RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13030
(1218 letters)
>gnl|CDD|128526 smart00230, CysPc, Calpain-like thiol protease family.
Calpain-like thiol protease family (peptidase family
C2). Calcium activated neutral protease (large subunit).
Length = 318
Score = 318 bits (816), Expect = 3e-99
Identities = 149/385 (38%), Positives = 202/385 (52%), Gaps = 71/385 (18%)
Query: 59 YHAIKRACREKGILYEDPDFPPGPKLLFRNKKAPVQSLVWMRPHEMCQRPKFYSEDSLQG 118
Y A+++ C+E G L+EDP FP LF + + +VW +RP E+
Sbjct: 1 YEALRQYCKESGTLFEDPLFPANNGSLF-FSQRQRKFVVW-------KRPHEIFENPP-- 50
Query: 119 RFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRPKFYSEDSLQG 178
+ + S
Sbjct: 51 ------------FIVGGAS----------------------------------------- 57
Query: 179 RFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRFRFWHFGEWKE 238
R D G LGD W LAA++SLTL K LDRVIP +Q F NY G+F FRFW FG+W +
Sbjct: 58 RTDICQGVLGDCWLLAALASLTLREKLLDRVIPHDQEFSE--NYAGIFHFRFWRFGKWVD 115
Query: 239 ILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGG 298
+++DDRLPT+ G LV++HS + EFW+ALLEKAYAK GCYE L GGSTT AL+DLTGG
Sbjct: 116 VVIDDRLPTYNGELVFMHSNSRNEFWSALLEKAYAKLNGCYEAL-KGGSTTEALEDLTGG 174
Query: 299 IVQSFALTN--QDRYLTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAYSVT 356
+ +S L +D F+ L A R SL+ SI + + + GL+ HAYSVT
Sbjct: 175 VAESIDLKEASKDPDNLFEDLFKAFERGSLMGCSIGAGTAVEEEEQKDCGLVKGHAYSVT 234
Query: 357 GLARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWM 416
+ V+G L+RLRNPW + EW GPWS+ S EW +S +K+ L + +DGEFWM
Sbjct: 235 DVREVQG--RRQELLRLRNPWGQVEWNGPWSDDSPEWRSVSASEKKNLGLTFDDDGEFWM 292
Query: 417 SFEDFAKHFTHLDLVHVGPDDWMAE 441
SFEDF +HF +++ ++ P D + E
Sbjct: 293 SFEDFLRHFDKVEICNLNP-DSLEE 316
Score = 173 bits (440), Expect = 9e-48
Identities = 75/155 (48%), Positives = 99/155 (63%), Gaps = 5/155 (3%)
Query: 928 WKEILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDL 987
W ++++DDRLPT+ G LV++HS + EFW+ALLEKAYAK GCYE L GGSTT AL+DL
Sbjct: 113 WVDVVIDDRLPTYNGELVFMHSNSRNEFWSALLEKAYAKLNGCYEAL-KGGSTTEALEDL 171
Query: 988 TGGIVQSFALTN--QDRYLTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAY 1045
TGG+ +S L +D F+ L A R SL+ SI + + + GL+ HAY
Sbjct: 172 TGGVAESIDLKEASKDPDNLFEDLFKAFERGSLMGCSIGAGTAVEEEEQKDCGLVKGHAY 231
Query: 1046 SVTGLARVRGPLGETPLVRLRNPWARGEWTGPWSE 1080
SVT + V+G L+RLRNPW + EW GPWS+
Sbjct: 232 SVTDVREVQG--RRQELLRLRNPWGQVEWNGPWSD 264
Score = 108 bits (272), Expect = 2e-25
Identities = 40/86 (46%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 749 HAYSVTGLARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSN 808
HAYSVT + V+G L+RLRNPW + EW GPWS+ S EW +S +K+ L + +
Sbjct: 229 HAYSVTDVREVQG--RRQELLRLRNPWGQVEWNGPWSDDSPEWRSVSASEKKNLGLTFDD 286
Query: 809 DGEFWMSFEDFAKHFTHLDLVHVQMT 834
DGEFWMSFEDF +HF +++ ++
Sbjct: 287 DGEFWMSFEDFLRHFDKVEICNLNPD 312
Score = 49.2 bits (118), Expect = 7e-06
Identities = 31/70 (44%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 859 VTMLEAARISFYGCYENLTHGGSTTRALQDLTGGIVQSFALTN--QDRYLTFQVLNSAVP 916
+LE A GCYE L GGSTT AL+DLTGG+ +S L +D F+ L A
Sbjct: 142 SALLEKAYAKLNGCYEAL-KGGSTTEALEDLTGGVAESIDLKEASKDPDNLFEDLFKAFE 200
Query: 917 RSSLLISSIK 926
R SL+ SI
Sbjct: 201 RGSLMGCSIG 210
>gnl|CDD|238004 cd00044, CysPc, Calpains, domains IIa, IIb; calcium-dependent
cytoplasmic cysteine proteinases, papain-like. Functions
in cytoskeletal remodeling processes, cell
differentiation, apoptosis and signal transduction.
