHHHHHhcC
Q psy13030 1099 KSLIMLRD-TNISG-RLNLLDIPLLMHM-L----------QFWRIAFQKFEKGARSRLSSYSLRPLLWEAG 1156 (1218)
Q Consensus 1099 r~li~~~D-~d~~G-~i~f~eF~~l~~~-~----------~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG 1156 (1218)
+.....+| .+++| .|+..||..++.. + .+++++|+.+|.|++|.|+..|+..++..+.
T Consensus 12 ~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 12 INVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 34455676 99999 5999999999863 2 4588999999999999999999999887764
No 82
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=94.14 E-value=0.03 Score=52.84 Aligned_cols=57 Identities=7% Similarity=-0.002 Sum_probs=47.6
Q ss_pred eeeeecc-CC-CcccccccHHHHHHH-----------hHHHHHHHHhccCCCCCcCCHhhHHHHHHhcCC
Q psy13030 1101 LIMLRDT-NI-SGRLNLLDIPLLMHM-----------LQFWRIAFQKFEKGARSRLSSYSLRPLLWEAGS 1157 (1218)
Q Consensus 1101 li~~~D~-d~-~G~i~f~eF~~l~~~-----------~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~ 1157 (1218)
....+|. |+ +|.|+.+|+..++.. .+++.++|+.+|.|++|.|+.+|+..++..++.
T Consensus 13 ~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 13 TFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 3456776 87 699999999998763 145789999999999999999999999987764
No 83
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=93.68 E-value=0.038 Score=51.62 Aligned_cols=59 Identities=5% Similarity=0.029 Sum_probs=48.2
Q ss_pred cceeeeeec-cCCCc-ccccccHHHHHHH-----h------HHHHHHHHhccCCCCCcCCHhhHHHHHHhcC
Q psy13030 1098 CKSLIMLRD-TNISG-RLNLLDIPLLMHM-----L------QFWRIAFQKFEKGARSRLSSYSLRPLLWEAG 1156 (1218)
Q Consensus 1098 cr~li~~~D-~d~~G-~i~f~eF~~l~~~-----~------~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG 1156 (1218)
.+.....+| .|++| .|+.+|+..++.. + .+..++++..|+|++|.|+.+|+-.++..+.
T Consensus 10 l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 10 LIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 334455677 69999 5999999999986 3 3478899999999999999999988887653
No 84
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=93.57 E-value=0.071 Score=52.40 Aligned_cols=53 Identities=11% Similarity=0.065 Sum_probs=43.7
Q ss_pred eeeeeccCCCcccccccHHHHHHH--hHHHHHHHHhccCCCCCcCCHhhHHHHHH
Q psy13030 1101 LIMLRDTNISGRLNLLDIPLLMHM--LQFWRIAFQKFEKGARSRLSSYSLRPLLW 1153 (1218)
Q Consensus 1101 li~~~D~d~~G~i~f~eF~~l~~~--~~~~~~~F~~fD~d~~G~I~~~EL~~aL~ 1153 (1218)
+...+|.|++|.|+.+|...+... -......|..+|.|++|.||.+|.+..|.
T Consensus 53 ~F~~lD~d~DG~Ls~~EL~~~~l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 53 MFNQLDGNYDGKLSHHELAPIRLDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHCCCCCCcCCHHHHHHHHccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 345679999999999999977521 23456789999999999999999999983
No 85
>KOG4065|consensus
Probab=93.24 E-value=0.13 Score=48.97 Aligned_cols=55 Identities=18% Similarity=0.220 Sum_probs=43.8
Q ss_pred HHHHhccCCCCCcCCHhhHHHHHHhc------CC----CCCHHHHHHHHHHh----C--CCCCcCHHHHHH
Q psy13030 1130 IAFQKFEKGARSRLSSYSLRPLLWEA------GS----TVSNKVLECLVLRF----T--KNKVLTWENFIM 1184 (1218)
Q Consensus 1130 ~~F~~fD~d~~G~I~~~EL~~aL~~l------G~----~ls~~ei~~li~~~----d--~dG~i~f~eFv~ 1184 (1218)
.-|...|-|++|.|+.-||-.|++.. |. -.++.|++.||..+ | +||.|+|.||++
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 45899999999999999999999754 43 24567777776654 3 689999999987
No 86
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=92.93 E-value=0.049 Score=64.58 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=44.8
Q ss_pred ccceeeeeeccCCCcccccccHHHHHHHhHHHHHHHHhccCCCCCcCCHhhHHHHHHhc
Q psy13030 1097 MCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGARSRLSSYSLRPLLWEA 1155 (1218)
Q Consensus 1097 icr~li~~~D~d~~G~i~f~eF~~l~~~~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~l 1155 (1218)
.++.+...+|.+++|.|+.+||+. ...+|+.+|.|++|.|+.+|++.++..+
T Consensus 335 ~l~~aF~~~D~dgdG~Is~~E~~~-------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 335 AAQEIFRLYDLDGDGFITREEWLG-------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHH-------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 345567789999999999999953 4678999999999999999999998753
No 87
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=92.84 E-value=0.092 Score=36.45 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=23.8
Q ss_pred HHHHHHhccCCCCCcCCHhhHHHHHHhc
Q psy13030 1128 WRIAFQKFEKGARSRLSSYSLRPLLWEA 1155 (1218)
Q Consensus 1128 ~~~~F~~fD~d~~G~I~~~EL~~aL~~l 1155 (1218)
++++|+.+|.+++|.|+..|++.+++++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~~ 29 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKAL 29 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHhC
Confidence 5678999999999999999999888753
No 88
>KOG4666|consensus
Probab=92.82 E-value=0.093 Score=58.64 Aligned_cols=90 Identities=14% Similarity=0.100 Sum_probs=71.3
Q ss_pred ccceeeeeeccCCCcccccccHHHHHHH-------hHHHHHHHHhccCCCCCcCCHhhHHHHHHh-cCCCCCHHHHHHHH
Q psy13030 1097 MCKSLIMLRDTNISGRLNLLDIPLLMHM-------LQFWRIAFQKFEKGARSRLSSYSLRPLLWE-AGSTVSNKVLECLV 1168 (1218)
Q Consensus 1097 icr~li~~~D~d~~G~i~f~eF~~l~~~-------~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~-lG~~ls~~ei~~li 1168 (1218)
.-+.++.++|.+++|.++|-|...-... ..-++-+|+.||.+-||++...+|.-+|+. +|. .+-.+-.++
T Consensus 260 ~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv--~~l~v~~lf 337 (412)
T KOG4666|consen 260 KLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGV--EVLRVPVLF 337 (412)
T ss_pred hhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCc--ceeeccccc
Confidence 4456888999999999999987654432 356788999999999999999999999986 453 333445678
Q ss_pred HHhC--CCCCcCHHHHHHHHHH
Q psy13030 1169 LRFT--KNKVLTWENFIMAMVR 1188 (1218)
Q Consensus 1169 ~~~d--~dG~i~f~eFv~~~~~ 1188 (1218)
...+ +||+|.|++|-+.+..
T Consensus 338 ~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 338 PSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred hhhhcccCcceeHHHHHHHHHh
Confidence 8888 6899999999886664
No 89
>KOG0377|consensus
Probab=92.05 E-value=0.22 Score=57.64 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=65.8
Q ss_pred HHHHHHHHhccCCCCCcCCHhhHHHHHHhc-CCCCCHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhcCCCchhhhHhh
Q psy13030 1126 QFWRIAFQKFEKGARSRLSSYSLRPLLWEA-GSTVSNKVLECLVLRFTKNKVLTWENFIMAMVRLHLAHGHPNDYLFLTL 1204 (1218)
Q Consensus 1126 ~~~~~~F~~fD~d~~G~I~~~EL~~aL~~l-G~~ls~~ei~~li~~~d~dG~i~f~eFv~~~~~l~~~~~~~~~~~~~~~ 1204 (1218)
.++...|+.+|.+++|+|+...-..+|..+ |.+|+=..+..=+...+.||.+.|.+-.+.+.......+ -...+-++.
