RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13030
(1218 letters)
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 372 bits (956), Expect = e-114
Identities = 184/624 (29%), Positives = 275/624 (44%), Gaps = 83/624 (13%)
Query: 30 MNGHATRPDDKQSTLSRYWTVERPRQTAN--YHAIKRACREKGILYEDPDFPPGPKLLFR 87
M G A + + + ER + N Y ++ C E G L++DP FP
Sbjct: 1 MAGIAMKLAKDREAAEGLGSHERAIKYLNQDYETLRNECLEAGALFQDPSFPA------- 53
Query: 88 NKKAPVQSLVWMRPHEMCQRPKFYSEDSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLD 147
+ E + ++
Sbjct: 54 -----------------LPSSLGFKELGPYSSK----------------------TRGIE 74
Query: 148 RVIPPEQSFDPATNYCGLFRPKFYSEDSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLD 207
P E DP +F + R D G LGD+W LAAI+SLTL + L
Sbjct: 75 WKRPTEICADP----------QFIIGGA--TRTDICQGALGDSWLLAAIASLTLNEEILA 122
Query: 208 RVIPPEQSFDPATNYCGLFRFRFWHFGEWKEILVDDRLPTFQGRLVYLHSTNPTEFWAAL 267
RV+P +QSF NY G+F F+FW +GEW E++VDDRLPT G L+++HS +EFW+AL
Sbjct: 123 RVVPLDQSFQE--NYAGIFHFQFWQYGEWVEVVVDDRLPTKDGELLFVHSAEGSEFWSAL 180
Query: 268 LEKAYAKFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAVPRSSLL 327
LEKAYAK GCYE L GG+TT +D TGGI + + L L F+++ A+ + SLL
Sbjct: 181 LEKAYAKINGCYEAL-SGGATTEGFEDFTGGIAEWYELRKPPPNL-FKIIQKALEKGSLL 238
Query: 328 ISSIKLEKEQKRQLRLRNGLITQHAYSVTGLARVRGPLGETPLVRLRNPWARGEWTGPWS 387
SI + + L+ HAYSVTG V L+R+RNPW + EWTG W+
Sbjct: 239 GCSIDITSAADSEAVTYQKLVKGHAYSVTGAEEVESSGSLQKLIRIRNPWGQVEWTGKWN 298
Query: 388 ERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHFTHLDLVHVGPDDWMAEPALQSK 447
+ W+ + + L+ R DGEFWMSF DF +H++ L++ ++ PD S
Sbjct: 299 DNCPSWNTVDPEVRANLTER-QEDGEFWMSFSDFLRHYSRLEICNLTPDTL----TCDSY 353
Query: 448 QPWRAVLARRRWRTGYNAGGGPNFVETTSVNPQFHIQI------PRSSNNKCHVVVSVTQ 501
+ W+ WR G AGG N+ T +NPQ+ I++ C +V + Q
Sbjct: 354 KKWKLTKMDGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQ 413
Query: 502 YYETQVDEKQKRTLYAIGFAVYEISSSMTRLTPQ------FVAHTKPLDVTNHSVAREVV 555
+ + K ++ IGF +YE+ +T T F+ REV+
Sbjct: 414 KHRRR-QRKMGEDMHTIGFGIYEVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVL 472
Query: 556 TFFTLPPGDFIVVPQTNVPDCDGKFLLRIFTDEQRDFIVVPQTNVPDCDGKFLLRIFTDE 615
F LPPG++++VP T P +G F +R+F++++ D+ V + + +
Sbjct: 473 NRFKLPPGEYVLVPSTFEPHKNGDFCIRVFSEKKADYQTVDDEIEANIEEIEANEEDIGD 532
Query: 616 QSNIWEVNEDNMVFRNISTEFLEN 639
IS L+
Sbjct: 533 GFRRLFAQLAGE-DAEISAFELQT 555
Score = 163 bits (412), Expect = 2e-41
Identities = 68/154 (44%), Positives = 92/154 (59%), Gaps = 2/154 (1%)
Query: 928 WKEILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDL 987
W E++VDDRLPT G L+++HS +EFW+ALLEKAYAK GCYE L GG+TT +D
Sbjct: 149 WVEVVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEAL-SGGATTEGFEDF 207
Query: 988 TGGIVQSFALTNQDRYLTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAYSV 1047
TGGI + + L L F+++ A+ + SLL SI + + L+ HAYSV
Sbjct: 208 TGGIAEWYELRKPPPNL-FKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSV 266
Query: 1048 TGLARVRGPLGETPLVRLRNPWARGEWTGPWSEF 1081
TG V L+R+RNPW + EWTG W++
Sbjct: 267 TGAEEVESSGSLQKLIRIRNPWGQVEWTGKWNDN 300
Score = 98.7 bits (245), Expect = 4e-21
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 1/127 (0%)
Query: 712 WKEKLEGIKNNVLTVLILPDGKSLVAKLLVKYPLEVDHAYSVTGLARVRGPLGETPLVRL 771
+K + ++ L + + ++ + L HAYSVTG V L+R+
Sbjct: 225 FKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSVTGAEEVESSGSLQKLIRI 284
Query: 772 RNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHFTHLDLVHV 831
RNPW + EWTG W++ W+ + + L+ R DGEFWMSF DF +H++ L++ ++
Sbjct: 285 RNPWGQVEWTGKWNDNCPSWNTVDPEVRANLTER-QEDGEFWMSFSDFLRHYSRLEICNL 343
Query: 832 QMTGWRS 838
Sbjct: 344 TPDTLTC 350
Score = 89.9 bits (222), Expect = 2e-18
Identities = 29/142 (20%), Positives = 66/142 (46%), Gaps = 12/142 (8%)
Query: 1078 WSEFFLNFSAYLLEKPSLDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEK 1137
+ S++ CK ++ + D + SG+L L + +L +Q ++ +++ +
Sbjct: 557 LRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQKYQKIYREIDV 616
Query: 1138 GARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFTKNK-VLTWENFIMAMVRLHLAHGHP 1196
++SY +R L EAG + ++ + +V RF ++ ++ ++NF+ +VRL +
Sbjct: 617 DRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEILFKI- 675
Query: 1197 NDYLFLTLFMFKKTDVDQIGEV 1218
FK+ D + G +
Sbjct: 676 ----------FKQLDPENTGTI 687
Score = 55.6 bits (133), Expect = 8e-08
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 859 VTMLEAARISFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAVPRS 918
+LE A GCYE L GG+TT +D TGGI + + L L F+++ A+ +
Sbjct: 178 SALLEKAYAKINGCYEAL-SGGATTEGFEDFTGGIAEWYELRKPPPNL-FKIIQKALEKG 235
Query: 919 SLLISSIKLW 928
SLL SI +
Sbjct: 236 SLLGCSIDIT 245
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 367 bits (942), Expect = e-110
Identities = 169/487 (34%), Positives = 246/487 (50%), Gaps = 27/487 (5%)
Query: 129 DAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRPKFYSEDSLQGRFDFEAGRLG 188