Length = 315
Score = 297 bits (762), Expect = 1e-91
Identities = 136/380 (35%), Positives = 181/380 (47%), Gaps = 75/380 (19%)
Query: 62 IKRACREKGILYEDPDFPPGPKLLFRNK----KAPVQSLVWMRPHEMCQRPKFYSEDSLQ 117
+ + C G+L+EDPDFPP L + P + + W RP D
Sbjct: 2 LLQICLLSGVLFEDPDFPPNDSSLGFDDSLSNGQPKKVIEWK-------RPSEIFADD-- 52
Query: 118 GRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRPKFYSEDSLQ 177
G P+ + +
Sbjct: 53 ----------------------------------------------GNSNPRLFVNGAS- 65
Query: 178 GRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRFRFWHFGEWK 237
D G LGD WFLAA+++L P+ L RVIPP+QSF+ NY G++ FRFW GEW
Sbjct: 66 -PSDVCQGILGDCWFLAALAALAERPELLKRVIPPDQSFEE--NYAGIYHFRFWKNGEWV 122
Query: 238 EILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTG 297
E+++DDRLPT G L+++HS + E W ALLEKAYAK +G YE L GG+T AL+DLTG
Sbjct: 123 EVVIDDRLPTSNGGLLFMHSRDRNELWVALLEKAYAKLHGSYEAL-VGGNTAEALEDLTG 181
Query: 298 GIVQSFALTN----QDRYLTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAY 353
G + L + F +L S + SL+ S + + R NGL+ HAY
Sbjct: 182 GPTERIDLKSADASSGDNDLFALLLSFLQGGSLIGCST--GSRSEEEARTANGLVKGHAY 239
Query: 354 SVTGLARVRGPLGETPLVRLRNPWARGEWTGPWSER-SWEWDGLSERDKELLSIRVSNDG 412
SV + V L+RLRNPW GEW G WS+ S W +ER K LLS +DG
Sbjct: 240 SVLDVREV--QEEGLRLLRLRNPWGVGEWWGGWSDDSSEWWVIDAERKKLLLSG--KDDG 295
Query: 413 EFWMSFEDFAKHFTHLDLVH 432
EFWMSFEDF ++F L + +
Sbjct: 296 EFWMSFEDFLRNFDGLYVCN 315
Score = 174 bits (443), Expect = 4e-48
Identities = 67/157 (42%), Positives = 88/157 (56%), Gaps = 9/157 (5%)
Query: 928 WKEILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDL 987
W E+++DDRLPT G L+++HS + E W ALLEKAYAK +G YE L GG+T AL+DL
Sbjct: 121 WVEVVIDDRLPTSNGGLLFMHSRDRNELWVALLEKAYAKLHGSYEAL-VGGNTAEALEDL 179
Query: 988 TGGIVQSFALTN----QDRYLTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQH 1043
TGG + L + F +L S + SL+ S + + R NGL+ H
Sbjct: 180 TGGPTERIDLKSADASSGDNDLFALLLSFLQGGSLIGCST--GSRSEEEARTANGLVKGH 237
Query: 1044 AYSVTGLARVRGPLGETPLVRLRNPWARGEWTGPWSE 1080
AYSV + V L+RLRNPW GEW G WS+
Sbjct: 238 AYSVLDVREV--QEEGLRLLRLRNPWGVGEWWGGWSD 272
Score = 90.9 bits (226), Expect = 1e-19
Identities = 40/83 (48%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 749 HAYSVTGLARVRGPLGETPLVRLRNPWARGEWTGPWSER-SWEWDGLSERDKELLSIRVS 807
HAYSV + V L+RLRNPW GEW G WS+ S W +ER K LLS
Sbjct: 237 HAYSVLDVREV--QEEGLRLLRLRNPWGVGEWWGGWSDDSSEWWVIDAERKKLLLSG--K 292
Query: 808 NDGEFWMSFEDFAKHFTHLDLVH 830
+DGEFWMSFEDF ++F L + +
Sbjct: 293 DDGEFWMSFEDFLRNFDGLYVCN 315