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~e-a~~slvetL 542 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEE-AGSSLVETL 542 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHH-HHhHHHHHH
Confidence 467789999999999999999999999875 888887766554455557899999988775443222111 112222222
Q ss_pred --------hccccccCCCCCcC
Q psy13030 1205 --------FMFKKTDVDQIGEV 1218 (1218)
Q Consensus 1205 --------~~F~~~D~d~~G~I 1218 (1218)
-+|+..|+|++|.|
T Consensus 543 Yr~ks~LetiF~~iD~D~SG~i 564 (631)
T KOG0377|consen 543 YRNKSSLETIFNIIDADNSGEI 564 (631)
T ss_pred HhchhhHHHHHHHhccCCCCce
Confidence 34888999999987
No 90
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=91.56 E-value=0.21 Score=46.69 Aligned_cols=53 Identities=6% Similarity=-0.018 Sum_probs=43.9
Q ss_pred eecc-CC-CcccccccHHHHHHH---------hHHHHHHHHhccCCCCCcCCHhhHHHHHHhcC
Q psy13030 1104 LRDT-NI-SGRLNLLDIPLLMHM---------LQFWRIAFQKFEKGARSRLSSYSLRPLLWEAG 1156 (1218)
Q Consensus 1104 ~~D~-d~-~G~i~f~eF~~l~~~---------~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG 1156 (1218)
.+|. +| +|.|+.+||..++.. .+++.++|+..|.|++|.|+.+|+-..|..+.
T Consensus 18 ~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 18 KYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 3455 56 889999999999952 25678899999999999999999988887664
No 91
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=90.84 E-value=0.087 Score=51.59 Aligned_cols=53 Identities=11% Similarity=0.201 Sum_probs=39.8
Q ss_pred HHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC--CCCCcCHHHHHHH
Q psy13030 1131 AFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT--KNKVLTWENFIMA 1185 (1218)
Q Consensus 1131 ~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d--~dG~i~f~eFv~~ 1185 (1218)
-|...|+|+||.|+..||+.+..-| ...+.-+...++..| +||.|++.|+..|
T Consensus 59 ~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 59 KFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 4999999999999999999988766 455666788899999 7999999999764
No 92
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=90.58 E-value=0.39 Score=44.79 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=41.1
Q ss_pred CCcccccccHHHHHHH-----------hHHHHHHHHhccCCCCCcCCHhhHHHHHHhc
Q psy13030 1109 ISGRLNLLDIPLLMHM-----------LQFWRIAFQKFEKGARSRLSSYSLRPLLWEA 1155 (1218)
Q Consensus 1109 ~~G~i~f~eF~~l~~~-----------~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~l 1155 (1218)
.+|.|+.+||..++.. -.++.++|+.+|.|++|.|+.+|+..++..+
T Consensus 23 ~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 23 HPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred CcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5789999999999962 3568899999999999999999999988765
No 93
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=88.49 E-value=1 Score=41.35 Aligned_cols=61 Identities=20% Similarity=0.346 Sum_probs=50.6
Q ss_pred HHHHHHHhccCCCCCcCCHhhHHHHHHhc-CC-CCCHHHHHHHHHHhC------CCCCcCHHHHHHHHHH
Q psy13030 1127 FWRIAFQKFEKGARSRLSSYSLRPLLWEA-GS-TVSNKVLECLVLRFT------KNKVLTWENFIMAMVR 1188 (1218)
Q Consensus 1127 ~~~~~F~~fD~d~~G~I~~~EL~~aL~~l-G~-~ls~~ei~~li~~~d------~dG~i~f~eFv~~~~~ 1188 (1218)
+++++|+.+-. +.+.|+.++|+.-|+.- |. .++.+++..||.+|. ..+.+++++|...|..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 36789999954 78999999999999865 55 679999999999996 3688999999885543
No 94
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=87.98 E-value=0.45 Score=33.36 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=18.9
Q ss_pred HHHHHHHhC--CCCCcCHHHHHHH
Q psy13030 1164 LECLVLRFT--KNKVLTWENFIMA 1185 (1218)
Q Consensus 1164 i~~li~~~d--~dG~i~f~eFv~~ 1185 (1218)
|+.+++.+| +||.|+++||.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 467889999 7999999999874
No 95
>KOG0038|consensus
Probab=86.00 E-value=1.3 Score=44.21 Aligned_cols=68 Identities=12% Similarity=0.094 Sum_probs=42.4
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHhcCCCchhhhHhhhccccccCCCCCcC
Q psy13030 1146 YSLRPLLWEAGSTVSNKVLECLVLRFTKNKVLTWENFIMAMVRLHLAHGHPNDYLFLTLFMFKKTDVDQIGEV 1218 (1218)
Q Consensus 1146 ~EL~~aL~~lG~~ls~~ei~~li~~~d~dG~i~f~eFv~~~~~l~~~~~~~~~~~~~~~~~F~~~D~d~~G~I 1218 (1218)
.|+-.-|-+|-.+.=.+-|-+.+++ |++|.++|++|+.+..-..- .-+.+ ..+.+||+.+|=|++++|
T Consensus 58 ~e~i~kMPELkenpfk~ri~e~FSe-DG~GnlsfddFlDmfSV~sE---~APrd-lK~~YAFkIYDfd~D~~i 125 (189)
T KOG0038|consen 58 FELIEKMPELKENPFKRRICEVFSE-DGRGNLSFDDFLDMFSVFSE---MAPRD-LKAKYAFKIYDFDGDEFI 125 (189)
T ss_pred HHHHhhChhhhcChHHHHHHHHhcc-CCCCcccHHHHHHHHHHHHh---hChHH-hhhhheeEEeecCCCCcc
Confidence 4555556666655544444333222 27888999999996554321 11222 256889999999999886
No 96
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=85.84 E-value=0.94 Score=37.53 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=31.7
Q ss_pred cccccHHHHHHHh------HHHHHHHHhccCCCCCcCCHhhHHHHHHhc
Q psy13030 1113 LNLLDIPLLMHML------QFWRIAFQKFEKGARSRLSSYSLRPLLWEA 1155 (1218)
Q Consensus 1113 i~f~eF~~l~~~~------~~~~~~F~~fD~d~~G~I~~~EL~~aL~~l 1155 (1218)
++|.|-..+...+ .....+|+..|++++|+|+..|+....+.|
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 5566665555543 244679999999999999999999887754
No 97
>KOG4251|consensus
Probab=84.56 E-value=0.52 Score=50.74 Aligned_cols=89 Identities=9% Similarity=0.028 Sum_probs=71.5
Q ss_pred cccceeeeeeccCCCcccccccHHHHHHH---------h-----H-HHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCC
Q psy13030 1096 DMCKSLIMLRDTNISGRLNLLDIPLLMHM---------L-----Q-FWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVS 1160 (1218)
Q Consensus 1096 ~icr~li~~~D~d~~G~i~f~eF~~l~~~---------~-----~-~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls 1160 (1218)
.+++.++..+|.|++-.++..||+.+... + + ..++.=...|.+++|..+..||...+--+.+.+.