D F SL + + T P+F + + R D G LG
Sbjct: 48 DPAFPPVSHSLGFKELGPNSSKTYGIKWKRPTELLS--NPQFIVDGA--TRTDICQGALG 103
Query: 189 DAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRFRFWHFGEWKEILVDDRLPTF 248
D+W LAAI+SLTL L RV+P QSF Y G+F F+ W FGEW +++VDD LPT
Sbjct: 104 DSWLLAAIASLTLNETILHRVVPYGQSFQE--GYAGIFHFQLWQFGEWVDVVVDDLLPTK 161
Query: 249 QGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQ 308
G+LV++HS EFW+ALLEKAYAK G YE L GG T+ A +D TGG+ + + L
Sbjct: 162 DGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEAL-SGGCTSEAFEDFTGGVTEWYDLQKA 220
Query: 309 DRYLTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAYSVTGLARVRGPLGET 368
L +Q++ A+ R SLL SI + + + L+ HAYSVT +V
Sbjct: 221 PSDL-YQIILKALERGSLLGCSINISDIRDLEAITFKNLVRGHAYSVTDAKQVTYQGQRV 279
Query: 369 PLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHFTHL 428
L+R+RNPW EW GPWS+ S+EW+ + ++E L ++ DGEFWMSF DF + FT L
Sbjct: 280 NLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVK-MEDGEFWMSFRDFIREFTKL 338
Query: 429 DLVHVGPDDWMAEPALQSKQPWRAVLARRRWRTGYNAGGGPNFVETTSVNPQFHIQIPRS 488
++ ++ PD ++ + W WR G AGG N+ T VNPQF I++
Sbjct: 339 EICNLTPDALK----SRTLRNWNTTFYEGTWRRGSTAGGCRNYPATFWVNPQFKIRLEEV 394
Query: 489 S--------NNKCHVVVSVTQYYETQVDEKQKRTLYAIGFAVYEI----SSSMTRLTPQF 536
+ C ++++ Q + + + + R + IGFAVY++ + L F
Sbjct: 395 DDADDYDSRESGCSFLLALMQKHRRR-ERRFGRDMETIGFAVYQVPRELAGQPVHLKRDF 453
Query: 537 VAHTKPLDVTNHSV-AREVVTFFTLPPGDFIVVPQTNVPDCDGKFLLRIFTDEQRDFIVV 595
+ H + REV LPPG++IVVP T P+ +G FLLR F++++ +
Sbjct: 454 FLANASRAQSEHFINLREVSNRIRLPPGEYIVVPSTFEPNKEGDFLLRFFSEKKAGTQEL 513
Query: 596 PQTNVPD 602
+
Sbjct: 514 DDQIQAN 520
Score = 172 bits (436), Expect = 7e-44
Identities = 66/153 (43%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Query: 928 WKEILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDL 987
W +++VDD LPT G+LV++HS EFW+ALLEKAYAK G YE L GG T+ A +D
Sbjct: 149 WVDVVVDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEAL-SGGCTSEAFEDF 207
Query: 988 TGGIVQSFALTNQDRYLTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAYSV 1047
TGG+ + + L L +Q++ A+ R SLL SI + + + L+ HAYSV
Sbjct: 208 TGGVTEWYDLQKAPSDL-YQIILKALERGSLLGCSINISDIRDLEAITFKNLVRGHAYSV 266
Query: 1048 TGLARVRGPLGETPLVRLRNPWARGEWTGPWSE 1080
T +V L+R+RNPW EW GPWS+
Sbjct: 267 TDAKQVTYQGQRVNLIRMRNPWGEVEWKGPWSD 299
Score = 104 bits (259), Expect = 1e-22
Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 1/127 (0%)
Query: 712 WKEKLEGIKNNVLTVLILPDGKSLVAKLLVKYPLEVDHAYSVTGLARVRGPLGETPLVRL 771
++ L+ ++ L + + + L HAYSVT +V L+R+
Sbjct: 225 YQIILKALERGSLLGCSINISDIRDLEAITFKNLVRGHAYSVTDAKQVTYQGQRVNLIRM 284
Query: 772 RNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHFTHLDLVHV 831
RNPW EW GPWS+ S+EW+ + ++E L ++ DGEFWMSF DF + FT L++ ++
Sbjct: 285 RNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVK-MEDGEFWMSFRDFIREFTKLEICNL 343
Query: 832 QMTGWRS 838
+S
Sbjct: 344 TPDALKS 350
Score = 99.1 bits (246), Expect = 4e-21
Identities = 24/126 (19%), Positives = 57/126 (45%), Gaps = 12/126 (9%)
Query: 1094 SLDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGARSRLSSYSLRPLLW 1153
+D C+S++ + D++ +G+L + L + ++ W+ +++FE + S L
Sbjct: 772 GIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQGIYKRFETDRSGTIGSNELPGAFE 831
Query: 1154 EAGSTVSNKVLECLVLRF-TKNKVLTWENFIMAMVRLHLAHGHPNDYLFLTLFMFKKTDV 1212
AG ++ + ++ R+ + + ++NFI +VRL F+ D
Sbjct: 832 AAGFHLNQHIYSMIIRRYSDETGNMDFDNFISCLVRLDAMFR-----------AFRSLDK 880
Query: 1213 DQIGEV 1218
+ G++
Sbjct: 881 NGTGQI 886
Score = 88.7 bits (219), Expect = 7e-18
Identities = 30/126 (23%), Positives = 68/126 (53%), Gaps = 12/126 (9%)
Query: 1094 SLDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGARSRLSSYSLRPLLW 1153
SL+ C+S++ L D + +G+L L++ +L + ++ + F+KF+ +S+Y +R +
Sbjct: 575 SLESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLTIFRKFDLDKSGSMSAYEMRMAIE 634
Query: 1154 EAGSTVSNKVLECLVLRFTKNK-VLTWENFIMAMVRLHLAHGHPNDYLFLTLFMFKKTDV 1212
AG + ++ + +V RF ++ ++ ++NF+ +VRL + +FK+ D
Sbjct: 635 AAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEILFK-----------IFKQLDP 683
Query: 1213 DQIGEV 1218
+ G +
Sbjct: 684 ENTGTI 689
Score = 55.9 bits (134), Expect = 7e-08
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 859 VTMLEAARISFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAVPRS 918
+LE A G YE L GG T+ A +D TGG+ + + L L +Q++ A+ R
Sbjct: 178 SALLEKAYAKVNGSYEAL-SGGCTSEAFEDFTGGVTEWYDLQKAPSDL-YQIILKALERG 235
Query: 919 SLLISSIKLWKEILVDDRLPT 939
SLL SI + ++
Sbjct: 236 SLLGCSINISDIRDLEAITFK 256
>2nqa_A Calpain 8; calpain, calcium-dependent cytoplasmic cysteine
proteinases, like, EF-hand, structural genomics,
structural genomics CON SGC; HET: AR7; 2.20A {Homo
sapiens}
Length = 326
Score = 276 bits (708), Expect = 2e-84
Identities = 127/308 (41%), Positives = 170/308 (55%), Gaps = 9/308 (2%)
Query: 129 DAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRPKFYSEDSLQGRFDFEAGRLG 188