Score = 51.6 bits (124), Expect = 1e-06
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 14/94 (14%)
Query: 837 RSLRYNQ-NNLGELSWLAEDGGPVTMLEAARISFYGCYENLTHGGSTTRALQDLTGGIVQ 895
L + + EL W+A +LE A +G YE L GG+T AL+DLTGG +
Sbjct: 135 GGLLFMHSRDRNEL-WVA-------LLEKAYAKLHGSYEAL-VGGNTAEALEDLTGGPTE 185
Query: 896 SFALTN----QDRYLTFQVLNSAVPRSSLLISSI 925
L + F +L S + SL+ S
Sbjct: 186 RIDLKSADASSGDNDLFALLLSFLQGGSLIGCST 219
>gnl|CDD|216041 pfam00648, Peptidase_C2, Calpain family cysteine protease.
Length = 302
Score = 293 bits (751), Expect = 2e-90
Identities = 138/363 (38%), Positives = 188/363 (51%), Gaps = 62/363 (17%)
Query: 72 LYEDPDFPPGPKLLFRNKKAPVQSLVWMRPHEMCQRPKFYSEDSLQGRFDFEAGRLGDAW 131
L+ DP FP PK L Y + + G W
Sbjct: 1 LFVDPSFPADPKSL------------------------GYKPL-----GPYSSKTRGIEW 31
Query: 132 FLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRPKFYSEDSLQGRFDFEAGRLGDAW 191
R P E +P +F + R D G LGD W
Sbjct: 32 ---------------KR--PHEICENP----------QFIIGGA--TRTDICQGALGDCW 62
Query: 192 FLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRFRFWHFGEWKEILVDDRLPTFQGR 251
LAAI+SLTL + L RV+P +QSF NY G+F F+FW +GEW +++VDDRLPT G
Sbjct: 63 LLAAIASLTLNEELLFRVVPHDQSF--QENYAGIFHFQFWQYGEWVDVVVDDRLPTKDGE 120
Query: 252 LVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQDRY 311
LV++HS EFW+ALLEKAYAK +GCYE L+ GGSTT A++D TGG+ + + L
Sbjct: 121 LVFVHSAERNEFWSALLEKAYAKLHGCYEALS-GGSTTEAMEDFTGGVAEWYELKQAPSD 179
Query: 312 LT-FQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAYSVTGLARVRGPLGETPL 370
L F+++ A+ R SL+ SI + + R GL+ HAYSVTG+ V + L
Sbjct: 180 LNLFKIIAKALERGSLMGCSIDITSPVDMEARTFKGLVKGHAYSVTGVKEVNYRGEKQKL 239
Query: 371 VRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHFTHLDL 430
+RLRNPW + EWTG WS+ S EW + ++ L ++ DGEFWMSFEDF +HF+ L++
Sbjct: 240 IRLRNPWGQVEWTGAWSDGSPEWRFIDPDERARLQLQFEEDGEFWMSFEDFLRHFSRLEI 299
Query: 431 VHV 433
++
Sbjct: 300 CNL 302
Score = 166 bits (423), Expect = 1e-45
Identities = 73/154 (47%), Positives = 99/154 (64%), Gaps = 2/154 (1%)
Query: 928 WKEILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDL 987
W +++VDDRLPT G LV++HS EFW+ALLEKAYAK +GCYE L+ GGSTT A++D
Sbjct: 105 WVDVVVDDRLPTKDGELVFVHSAERNEFWSALLEKAYAKLHGCYEALS-GGSTTEAMEDF 163
Query: 988 TGGIVQSFALTNQDRYLT-FQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAYS 1046
TGG+ + + L L F+++ A+ R SL+ SI + + R GL+ HAYS
Sbjct: 164 TGGVAEWYELKQAPSDLNLFKIIAKALERGSLMGCSIDITSPVDMEARTFKGLVKGHAYS 223