T Consensus 236 fmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~a 315 (362)
T KOG4251|consen 236 FMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLA 315 (362)
T ss_pred HHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhh
Confidence 46667788889999999999999876521 1 1 1234334569999999999999999888888999
Q ss_pred HHHHHHHHHHhC--CCCCcCHHHHHH
Q psy13030 1161 NKVLECLVLRFT--KNKVLTWENFIM 1184 (1218)
Q Consensus 1161 ~~ei~~li~~~d--~dG~i~f~eFv~ 1184 (1218)
..++..|+.--| +|-+++.++.++
T Consensus 316 lne~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 316 LNEVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred HHHHHHHHhhhccCCCcccCHHHHHH
Confidence 999999999888 567799998876
No 98
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=83.46 E-value=1.1 Score=32.99 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=20.8
Q ss_pred HHHHHHHHhC--CCCCcCHHHHHHHHH
Q psy13030 1163 VLECLVLRFT--KNKVLTWENFIMAMV 1187 (1218)
Q Consensus 1163 ei~~li~~~d--~dG~i~f~eFv~~~~ 1187 (1218)
++..+++.+| +||.|+++||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 4678899999 789999999998776
No 99
>PF09149 DUF1935: Domain of unknown function (DUF1935); InterPro: IPR015232 This entry represents a conserved region found in various bacterial and eukaryotic hypothetical proteins, as well as in the cysteine protease calpain. Its function has not, as yet, been defined. ; PDB: 1R75_A 2FE0_A.
Probab=81.49 E-value=0.67 Score=44.62 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=20.3
Q ss_pred eeceeeecccceEEeeccceeeeccCc
Q psy13030 6 INLSEIMKPYEYVKQFNGDVTHRHMNG 32 (1218)
Q Consensus 6 ~~~~~~~~p~~~~~~~~~~~~~~~~~~ 32 (1218)
+.++++|||+||..++.|.++++.+.-
T Consensus 74 ~~~~v~V~P~eT~~Fv~G~v~gy~~~~ 100 (104)
T PF09149_consen 74 TVAEVVVYPLETELFVEGEVNGYKSKF 100 (104)
T ss_dssp EEEEEEE-TT-EEEEEEEE--SEEEEE
T ss_pred EEEEEEECCccceeeeeecccceEEEE
Confidence 568999999999999999999998653
No 100
>KOG2562|consensus
Probab=81.18 E-value=2.3 Score=50.44 Aligned_cols=78 Identities=12% Similarity=0.092 Sum_probs=55.7
Q ss_pred CCCcccccccHHHHHHHh------HHHHHHHHhccCCCCCcCCHhhHHHH-------HHhcC-CCCCHHHH-HHHHHHhC
Q psy13030 1108 NISGRLNLLDIPLLMHML------QFWRIAFQKFEKGARSRLSSYSLRPL-------LWEAG-STVSNKVL-ECLVLRFT 1172 (1218)
Q Consensus 1108 d~~G~i~f~eF~~l~~~~------~~~~~~F~~fD~d~~G~I~~~EL~~a-------L~~lG-~~ls~~ei-~~li~~~d 1172 (1218)
-.+|+++|.+|+.+...+ ..++=-|+..|.|++|.|+.+||+-. |..+| +.++-+++ .+|+.-+-
T Consensus 327 ~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvk 406 (493)
T KOG2562|consen 327 KVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVK 406 (493)
T ss_pred eecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhC
Confidence 457889999999876533 22344699999999999999999865 45556 45554443 44544444
Q ss_pred --CCCCcCHHHHHHH
Q psy13030 1173 --KNKVLTWENFIMA 1185 (1218)
Q Consensus 1173 --~dG~i~f~eFv~~ 1185 (1218)
+.+.|+..+|.++
T Consensus 407 P~~~~kItLqDlk~s 421 (493)
T KOG2562|consen 407 PEDENKITLQDLKGS 421 (493)
T ss_pred ccCCCceeHHHHhhc
Confidence 4688999999875
No 101
>KOG0041|consensus
Probab=80.07 E-value=4.1 Score=43.16 Aligned_cols=92 Identities=18% Similarity=0.207 Sum_probs=68.0
Q ss_pred ccceeeeeeccCCCcccccccHHHHHHHhH------HHHHHHHhccCCCCCcCCHhhHHHHHHh--cCCCCCHHHHHHHH
Q psy13030 1097 MCKSLIMLRDTNISGRLNLLDIPLLMHMLQ------FWRIAFQKFEKGARSRLSSYSLRPLLWE--AGSTVSNKVLECLV 1168 (1218)
Q Consensus 1097 icr~li~~~D~d~~G~i~f~eF~~l~~~~~------~~~~~F~~fD~d~~G~I~~~EL~~aL~~--lG~~ls~~ei~~li 1168 (1218)
.-.+|...+|.+.+|.|++.|...+|.++. .++..-+..|.|.+|+|+..|+--+.+. .|+--.+..+..|.
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~~~~LA 179 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSGLLRLA 179 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccchHHHHHH
Confidence 334567789999999999999999998874 4678889999999999999997666553 36655566776665
Q ss_pred HH--hC--CCCCcCHHHHHHHHHH
Q psy13030 1169 LR--FT--KNKVLTWENFIMAMVR 1188 (1218)
Q Consensus 1169 ~~--~d--~dG~i~f~eFv~~~~~ 1188 (1218)
+. +| .-|..-=..|.+.-+.
T Consensus 180 r~~eVDVskeGV~GAknFFeAKI~ 203 (244)
T KOG0041|consen 180 RLSEVDVSKEGVSGAKNFFEAKIE 203 (244)
T ss_pred HhcccchhhhhhhhHHHHHHHHHH
Confidence 55 66 4566555666654443
No 102
>PLN02952 phosphoinositide phospholipase C
Probab=78.57 E-value=5.9 Score=49.66 Aligned_cols=78 Identities=18% Similarity=0.197 Sum_probs=59.4
Q ss_pred CCcccccccHHHHHHHh--------HHHHHHHHhccCCCCCcCCHhhHHHHHHhc-CC-CCCHHHHHHHHHHhC------
Q psy13030 1109 ISGRLNLLDIPLLMHML--------QFWRIAFQKFEKGARSRLSSYSLRPLLWEA-GS-TVSNKVLECLVLRFT------ 1172 (1218)
Q Consensus 1109 ~~G~i~f~eF~~l~~~~--------~~~~~~F~~fD~d~~G~I~~~EL~~aL~~l-G~-~ls~~ei~~li~~~d------ 1172 (1218)
++|.++|.||..+...+ .++.++|..+-.++ +.|+.++|+..|+.. |. ..+.++++.|+.++-
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 46899999998766544 48889999996443 689999999999987 33 467777877766542
Q ss_pred ---CCCCcCHHHHHHHHH
Q psy13030 1173 ---KNKVLTWENFIMAMV 1187 (1218)
Q Consensus 1173 ---~dG~i~f~eFv~~~~ 1187 (1218)
..+.+++++|...++
T Consensus 92 ~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccccCcCHHHHHHHHc
Confidence 224599999988665
No 103
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=77.07 E-value=2.4 Score=28.96 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=20.7
Q ss_pred HHHHHHHHhC--CCCCcCHHHHHHHHHH
Q psy13030 1163 VLECLVLRFT--KNKVLTWENFIMAMVR 1188 (1218)
Q Consensus 1163 ei~~li~~~d--~dG~i~f~eFv~~~~~ 1188 (1218)
++..+++.+| ++|.|++++|..++..
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 3567889998 5789999999886653
No 104
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=74.78 E-value=0.69 Score=44.59 Aligned_cols=61 Identities=7% Similarity=-0.076 Sum_probs=48.7
Q ss_pred cChhhHHHHHHHhcCCCCccCHHHHHHHHhhhccCcccccCCCceeeeeeccCCCCccChHHHHHH
Q psy13030 642 VLPDGKSLVAKLLVKYPLEVDVSQFQKILRSHWKENTVVLPDGKSLVAKLLVKYPLEVDVSQFQKI 707 (1218)
Q Consensus 642 ~~~~~~~lF~~~ag~~d~ei~a~eLq~~Ln~~~~~~~~~~~~crs~v~~~d~~~~g~l~~~ef~~l 707 (1218)
+...|..+|..+... ++.|+..+...+|.+.- ...++-..+..|-|.+.+|+|++.||--.