D F A S+L + T C P+F + R D G LG
Sbjct: 28 DPEFPACPSALGYKDLGPGSPQTQGIIWKRPTELC--PSPQFIVGGA--TRTDICQGGLG 83
Query: 189 DAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRFRFWHFGEWKEILVDDRLPTF 248
D W LAAI+SLTL + L RV+P +Q F NY G+F F+FW +GEW E+++DDRLPT
Sbjct: 84 DCWLLAAIASLTLNEELLYRVVPRDQDFQE--NYAGIFHFQFWQYGEWVEVVIDDRLPTK 141
Query: 249 QGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQ 308
G+L++LHS EFW+ALLEKAYAK GCYE L GGST +D TGGI + + L
Sbjct: 142 NGQLLFLHSEQGNEFWSALLEKAYAKLNGCYEAL-AGGSTVEGFEDFTGGISEFYDLKKP 200
Query: 309 DRYLTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAYSVTGLARVRGPLGET 368
L +Q++ A+ SLL SI + + + L+ HAYSVTG+ V
Sbjct: 201 PANL-YQIIRKALCAGSLLGCSIDVYSAAEAEAITSQKLVKSHAYSVTGVEEVNFQGHPE 259
Query: 369 PLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHFTHL 428
L+RLRNPW EW+G WS+ + EW+ + R KE L + DGEFWMS DF + F+ L
Sbjct: 260 KLIRLRNPWGEVEWSGAWSDDAPEWNHIDPRRKEELDKK-VEDGEFWMSLSDFVRQFSRL 318
Query: 429 DLVHVGPD 436
++ ++ PD
Sbjct: 319 EICNLSPD 326
Score = 156 bits (395), Expect = 4e-42
Identities = 69/153 (45%), Positives = 91/153 (59%), Gaps = 2/153 (1%)
Query: 928 WKEILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDL 987
W E+++DDRLPT G+L++LHS EFW+ALLEKAYAK GCYE L GGST +D
Sbjct: 129 WVEVVIDDRLPTKNGQLLFLHSEQGNEFWSALLEKAYAKLNGCYEAL-AGGSTVEGFEDF 187
Query: 988 TGGIVQSFALTNQDRYLTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAYSV 1047
TGGI + + L L +Q++ A+ SLL SI + + + L+ HAYSV
Sbjct: 188 TGGISEFYDLKKPPANL-YQIIRKALCAGSLLGCSIDVYSAAEAEAITSQKLVKSHAYSV 246
Query: 1048 TGLARVRGPLGETPLVRLRNPWARGEWTGPWSE 1080
TG+ V L+RLRNPW EW+G WS+
Sbjct: 247 TGVEEVNFQGHPEKLIRLRNPWGEVEWSGAWSD 279
Score = 117 bits (295), Expect = 8e-29
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 710 SHWKEKLEGIKNNVLTVLILPDGKSLVAKLLVKYPLEVDHAYSVTGLARVRGPLGETPLV 769
+ ++ + + L + + A+ + L HAYSVTG+ V L+
Sbjct: 203 NLYQIIRKALCAGSLLGCSIDVYSAAEAEAITSQKLVKSHAYSVTGVEEVNFQGHPEKLI 262
Query: 770 RLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHFTHLDLV 829
RLRNPW EW+G WS+ + EW+ + R KE L + DGEFWMS DF + F+ L++
Sbjct: 263 RLRNPWGEVEWSGAWSDDAPEWNHIDPRRKEELDKK-VEDGEFWMSLSDFVRQFSRLEIC 321
Query: 830 HV 831
++
Sbjct: 322 NL 323
Score = 46.2 bits (109), Expect = 4e-05
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 859 VTMLEAARISFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAVPRS 918
+LE A GCYE L GGST +D TGGI + + L L +Q++ A+
Sbjct: 158 SALLEKAYAKLNGCYEAL-AGGSTVEGFEDFTGGISEFYDLKKPPANL-YQIIRKALCAG 215
Query: 919 SLLISSIKLW 928
SLL SI ++
Sbjct: 216 SLLGCSIDVY 225
>2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor,
alpha-ketoamide, hydrolase, thiol protease; HET: K2Z;
1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A*
2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A
2ary_A 1zcm_A* 1mdw_A
Length = 339
Score = 257 bits (658), Expect = 3e-77
Identities = 122/307 (39%), Positives = 167/307 (54%), Gaps = 9/307 (2%)
Query: 132 FLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRPKFYSEDSLQGRFDFEAGRLGDAW 191
F SL + + T P+F + + R D G LGD W
Sbjct: 36 FPPVSHSLGFKELGPNSSKTYGIKWKRPTELLS--NPQFIVDGA--TRTDICQGALGDCW 91
Query: 192 FLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRFRFWHFGEWKEILVDDRLPTFQGR 251
LAAI+SLTL L RV+P QSF Y G+F F+ W FGEW +++VDD LPT G+
Sbjct: 92 LLAAIASLTLNETILHRVVPYGQSFQE--GYAGIFHFQLWQFGEWVDVVVDDLLPTKDGK 149
Query: 252 LVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQDRY 311
LV++HS EFW+ALLEKAYAK G YE L GG T+ A +D TGG+ + + L
Sbjct: 150 LVFVHSAQGNEFWSALLEKAYAKVNGSYEAL-SGGCTSEAFEDFTGGVTEWYDLQKAPSD 208
Query: 312 LTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAYSVTGLARVRGPLGETPLV 371
L +Q++ A+ R SLL SI + + + L+ HAYSVT +V L+
Sbjct: 209 L-YQIILKALERGSLLGCSINISDIRDLEAITFKNLVRGHAYSVTDAKQVTYQGQRVNLI 267
Query: 372 RLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKHFTHLDLV 431
R+RNPW EW GPWS+ S+EW+ + ++E L ++ DGEFWMSF DF + FT L++
Sbjct: 268 RMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVK-MEDGEFWMSFRDFIREFTKLEIC 326
Query: 432 HVGPDDW 438
++ PD
Sbjct: 327 NLTPDLE 333
Score = 145 bits (366), Expect = 4e-38
Identities = 66/153 (43%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Query: 928 WKEILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDL 987
W +++VDD LPT G+LV++HS EFW+ALLEKAYAK G YE L GG T+ A +D
Sbjct: 134 WVDVVVDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEAL-SGGCTSEAFEDF 192
Query: 988 TGGIVQSFALTNQDRYLTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAYSV 1047
TGG+ + + L L +Q++ A+ R SLL SI + + + L+ HAYSV
Sbjct: 193 TGGVTEWYDLQKAPSDL-YQIILKALERGSLLGCSINISDIRDLEAITFKNLVRGHAYSV 251
Query: 1048 TGLARVRGPLGETPLVRLRNPWARGEWTGPWSE 1080
T +V L+R+RNPW EW GPWS+
Sbjct: 252 TDAKQVTYQGQRVNLIRMRNPWGEVEWKGPWSD 284
Score = 100 bits (249), Expect = 9e-23