Query: 1047 VTGLARVRGPLGETPLVRLRNPWARGEWTGPWSE 1080
VTG+ V + L+RLRNPW + EWTG WS+
Sbjct: 224 VTGVKEVNYRGEKQKLIRLRNPWGQVEWTGAWSD 257
Score = 109 bits (275), Expect = 4e-26
Identities = 39/83 (46%), Positives = 55/83 (66%)
Query: 749 HAYSVTGLARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSN 808
HAYSVTG+ V + L+RLRNPW + EWTG WS+ S EW + ++ L ++
Sbjct: 220 HAYSVTGVKEVNYRGEKQKLIRLRNPWGQVEWTGAWSDGSPEWRFIDPDERARLQLQFEE 279
Query: 809 DGEFWMSFEDFAKHFTHLDLVHV 831
DGEFWMSFEDF +HF+ L++ ++
Sbjct: 280 DGEFWMSFEDFLRHFSRLEICNL 302
Score = 47.8 bits (114), Expect = 2e-05
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 859 VTMLEAARISFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQDRYLT-FQVLNSAVPR 917
+LE A +GCYE L+ GGSTT A++D TGG+ + + L L F+++ A+ R
Sbjct: 134 SALLEKAYAKLHGCYEALS-GGSTTEAMEDFTGGVAEWYELKQAPSDLNLFKIIAKALER 192
Query: 918 SSLLISSI 925
SL+ SI
Sbjct: 193 GSLMGCSI 200
>gnl|CDD|216279 pfam01067, Calpain_III, Calpain large subunit, domain III. The
function of the domain III and I are currently unknown.
Domain II is a cysteine protease and domain IV is a
calcium binding domain. Calpains are believed to
participate in intracellular signaling pathways mediated
by calcium ions.
Length = 142
Score = 120 bits (302), Expect = 2e-31
Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 3/144 (2%)
Query: 449 PWRAVLARRRWRTGYNAGGGPNFVETTSVNPQFHIQIPRSSNNKCHVVVSVTQYYETQVD 508
W+ + W G AGG NF +T NPQ+ + + ++ C V+V++ Q +
Sbjct: 1 KWKVTVYEGSWVRGSTAGGCRNFPDTFWTNPQYRLSLTEPDDDDCSVLVALMQKNRRKKR 60
Query: 509 EKQKRTLYAIGFAVYEISSSMTRLTPQFVAHTKPL-DVTNHSVAREVVTFFTLPPGDFIV 567
++ L IGFA+Y++ L +F + + + + + REV F LPPG +++
Sbjct: 61 KEGADNLT-IGFAIYKVDPQK-ELPRKFFSQNRSIARSSTYINLREVTERFRLPPGTYVI 118
Query: 568 VPQTNVPDCDGKFLLRIFTDEQRD 591
VP T P +G+FLLR+F+++ D
Sbjct: 119 VPSTFEPGQEGEFLLRVFSEKPID 142
>gnl|CDD|238132 cd00214, Calpain_III, Calpain, subdomain III. Calpains are
calcium-activated cytoplasmic cysteine proteinases,
participate in cytoskeletal remodeling processes, cell
differentiation, apoptosis and signal transduction.
Catalytic domain and the two calmodulin-like domains are
separated by C2-like domain III. Domain III plays an
important role in calcium-induced activation of calpain
involving electrostatic interactions with subdomain II.
Proposed to mediate calpain's interaction with
phospholipids and translocation to cytoplasmic/nuclear
membranes. CD includes subdomain III of typical and
atypical calpains.