T Consensus 8 e~~~y~~~F~~l~~~-~g~isg~~a~~~f~~S~----L~~~~L~~IW~LaD~~~dG~L~~~EF~iA 68 (104)
T PF12763_consen 8 EKQKYDQIFQSLDPQ-DGKISGDQAREFFMKSG----LPRDVLAQIWNLADIDNDGKLDFEEFAIA 68 (104)
T ss_dssp HHHHHHHHHHCTSSS-TTEEEHHHHHHHHHHTT----SSHHHHHHHHHHH-SSSSSEEEHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-CCeEeHHHHHHHHHHcC----CCHHHHHHHHhhhcCCCCCcCCHHHHHHH
Confidence 457899999999888 89999999999887643 33334467778999999999999999754
No 105
>KOG1707|consensus
Probab=72.96 E-value=10 Score=46.67 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=66.4
Q ss_pred hhccCCcccccceeeeeeccCCCcccccccHHH------HH---------HHhHHHHHHHHhccCCCCCcCCHhhHHHHH
Q psy13030 1088 YLLEKPSLDMCKSLIMLRDTNISGRLNLLDIPL------LM---------HMLQFWRIAFQKFEKGARSRLSSYSLRPLL 1152 (1218)
Q Consensus 1088 f~~~f~sl~icr~li~~~D~d~~G~i~f~eF~~------l~---------~~~~~~~~~F~~fD~d~~G~I~~~EL~~aL 1152 (1218)
....|..+++|-......+.+-+-...|.+=.- || ..++.|..||+..|.|.+|.++-.||-..-
T Consensus 142 im~~f~EiEtciecSA~~~~n~~e~fYyaqKaVihPt~PLyda~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ 221 (625)
T KOG1707|consen 142 IMIAFAEIETCIECSALTLANVSELFYYAQKAVIHPTSPLYDAEEQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQ 221 (625)
T ss_pred HHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeeccCccccccccccccHHHHHHHHHHHhhhccccccccchhhhhHHH
Confidence 445677777777665544443332221111000 01 135778999999999999999999998876
Q ss_pred H-hcCCCCCHHHHHHHHHHhC---CCC----CcCHHHHHHH
Q psy13030 1153 W-EAGSTVSNKVLECLVLRFT---KNK----VLTWENFIMA 1185 (1218)
Q Consensus 1153 ~-~lG~~ls~~ei~~li~~~d---~dG----~i~f~eFv~~ 1185 (1218)
+ .+|-++...+++.+....+ .+| .++...|+.+
T Consensus 222 ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL 262 (625)
T KOG1707|consen 222 KKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFL 262 (625)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHH
Confidence 5 4699999999988888777 344 4788888764
No 106
>KOG0042|consensus
Probab=72.56 E-value=5.3 Score=48.54 Aligned_cols=66 Identities=9% Similarity=0.044 Sum_probs=59.5
Q ss_pred HHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC--CCCCcCHHHHHHHHHHHHH
Q psy13030 1126 QFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT--KNKVLTWENFIMAMVRLHL 1191 (1218)
Q Consensus 1126 ~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d--~dG~i~f~eFv~~~~~l~~ 1191 (1218)
...+.-|..+|.|+.|+++.+.+.++|++.+.+.+++.+++++.+.| .+|.+...||.+++..++.
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhc
Confidence 34466799999999999999999999999999999999999999999 5899999999998887664
No 107
>KOG2243|consensus
Probab=70.61 E-value=6 Score=51.43 Aligned_cols=55 Identities=11% Similarity=0.272 Sum_probs=44.1
Q ss_pred HHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC--CCCCcCHHHHHHH
Q psy13030 1130 IAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT--KNKVLTWENFIMA 1185 (1218)
Q Consensus 1130 ~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d--~dG~i~f~eFv~~ 1185 (1218)
+.|+.||.||.|.|+..++.+||..- ..-+..|++-+++-.. .+..++|++|+..
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~r 4117 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDR 4117 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHH
Confidence 57999999999999999999999764 3557778877776655 5667999999873
No 108
>KOG0751|consensus
Probab=70.27 E-value=5.4 Score=47.39 Aligned_cols=77 Identities=13% Similarity=0.198 Sum_probs=57.2
Q ss_pred CCCcccccccHHHHHHH--hHHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC--CCC-CcCHHHH
Q psy13030 1108 NISGRLNLLDIPLLMHM--LQFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT--KNK-VLTWENF 1182 (1218)
Q Consensus 1108 d~~G~i~f~eF~~l~~~--~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d--~dG-~i~f~eF 1182 (1218)
+..-.++|.||..+... .+.-+++|+..|+.++|+|+.-+++..|-..-..+....+++.+..+. .+| +++|..|
T Consensus 159 ~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf 238 (694)
T KOG0751|consen 159 IRKRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYF 238 (694)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHH
Confidence 34456788888877764 345578999999999999999999999998866666666766666555 344 3777766
Q ss_pred HH
Q psy13030 1183 IM 1184 (1218)
Q Consensus 1183 v~ 1184 (1218)
..
T Consensus 239 ~a 240 (694)
T KOG0751|consen 239 NA 240 (694)
T ss_pred HH
Confidence 54
No 109
>KOG4666|consensus
Probab=68.95 E-value=5.7 Score=44.99 Aligned_cols=77 Identities=10% Similarity=0.158 Sum_probs=61.9
Q ss_pred CCCcccccccHHHHHH--HhHHHHHHHHhccCCCCCcCCHhhHHHHHHhc-CCCCCHHHHHHHHHHhC--CCCCcCHHHH
Q psy13030 1108 NISGRLNLLDIPLLMH--MLQFWRIAFQKFEKGARSRLSSYSLRPLLWEA-GSTVSNKVLECLVLRFT--KNKVLTWENF 1182 (1218)
Q Consensus 1108 d~~G~i~f~eF~~l~~--~~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~l-G~~ls~~ei~~li~~~d--~dG~i~f~eF 1182 (1218)
.++++|.-.||..-.. .-..++..|.+||.+++|.++..|-..+|.-+ |-..+.+.|+--+++|+ .||.+.=.+|
T Consensus 239 ~kg~~igi~efa~~l~vpvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~l 318 (412)
T KOG4666|consen 239 AKGPDIGIVEFAVNLRVPVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHIL 318 (412)
T ss_pred ccCCCcceeEeeeeeecchhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHH
Confidence 4567777777754322 12567789999999999999999998888765 88999999999999999 7998888777
Q ss_pred HH
Q psy13030 1183 IM 1184 (1218)
Q Consensus 1183 v~ 1184 (1218)
--
T Consensus 319 s~ 320 (412)
T KOG4666|consen 319 SL 320 (412)
T ss_pred HH
Confidence 44
No 110
>KOG4251|consensus
Probab=68.19 E-value=2.9 Score=45.18 Aligned_cols=58 Identities=7% Similarity=0.212 Sum_probs=30.9
Q ss_pred HHHHHHHHhccCCCCCcCCHhhHHHHHH-hcCC--CCCHHHHHHHHHHhC--CCCCcCHHHHH
Q psy13030 1126 QFWRIAFQKFEKGARSRLSSYSLRPLLW-EAGS--TVSNKVLECLVLRFT--KNKVLTWENFI 1183 (1218)
Q Consensus 1126 ~~~~~~F~~fD~d~~G~I~~~EL~~aL~-~lG~--~ls~~ei~~li~~~d--~dG~i~f~eFv 1183 (1218)
+.+..+|...|.+-+|+|++.||+.-++ ++-. .-+.++-+.-++.+| +||.|+++||.