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 745 LEVDHAYSVTGLARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSI 804
L HAYSVT +V L+R+RNPW EW GPWS+ S+EW+ + ++E L +
Sbjct: 243 LVRGHAYSVTDAKQVTYQGQRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRV 302
Query: 805 RVSNDGEFWMSFEDFAKHFTHLDLVHV 831
+ DGEFWMSF DF + FT L++ ++
Sbjct: 303 K-MEDGEFWMSFRDFIREFTKLEICNL 328
Score = 42.8 bits (100), Expect = 5e-04
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 859 VTMLEAARISFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAVPRS 918
+LE A G YE L GG T+ A +D TGG+ + + L L +Q++ A+ R
Sbjct: 163 SALLEKAYAKVNGSYEAL-SGGCTSEAFEDFTGGVTEWYDLQKAPSDL-YQIILKALERG 220
Query: 919 SLLISSIKLW 928
SLL SI +
Sbjct: 221 SLLGCSINIS 230
>1ziv_A Calpain 9; cysteine protease, papain, calcium-dependent, thiol
protease, structural genomics consortium, SGC,
hydrolase; 2.31A {Homo sapiens} SCOP: d.3.1.3 PDB:
2p0r_A*
Length = 339
Score = 256 bits (654), Expect = 1e-76
Identities = 122/278 (43%), Positives = 167/278 (60%), Gaps = 7/278 (2%)
Query: 168 PKFYSEDSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFR 227
P+F + R D G LGD W LAAI+SLTL K L RVIP +QSF P Y G+F
Sbjct: 69 PEFILGGA--TRTDICQGELGDCWLLAAIASLTLNQKALARVIPQDQSFGP--GYAGIFH 124
Query: 228 FRFWHFGEWKEILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGS 287
F+FW EW ++++DDRLPTF+ RLV+LHS + EFW+ALLEKAYAK G YE L GGS
Sbjct: 125 FQFWQHSEWLDVVIDDRLPTFRDRLVFLHSADHNEFWSALLEKAYAKLNGSYEAL-KGGS 183
Query: 288 TTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGL 347
A++D TGG+ ++F +++L A+ R SLL I + + R GL
Sbjct: 184 AIEAMEDFTGGVAETFQTKEAPENF-YEILEKALKRGSLLGCFIDTRSAAESEARTPFGL 242
Query: 348 ITQHAYSVTGLARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIR 407
I HAYSVTG+ +V L+R+RNPW + EW G WS+ S EW + +++ L
Sbjct: 243 IKGHAYSVTGIDQVSFRGQRIELIRIRNPWGQVEWNGSWSDSSPEWRSVGPAEQKRLCHT 302
Query: 408 VSNDGEFWMSFEDFAKHFTHLDLVHVGPDDWMAEPALQ 445
+DGEFWM+F+DF HF +++ ++ P D + E A+
Sbjct: 303 ALDDGEFWMAFKDFKAHFDKVEICNLTP-DALEEDAIH 339
Score = 147 bits (372), Expect = 6e-39
Identities = 69/153 (45%), Positives = 94/153 (61%), Gaps = 2/153 (1%)
Query: 928 WKEILVDDRLPTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDL 987
W ++++DDRLPTF+ RLV+LHS + EFW+ALLEKAYAK G YE L GGS A++D
Sbjct: 133 WLDVVIDDRLPTFRDRLVFLHSADHNEFWSALLEKAYAKLNGSYEAL-KGGSAIEAMEDF 191
Query: 988 TGGIVQSFALTNQDRYLTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLITQHAYSV 1047
TGG+ ++F +++L A+ R SLL I + + R GLI HAYSV
Sbjct: 192 TGGVAETFQTKEAPENF-YEILEKALKRGSLLGCFIDTRSAAESEARTPFGLIKGHAYSV 250
Query: 1048 TGLARVRGPLGETPLVRLRNPWARGEWTGPWSE 1080
TG+ +V L+R+RNPW + EW G WS+
Sbjct: 251 TGIDQVSFRGQRIELIRIRNPWGQVEWNGSWSD 283
Score = 108 bits (271), Expect = 1e-25
Identities = 38/129 (29%), Positives = 68/129 (52%)
Query: 703 QFQKILRSHWKEKLEGIKNNVLTVLILPDGKSLVAKLLVKYPLEVDHAYSVTGLARVRGP 762
Q ++ + ++ + +K L + + ++ + L HAYSVTG+ +V
Sbjct: 200 QTKEAPENFYEILEKALKRGSLLGCFIDTRSAAESEARTPFGLIKGHAYSVTGIDQVSFR 259
Query: 763 LGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLSIRVSNDGEFWMSFEDFAKH 822
L+R+RNPW + EW G WS+ S EW + +++ L +DGEFWM+F+DF H
Sbjct: 260 GQRIELIRIRNPWGQVEWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGEFWMAFKDFKAH 319
Query: 823 FTHLDLVHV 831
F +++ ++
Sbjct: 320 FDKVEICNL 328
Score = 104 bits (260), Expect = 3e-24
Identities = 47/115 (40%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
Query: 57 ANYHAIKRACREKGILYEDPDFPPGPKLLFRNKKAPVQSLVWMRPHEMCQRPKFYSEDSL 116
+++ +++ C ++G L+ED DFP LF +++ P VW RP E+ + P+F +
Sbjct: 19 SSFEQMRQECLQRGTLFEDADFPASNSSLFYSER-PQIPFVWKRPGEIVKNPEFILGGA- 76
Query: 117 QGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRPKFY 171
R D G LGD W LAAI+SLTL K L RVIP +QSF P Y G+F +F+
Sbjct: 77 -TRTDICQGELGDCWLLAAIASLTLNQKALARVIPQDQSFGP--GYAGIFHFQFW 128
Score = 43.6 bits (102), Expect = 3e-04
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 859 VTMLEAARISFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQDRYLTFQVLNSAVPRS 918
+LE A G YE L GGS A++D TGG+ ++F +++L A+ R
Sbjct: 162 SALLEKAYAKLNGSYEAL-KGGSAIEAMEDFTGGVAETFQTKEAPENF-YEILEKALKRG 219
Query: 919 SLLISSIKLWKE 930
SLL I
Sbjct: 220 SLLGCFIDTRSA 231
>2qfe_A Calpain-7; C2-like domain, hydrolase, nuclear protein, protease,
thiol protease; 1.45A {Homo sapiens}
Length = 148
Score = 90.7 bits (225), Expect = 2e-21
Identities = 32/175 (18%), Positives = 54/175 (30%), Gaps = 39/175 (22%)
Query: 416 MSFEDFAKHFTHLDLVHVGPDDWMAEPALQSKQPWRAVLARRRWRTGYNAGGGPNFVETT 475
M H + + P +W G +AGG NF ET
Sbjct: 1 MGSSHHHHHHSSGLVPRGSPYTLSKR-------------INGKWS-GQSAGGCGNFQETH 46
Query: 476 SVNPQFHIQIPRSSNNKCHVVVSVTQYYETQVDEKQKRTLYAIGFAVYEISSSMTRLTPQ 535
NP + I +++ E + Y++GF V +S+
Sbjct: 47 KNNPIYQFHIE----KTGPLLI-----------ELRGPRQYSVGFEVVTVSTLGDPGPHG 91
Query: 536 FVAHTKPLDVTNHSVAREVVTFFT---LPPGDFIVVPQTNVPDCDGKFLLRIFTD 587
F+ + R + +P G F ++P T +P +G F L +
Sbjct: 92 FLRK-------SSGDYRCGFCYLELENIPSGIFNIIPSTFLPKQEGPFFLDFNSI 139