Length = 150
Score = 101 bits (254), Expect = 7e-25
Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 4/149 (2%)
Query: 448 QPWRAVLARRRWRTGYNAGGGPNFVETTSVNPQF--HIQIPRSSNNKCHVVVSVTQYYET 505
+ W WR G AGG N +T NPQF + P KC V++++ Q
Sbjct: 1 RKWHTKSFNGEWRRGQTAGGCRNNPDTFWTNPQFRIRVPEPDDDEGKCTVLIALMQKN-R 59
Query: 506 QVDEKQKRTLYAIGFAVYEISSSMTRLTPQFVAHTKPLDVTNHSV-AREVVTFFTLPPGD 564
+ K+ L IGF VY++ L F H P ++ + REV F LPPG+
Sbjct: 60 RHLRKKGLDLLTIGFHVYKVPGENRHLRRDFFLHKAPRARSSTFINTREVSLRFRLPPGE 119
Query: 565 FIVVPQTNVPDCDGKFLLRIFTDEQRDFI 593
+++VP T P +G+FLLR+F+++
Sbjct: 120 YVIVPSTFEPGEEGEFLLRVFSEKSIKSS 148
>gnl|CDD|214786 smart00720, calpain_III, calpain_III domain.
Length = 143
Score = 99.0 bits (247), Expect = 4e-24
Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 3/139 (2%)
Query: 450 WRAVLARRRWRTGYNAGGGPNFVETTSVNPQFHIQIPRSSNNKCHVVVSVTQYYETQVDE 509
W + W G AGG N+ T NPQF I + ++ C V++++ Q ++
Sbjct: 1 WHTKSVQGSWTRGQTAGGCRNYPATFWTNPQFRITLEEPDDDDCTVLIALMQKNRRRLRR 60
Query: 510 KQKRTLYAIGFAVYEISSSMTRLTPQFVAHTKPLDVTNHSV-AREVVTFFTLPPGDFIVV 568
K IGFAVY++ L F P + + REV F LPPG++++V
Sbjct: 61 KGAD-FLTIGFAVYKVPK-ELHLRRDFFLSNAPRASSGDYINGREVSERFRLPPGEYVIV 118
Query: 569 PQTNVPDCDGKFLLRIFTD 587
P T P+ +G FLLR+F++
Sbjct: 119 PSTFEPNQEGDFLLRVFSE 137
>gnl|CDD|222580 pfam14180, DOCK_C2, GTP-GDP exchange factor. Dock proteins are
atypical GTP-GDP exchange factors for the small GTPases
Pac and Cdc42, and are implicated in biological roles
related to cell-migration and phagocytosis.
Length = 178
Score = 35.0 bits (81), Expect = 0.096
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 14/81 (17%)
Query: 463 YNAGGGPNFV--ETTSV-----NPQFH----IQIPRSSNNKCHVVVSVTQYYETQVDEKQ 511
YN GP+ V +SV NPQF+ +Q+P H++ + Y V +K+
Sbjct: 48 YNRSSGPSLVSSAFSSVSYHNKNPQFNDEFKLQLPLDLTPGHHLLFTF---YHVSVKKKK 104
Query: 512 KRTLYAIGFAVYEISSSMTRL 532
K+ IG+A + +
Sbjct: 105 KKVETPIGYAFLPLLDKGGFI 125
>gnl|CDD|185269 PRK15371, PRK15371, effector protein YopJ; Provisional.
Length = 287
Score = 35.8 bits (83), Expect = 0.10
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 1085 FSAYLLEKPSLDMCKSLIMLRDTNISGRLNLLDIPLLMHML-QFWRIAFQKFEKGARSRL 1143
FS L +K L+ L+ L + NI G L + PL L + + F K +G + RL
Sbjct: 175 FSLALAKKLYLE-RDKLLKLHEDNIKGILCDGENPLPHDKLDPYLPVTFYKHTQG-KKRL 232
Query: 1144 SSY-SLRPLLWEAGSTVSNKVLECLVLRFTKNKVLT 1178
+ Y + P +A TV NK E LV RF N +
Sbjct: 233 NEYLNTNP---QAVGTVVNKKGETLVERFDNNLSIV 265
>gnl|CDD|107207 cd06446, Trp-synth_B, Tryptophan synthase-beta: Trptophan synthase
is a bifunctional enzyme that catalyses the last two
steps in the biosynthesis of L-tryptophan via its alpha
and beta reactions. In the alpha reaction, indole
3-glycerol phosphate is cleaved reversibly to
glyceraldehyde 3-phosphate and indole at the active site
of the alpha subunit. In the beta reaction, indole
undergoes a PLP-dependent reaction with L-serine to form
L-tryptophan at the active site of the beta subunit.
Members of this CD, Trp-synth_B, are found in all three
major phylogenetic divisions.