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEyk 163 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYK 163 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhh
Confidence 4455666666666667777766655432 2221 112233333444455 56667776664
No 111
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=67.67 E-value=7.3 Score=42.25 Aligned_cols=83 Identities=16% Similarity=0.299 Sum_probs=54.1
Q ss_pred HHHHHhhcCCCCeEEEecccchhHH------H-----HHhhhcCccccceeeeeeeEEEcCCCCcccEEEEECCCCCCcc
Q psy13030 314 FQVLNSAVPRSSLLISSIKLEKEQK------R-----QLRLRNGLITQHAYSVTGLARVRGPLGETPLVRLRNPWARGEW 382 (1218)
Q Consensus 314 ~~~l~~~~~~g~l~~~~~~~~~~~~------~-----~~~~~~GLv~~HaYsV~~v~~v~~~~~~~~LvrLrNPWG~~eW 382 (1218)
.+.|++++..+.+++++........ . ..........+||-.|++...-.. .......+||-||.
T Consensus 125 ~~~ik~aL~~~gPv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~ivGy~~~~~--~~~~~~i~~NSwG~--- 199 (223)
T cd02619 125 IEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYV--EGKGAFIVKNSWGT--- 199 (223)
T ss_pred HHHHHHHHHHCCCEEEEEEcccchhcccCccccccccccccCCCccCCeEEEEEeecCCCC--CCCCEEEEEeCCCC---
Confidence 4678888877667666655432110 0 111233445789999999865321 23578999999983
Q ss_pred cCCCCCCCcccCCCCHHHHHHhCCccCCCCeeccchHHHHhhc
Q psy13030 383 TGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHF 425 (1218)
Q Consensus 383 ~G~wsd~s~~W~~~~~~~~~~l~~~~~~dG~FWMs~~Df~~~F 425 (1218)
.|- ++|-|||+++++..++
T Consensus 200 ---------~wg---------------~~Gy~~i~~~~~~~~~ 218 (223)
T cd02619 200 ---------DWG---------------DNGYGRISYEDVYEMT 218 (223)
T ss_pred ---------ccc---------------cCCEEEEehhhhhhhh
Confidence 353 6899999999998544
No 112
>KOG0035|consensus
Probab=67.23 E-value=10 Score=49.07 Aligned_cols=66 Identities=17% Similarity=-0.013 Sum_probs=53.5
Q ss_pred hHHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCH-----HHHHHHHHHhC--CCCCcCHHHHHHHHHHHH
Q psy13030 1125 LQFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSN-----KVLECLVLRFT--KNKVLTWENFIMAMVRLH 1190 (1218)
Q Consensus 1125 ~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~-----~ei~~li~~~d--~dG~i~f~eFv~~~~~l~ 1190 (1218)
..+++..|..||+...|.++..|+..+|..+|.+.-. .++..|+...| ..|.++|.+|...|.+..
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~ 818 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY 818 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh
Confidence 4678899999999999999999999999999998885 34444555555 348899999999777643
No 113
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=65.30 E-value=1.8 Score=39.63 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=52.9
Q ss_pred hHHHHHHHhcCCCCccCHHHHHHHHhhhccCcccccCCCceeeeeeccC----CCCccChHHHHHHHHHHHH
Q psy13030 646 GKSLVAKLLVKYPLEVDVSQFQKILRSHWKENTVVLPDGKSLVAKLLVK----YPLEVDVSQFQKILRSHWK 713 (1218)
Q Consensus 646 ~~~lF~~~ag~~d~ei~a~eLq~~Ln~~~~~~~~~~~~crs~v~~~d~~----~~g~l~~~ef~~l~~~~w~ 713 (1218)
.+.+|.++++. ...+++.+|++.|++.-+......+.|+.++..+..+ ..+.|++..|...|-|..+
T Consensus 2 i~~if~~ys~~-~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~N 72 (83)
T PF09279_consen 2 IEEIFRKYSSD-KEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDEN 72 (83)
T ss_dssp HHHHHHHHCTT-SSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTTC
T ss_pred HHHHHHHHhCC-CCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCcC
Confidence 57899999997 7899999999999988765555777888888866544 3588999999988776533
No 114
>PF14658 EF-hand_9: EF-hand domain
Probab=64.12 E-value=10 Score=33.36 Aligned_cols=54 Identities=11% Similarity=0.180 Sum_probs=46.3
Q ss_pred eeeeeccCCCcccccccHHHHHHHh-------HHHHHHHHhccCCCC-CcCCHhhHHHHHHh
Q psy13030 1101 LIMLRDTNISGRLNLLDIPLLMHML-------QFWRIAFQKFEKGAR-SRLSSYSLRPLLWE 1154 (1218)
Q Consensus 1101 li~~~D~d~~G~i~f~eF~~l~~~~-------~~~~~~F~~fD~d~~-G~I~~~EL~~aL~~ 1154 (1218)
+..++|+++.|.|...+...++... .++++....+|.++. |.|+.+.+..+|+.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4567899999999999998888642 468899999999999 99999999999975
No 115
>KOG1029|consensus
Probab=63.22 E-value=8.7 Score=48.00 Aligned_cols=61 Identities=21% Similarity=0.226 Sum_probs=50.4
Q ss_pred HHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC--CCCCcCHHHHHHHHHH
Q psy13030 1126 QFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT--KNKVLTWENFIMAMVR 1188 (1218)
Q Consensus 1126 ~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d--~dG~i~f~eFv~~~~~ 1188 (1218)
..++..|...|+..+|+|+..--|.+|-.- +|+...+..|.---| +||+++-|||+-.|.-
T Consensus 195 lKY~QlFNa~DktrsG~Lsg~qaR~aL~qS--~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 195 LKYRQLFNALDKTRSGYLSGQQARSALGQS--GLPQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred hHHHHHhhhcccccccccccHHHHHHHHhc--CCchhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 457889999999999999999999999764 567777777765555 8999999999875543
No 116
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=57.79 E-value=3.9 Score=36.33 Aligned_cols=52 Identities=19% Similarity=0.296 Sum_probs=39.3
Q ss_pred hHHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC----CC-----CCcCHHHHHH
Q psy13030 1125 LQFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT----KN-----KVLTWENFIM 1184 (1218)
Q Consensus 1125 ~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d----~d-----G~i~f~eFv~ 1184 (1218)
-+++.++|+.. .++.++|+..|||+.| +.++++-+++++. .+ |.+||..|++
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l-------~pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSL-------TPEQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHc-------CcHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 35788999999 6778999999999996 3334466666666 12 6699999976
No 117
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=56.27 E-value=28 Score=36.14 Aligned_cols=63 Identities=17% Similarity=0.351 Sum_probs=48.6
Q ss_pred HHHHHhc---cCCCCCcCCHhhHHHHHHhcC---CCCCHHHHHHHHHHhC--CCCCcCHHHHHHHHHHHHH
Q psy13030 1129 RIAFQKF---EKGARSRLSSYSLRPLLWEAG---STVSNKVLECLVLRFT--KNKVLTWENFIMAMVRLHL 1191 (1218)
Q Consensus 1129 ~~~F~~f---D~d~~G~I~~~EL~~aL~~lG---~~ls~~ei~~li~~~d--~dG~i~f~eFv~~~~~l~~ 1191 (1218)
+++|..| -+.....|+..-+..+|++.| -+++...++.++.++- ....|+|++|..+|..+-.