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 88.2 bits (219), Expect = 3e-20
Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 13/126 (10%)
Query: 1094 SLDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGARSRLSSYSLRPLLW 1153
+L+ C+ ++ + D ++SG + + L +L WR F F+ + L+ L
Sbjct: 40 NLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALT 99
Query: 1154 EAGSTVSNKVLECLVLRFTKNKVLTWENFIMAMVRLHLAHGHPNDYLFLTLF-MFKKTDV 1212
G ++ + + + R++ + +T++++I V+L L F++ D
Sbjct: 100 TMGFRLNPQTVNSIAKRYSTSGKITFDDYIACCVKLR------------ALTDSFRRRDS 147
Query: 1213 DQIGEV 1218
Q G V
Sbjct: 148 AQQGMV 153
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB:
1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 86.6 bits (215), Expect = 9e-20
Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 13/126 (10%)
Query: 1094 SLDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGARSRLSSYSLRPLLW 1153
SL+ C+ +I + D + +G++ L L W+ F ++ + + LR +
Sbjct: 38 SLETCRIMIAMLDRDHTGKMGFNAFKELWAALNAWKENFMTVDQDGSGTVEHHELRQAIG 97
Query: 1154 EAGSTVSNKVLECLVLRFTKNKVLTWENFIMAMVRLHLAHGHPNDYLFLTLF-MFKKTDV 1212
G +S + L +V R++KN + +++++ V+L L F+K D
Sbjct: 98 LMGYRLSPQTLTTIVKRYSKNGRIFFDDYVACCVKLR------------ALTDFFRKRDH 145
Query: 1213 DQIGEV 1218
Q G
Sbjct: 146 LQQGSA 151
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 86.4 bits (214), Expect = 3e-19
Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 13/129 (10%)
Query: 1091 EKPSLDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGARSRLSSYSLRP 1150
+ +L+ C+ ++ + D ++SG + + L +L WR F F+ + L+
Sbjct: 68 KPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQK 127
Query: 1151 LLWEAGSTVSNKVLECLVLRFTKNKVLTWENFIMAMVRLHLAHGHPNDYLFLTLF-MFKK 1209
L G +S + + + R++ N +T++++I V+L L F++
Sbjct: 128 ALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIACCVKLR------------ALTDSFRR 175
Query: 1210 TDVDQIGEV 1218
D Q G V
Sbjct: 176 RDTAQQGVV 184
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein
protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A*
1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B
1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 83.6 bits (207), Expect = 1e-18
Identities = 25/141 (17%), Positives = 61/141 (43%), Gaps = 12/141 (8%)
Query: 1079 SEFFLNFSAYLLEKPSLDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKG 1138
++ + +D C+S++ + D++ +G+L + L + ++ W+ +++F+
Sbjct: 30 NKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQAIYKQFDVD 89
Query: 1139 ARSRLSSYSLRPLLWEAGSTVSNKVLECLVLRFT-KNKVLTWENFIMAMVRLHLAHGHPN 1197
+ S L AG ++ + ++ R++ + + ++NFI +VRL
Sbjct: 90 RSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYSDEGGNMDFDNFISCLVRLDAMFR--- 146
Query: 1198 DYLFLTLFMFKKTDVDQIGEV 1218
FK D D G++
Sbjct: 147 --------AFKSLDKDGTGQI 159
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like,
EF-hand, structural genomics, structural genomics CON
SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 74.6 bits (183), Expect = 2e-15
Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 19/129 (14%)
Query: 1094 SLDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGARSRLSSYSLRPLLW 1153
SLD C+SL+ L + ++GRL+ + L L ++ FQK + L S L +
Sbjct: 44 SLDECRSLVALMELKVNGRLDQEEFARLWKRLVHYQHVFQKVQTS-PGVLLSSDLWKAIE 102
Query: 1154 EA----GSTVSNKVLECLVLRFT-KNKVLTWENFIMAMVRLHLAHGHPNDYLFLTLF-MF 1207
G +S ++L + LR++ +++ + + ++RL + F
Sbjct: 103 NTDFLRGIFISRELLHLVTLRYSDSVGRVSFPSLVCFLMRLE------------AMAKTF 150
Query: 1208 KKTDVDQIG 1216
+ D G
Sbjct: 151 RNLSKDGKG 159
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 61.1 bits (149), Expect = 9e-11
Identities = 21/128 (16%), Positives = 52/128 (40%), Gaps = 15/128 (11%)
Query: 1094 SLDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGARSRLSSYSLRPLLW 1153
+ +S+I + D +N + + + W+ F+ +++ + L+ L
Sbjct: 42 NPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALS 101
Query: 1154 EAGSTVSNKVLECLVLRFTKNK--VLTWENFIMAMVRLHLAHGHPNDYLFLTLF-MFKKT 1210
G +S++ + L+ +F + + +++FI + L L +F++
Sbjct: 102 GFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQ------------RLTDIFRRY 149
Query: 1211 DVDQIGEV 1218
D DQ G +
Sbjct: 150 DTDQDGWI 157
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 61.3 bits (149), Expect = 2e-10
Identities = 12/100 (12%), Positives = 33/100 (33%), Gaps = 1/100 (1%)
Query: 1092 KPSLDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGARSRLSSYSLRPL 1151
+ S ++ + DT+ +G ++ + + ++ F + L + + P
Sbjct: 83 RLSPQTALRMMRIFDTDFNGHISFYEFMAMYKFMELAYNLFVMNARARSGTLEPHEILPA 142
Query: 1152 LWEAGSTVSNKVLECLVLRFTKNK-VLTWENFIMAMVRLH 1190
L + G ++ + L F + +I
Sbjct: 143 LQQLGFYINQRTSLLLHRLFARGMAFCDLNCWIAICAFAA 182
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 56.2 bits (136), Expect = 5e-09
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 1092 KPSLDMCKSLIMLRDTNISGRLNLLDIPLLMHMLQFWRIAFQKFEKGARSRLSSYSLRPL 1151