Length = 365
Score = 34.8 bits (81), Expect = 0.26
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 13/59 (22%)
Query: 924 SIKLWKEILVDDRLPTFQGRLVYLHSTNPTE-FWAALLEKAY--AKFYGCYENLTHGGS 979
+E + + + GR PT + A L + AK Y E+L H G+
Sbjct: 16 DPDFPEE--LRELYKDYVGR--------PTPLYRAKRLSEYLGGAKIYLKREDLNHTGA 64
Score = 32.1 bits (74), Expect = 1.8
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 13/55 (23%)
Query: 236 WKEILVDDRLPTFQGRLVYLHSTNPTE-FWAALLEKAY--AKFYGCYENLTHGGS 287
+E + + + GR PT + A L + AK Y E+L H G+
Sbjct: 20 PEE--LRELYKDYVGR--------PTPLYRAKRLSEYLGGAKIYLKREDLNHTGA 64
>gnl|CDD|180395 PRK06091, PRK06091, membrane protein FdrA; Validated.
Length = 555
Score = 32.7 bits (75), Expect = 1.5
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 7/67 (10%)
Query: 487 RSSNNKCHVVVSVTQYYETQVD----EKQKRTLYAIGFAVYEISSSMTRLTPQFVAHTKP 542
R+ + + +VT T+ D +Q TL G AV + T L +
Sbjct: 442 RADGQPLYAIATVTG---TERDPQCRSQQIATLEDAGIAVVDSLPEATLLAAALIRPLLS 498
Query: 543 LDVTNHS 549
+
Sbjct: 499 ATQQHTP 505
>gnl|CDD|216978 pfam02331, P35, Apoptosis preventing protein. This viral protein
functions to block the host apoptotic response caused by
infection by the virus. The apoptosis preventing protein
(or early 35kD protein, P35) acts by blocking caspase
protease activity.
Length = 300
Score = 30.9 bits (70), Expect = 3.6
Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 22/119 (18%)
Query: 664 SQFQKILRSHWKENTVVLPDGKSLVAKLLVKYPLEVDVSQFQK---ILRSHWKEKLEGIK 720
S+F+KIL+SH D KS+ A KY L +S+ QK ++ K LE
Sbjct: 114 SKFEKILKSHDY------TDKKSIEA--FKKYCLPKLMSENQKKPYVVVCVLKPGLENNS 165
Query: 721 NNVLTVLILPDGKSLVAKLLVKYPLEVD----HAYSVTGLARVRG-PLGETPLVRLRNP 774
N VL+ P G K++V E++ + Y V LA V G L E P+ L P
Sbjct: 166 NQVLSFEYNPIGN----KVIVPLMHEINDTGLYEYDV--LAIVDGVRLFEKPVQSLILP 218
>gnl|CDD|233488 TIGR01599, PYST-A, Plasmodium yoelii subtelomeric family PYST-A.
This model represents a paralogous family of Plasmodium
yoelii genes preferentially located in the subtelomeric
regions of the chromosomes. Members of this family are
expressed in both the Sporozoite and Gametozoite life
stages. A single high-scoring gene was identified in the
complete genome of P. falciparum as well as a single
gene from P. chaboudi from GenBank which were included
in the seed. There are no obvious homologs to these
genes in any non-Plasmodium organism. These observations
suggest an expansion of this family in yoelii from a
common Plasmodium ancestor gene (present in a single
copy in falciparum).
Length = 208
Score = 30.1 bits (68), Expect = 5.1
Identities = 9/51 (17%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 645 DGKSLVAKLLVKYPLEVDVSQFQKILRSHWKENTVVLPDGKSLVAKLLVKY 695
D +++ K+ + D +++ I+++ W N K + K++ Y
Sbjct: 55 DHNTIIGKIHLTIQ---DPNKYDAIIKTLWDFNDNKKFGRKFIKGKVVRVY 102
>gnl|CDD|236586 PRK09605, PRK09605, bifunctional UGMP family
protein/serine/threonine protein kinase; Validated.