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~ 72 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAE 72 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHH
Confidence 4455555 456667899999999999986 4799999999999987 3456999999998776554
No 118
>KOG0040|consensus
Probab=55.29 E-value=29 Score=46.76 Aligned_cols=78 Identities=17% Similarity=0.291 Sum_probs=43.7
Q ss_pred eeeeeeccCCCcccccccHHHHHHH-----h---HHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHh
Q psy13030 1100 SLIMLRDTNISGRLNLLDIPLLMHM-----L---QFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRF 1171 (1218)
Q Consensus 1100 ~li~~~D~d~~G~i~f~eF~~l~~~-----~---~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~ 1171 (1218)
.++..+|++.+|.|+..+|+++|.. | .++..||+..|. +.-+++..|+.. ++|.++.+-.+.++
T Consensus 2300 ~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~-------~ltreqaefc~s~m 2371 (2399)
T KOG0040|consen 2300 EILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQ-------NLTREQAEFCMSKM 2371 (2399)
T ss_pred HHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-CCccccHHHHHh-------cCCHHHHHHHHHHh
Confidence 4555666666777777777666642 1 345566666666 444666665543 33555554444444
Q ss_pred C-----CCC-----CcCHHHHHHH
Q psy13030 1172 T-----KNK-----VLTWENFIMA 1185 (1218)
Q Consensus 1172 d-----~dG-----~i~f~eFv~~ 1185 (1218)
. ..| .++|.+|++.
T Consensus 2372 ~~~~e~~~~~s~q~~l~y~dfv~s 2395 (2399)
T KOG0040|consen 2372 KPYAETSSGRSDQVALDYKDFVNS 2395 (2399)
T ss_pred hhhcccccCCCccccccHHHHHHH
Confidence 3 122 2777777663
No 119
>KOG0169|consensus
Probab=52.36 E-value=19 Score=45.53 Aligned_cols=88 Identities=14% Similarity=0.192 Sum_probs=57.7
Q ss_pred eeeeeeccCCCcccccccHHHHHHHh------HHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC-
Q psy13030 1100 SLIMLRDTNISGRLNLLDIPLLMHML------QFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT- 1172 (1218)
Q Consensus 1100 ~li~~~D~d~~G~i~f~eF~~l~~~~------~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d- 1172 (1218)
++....|++.+|+++|.+=..+...+ ...+..|+..|..++|++...+.++.-..++.+. ++..++.++.
T Consensus 140 ~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~ 216 (746)
T KOG0169|consen 140 SIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSH 216 (746)
T ss_pred HHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHHhC
Confidence 34556677777887777666555432 2334556666777778888888777777777654 6666666666
Q ss_pred CCCCcCHHHHHHHHHHHH
Q psy13030 1173 KNKVLTWENFIMAMVRLH 1190 (1218)
Q Consensus 1173 ~dG~i~f~eFv~~~~~l~ 1190 (1218)
+.+.++.++.++.+...+
T Consensus 217 ~~~~ls~~~L~~Fl~~~q 234 (746)
T KOG0169|consen 217 GKEYLSTDDLLRFLEEEQ 234 (746)
T ss_pred CCCccCHHHHHHHHHHhc
Confidence 566677777776555543
No 120
>KOG0169|consensus
Probab=50.79 E-value=33 Score=43.56 Aligned_cols=63 Identities=19% Similarity=0.135 Sum_probs=50.2
Q ss_pred HHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC--CCCCcCHHHHHHHHHHHH
Q psy13030 1128 WRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT--KNKVLTWENFIMAMVRLH 1190 (1218)
Q Consensus 1128 ~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d--~dG~i~f~eFv~~~~~l~ 1190 (1218)
+..+|+..|++++|.++..|..++++.+...++..-+..++++.+ .++++..++|++....+.
T Consensus 138 i~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~ 202 (746)
T KOG0169|consen 138 IHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELT 202 (746)
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhc
Confidence 356788888888888888888888888888888888888888888 678888888877655543
No 121
>KOG1955|consensus
Probab=43.71 E-value=45 Score=40.00 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=51.8
Q ss_pred hHHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC--CCCCcCHHHHHHHH
Q psy13030 1125 LQFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT--KNKVLTWENFIMAM 1186 (1218)
Q Consensus 1125 ~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d--~dG~i~f~eFv~~~ 1186 (1218)
.+.+..-|+..-.|-+|+|+..-.++.+.+ -+|+-+|+..|..-.| .||.++++||...+
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtK--Sklpi~ELshIWeLsD~d~DGALtL~EFcAAf 291 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTK--SKLPIEELSHIWELSDVDRDGALTLSEFCAAF 291 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhh--ccCchHHHHHHHhhcccCccccccHHHHHhhH
Confidence 455667899999999999999999999877 5788899999988888 89999999997743
No 122
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=41.22 E-value=9.4 Score=37.44 Aligned_cols=49 Identities=18% Similarity=0.155 Sum_probs=32.1
Q ss_pred eeeeccCCCcccccccHHHHHHHh---HH-HHHHHHhccCCCCCcCCHhhHHH
Q psy13030 1102 IMLRDTNISGRLNLLDIPLLMHML---QF-WRIAFQKFEKGARSRLSSYSLRP 1150 (1218)
Q Consensus 1102 i~~~D~d~~G~i~f~eF~~l~~~~---~~-~~~~F~~fD~d~~G~I~~~EL~~ 1150 (1218)
...+|.+++|.|+-.|...+-..+ +. .+..|+..|.|+||.|+..|...
T Consensus 60 F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 60 FCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred HhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 455799999999999987665422 22 45678888999999999998753
No 123
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=36.34 E-value=42 Score=27.12 Aligned_cols=30 Identities=7% Similarity=0.036 Sum_probs=24.7
Q ss_pred hhHHHHHHHh---cCCCCccCHHHHHHHHhhhcc
Q psy13030 645 DGKSLVAKLL---VKYPLEVDVSQFQKILRSHWK 675 (1218)
Q Consensus 645 ~~~~lF~~~a---g~~d~ei~a~eLq~~Ln~~~~ 675 (1218)
..-.+|.++| |+ ...++-.||+++|.+-++
T Consensus 7 ~iI~vFhkYa~~~Gd-~~~Lsk~Elk~Ll~~Elp 39 (44)
T PF01023_consen 7 TIIDVFHKYAGKEGD-KDTLSKKELKELLEKELP 39 (44)
T ss_dssp HHHHHHHHHHTSSSS-TTSEEHHHHHHHHHHHST
T ss_pred HHHHHHHHHhccCCC-CCeEcHHHHHHHHHHHHH
Confidence 3567899999 55 568999999999998764
No 124
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=35.53 E-value=31 Score=36.27 Aligned_cols=44 Identities=7% Similarity=0.105 Sum_probs=34.9
Q ss_pred HHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhC
Q psy13030 1129 RIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT 1172 (1218)
Q Consensus 1129 ~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d 1172 (1218)
|+=-.-||+|+||.|.+.|--..+++||+++--..+..++-...