SL + L+ + D N SG + + L H + R F+K + RL S +R
Sbjct: 59 PFSLATTEKLLHMYDKNHSGEITFDEFKDLHHFILSMREGFRKRDSSGDGRLDSNEVRAA 118
Query: 1152 LWEAGSTVSNKVLECLVLRFTKNK--VLTWENFIMAMVRL 1189
L +G VS + + L+ +F + + L +++++ + +
Sbjct: 119 LLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVELSIFV 158
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 3e-07
Identities = 77/453 (16%), Positives = 137/453 (30%), Gaps = 130/453 (28%)
Query: 822 HFTHLDLVHVQMTGWRSLRYNQNNLGELSWLAEDGGPVTMLEAARISFYGCY--ENLTHG 879
H H+D GE + +D V E A + + C +++
Sbjct: 3 HHHHMDF----------------ETGEHQYQYKDILSV--FEDAFVDNFDCKDVQDMPKS 44
Query: 880 GSTTRALQDLTGGIVQSFALTNQDRYLTFQVL----NSAVPR---SSL------LISSIK 926
+ + I+ S + L F L V + L L+S IK
Sbjct: 45 ILSKEEIDH----IIMSKDAVSGTLRL-FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 927 -------LWKEILVDDRLPTFQGRLVY--LHSTNPTEFWA---ALLEKAYAKFYGCYENL 974
+ + ++ R + V+ + + + ALLE AK N+
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK------NV 153
Query: 975 T-HG----GSTTRALQDLTGGIVQSFALTNQDRYLTFQV--LNSAVPRSSLLISSIKLEK 1027
G G T + + S+ + + + F++ LN S + LE
Sbjct: 154 LIDGVLGSGKTW-----VALDVCLSYKVQCK---MDFKIFWLNLKNCNSPETV----LEM 201
Query: 1028 EQKRQLRLRNGLITQHAYSVT-------GLARVRGPLGETPLVR----LRNPWARGEWTG 1076
QK ++ ++ +S A +R L P L N W
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW-- 259
Query: 1077 PWSEFFLNFSAYLLEKPSLDMCKSLIMLRDTNISGRLNLLDIPLLMHM-LQFWRIAFQKF 1135
F N S CK L+ R ++ + L H+ L +
Sbjct: 260 ---NAF-NLS-----------CKILLTTRFKQVT---DFLSAATTTHISLDHHSMTLTPD 301
Query: 1136 EKGARSRLSSY------SLRPLLWEAGSTVSNKVLECLVLRFTKNKVLTWENF------- 1182
E +S L Y L E +T N ++ ++ + TW+N+
Sbjct: 302 E--VKSLLLKYLDCRPQDLPR---EVLTT--NPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 1183 IMAMVRLHLAHGHPNDY--LFLTLFMFKKTDVD 1213
+ ++ L P +Y +F L +F
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPP-SAH 386
Score = 51.0 bits (121), Expect = 2e-06
Identities = 94/715 (13%), Positives = 196/715 (27%), Gaps = 223/715 (31%)
Query: 563 GDFIVVPQTN-VPDCDGK----FLLRIFTDEQRDFIVVPQTNVPDCDGK--FLLRIFTDE 615
D + V + V + D K I + E+ D I+ D L +
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII----MSKDAVSGTLRLFWTLLSK 74
Query: 616 QSNIWEVNEDNMVFRNISTEFLENTVVLPDGKSLVAKLLVKYPLEVDVSQFQKILRSHWK 675
Q + + +F+E V+ + Y L S K
Sbjct: 75 QEEMVQ-------------KFVE-EVLRIN-----------YKF----------LMSPIK 99
Query: 676 ENTVVLPDGKSLVAKLLVKY--PLEVDVSQFQK--ILRSHWKEKLEGIKNNVLTVLILPD 731
S++ ++ ++ L D F K + R + ++ +L L
Sbjct: 100 TE----QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR---LQPYLKLRQALLE---LRP 149
Query: 732 GKSLVAKLLVKYPLEVDHAYSVTGLARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEW 791
K+++ + G+ G G+T +
Sbjct: 150 AKNVL----------------IDGVL---G-SGKTWVA---------------------- 167
Query: 792 DGLSERDKELLSIRVSNDGEFWMSFEDFAKHFTHLDLVHVQMTGWRSLRYNQNNLGELSW 851
++ + FW++ + ++ + + N + + S
Sbjct: 168 -LDVCLSYKVQ--CKMDFKIFWLNL---KNCNSPETVLEMLQKLLYQIDPNWTSRSDHS- 220
Query: 852 LAEDGGPVTMLEA-ARISFYGCYENLTHGGSTTRALQDL----TGGIVQSFA------LT 900
+ + A + + L L +F LT
Sbjct: 221 ---SNIKLRIHSIQAELRRLLKSKPYE------NCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 901 NQDRYLTFQVLNSAVPRSSLLISSIKLWKEILVDDRLPTFQGRLVYLHSTNPTEFWAALL 960
+ + +T + + I +D T P E +
Sbjct: 272 TRFKQVTDFLSAATT-------------THISLDHHSMTL----------TPDE-----V 303
Query: 961 EKAYAKFYGC-YENLTHGGSTTRALQ-DLTGGIVQSFALTNQDRYLTFQVLNSAVPRSSL 1018
+ K+ C ++L TT + + ++ T D + V + +++
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-DNWK--HVNCDKL--TTI 358
Query: 1019 LISSIK-LEKEQKRQLRLRNGLITQHAYSVTGLARVRGPLGETPLVRLRNPWARGEWTGP 1077
+ SS+ LE + R++ + + + L + W +
Sbjct: 359 IESSLNVLEPAEYRKM-----------FDRLSVFPPSAHIPTILLSLI---WFDVIKSDV 404
Query: 1078 WSEFFLNFSAYLLEKPSL---DMCKSLIMLRDTNISGRLNLLDIPLLMH--MLQFWRIAF 1132
+N L K SL +S I + + ++ L + L H ++ + I
Sbjct: 405 --MVVVN----KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-HRSIVDHYNIP- 456
Query: 1133 QKFEKGARS--RLSSYSLRPL---LWEAGSTVSNKVLECLVL--RFTKNKV----LTWE- 1180
+ F+ L Y + L + + L RF + K+ W
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 1181 -NFIMAMV------RLHLAHGHP------NDYL-FL-----TLFMFKKTDVDQIG 1216
I+ + + ++ P N L FL L K TD+ +I
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Score = 39.8 bits (92), Expect = 0.006
Identities = 105/672 (15%), Positives = 190/672 (28%), Gaps = 182/672 (27%)
Query: 416 MSFEDFAKHFTHLDLVHVGPDDWMAEPALQSKQPW-RAVLARRRWRTGYNAGGGPNFVET 474
M FE + + D++ V D ++ + Q +++L++ + + V
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS---KDAVSG 63
Query: 475 TSVNPQFHIQIPRSSNNKCHVVVSVTQYYETQVDEKQKRTLYAIGFAVYEISSSMTRLTP 534
T S + Q + +V + L + + + +T
Sbjct: 64 T----LRLFWTLLSKQE------EMVQKFVEEVLRINYKFLMS---PIKTEQRQPSMMTR 110
Query: 535 QFVAHTKPLDVTNHSVAREVVT-----------FFTLPPGDFIVVPQTNVPDCDGKFLLR 583
++ L N A+ V+ L P +++ V GK +
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI--DGVLGS-GKTWVA 167