Length = 535
Score = 30.6 bits (70), Expect = 5.5
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
Query: 53 PRQTANYHA------IKRACREKGILYEDPD---FPPGPKL 84
PR+ A +HA IK A E G+ ED D F GP L
Sbjct: 41 PREAAEHHAEAIPKVIKEALEEAGLKPEDIDLVAFSQGPGL 81
>gnl|CDD|131155 TIGR02100, glgX_debranch, glycogen debranching enzyme GlgX. This
family consists of the GlgX protein from the E. coli
glycogen operon and probable equivalogs from other
prokaryotic species. GlgX is not required for glycogen
biosynthesis, but instead acts as a debranching enzyme
for glycogen catabolism. This model distinguishes GlgX
from pullanases and other related proteins that also
operate on alpha-1,6-glycosidic linkages. In the wide
band between the trusted and noise cutoffs are
functionally similar enzymes, mostly from plants, that
act similarly but usually are termed isoamylase [Energy
metabolism, Biosynthesis and degradation of
polysaccharides].
Length = 688
Score = 30.8 bits (70), Expect = 5.8
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 19/79 (24%)
Query: 785 SERSW-EWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHFTHLDLVH--VQMTGWRSLRY 841
+E W +W E D ELL F K L H ++ + R
Sbjct: 539 NEIGWVDWSLD-EGDDELL---------------AFTKKLIALRKAHPVLRRERFFDGRN 582
Query: 842 NQNNLGELSWLAEDGGPVT 860
+ L +++WL DG P+T
Sbjct: 583 EADGLKDVTWLNADGEPMT 601
>gnl|CDD|216109 pfam00770, Peptidase_C5, Adenovirus endoprotease. This family of
adenovirus thiol endoproteases specifically cleave
Gly-Ala peptides in viral precursor peptides.
Length = 183
Score = 29.6 bits (67), Expect = 6.1
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 14/86 (16%)
Query: 157 DPATNYCGLFRPKFYSEDSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSF 216
+P + +F P +S+ L+ + FE L S+L +P DR + +S
Sbjct: 42 NPKSYTFYMFDPFGFSDQKLKQIYQFEYEG------LLKRSALASSP---DRCVTLVKST 92
Query: 217 D----PATNYCGLFRFRFWH-FGEWK 237
P + CGLF F H F W
Sbjct: 93 QSVQGPNSAACGLFCCMFLHAFVNWP 118
>gnl|CDD|234329 TIGR03722, arch_KAE1, universal archaeal protein Kae1. This
family represents the archaeal protein Kae1. Its
partner Bud32 is fused with it in about half of the
known archaeal genomes. The pair, which appears
universal in the archaea, corresponds to EKC/KEOPS
complex in eukaryotes. A recent characterization of the
member from Pyrococcus abyssi, as an iron-binding,
atypical DNA-binding protein with an apurinic lyase
activity, challenges the common annotation of close
homologs as O-sialoglycoprotein endopeptidase. The
latter annotation is based on a characterized protein
from the bacterium Pasteurella haemolytica [DNA
metabolism, DNA replication, recombination, and
repair].
Length = 322
Score = 30.3 bits (69), Expect = 6.5
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
Query: 53 PRQTANYHA------IKRACREKGILYEDPD---FPPGPKL 84
PR+ A +HA IK A E GI ED D F GP L
Sbjct: 38 PREAAEHHAEVAPKLIKEALEEAGISIEDIDAVAFSQGPGL 78
>gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A
[Amino acid transport and metabolism].
Length = 648
Score = 30.4 bits (69), Expect = 7.2
Identities = 32/179 (17%), Positives = 53/179 (29%), Gaps = 30/179 (16%)
Query: 658 PLEVDVSQFQKILRSHWKENTVVLPDGKSLVAKL--------LVKYPLEVDVSQFQKIL- 708
E DV + + W V+ DG + L L+K L V L
Sbjct: 198 GQEGDVMVNARGDQDPWGFRLVLSEDGDFFMLSLWLGTSGKGLIKLGLPDKVGYEWGKLV 257
Query: 709 ---RSHWKEKLEGIKNNVLTVLILPDGKSLVAKLLVKYPLEVDHAYSVTGLARVRGPLGE 765
R+ W + +L L+ + L + P + S+ + + L
Sbjct: 258 NTLRADWTFA--DVDYGLL-YLLTDEDLELGKVIAEFIP---EEEQSLEQVVTTKDKLVA 311
Query: 766 TPLV----RLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFA 820
L RL +GE G+ DK+ E +++F F
Sbjct: 312 GTLDNVSGRLEVYDLKGERIEEVELPPPGALGMGSADKD--------GDEVFLAFTSFT 362
>gnl|CDD|128410 smart00099, btg1, tob/btg1 family. The tob/btg1 is a family of
proteins that inhibit cell proliferation.