T Consensus 10 QqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~ 53 (174)
T PF05042_consen 10 QQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGA 53 (174)
T ss_pred hhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcc
Confidence 33334589999999999999999999999988777666655444
No 125
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=32.57 E-value=65 Score=26.25 Aligned_cols=41 Identities=15% Similarity=0.057 Sum_probs=29.9
Q ss_pred HhhHHHHHHhcCCCCCHHHHHHHHHHhCCCCCcCHHHHHHHHH
Q psy13030 1145 SYSLRPLLWEAGSTVSNKVLECLVLRFTKNKVLTWENFIMAMV 1187 (1218)
Q Consensus 1145 ~~EL~~aL~~lG~~ls~~ei~~li~~~d~dG~i~f~eFv~~~~ 1187 (1218)
.+|+..||..||| +..+++..+.+......++.++.++..+
T Consensus 3 ~~d~~~AL~~LGy--~~~e~~~av~~~~~~~~~~~e~~ik~aL 43 (47)
T PF07499_consen 3 LEDALEALISLGY--SKAEAQKAVSKLLEKPGMDVEELIKQAL 43 (47)
T ss_dssp HHHHHHHHHHTTS---HHHHHHHHHHHHHSTTS-HHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 3688999999998 7888999988886434467777776443
No 126
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=30.54 E-value=87 Score=33.03 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=35.1
Q ss_pred HHHHHhhcCCCCeEEEecccchhHHHHHhhhcCccccceeeeeeeEEEcCCCCcccEEEEECCC
Q psy13030 314 FQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAYSVTGLARVRGPLGETPLVRLRNPW 377 (1218)
Q Consensus 314 ~~~l~~~~~~g~l~~~~~~~~~~~~~~~~~~~GLv~~HaYsV~~v~~v~~~~~~~~LvrLrNPW 377 (1218)
++.+++..+.+..+.......+ ..+|...|||-+|.+-..... +.+.+-+.|||
T Consensus 91 ~~eV~~~~~~nk~i~i~~~~v~-------~~~~~~~gHAlavvGya~~~~---g~~~y~~WNPW 144 (175)
T PF05543_consen 91 FDEVKKLIDNNKGIAILADRVE-------QTNGPHAGHALAVVGYAKPNN---GQKTYYFWNPW 144 (175)
T ss_dssp HHHHHHHHHTT-EEEEEEEETT-------SCTTB--EEEEEEEEEEEETT---SEEEEEEE-TT
T ss_pred HHHHHHHHHcCCCeEEEecccc-------cCCCCccceeEEEEeeeecCC---CCeEEEEeCCc
Confidence 6777777766655544332111 337889999999999977664 47789999999
No 127
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=28.06 E-value=71 Score=34.35 Aligned_cols=75 Identities=13% Similarity=0.205 Sum_probs=46.4
Q ss_pred HHHHhhcCCCCeEEEecccchhHH------HHHhhhcCccccceeeeeeeEEEcCCCCcccEEEEECCCCCCcccCCCCC
Q psy13030 315 QVLNSAVPRSSLLISSIKLEKEQK------RQLRLRNGLITQHAYSVTGLARVRGPLGETPLVRLRNPWARGEWTGPWSE 388 (1218)
Q Consensus 315 ~~l~~~~~~g~l~~~~~~~~~~~~------~~~~~~~GLv~~HaYsV~~v~~v~~~~~~~~LvrLrNPWG~~eW~G~wsd 388 (1218)
+.|++++..+.+++++........ ...........+||=.|++...-. +.....+||-||.
T Consensus 118 ~~ik~~l~~~gPV~~~~~~~~~f~~y~~Giy~~~~~~~~~~~Hav~iVGy~~~~----~~~ywiv~NSWG~--------- 184 (210)
T cd02248 118 EALKAALANYGPVSVAIDASSSFQFYKGGIYSGPCCSNTNLNHAVLLVGYGTEN----GVDYWIVKNSWGT--------- 184 (210)
T ss_pred HHHHHHHhhcCCEEEEEecCcccccCCCCceeCCCCCCCcCCEEEEEEEEeecC----CceEEEEEcCCCC---------
Confidence 556667666666666654321100 000011134467999999987643 3678999999983
Q ss_pred CCcccCCCCHHHHHHhCCccCCCCeeccchHH
Q psy13030 389 RSWEWDGLSERDKELLSIRVSNDGEFWMSFED 420 (1218)
Q Consensus 389 ~s~~W~~~~~~~~~~l~~~~~~dG~FWMs~~D 420 (1218)
.|- ++|-|||+.++
T Consensus 185 ---~WG---------------~~Gy~~i~~~~ 198 (210)
T cd02248 185 ---SWG---------------EKGYIRIARGS 198 (210)
T ss_pred ---ccc---------------cCcEEEEEcCC
Confidence 353 67999999886
No 128
>KOG4347|consensus
Probab=26.54 E-value=47 Score=41.51 Aligned_cols=65 Identities=17% Similarity=0.295 Sum_probs=38.0
Q ss_pred ccchhhhccCCccc-------ccceeeeeeccCCCcccccccHHHHHHH------hHHHHHHHHhccCCCCCcCCHhhH
Q psy13030 1083 LNFSAYLLEKPSLD-------MCKSLIMLRDTNISGRLNLLDIPLLMHM------LQFWRIAFQKFEKGARSRLSSYSL 1148 (1218)
Q Consensus 1083 m~~~df~~~f~sl~-------icr~li~~~D~d~~G~i~f~eF~~l~~~------~~~~~~~F~~fD~d~~G~I~~~EL 1148 (1218)
+.+++|+.-|..+. .-..+..+.|.+++|.|+|.+|+.-... .+.++=.|+++|.+++ ..+.+|+
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 55555555443322 2223445567777777777777654332 2344556777777777 7777776
No 129
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=25.27 E-value=60 Score=38.00 Aligned_cols=52 Identities=21% Similarity=0.414 Sum_probs=36.1
Q ss_pred CccccceeeeeeeEEEcCC----C--CcccEEEEECCCCCCcccCCCCCCCcccCCCCHHHHHHhCCccCCCCeeccchH
Q psy13030 346 GLITQHAYSVTGLARVRGP----L--GETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFE 419 (1218)
Q Consensus 346 GLv~~HaYsV~~v~~v~~~----~--~~~~LvrLrNPWG~~eW~G~wsd~s~~W~~~~~~~~~~l~~~~~~dG~FWMs~~ 419 (1218)
+...|||=.|++....... . .+.=-++|||-||. .|- ++|-|||++.
T Consensus 261 ~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt------------~wG---------------~~GYfwisY~ 313 (372)
T COG4870 261 GENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGT------------NWG---------------ENGYFWISYY 313 (372)
T ss_pred cccccceEEEEeccccccccccccCCCCCceEEEECcccc------------ccc---------------cCceEEEEee
Confidence 3567999999988654321 0 01226899999993 232 6799999999
Q ss_pred HHHhh
Q psy13030 420 DFAKH 424 (1218)
Q Consensus 420 Df~~~ 424 (1218)
+-..-
T Consensus 314 ya~~g 318 (372)
T COG4870 314 YALNG 318 (372)
T ss_pred ecccc
Confidence 87655
No 130
>KOG1707|consensus
Probab=23.78 E-value=68 Score=39.84 Aligned_cols=57 Identities=23% Similarity=0.266 Sum_probs=42.8
Q ss_pred hHHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCC----CHHHHHHHHHHhCCCCCcCHHHHHHH
Q psy13030 1125 LQFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTV----SNKVLECLVLRFTKNKVLTWENFIMA 1185 (1218)
Q Consensus 1125 ~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~l----s~~ei~~li~~~d~dG~i~f~eFv~~ 1185 (1218)
++-++.+|..||.|+||-++..||..+....+... ...+.-... ..|-++|..|+..
T Consensus 314 ~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~~~----~~G~ltl~g~l~~ 374 (625)
T KOG1707|consen 314 YRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTVKN----ERGWLTLNGFLSQ 374 (625)
T ss_pred HHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccceec----ccceeehhhHHHH
Confidence 45678999999999999999999999999986544 222221111 5688999999773
No 131
>KOG3866|consensus
Probab=22.87 E-value=92 Score=35.35 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=32.0
Q ss_pred HHHhccCCCCCcCCHhhHHHHHHh----c-CCCCCHHHH-----------HHHHHHhC--CCCCcCHHHHHHHH
Q psy13030 1131 AFQKFEKGARSRLSSYSLRPLLWE----A-GSTVSNKVL-----------ECLVLRFT--KNKVLTWENFIMAM 1186 (1218)
Q Consensus 1131 ~F~~fD~d~~G~I~~~EL~~aL~~----l-G~~ls~~ei-----------~~li~~~d--~dG~i~f~eFv~~~ 1186 (1218)
.|.++|.+++|+++-.||..+++. + ..+-.++++ +.+|+.+| .|-.|+.+||++.-
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 355666666666666666555331 1 111122222 34567788 57779999998743
No 132
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=22.64 E-value=72 Score=34.36 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=32.7
Q ss_pred CCccCCceeeccEEEEccCCCeeeEEEEeCCCCCCccCCccccccccchhhh
Q psy13030 1038 GLITQHAYSVTGLARVRGPLGETPLVRLRNPWARGEWTGPWSEFFLNFSAYL 1089 (1218)
Q Consensus 1038 GLv~~HaYsVl~~~~~~~~~~~~rlv~LrNPWg~~ew~G~ws~fwm~~~df~ 1089 (1218)
....+||-+|+++..-.. .......+||-||.. | |.---+||+++++.