Query: 584 IFTDEQRDFIVVPQTNVPDCDGKFLLRIFTDEQSNIW----EVNEDNMVFR---NISTEF 636
+ D + V K +IF W N V + +
Sbjct: 168 L--DVCLSYKVQC---------KMDFKIF-------WLNLKNCNSPETVLEMLQKLLYQI 209
Query: 637 LENTVVLPDGKSLVAKLLVKYPLEVDVSQFQKILRSHWKENT-VVLPDGKSLVAKLLVKY 695
N D S +K + ++ +++L+S EN +VL + V+
Sbjct: 210 DPNWTSRSDHSS-----NIKLRIHSIQAELRRLLKSKPYENCLLVLLN---------VQN 255
Query: 696 PLEVDVSQFQ-KIL---RSHWKEKLEGIKNNVLTVLIL---------PDGKSLVAKLL-V 741
+ KIL R K+ + + T + L + KSL+ K L
Sbjct: 256 AKAWNAFNLSCKILLTTRF--KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 742 KY---PLEVDHAYSVTGLARVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERD 798
+ P EV +T R + E +R+ A W W + D L+
Sbjct: 314 RPQDLPREV-----LTTNPRRLSIIAE----SIRDGLAT--WD-NW--KHVNCDKLTTII 359
Query: 799 KELLSIRVSNDGEFWMSFEDFA---KHFTHLDLVH----VQMTGWRSLRYNQ-----NNL 846
+ S+ V E+ F+ + H + W + + N L
Sbjct: 360 E--SSLNVLEPAEYRKMFDRLSVFPPS------AHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 847 GELSWLAEDGGPVTMLEAARISFYGCYENLTHGGSTTRALQDLTGGIVQS---------- 896
+ S + + T IS Y L AL IV
Sbjct: 412 HKYSLVEKQPKEST------ISIPSIYLELKVKLENEYALHRS---IVDHYNIPKTFDSD 462
Query: 897 -FALTNQDRYLTFQV---LNSAVPRSSLLISSIKLWKEILVDDR---------------- 936
D+Y + L + + L++ + +D R
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNI-----EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 937 ---LPTFQGRLVYLHSTNPTEFWAALLEKAYAKF-YGCYENLTHGGSTTRALQDLTGGIV 992
L T Q Y + L A F ENL T ++
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD---------LL 568
Query: 993 QSFALTNQDRYL 1004
+ AL +D +
Sbjct: 569 R-IALMAEDEAI 579
Score = 37.9 bits (87), Expect = 0.026
Identities = 93/620 (15%), Positives = 173/620 (27%), Gaps = 181/620 (29%)
Query: 87 RNKKAPVQSLVWM---RPHEMCQRPKFYSEDSLQGRFDFEAGRLGDAWFLAAISSLTLTP 143
++ + L W + EM Q+ + E+ L+ + + ++ I + P
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQK---FVEEVLRINYK---------FLMSPIKTEQRQP 105
Query: 144 --------KFLDRVIPPEQSFDPATNYCGLFRPKFYSE--DSLQ----GRFDFEAGRLGD 189
+ DR+ Q F + R + Y + +L + G LG
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYN----VSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 190 A-WFLAA--ISSLTLTPKFLDRVIPPEQSFDPATNYCGLFRFRFW-HFGEWKEILVDDRL 245
++A S + K ++ FW + + +
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKI--------------------FWLNLKNCNS---PETV 198
Query: 246 PTFQGRLVYLHSTNPTEFWAALLEKAYAKFYGCYE------NLTHGGSTTRALQDL---- 295
+L+Y N W + + + + L L L
Sbjct: 199 LEMLQKLLYQIDPN----WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 296 TGGIVQSFA------LTNQDRYLTFQVLNSAVPRSSLLISSIKLEKEQKRQLRLRNGLIT 349
+F LT + + +T + + SL S+ L ++ + L L L
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDC 313
Query: 350 QHAYSVTGLARVRGPLGETPLV------RLRNPWARGEWTGPWSERSWEWDGLSERDKEL 403
L R L P +R+ A W W + D L+ +
Sbjct: 314 ----RPQDLPRE--VLTTNPRRLSIIAESIRDGLAT--WD-NW--KHVNCDKLTTIIE-- 360
Query: 404 LSIRVSNDGEFWMSFEDFAKHFTHLDLVHVGPDDWMAEPALQSKQPWRAVLARRRWRTGY 463
S+ V E+ F+ + V P + P +L+ W
Sbjct: 361 SSLNVLEPAEYRKMFDRLS----------VFPPS--------AHIP-TILLS-LIW---- 396
Query: 464 NAGGGPNFVETTSVNPQFHIQIPRSSNNKCHVVVSVTQYYETQVDEKQK----RTLYAIG 519
+ V + H + S + S ++ K K L+
Sbjct: 397 ---FDVIKSDVMVVVNKLH----KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 520 FAVYEISSSM--TRLTP--------QFVA-HTKPLDVT-NHSVAREVVTFFTLPPGDFI- 566
Y I + L P + H K ++ ++ R V F F+
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV--FLDF---RFLE 504
Query: 567 --VVPQTNVPDCDGKFL-----LRIF---------TDEQR-----DFIVVPQTNV---PD 602
+ + + G L L+ + E+ DF+ + N+
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 603 CDGKFLLRI-FTDEQSNIWE 621
D LLRI E I+E
Sbjct: 565 TD---LLRIALMAEDEAIFE 581
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 1e-05
Identities = 122/771 (15%), Positives = 206/771 (26%), Gaps = 317/771 (41%)
Query: 30 MNGHATRPDDKQSTLS----RY-WTVERPRQTANYHAIKRACREKGILYEDPDFPPGPKL 84
M+ ++TRP TLS + V P TA++ + L E F
Sbjct: 1 MDAYSTRP----LTLSHGSLEHVLLV--P--TASFFIASQ-------LQE--QF------ 37
Query: 85 LFRNKKAPVQSLVWMRPHEMCQRPKFYSEDSLQGRFDFEAGRLGDAWFLAAISSLTLTPK 144
NK P + + + L G+F LG
Sbjct: 38 ---NKILPEPT------EGFAADDEPTTPAELVGKF------LG---------------- 66
Query: 145 FLDRVIPPEQ--SFDPATNYC-GLFRPKF-YSED------SLQGRFDFEAGRLGDAWFLA 194
++ ++ P + FD N C F + D L D + +
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE-LIKN 125
Query: 195 AISSLTLTPKFLDRVIPPEQS--FDPATNYCGLFRFRFWHFGEWKEILVDDRLPTFQGRL 252
I++ + + D+ S F G + FG QG
Sbjct: 126 YITARIMAKRPFDK---KSNSALFRAVGE--GNAQL-VAIFGG-------------QG-- 164
Query: 253 VYLHSTNPTEFWAALLEKAYAKFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQD--R 310
N +++ L + Y Y L L + + T D +
Sbjct: 165 ------NTDDYFEELRD-----LYQTYHVL------VGDLIKFSAETLSELIRTTLDAEK 207
Query: 311 YLT--FQVLN-----SAVPRSSLLIS---SIKLEKEQKRQLRLRNGLITQHA-YSVTGLA 359
T +L S P L+S S L G+ Q A Y VT A