Length = 108
Score = 28.6 bits (64), Expect = 7.9
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 24/78 (30%)
Query: 47 YWTVERPRQTANYHAIK----------RACREKGILYEDPDFPPGPKLLFRNKKAPVQSL 96
+W E+P + + + I+ +AC+E G+ +D L N P +
Sbjct: 45 HWYPEKPYKGSGFRCIRINQKVDPVIEQACKESGLDIDD---------LGGN--LPKELT 93
Query: 97 VWMRPHEMCQRPKFYSED 114
+W+ P E+ R E
Sbjct: 94 LWVDPFEVSYR---IGEK 108
>gnl|CDD|225952 COG3418, COG3418, Flagellar biosynthesis/type III secretory pathway
chaperone [Cell motility and secretion / Intracellular
trafficking and secretion / Posttranslational
modification, protein turnover, chaperones].
Length = 146
Score = 29.0 bits (65), Expect = 8.5
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 281 NLTHGGSTTRALQDLTG---GIVQSFALTNQDRYLTFQVLNSAVPRSSL-----LISSIK 332
L+ G LQ++T ++ + +QDR N S I
Sbjct: 29 ALSSGQINGSVLQEITEQKSSLLATLDYLDQDRAKEPNEANIFPDYESNNDLNERWQEII 88
Query: 333 LEKEQKRQLRLRNGLITQ 350
E+ RQ L NG + +
Sbjct: 89 ELTERLRQANLHNGWLLE 106
Score = 29.0 bits (65), Expect = 8.5
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 973 NLTHGGSTTRALQDLTG---GIVQSFALTNQDRYLTFQVLNSAVPRSSL-----LISSIK 1024
L+ G LQ++T ++ + +QDR N S I
Sbjct: 29 ALSSGQINGSVLQEITEQKSSLLATLDYLDQDRAKEPNEANIFPDYESNNDLNERWQEII 88
Query: 1025 LEKEQKRQLRLRNGLITQ 1042
E+ RQ L NG + +
Sbjct: 89 ELTERLRQANLHNGWLLE 106
>gnl|CDD|176859 cd07817, SRPBCC_8, Ligand-binding SRPBCC domain of an
uncharacterized subfamily of proteins. Uncharacterized
group of the SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
superfamily. SRPBCC domains have a deep hydrophobic
ligand-binding pocket and they bind diverse ligands.
SRPBCC domains include the steroidogenic acute
regulatory protein (StAR)-related lipid transfer (START)
domains of mammalian STARD1-STARD15, the C-terminal
catalytic domains of the alpha oxygenase subunit of
Rieske-type non-heme iron aromatic ring-hydroxylating
oxygenases (RHOs_alpha_C), Class I and II
phosphatidylinositol transfer proteins (PITPs), Bet v 1
(the major pollen allergen of white birch, Betula
verrucosa), CoxG, CalC, and related proteins. Other
members of the superfamily include PYR/PYL/RCAR plant
proteins, the aromatase/cyclase (ARO/CYC) domains of
proteins such as Streptomyces glaucescens
tetracenomycin, and the SRPBCC domains of Streptococcus
mutans Smu.440 and related proteins.
Length = 139
Score = 28.7 bits (65), Expect = 9.7
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 13/67 (19%)
Query: 413 EFWMSFEDFAKHFTHLDLVHVGPDD---WMAEPALQSKQPWRAVLARRR------WRT-- 461
+FW FE+ + +H++ V D W A+ W A + + WR+
Sbjct: 17 DFWRDFENLPRFMSHVESVEQLDDTRSHWKAKGPAGLSVEWDAEITEQVPNERIAWRSVE 76
Query: 462 --GYNAG 466
NAG
Sbjct: 77 GADPNAG 83
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.427
Gapped
Lambda K H
0.267 0.0702 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 63,451,747
Number of extensions: 6361303
Number of successful extensions: 5183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5138
Number of HSP's successfully gapped: 36
Length of query: 1218
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1110
Effective length of database: 6,147,370
Effective search space: 6823580700
Effective search space used: 6823580700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (28.9 bits)