T Consensus 168 ~~~~~Hav~ivGy~~~~~--~~~~~~i~~NSwG~~-w-g~~Gy~~i~~~~~~ 215 (223)
T cd02619 168 GDLGGHAVVIVGYDDNYV--EGKGAFIVKNSWGTD-W-GDNGYGRISYEDVY 215 (223)
T ss_pred CccCCeEEEEEeecCCCC--CCCCEEEEEeCCCCc-c-ccCCEEEEehhhhh
Confidence 345789999999886331 125789999999952 3 22224778887766
No 133
>KOG3449|consensus
Probab=22.18 E-value=1.8e+02 Score=28.33 Aligned_cols=54 Identities=13% Similarity=0.239 Sum_probs=46.5
Q ss_pred HHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHHHhCCCCCcCHHHHHH
Q psy13030 1128 WRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFTKNKVLTWENFIM 1184 (1218)
Q Consensus 1128 ~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~~~d~dG~i~f~eFv~ 1184 (1218)
+-.+|-+++.-++-..+..+++++|...|..+.++-++.+++++. |+ +.+|.|.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~--GK-~i~ElIA 56 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK--GK-DIEELIA 56 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc--CC-CHHHHHH
Confidence 456788899999999999999999999999999999999999986 33 6667765
No 134
>KOG0046|consensus
Probab=21.92 E-value=64 Score=39.31 Aligned_cols=66 Identities=17% Similarity=0.079 Sum_probs=54.3
Q ss_pred hhhHHHHHHHhcCCCCccCHHHHHHHHhhhcc-CcccccCCCceeeeeeccCCCCccChHHHHHHHHH
Q psy13030 644 PDGKSLVAKLLVKYPLEVDVSQFQKILRSHWK-ENTVVLPDGKSLVAKLLVKYPLEVDVSQFQKILRS 710 (1218)
Q Consensus 644 ~~~~~lF~~~ag~~d~ei~a~eLq~~Ln~~~~-~~~~~~~~crs~v~~~d~~~~g~l~~~ef~~l~~~ 710 (1218)
.+.+.-|.++-++ .+.|+..||..++.++-. ...+.-+.-+.+++-.+.|.+|+++|+||-.+|-+
T Consensus 19 ~~l~~kF~~~d~~-~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 19 RELKEKFNKLDDQ-KGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHhhcCC-CCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 5567788888888 899999999999998752 23455566688899999999999999999998554
No 135
>PLN02222 phosphoinositide phospholipase C 2
Probab=21.43 E-value=2e+02 Score=36.39 Aligned_cols=62 Identities=10% Similarity=0.190 Sum_probs=49.6
Q ss_pred hHHHHHHHHhccCCCCCcCCHhhHHHHHHhc-CC-CCCHHHHHHHHHHhC---CCCCcCHHHHHHHHHH
Q psy13030 1125 LQFWRIAFQKFEKGARSRLSSYSLRPLLWEA-GS-TVSNKVLECLVLRFT---KNKVLTWENFIMAMVR 1188 (1218)
Q Consensus 1125 ~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~l-G~-~ls~~ei~~li~~~d---~dG~i~f~eFv~~~~~ 1188 (1218)
..++.++|..+-. ++.++.++|+..|++. |. ..+.+.+..||.++. ..+.++++.|.+.|+.
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 3578888988853 4799999999999987 43 457888999999876 4677999999886654
No 136
>KOG3555|consensus
Probab=21.28 E-value=51 Score=37.98 Aligned_cols=56 Identities=11% Similarity=0.004 Sum_probs=42.4
Q ss_pred eeeeeccCCCcccccccHHHHHHH--hHHHHHHHHhccCCCCCcCCHhhHHHHHHhcC
Q psy13030 1101 LIMLRDTNISGRLNLLDIPLLMHM--LQFWRIAFQKFEKGARSRLSSYSLRPLLWEAG 1156 (1218)
Q Consensus 1101 li~~~D~d~~G~i~f~eF~~l~~~--~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG 1156 (1218)
|.+..|++-+|.|+..|...+... ..=++..|...|..++|.|+.+|--..+..-+
T Consensus 255 MFnklD~N~Dl~Ld~sEl~~I~ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 255 MFNKLDTNYDLLLDQSELRAIELDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hhhccccccccccCHHHhhhhhccCchhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 456678888999999988777642 22346778889999999999988777766655
No 137
>KOG4578|consensus
Probab=21.21 E-value=83 Score=36.08 Aligned_cols=53 Identities=13% Similarity=0.040 Sum_probs=29.8
Q ss_pred eeeeeccCCCcccccc---cHHHHHHH---hHHH-HHHHHhccCCCCCcCCHhhHHHHHH
Q psy13030 1101 LIMLRDTNISGRLNLL---DIPLLMHM---LQFW-RIAFQKFEKGARSRLSSYSLRPLLW 1153 (1218)
Q Consensus 1101 li~~~D~d~~G~i~f~---eF~~l~~~---~~~~-~~~F~~fD~d~~G~I~~~EL~~aL~ 1153 (1218)
....+|++.++.|+-. -|..+... .+++ ++.|+..|.++|-+|+.+|++..|.
T Consensus 338 ~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 338 YFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 3445566666665533 34444332 2222 3556667777777777777776664
No 138
>KOG2871|consensus
Probab=20.41 E-value=93 Score=36.36 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=43.7
Q ss_pred hHHHHHHHHhccCCCCCcCCHhhHHHHHHhcCCCCCHHHHHHHHH-HhC--CCCCcCHHHHHH
Q psy13030 1125 LQFWRIAFQKFEKGARSRLSSYSLRPLLWEAGSTVSNKVLECLVL-RFT--KNKVLTWENFIM 1184 (1218)
Q Consensus 1125 ~~~~~~~F~~fD~d~~G~I~~~EL~~aL~~lG~~ls~~ei~~li~-~~d--~dG~i~f~eFv~ 1184 (1218)
-.+.+.+|+.+|..+.|+|+..-++.+|+++.-.+++.+.-.+++ ..| .-|.|-.++|+.
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLG 370 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccc
Confidence 467899999999999999999999999999986666655444433 344 235455555544
No 139
>KOG4578|consensus
Probab=20.24 E-value=68 Score=36.77 Aligned_cols=58 Identities=10% Similarity=0.145 Sum_probs=42.7
Q ss_pred HHhccCCCCCcCCHhhHHHHHHhcC-CCCCHHHHHHHHHHhC--CCCCcCHHHHHHHHHHH
Q psy13030 1132 FQKFEKGARSRLSSYSLRPLLWEAG-STVSNKVLECLVLRFT--KNKVLTWENFIMAMVRL 1189 (1218)
Q Consensus 1132 F~~fD~d~~G~I~~~EL~~aL~~lG-~~ls~~ei~~li~~~d--~dG~i~f~eFv~~~~~l 1189 (1218)
|...|+++++.|+..|.+..=+=+- -.-...-...|++-.| +|-.|+|+|.+.++..-
T Consensus 339 F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 339 FNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 9999999999999999776533221 1223445566777777 78899999999987653
Done!