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIPISCPL-----------IGV-IQLAHYVVT--A 253
Query: 360 RVRGPLGETPLVRLRNPWARGEWTGPWSERSWEWDGLSERDKELLS---IRVSNDGEFWM 416
++ LG TP GE G + + L++ I ++ W
Sbjct: 254 KL---LGFTP----------GELRSYLK-------GATGHSQGLVTAVAIAETDS---WE 290
Query: 417 SFEDFAKHFTHLDLVHVGPDDWMAEPALQSKQPWRAVLARRRWRTGYNAGGGPNFVETTS 476
SF + + L +G R
Sbjct: 291 SFFVSVRKAITV-LFFIG---------------VRC------------------------ 310
Query: 477 VNPQFHIQIPRSSNNKCHVVVSVTQYYETQVDEKQKRTLYAIGFAVYEISSSM---TRLT 533
+ P +S + S+ + + +E + S M + LT
Sbjct: 311 -----YEAYPNTS-----LPPSILEDSL-ENNEG--------------VPSPMLSISNLT 345
Query: 534 PQFVAHTKPLDVTNHSVAREVVTFFTLPPGDFIVVPQTNVPDCDGKFL-------LRIFT 586
+ V ++ TN LP G + + N + L
Sbjct: 346 QEQV--QDYVNKTNSH----------LPAGKQVEISLVNGAKN---LVVSGPPQSLYGLN 390
Query: 587 DEQRDFIVVP---QTNVPDCDGKFLLRIFTDEQSNIWEVNEDNMVFRNISTEFLENTVVL 643
R Q+ +P F++ + + F +++ F ++ +L
Sbjct: 391 LTLRKAKAPSGLDQSRIP----------FSERKLKF------SNRFLPVASPF--HSHLL 432
Query: 644 PDGKSLVAKLLVKYPLEVDVSQFQKILRSHWKENTVVLP-----DGK-------SLVAKL 691
L+ K LVK + + Q +P DG S+ ++
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQ-------------IPVYDTFDGSDLRVLSGSISERI 479
Query: 692 LVKYPLEVDVSQFQKILRS--HWKEKLEGIKNNVLTVLIL-PDGKSLVAKL 739
VD I+R W E + +L P G S + L
Sbjct: 480 -------VDC-----IIRLPVKW-ETT--TQFKATHILDFGPGGASGLGVL 515
Score = 40.8 bits (95), Expect = 0.003
Identities = 58/355 (16%), Positives = 121/355 (34%), Gaps = 89/355 (25%)
Query: 894 VQSFALTNQDRYLTFQVLNSAVPRSSLLISSIKLWKEILVDDRLPTFQGRLVYLHSTNPT 953
+ L++ L +L VP ++ + +L ++ F L PT
Sbjct: 6 TRPLTLSHGS--LEHVLL---VP-TASFFIASQLQEQ---------FNKIL-----PEPT 45
Query: 954 EFWAALLEKA-----YAKFYGCYENLTHGGSTTRALQDLTGGIVQSFALTNQDRYLTFQV 1008
E +AA E KF G +L + Q L + F ++ YL
Sbjct: 46 EGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNL-CLTEF----ENCYLEGND 100
Query: 1009 LNSAVPRSSLLISSIKLEKEQKRQLR-------LRNGLITQHAYS------VTGLARVRG 1055
+++ + LL + + K ++ + + + S G A++
Sbjct: 101 IHALA--AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 1056 PLG-----ETPLVRLRNPWARGEWTGPWSEFFLNFSAYLLE---KPSLDMCKSL-----I 1102
G + LR+ + + FSA L + +LD K I
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYH---VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 1103 M--LRDTNIS-GRLNLLDIPL---LMHMLQF--WRIAFQKFEKGARSRLSSYSLRPLLWE 1154
+ L + + + + LL IP+ L+ ++Q + + + + LR L +
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG------FTPGELRSYL-K 268
Query: 1155 AGSTVSNKVLECLVLRFTKNKVLTWENFIMAMVR-LHL-----AHGH---PNDYL 1200
+ S ++ + + T +WE+F +++ + + + + PN L
Sbjct: 269 GATGHSQGLVTAVAIAETD----SWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Score = 30.8 bits (69), Expect = 3.8
Identities = 48/297 (16%), Positives = 92/297 (30%), Gaps = 100/297 (33%)
Query: 684 GKSL-----VAKLLVKYPLEVDVSQFQKILRSHWKEKL-----EGIKNNVLTVLILPDGK 733
G L A+ + D +H+K+ + + NN + + I G+
Sbjct: 1632 GMDLYKTSKAAQDVWN---RAD---------NHFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 734 SLVAKLLVKYPLEVDHAYSVTGLARVRGPLGE----TPLVRLRNPWARG-----EWTGP- 783
++ Y + V G + E + R+ +G ++T P
Sbjct: 1680 KG-KRIRENY-SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE--KGLLSATQFTQPA 1735
Query: 784 ---WSE---RSWEWDGLSERDKEL--LSIRVSNDGEF--------WMSFEDFAKHFTHLD 827
+ + GL D S+ GE+ MS E +
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSL-----GEYAALASLADVMSIESLVE------ 1784
Query: 828 LVHVQMTGWRSLRYNQNNLGELSWLA----EDG-GPVTM--LEAARISFYGCYENLTHGG 880
+V R G +A E G M + R++ E L +
Sbjct: 1785 VVF--------YR------GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY-- 1828
Query: 881 STTRALQDLTGGIVQ--SFALTNQDRYLTFQVL----NSAVPRSSLLISSIKLWKEI 931
+ TG +V+ ++ + NQ Q + A+ + +++ IKL ++I
Sbjct: 1829 -VVERVGKRTGWLVEIVNYNVENQ------QYVAAGDLRALDTVTNVLNFIKL-QKI 1877
>1nln_A Adenain; thiol hydrolase, viral proteinase, peptide cofactor; 1.60A
{Human adenovirus 2} SCOP: d.3.1.7 PDB: 1avp_A
Length = 204
Score = 31.5 bits (71), Expect = 1.2
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 14/89 (15%)
Query: 155 SFDPATNYCGLFRPKFYSEDSLQGRFDFEAGRLGDAWFLAAISSLTLTPKFLDRVIPPEQ 214
+++P + C LF P +S+ L+ + FE L S++ +P DR I E+
Sbjct: 59 AWNPRSKTCYLFEPFGFSDQRLKQVYQFEYES------LLRRSAIASSP---DRCITLEK 109
Query: 215 SFD----PATNYCGLFRFRFWH-FGEWKE 238
S P + CGLF F H F W +
Sbjct: 110 STQSVQGPNSAACGLFCCMFLHAFANWPQ 138
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.427
Gapped
Lambda K H
0.267 0.0652 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 19,222,635
Number of extensions: 1189416
Number of successful extensions: 2800
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2716
Number of HSP's successfully gapped: 50
Length of query: 1218
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1114
Effective length of database: 3,798,009
Effective search space: 4230982026
Effective search space used: 4230982026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.2 bits)